Miyakogusa Predicted Gene
- Lj3g3v3639920.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v3639920.1 Non Chatacterized Hit- tr|I1LP26|I1LP26_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46889
PE,80.79,0,Eukaryotic DNA topoisomerase I, N-terminal DNA-binding
fragment,DNA topoisomerase I, DNA binding, eu,CUFF.46130.1
(2697 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80969 homologue to UniRef100_O24307 Cluster: Topoisom... 1275 0.0
gnl|LJGI|TC66323 similar to UniRef100_A7PX10 Cluster: Chromosome... 1172 0.0
gnl|LJGI|TC62762 similar to UniRef100_Q9ZSC8 Cluster: Topoisomer... 1080 0.0
gnl|LJGI|TC63638 similar to UniRef100_A5AZF5 Cluster: 60S riboso... 62 2e-08
>gnl|LJGI|TC80969 homologue to UniRef100_O24307 Cluster: Topoisomerase I; n=1; Pisum
sativum|Rep: Topoisomerase I - Pisum sativum (Garden
pea), partial (27%)
Length = 739
Score = 1275 bits (643), Expect = 0.0
Identities = 686/694 (98%), Gaps = 6/694 (0%)
Strand = Plus / Plus
Query: 1410 ggagaaatacacgtgggctattgtggatggtgttaaagagaaggttggaaattttagagt 1469
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 52 ggagaaatacacgtgggccattgtggatggtgttaaagagagggttggaaattttagagt 111
Query: 1470 tgaaccaccaggattgttccgaggccgtggagagcatcccaagatgggaaaattgaaaag 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tgaaccaccaggattgttccgaggccgtggagagcatcccaagatgggaaaattgaaaag 171
Query: 1530 acgcattcgtcctagtgatatcgtaattaatattggaaaggatgcaccaattcctgaatg 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 acgcattcgtcctagtgatatcgtaattaatattggaaaggatgcaccaattcctgaatg 231
Query: 1590 tcctattcctggtgaaaggtggaaggagataagacatgacaatacagttacatggttagc 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tcctattcctggtgaaaggtggaaggagataagacatgacaatacagttacatggttagc 291
Query: 1650 cttctggaatgatccgatcaatccaaagttgttcaagtatgtgtttctggcagctagtag 1709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cttctggaatgatccgatcaatccaaagttgttcaagtatgtgtttctggcagctagtag 351
Query: 1710 ttccttgaagggccaaagtgacaaggaaaagtatgagaaagctaggatgttgaaggatta 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttccttgaagggccaaagtgacaaggaaaagtatgagaaagctaggatgttgaaggatta 411
Query: 1770 tatagggaacattagagcggcatacacgaaagattttacaagtaaagatattacgaagca 1829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tatagggaacattagagcggcatacacgaaagattttacaagtaaagatattacgaagca 471
Query: 1830 gcaaatagctgttgctacttatcttattgataaactagctctgagggctggcaatgagaa 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gcaaatagctgttgctacttatcttattgataaactagctctgagggctggcaatgagaa 531
Query: 1890 ggatgatgatgaagctgatactgttggttgctgcacattaaaagtggagaatgtgacaag 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ggatgatgatgaagctgatactgttggttgctgcacattaaaagtggagaatgtgacaag 591
Query: 1950 agaagcccccaacaagttgaagtttaacttccttggtaaagattcaatcaagtatgaaaa 2009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agaagcccccaacaagttgaagtttaacttccttggtaaagattcaatcaagtatgaaaa 651
Query: 2010 tacagttgaggtcgagcttcctgtttacaatgcaatattgaagttccaaaaagataaaaa 2069
||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 652 tacagttga-gtcgagcttcctg-ttacaatgcaatattgaagttcc-aaaagataaaa- 707
Query: 2070 gggtggtgatgatctttttgacatgttggataca 2103
||||||||||||| |||||||||||||||||||
Sbjct: 708 -ggtggtgatgatc-ttttgacatgttggataca 739
>gnl|LJGI|TC66323 similar to UniRef100_A7PX10 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 841
Score = 1172 bits (591), Expect = 0.0
Identities = 591/591 (100%)
Strand = Plus / Plus
Query: 2107 aaattaaatgcacatctgaaggaactcatgcctggtctaacagcaaaagtcttccgtaca 2166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattaaatgcacatctgaaggaactcatgcctggtctaacagcaaaagtcttccgtaca 60
Query: 2167 ttcaatgcatctatcacattggatgatatgttgaataaggacactaaagatggagatgtt 2226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcaatgcatctatcacattggatgatatgttgaataaggacactaaagatggagatgtt 120
Query: 2227 ggggaaaagattgttgtttatcagcatgcaaataaacaggttgcaatcatttgtaatcat 2286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggggaaaagattgttgtttatcagcatgcaaataaacaggttgcaatcatttgtaatcat 180
