Miyakogusa Predicted Gene
- Lj3g3v2810110.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v2810110.1 Non Chatacterized Hit- tr|C5WV81|C5WV81_SORBI
Putative uncharacterized protein Sb01g016560
OS=Sorghu,28.2,2e-18,TPR-like,NULL; PPR_2,Pentatricopeptide repeat;
PPR_1,Pentatricopeptide repeat; PPR,Pentatricopeptide,CUFF.44717.1
(1444 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS334482 weakly similar to UniRef100_Q9LVS3 Cluster: Si... 1088 0.0
gnl|LJGI|FS361047 weakly similar to UniRef100_Q9LVS3 Cluster: Si... 737 0.0
>gnl|LJGI|FS334482 weakly similar to UniRef100_Q9LVS3 Cluster: Similarity to
salt-inducible protein; n=1; Arabidopsis thaliana|Rep:
Similarity to salt-inducible protein - Arabidopsis
thaliana (Mouse-ear cress), partial (22%)
Length = 706
Score = 1088 bits (549), Expect = 0.0
Identities = 549/549 (100%)
Strand = Plus / Plus
Query: 1 atgctccattttctaaattttcggttttcaccatgcttacacaaactcaaaacccttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 atgctccattttctaaattttcggttttcaccatgcttacacaaactcaaaacccttccc 217
Query: 61 ttttcctcccagaaaatgggtatggcttctcttgctgataccctttacagccatttgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ttttcctcccagaaaatgggtatggcttctcttgctgataccctttacagccatttgcat 277
Query: 121 caatgcaatggcagtgttgagaattcattgtcaaagattaagcccaaactggattctcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caatgcaatggcagtgttgagaattcattgtcaaagattaagcccaaactggattctcaa 337
Query: 181 tgtgttattcaagttgtgagtaggtgctgtcccaagcaatgtcaattgggtgttaggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgtgttattcaagttgtgagtaggtgctgtcccaagcaatgtcaattgggtgttaggttt 397
Query: 241 ttcatttgggctggatttcaatctgggtataggcatagtgcttatatgtataggaaagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttcatttgggctggatttcaatctgggtataggcatagtgcttatatgtataggaaagca 457
Query: 301 agcagcttgcttgggattgataggaatcctcagatgatttgtgatttgattgagtcttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agcagcttgcttgggattgataggaatcctcagatgatttgtgatttgattgagtcttat 517
Query: 361 gaggctgaagggtgtgtagtcactgttaacatgtttagggaggttctgaagctttgtaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaggctgaagggtgtgtagtcactgttaacatgtttagggaggttctgaagctttgtaaa 577
Query: 421 gaggctcagcttgctgatgtggctttgtgggtgttgaggaagatggaggattttggctcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaggctcagcttgctgatgtggctttgtgggtgttgaggaagatggaggattttggctcg 637
Query: 481 cgcccggacacggtgatgtataatgtggttatcaggttgtgttgcaagaagggtgatgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cgcccggacacggtgatgtataatgtggttatcaggttgtgttgcaagaagggtgatgtt 697
Query: 541 gaaatgggt 549
|||||||||
Sbjct: 698 gaaatgggt 706
>gnl|LJGI|FS361047 weakly similar to UniRef100_Q9LVS3 Cluster: Similarity to
salt-inducible protein; n=1; Arabidopsis thaliana|Rep:
Similarity to salt-inducible protein - Arabidopsis
thaliana (Mouse-ear cress), partial (7%)
Length = 645
Score = 737 bits (372), Expect = 0.0
Identities = 393/401 (98%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 1045 ttgataaggataaaaa-gacttgaggaagcagagaagctcttccgggaattgcttgctgg 1103
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttgataaggataaaaaagacttgaggaagcagagaagctcttccgggaattgcttgctgg 586
Query: 1104 tgagttgaaacctgacactttggcatctagccttttgcttaaggagctttgtatgaagga 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgagttgaaacctgacactttggcatctagccttttgcttaaggagctttgtatgaagga 526
Query: 1164 tcgggtattggacggattctacttgcttgatgcaatggagaatatgggatgcttgtcttc 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcgggtattggacggattctacttgcttgatgcaatggagaatatgggatgcttgtcttc 466
Query: 1224 cattgactctgatatttattctattattttgattggactttgtcnnnnnnnccacttggc 1283
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 465 cattgactctgatatttattctattattttgattggactttgtcaaaaaaaccacttggc 406
Query: 1284 agaggccacaaagcttgccaagataatgcttaagaaatcagttctactaagacctccata 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agaggccacaaagcttgccaagataatgcttaagaaatcagttctactaagacctccata 346
Query: 1344 ccaagatagtgcaattgatatcctgagaaaatctgaagaaaaagatcttgtagatcttgt 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccaagatagtgcaattgatatcctgagaaaatctgaagaaaaagatcttgtagatcttgt 286
Query: 1404 gaaccagctgactggtatacgtaagggacttggacagtaaa 1444
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaaccagctgactggtatacgtaagggacttggacagtaaa 245