Miyakogusa Predicted Gene

Lj3g3v1011000.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v1011000.1 tr|D7KQ32|D7KQ32_ARALL F-box family protein
(Fragment) OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYD,29.47,1e-18,LRR_2,Leucine-rich repeat 2; F-box,F-box domain,
cyclin-like; FAMILY NOT NAMED,NULL; no description,,CUFF.41989.1
         (964 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57924 similar to UniRef100_A7QK60 Cluster: Chromosome...   597   e-170
gnl|LJGI|BW599237                                                     123   2e-27

>gnl|LJGI|TC57924 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_111, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (14%)
          Length = 811

 Score =  597 bits (301), Expect = e-170
 Identities = 589/685 (85%)
 Strand = Plus / Plus

                                                                       
Query: 16  tcatcacctgattcacataagctccaaagacataatgtgggtgacatgaaagatatgatc 75
           |||||||||||| |||||||||||||||||  |||||||||||| ||||| |||||||||
Sbjct: 66  tcatcacctgatacacataagctccaaagaagtaatgtgggtgaaatgaaggatatgatc 125

                                                                       
Query: 76  agcaacttacctgatggtattcttcattacattctttctttactccctaccaaagaggct 135
           ||||||||||||||| |  ||||||||||||||||||||||  ||||||||||||| |||
Sbjct: 126 agcaacttacctgatagccttcttcattacattctttctttggtccctaccaaagatgct 185

                                                                       
Query: 136 atacgaacttccattttagcgaaaaggtggaagtacttgtggactgacttatctatcttt 195
           ||||||||||||||||| || |||||||||||||||||||||||   ||||||| |||||
Sbjct: 186 atacgaacttccattttggctaaaaggtggaagtacttgtggacctgcttatctgtcttt 245

                                                                       
Query: 196 gattttgaaaatgatataccaatggccagcatgaaagaagaccaaaaacagaaatctata 255
           ||||||||||| |||    || |   | |||||||||||||||||| |||||||||| ||
Sbjct: 246 gattttgaaaaggatcggtcatttatctgcatgaaagaagaccaaagacagaaatctcta 305

                                                                       
Query: 256 cattgccttttggatcaagtgcatggactactttgtcattctaattgtgttaaaaggctc 315
            ||||||| || |||||||||||  ||||||||| ||||||||||||||| |||| ||||
Sbjct: 306 tattgcctcttagatcaagtgcacagactactttatcattctaattgtgtgaaaaagctc 365

                                                                       
Query: 316 agtgtcatgttttttggggttgccgttgatgcagatagagttaattctattatatatggt 375
            ||||||  |  ||||| |||||| ||||||||||| ||||||||||| |||| | || |
Sbjct: 366 cgtgtcaattactttggagttgccattgatgcagatcgagttaattctcttatttctgct 425

                                                                       
Query: 376 gtagcgaagcataaaatcgaaaagcttaagctttctgtacttgtaaagcctccatttgtt 435
           | || |||||| ||||||||| ||||||||||||   ||||| ||||| |||  ||||| 
Sbjct: 426 gcagtgaagcacaaaatcgaagagcttaagctttacatacttctaaaggctcagtttgtg 485

                                                                       
Query: 436 ttacctaattgtttctcagcttctaaatcattgaataagctgcatttagatctgggatgt 495
           |||||| ||||| ||||||||| | |||||||||||||||||  |||||| ||||| |||
Sbjct: 486 ttacctcattgtctctcagcttttgaatcattgaataagctggttttagaactgggttgt 545

                                                                       
Query: 496 gttgtagatttccctagtggcattcatttccctagcctgaagacattaaagctttcgcgt 555
           | | || || | |||||||||||||| |||||| ||||||||| ||||||||||||| ||
Sbjct: 546 gctctaaatgttcctagtggcattcacttccctggcctgaagagattaaagctttcgtgt 605

                                                                       
Query: 556 gttacctttgcaaatgagaagtcagttgaacaacttttctctgggtgccctgtcctggaa 615
           |||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||  | 
Sbjct: 606 gttaactttgcaaatgagaagtcagttcaacatcttttctctggctgccctgtcctacag 665

                                                                       
Query: 616 aagttaaccttgtttatttgtaattggtctaacatcaagcagatcagcataacaactcca 675
           |||||||||||||| | |||||||||||  |||||||||||| || |||| |||| ||| 
Sbjct: 666 aagttaaccttgttcaattgtaattggtggaacatcaagcaggtcggcattacaattccc 725

                                    
Query: 676 acattaaagatattatccatctttt 700
           |||||||||| |||| |||||||||
Sbjct: 726 acattaaagacattaaccatctttt 750


>gnl|LJGI|BW599237 
          Length = 471

 Score =  123 bits (62), Expect = 2e-27
 Identities = 155/186 (83%)
 Strand = Plus / Plus

                                                                       
Query: 224 gcatgaaagaagaccaaaaacagaaatctatacattgccttttggatcaagtgcatggac 283
           |||||||||||||||||| |||||| ||     ||||||| ||  ||||||||||  |||
Sbjct: 253 gcatgaaagaagaccaaagacagaagtcgggggattgcctcttatatcaagtgcacagac 312

                                                                       
Query: 284 tactttgtcattctaattgtgttaaaaggctcagtgtcatgttttttggggttgccgttg 343
           |||||| ||||||||||||||| |||| |||| ||||||  |  ||||| |||||| |||
Sbjct: 313 tactttatcattctaattgtgtgaaaaagctccgtgtcaattactttggagttgccattg 372

                                                                       
Query: 344 atgcagatagagttaattctattatatatggtgtagcgaagcataaaatcgaaaagctta 403
           |||||||| ||||||||||| |||| | || || || |||||| ||||||||| ||||||
Sbjct: 373 atgcagatcgagttaattctcttatttctgctgcagtgaagcacaaaatcgaagagctta 432

                 
Query: 404 agcttt 409
           ||||||
Sbjct: 433 agcttt 438