Miyakogusa Predicted Gene

Lj4g3v0119590.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v0119590.1 tr|B9HA38|B9HA38_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_802442 PE=4
SV=1,31.16,1e-17,TPR-like,NULL; PPR,Pentatricopeptide repeat; no
description,Tetratricopeptide-like helical; PPR: pen,gene.g51549.t1.1
         (1365 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70473 weakly similar to UniRef100_A7PDK1 Cluster: Chr...   597   e-170

>gnl|LJGI|TC70473 weakly similar to UniRef100_A7PDK1 Cluster: Chromosome chr17
           scaffold_12, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr17 scaffold_12, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (29%)
          Length = 544

 Score =  597 bits (301), Expect = e-170
 Identities = 301/301 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaccacttgaaggagattcatgctcgtatataccagaccgggttccaccagaaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgaaccacttgaaggagattcatgctcgtatataccagaccgggttccaccagaaccac 242

                                                                       
Query: 61  ctcgtcgtcggaaagatcatcgtcttctgcgcagtatctgttccggcgggggacatgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctcgtcgtcggaaagatcatcgtcttctgcgcagtatctgttccggcgggggacatgaac 182

                                                                       
Query: 121 tacgcagtctctgtcttcgacagggttgataaaccagacgcatttctctggaacaccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacgcagtctctgtcttcgacagggttgataaaccagacgcatttctctggaacaccatg 122

                                                                       
Query: 181 atcaggggctttggtaacacgaatcaacctgaaaaggccgttttattctacaagagaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcaggggctttggtaacacgaatcaacctgaaaaggccgttttattctacaagagaatg 62

                                                                       
Query: 241 cagcagggtgaacctcatgtggttccagacaccttcactttctcattcttgctcaaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cagcagggtgaacctcatgtggttccagacaccttcactttctcattcttgctcaaaatt 2

            
Query: 301 g 301
           |
Sbjct: 1   g 1