Miyakogusa Predicted Gene

Lj3g3v0685960.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v0685960.1 tr|B9I028|B9I028_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1094414 PE=4
SV=1,56.52,2e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.41143.1
         (272 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC78447 weakly similar to UniRef100_A7P144 Cluster: Chr...    82   2e-15
gnl|LJGI|TC65334 similar to UniRef100_A7P186 Cluster: Chromosome...    68   3e-11
gnl|LJGI|TC62923 weakly similar to UniRef100_Q70I29 Cluster: S-r...    56   1e-07

>gnl|LJGI|TC78447 weakly similar to UniRef100_A7P144 Cluster: Chromosome chr19
           scaffold_4, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (12%)
          Length = 572

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 80/92 (86%), Gaps = 2/92 (2%)
 Strand = Plus / Plus

                                                                       
Query: 89  tatgtgtgcaagacagaccagaggataggccagacatgtca--gctgtagttcttatgct 146
           ||||||| ||||| ||||||||||| |||||||||||||||  |  |||||| | |||||
Sbjct: 212 tatgtgtacaagagagaccagaggacaggccagacatgtcagggtggtagttttaatgct 271

                                           
Query: 147 gaatggtgagaaaccattgccaagaccaaagg 178
           ||||||||||||| ||||||| | ||||||||
Sbjct: 272 gaatggtgagaaatcattgcccataccaaagg 303


>gnl|LJGI|TC65334 similar to UniRef100_A7P186 Cluster: Chromosome chr19 scaffold_4,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_4, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (34%)
          Length = 1193

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                       
Query: 89  tatgtgtgcaagacagaccagaggataggccagacatgtcagctgtagttcttatgctga 148
           ||||||||||| | || || || ||||| |||||||||||| | || ||||| ||||| |
Sbjct: 739 tatgtgtgcaacaaaggcctgaagatagaccagacatgtcatccgtggttctaatgctaa 798

                                         
Query: 149 atggtgagaaaccattgccaagaccaaagg 178
           |||||||||||| ||||||||  |||||||
Sbjct: 799 atggtgagaaactattgccaaagccaaagg 828


>gnl|LJGI|TC62923 weakly similar to UniRef100_Q70I29 Cluster: S-receptor kinase-like
           protein 2; n=1; Lotus japonicus|Rep: S-receptor
           kinase-like protein 2 - Lotus japonicus, partial (16%)
          Length = 766

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                       
Query: 91  tgtgtgcaagacagaccagaggataggccagacatgtcagctgtagttcttatgctgaat 150
           ||||||||| | || || || ||||| ||||||||||||  ||| ||||| ||||| |||
Sbjct: 311 tgtgtgcaacaaaggcctgaagatagaccagacatgtcatatgtggttctaatgctaaat 370

                                       
Query: 151 ggtgagaaaccattgccaagaccaaagg 178
           ||||||||||  |||||||  |||||||
Sbjct: 371 ggtgagaaacttttgccaaagccaaagg 398