Miyakogusa Predicted Gene

Lj4g3v0281060.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0281060.1 Non Chatacterized Hit- tr|I3SNB2|I3SNB2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.7,3.00004e-41,no description,NULL; snRNP Sm
proteins,Ribonucleoprotein LSM domain, eukaryotic/archaea-type;
LSM,Ri,CUFF.46786.1
         (267 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64426 homologue to UniRef100_A7NXU4 Cluster: Chromoso...   529   e-150

>gnl|LJGI|TC64426 homologue to UniRef100_A7NXU4 Cluster: Chromosome chr5 scaffold_2,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr5 scaffold_2, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (97%)
          Length = 715

 Score =  529 bits (267), Expect = e-150
 Identities = 267/267 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctagcaatccgtcacagcttctcccatcagagttgattgatagatgcattggttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atggctagcaatccgtcacagcttctcccatcagagttgattgatagatgcattggttca 244

                                                                       
Query: 61  aaaatatgggtgattatgaaaggtgataaggagcttgttggtactctcagaggctttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaaatatgggtgattatgaaaggtgataaggagcttgttggtactctcagaggctttgat 304

                                                                       
Query: 121 gtttatgttaacatggtccttgaagatgttactgaatatgaaataactgctgaagggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtttatgttaacatggtccttgaagatgttactgaatatgaaataactgctgaagggaga 364

                                                                       
Query: 181 cggataactaagcttgatcagattttactcaacggaaacaacattgctattttggtccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cggataactaagcttgatcagattttactcaacggaaacaacattgctattttggtccct 424

                                      
Query: 241 ggtggttcgcctgatccagaatgaata 267
           |||||||||||||||||||||||||||
Sbjct: 425 ggtggttcgcctgatccagaatgaata 451