Query: 2287 caacgtagcgtttcaaaatctcacgatacacaaatgacaaggttaaatgaaaagcttgat 2346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caacgtagcgtttcaaaatctcacgatacacaaatgacaaggttaaatgaaaagcttgat 240
Query: 2347 gaacttcaggctgttctgaaggagctaagaacggatttggacagggctaggaaaggaaag 2406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaacttcaggctgttctgaaggagctaagaacggatttggacagggctaggaaaggaaag 300
Query: 2407 cccccttcaaagagtccagatggaaagaagaagaagaacttgtcttccgaagcgctagag 2466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cccccttcaaagagtccagatggaaagaagaagaagaacttgtcttccgaagcgctagag 360
Query: 2467 aaaaagatatctcaaaccaatgcaaagattgagaaaatgcagcgtgatatgaagacaaaa 2526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaaagatatctcaaaccaatgcaaagattgagaaaatgcagcgtgatatgaagacaaaa 420
Query: 2527 gaagatctcaaaactgtggcattaggcacatccaagataaactaccttgatcccaggatt 2586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaagatctcaaaactgtggcattaggcacatccaagataaactaccttgatcccaggatt 480
Query: 2587 acagtcgcctggtgcaagagacacgaggttcctattgaaaagattttcaacaagtctctg 2646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acagtcgcctggtgcaagagacacgaggttcctattgaaaagattttcaacaagtctctg 540
Query: 2647 ctggcaaagttcacttgggctatggatgtggaccctgacttcagattctga 2697
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctggcaaagttcacttgggctatggatgtggaccctgacttcagattctga 591
>gnl|LJGI|TC62762 similar to UniRef100_Q9ZSC8 Cluster: Topoisomerase I; n=1;
Nicotiana tabacum|Rep: Topoisomerase I - Nicotiana
tabacum (Common tobacco), partial (3%)
Length = 726
Score = 1080 bits (545), Expect = 0.0
Identities = 562/570 (98%)
Strand = Plus / Plus
Query: 1 atggctgtggaggcttctgacaaaccaaatctgccagataattttgacgatgaaccatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atggctgtggaggcttctgacaaaccaaatctgccagataattttgacgatgaaccatta 216
Query: 61 gttttcaaaaggtatacgagcaagaaaagtcaattgaattcagaagtaaggaagtcaact 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gttttcaaaaggtataagagcaagaaaagtcaattgaattcagaagtaaggaagtcaact 276
Query: 121 tctcaaagccatgatggaccgtcatatagacagaattctgatgggccttcttcaaatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tctcaaagccatgatggaccgtcatatagacagaattctgatgggccttcttcaaatgga 336
Query: 181 aaaacttctagcatgcagaaaggtaatattgtcccgtctgctaaggtaacaccacccgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaaacttctagcatgcagaaaggtaatattgtcccgtctgctaaggtaacaccacccgtg 396
Query: 241 aaggcttctgtaggtatctcaaaagcatctaattcacttggcaacgcctcatctgctaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaggcttctgtaggtatctcaaaagcatctaattcacttggcaacgcctcatctgctaag 456
Query: 301 ttgcctctggcaaattcaaagttagtttcatcgagggataaacctaagactctttcagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttgcctctggcaaattcaaagttagtttcatcgagggataaacctaagactctttcagaa 516
Query: 361 cagaaaatgtccattaatgttaaggaggnnnnnnntatcaaaaattgttctaaagatgaa 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 517 cagaaaatgtccattaatgttaaggaggaaaaaaatatcaaaaattgttctaaagatgaa 576
Query: 421 gattcagaggacgatgatgatcataaaccattgagtgctaggttgaaggtgaactctcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gattcagaggacgatgatgatcataaaccattgagtgctaggttgaaggtgaactctcac 636
Query: 481 cacgacaacaaaacgtcccctgttgttgtcaagaagtcttctgaagactctgaagatgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cacgacaacaaaacgtcccctgttgttgtcaagaagtcttctgaagactctgaagatgat 696
Query: 541 gatgatgatatccctttgtcagtaaagata 570
||||||||||||||||||||||||||||||
Sbjct: 697 gatgatgatatccctttgtcagtaaagata 726
>gnl|LJGI|TC63638 similar to UniRef100_A5AZF5 Cluster: 60S ribosomal protein L13; n=1;
Vitis vinifera|Rep: 60S ribosomal protein L13 - Vitis
vinifera (Grape), partial (78%)
Length = 695
Score = 61.9 bits (31), Expect = 2e-08
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2573 ttgatcccaggattacagtcgcctggtgcaa 2603
|||||||||||||||||||||||||||||||
Sbjct: 357 ttgatcccaggattacagtcgcctggtgcaa 387