Miyakogusa Predicted Gene
- Lj3g3v1663540.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1663540.1 Non Chatacterized Hit- tr|I1NLB1|I1NLB1_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,38.07,5e-19,HLH,Helix-loop-helix domain; no
description,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-bindi,CUFF.43072.1
(771 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58588 similar to UniRef100_A7PJF8 Cluster: Chromosome... 517 e-146
gnl|LJGI|TC78387 weakly similar to UniRef100_A7PJF8 Cluster: Chr... 490 e-138
gnl|LJGI|BG662473 202 2e-51
>gnl|LJGI|TC58588 similar to UniRef100_A7PJF8 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (70%)
Length = 1300
Score = 517 bits (261), Expect = e-146
Identities = 578/686 (84%)
Strand = Plus / Plus
Query: 82 gtaaatggaagtgggtatggttcacctctctctctggttttggatagagagagaggggag 141
|||| |||||||||||||| |||| || ||||||||||||||||| || | || |||
Sbjct: 346 gtaattggaagtgggtatgcttcatcttcgtctctggttttggatagggacaagggagag 405
Query: 142 cttgtggaggcccctgccaaattggaacggaagggtgtgtccaatgagagaagcattgat 201
|| || ||||||||| |||||||||| |||||||||||| ||||||||| |||||
Sbjct: 406 ctcgttgaggcccctatgcaattggaacgaaagggtgtgtcccctgagagaagtattgaa 465
Query: 202 gctttgaagaaccatagcgaggcagagagaaggaggagagcgaggatcaatgcacatctt 261
||||||| ||||||||| || |||||| ||||||||||||| || || ||||||||||||
Sbjct: 466 gctttgaggaaccatagtgaagcagagcgaaggaggagagcaagaattaatgcacatctt 525
Query: 262 gatactcttcgcaatgtgatcccaggtgctatgaagatggacaaagcatcattacttggt 321
||||| ||||||| |||||| |||||||||| ||||||||||| || || || || | |
Sbjct: 526 gatacccttcgcactgtgattccaggtgctaacaagatggacaaggcctccttgctggct 585
Query: 322 gaggttcttagacatttgaaagatctgaaaaggaatgcagcacaagattgtgaaggttta 381
||||| ||| |||||||||||| ||||||| ||||||||||||| | ||||||| |||
Sbjct: 586 gaggtaattacacatttgaaagagctgaaaacaaatgcagcacaagctagtgaaggctta 645
Query: 382 atgataccgaaggacaatgatgaaatcaatgttgaagaacaggagggtgggttgaatggt 441
|||||||||||||||||||||||||| | ||||||||||| || ||||| |||||||||
Sbjct: 646 atgataccgaaggacaatgatgaaataagagttgaagaacaagaaggtggattgaatggt 705
Query: 442 tttccttattcaattagagcatcactatgttgtgaatataaaccagggttattgtctaat 501
|| |||||||||||| | ||||| |||||||| |||||||| || |||||||||||| ||
Sbjct: 706 ttcccttattcaattcgggcatcgctatgttgcgaatataagcctgggttattgtctgat 765
Query: 502 ataagacaagaactagattctcttcatcttatgataatcaaggcagatattgcaactctg 561
|||||||||| ||| ||| | ||||||||||||||||| | |||||| |||||||| ||
Sbjct: 766 ataagacaagcacttgatgcacttcatcttatgataatgagggcagagattgcaaccttg 825
Query: 562 ggaagcaggatgaagaatgtgcttgtgattattagctgcgaagaacggaactttgaagat 621
||| |||||||||||||||| ||||||| ||||||||| |||||| |||||| ||||||
Sbjct: 826 ggaggcaggatgaagaatgtctttgtgataattagctgcaaagaacagaacttcgaagat 885
Query: 622 gctgagtaccgtcagtttctcgcgggctctgttcaccaagctctgaggtctgtactcaat 681
|| |||||||| |||||||| || |||||||| || |||||||| || ||||| || ||
Sbjct: 886 gccgagtaccggcagtttctagctggctctgtacatcaagctcttagatctgtgcttgat 945
Query: 682 agattttgtgtttcacaggaggtcataggaaccnnnnnnngaaggagaatttctatattc 741
||||||| ||||||||| || | ||| || | ||||||| ||||||||||||
Sbjct: 946 agattttctgtttcacaagatattttagaaagcagaaagagaaggaggatttctatattc 1005
Query: 742 agttcatcatctttagaagatttctt 767
||||| |||||||||||||||||||
Sbjct: 1006 agttctacatctttagaagatttctt 1031
>gnl|LJGI|TC78387 weakly similar to UniRef100_A7PJF8 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (24%)
Length = 455
Score = 490 bits (247), Expect = e-138
Identities = 267/276 (96%)
Strand = Plus / Plus
Query: 496 tctaatataagacaagaactagattctcttcatcttatgataatcaaggcagatattgca 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctaatataagacaagaactagattctcttcatcttatgataatcaaggcagatattgca 60
Query: 556 actctgggaagcaggatgaagaatgtgcttgtgattattagctgcgaagaacggaacttt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actctgggaagcaggatgaagaatgtgcttgtgattattagctgcgaagaacggaacttt 120
Query: 616 gaagatgctgagtaccgtcagtttctcgcgggctctgttcaccaagctctgaggtctgta 675
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 gaagatgctgagtaccgtcagtttctcgcgggctctgttcacccagctctgaggtctgta 180
Query: 676 ctcaatagattttgtgtttcacaggaggtcataggaaccnnnnnnngaaggagaatttct 735
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 181 ctccatagattttgtgtttcacaggaggtcataggaacccaaaaaagaaggagaatttct 240
Query: 736 atattcagttcatcatctttagaagatttcttataa 771
||||||||||||||||||||||||||||||||||||
Sbjct: 241 atattcagttcatcatctttagaagatttcttataa 276
>gnl|LJGI|BG662473
Length = 420
Score = 202 bits (102), Expect = 2e-51
Identities = 105/106 (99%)
Strand = Plus / Plus
Query: 1 atggaagcttttgattgggactgtggcatccttggagatgctcctaagagaatcagtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atggaagcttttgattgggactgtggcatccttggagatgctcctaagagaatcagtgat 374
Query: 61 ggttttgaagtaaacaatggtgtaaatggaagtgggtatggttcac 106
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 375 ggttttgaagtatacaatggtgtaaatggaagtgggtatggttcac 420