Miyakogusa Predicted Gene
- Lj3g3v1507280.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1507280.1 tr|B6TB66|B6TB66_MAIZE 50S ribosomal protein L1
OS=Zea mays PE=2 SV=1,41.1,2e-18,no description,Ribosomal protein L1,
2-layer alpha/beta-sandwich; seg,NULL; Ribosomal protein
L1,Rib,CUFF.42713.1
(708 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76839 similar to UniRef100_A7PJI6 Cluster: Chromosome... 464 e-130
>gnl|LJGI|TC76839 similar to UniRef100_A7PJI6 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (52%)
Length = 1487
Score = 464 bits (234), Expect = e-130
Identities = 237/238 (99%)
Strand = Plus / Plus
Query: 457 atggtcagagctgtggaagatgaaaagatgaaggttccttttccgttgttgattaggcct 516
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 482 atggtcagagctgtggaagatgaaaagatgaaggttccttttccgttattgattaggcct 541
Query: 517 aagcagaaggagaagccccctgttcttgatttgatggaggccattcgccaagttaaggcc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aagcagaaggagaagccccctgttcttgatttgatggaggccattcgccaagttaaggcc 601
Query: 577 aatgccaaggcgaagtttgatgaaactattgaagcacatataagattgggtattgagtca 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aatgccaaggcgaagtttgatgaaactattgaagcacatataagattgggtattgagtca 661
Query: 637 aagcgaaccgaactggcagttcgtggtactgtgattctgcctcatggtgctcctaagg 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aagcgaaccgaactggcagttcgtggtactgtgattctgcctcatggtgctcctaagg 719
Score = 394 bits (199), Expect = e-109
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 1 atggcggcactgaagcttctcctctctcaagctcgccgccactacctcaccaaacacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 atggcggcactgaagcttctcctctctcaagctcgccgccactacctcaccaaacacact 85
Query: 61 acttcacatttccactctcccatttccctcacctctcacagatccctttcttcctcctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 acttcacatttccactctcccatttccctcacctctcacagatccctttcttcctcctcc 145
Query: 121 gaatctgaccctcctccaccccgacccttcgaacccatcccaatccaacccgtttcatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gaatctgaccctcctccaccccgacccttcgaacccatcccaatccaacccgtttcatac 205
Query: 181 cccgtcaaacccaaagaca 199
|||||||||||||||||||
Sbjct: 206 cccgtcaaacccaaagaca 224
Score = 333 bits (168), Expect = 9e-91
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 230 gccagcctccgccgccgacacagctttccggggaggccccggagccgcagcagcgggcat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gccagcctccgccgccgacacagctttccggggaggccccggagccgcagcagcgggcat 314
Query: 290 tgacgcgcgaggatattcgctacgtgaaggatgggccgtcgataacgccggtgtcgtacc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgacgcgcgaggatattcgctacgtgaaggatgggccgtcgataacgccggtgtcgtacc 374
Query: 350 caatgcgggtggcgccgctccccgaggatatggtcccggggcagaaga 397
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 caatgcgggtggcgccgctccccgaggatatggtcccggggcagaaga 422