Miyakogusa Predicted Gene

Lj3g3v1541420.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v1541420.1 Non Chatacterized Hit- tr|Q8S9G5|Q8S9G5_BRANA
Putative PCF11 protein OS=Brassica napus GN=pcf11
PE=2,41.73,2e-19,PRE-MRNA CLEAVAGE COMPLEX
II,NULL,NODE_51176_length_374_cov_76.981285.path2.1
         (381 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70581 similar to UniRef100_A7QUM0 Cluster: Chromosome...   579   e-165
gnl|LJGI|AV769223 similar to UniRef100_A7QUM0 Cluster: Chromosom...   145   2e-34

>gnl|LJGI|TC70581 similar to UniRef100_A7QUM0 Cluster: Chromosome chr10 scaffold_179,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr10 scaffold_179, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (14%)
          Length = 596

 Score =  579 bits (292), Expect = e-165
 Identities = 295/296 (99%)
 Strand = Plus / Plus

                                                                       
Query: 86  ggcttagtggtgcagaggcattaggaacagaatcagctccaggttttttgccaaatgata 145
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 48  ggcttagtggtgcagaggcattaggaacagaatcagctccagtttttttgccaaatgata 107

                                                                       
Query: 146 cggttgaggaaaagaaagatgatgaagagttggctgttcctgctgatgaggaccagaata 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cggttgaggaaaagaaagatgatgaagagttggctgttcctgctgatgaggaccagaata 167

                                                                       
Query: 206 catgtgcattatgtggagaaccttttgatgagttttacagtgatgaaacggaggagtgga 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 catgtgcattatgtggagaaccttttgatgagttttacagtgatgaaacggaggagtgga 227

                                                                       
Query: 266 tgtatagaggagctgtgtatcttaatgcacccaacggaacaacagcaggtttggacaggt 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgtatagaggagctgtgtatcttaatgcacccaacggaacaacagcaggtttggacaggt 287

                                                                   
Query: 326 cacaattaggccccatcattcatgctaagtgcagatctgaatctagtgtggctcca 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cacaattaggccccatcattcatgctaagtgcagatctgaatctagtgtggctcca 343



 Score =  101 bits (51), Expect = 3e-21
 Identities = 51/51 (100%)
 Strand = Plus / Minus

                                                             
Query: 49 aagccttctcgtaagtggtttgtgagtgagaggatgtggcttagtggtgca 99
          |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 aagccttctcgtaagtggtttgtgagtgagaggatgtggcttagtggtgca 2


>gnl|LJGI|AV769223 similar to UniRef100_A7QUM0 Cluster: Chromosome chr10 scaffold_179,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr10 scaffold_179, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (5%)
          Length = 375

 Score =  145 bits (73), Expect = 2e-34
 Identities = 79/81 (97%)
 Strand = Plus / Minus

                                                                       
Query: 301 ggaacaacagcaggtttggacaggtcacaattaggccccatcattcatgctaagtgcaga 360
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggaacaacagcaggcttgaacaggtcacaattaggccccatcattcatgctaagtgcaga 316

                                
Query: 361 tctgaatctagtgtggctcca 381
           |||||||||||||||||||||
Sbjct: 315 tctgaatctagtgtggctcca 295