Miyakogusa Predicted Gene
- Lj2g3v1019890.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v1019890.1 Non Chatacterized Hit- tr|B9RUE6|B9RUE6_RICCO
Nuclease, putative OS=Ricinus communis
GN=RCOM_0852190,57.5,0,Ribonuclease H-like,Ribonuclease H-like domain;
RNASE_H,Ribonuclease H domain; RETROELEMENT POL POLY,CUFF.35942.1
(861 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76039 weakly similar to UniRef100_A7PMF0 Cluster: Chr... 1179 0.0
gnl|LJGI|TC57817 weakly similar to UniRef100_A7Q2I1 Cluster: Chr... 466 e-130
gnl|LJGI|TC57481 similar to UniRef100_A7PMF0 Cluster: Chromosome... 333 1e-90
gnl|LJGI|TC82137 similar to UniRef100_A7Q2I1 Cluster: Chromosome... 149 3e-35
gnl|LJGI|FS321690 72 6e-12
>gnl|LJGI|TC76039 weakly similar to UniRef100_A7PMF0 Cluster: Chromosome chr14
scaffold_21, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_21, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (68%)
Length = 1424
Score = 1179 bits (595), Expect = 0.0
Identities = 601/603 (99%)
Strand = Plus / Plus
Query: 259 gaaccacatgcttatgtaggaacagcttcggttgtgaattcctcatcaaggagcttgcaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaaccacatgcttatgtaggaacagcttcggttgtgaattcctcatcaaggagcttgcaa 541
Query: 319 ggtttcaagcaatttagtgctagtgaggtgccagggtcatctacattttcaaatttaccg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggtttcaagcaatttagtgctagtgaggtgccagggtcatctacattttcaaatttaccg 601
Query: 379 gagcaccacataggcggtagtggatttcaggtcgagcggcctacttgtctttcttgtagc 438
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gagcaccacatgggcggtagtggatttcaggtcgagcggcctacttgtctttcttgtagc 661
Query: 439 cttgagtttgatggtgcttccaaaggaaatcccggacccgctggtgcaggagctgtgctg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cttgagtttgatggtgcttccaaaggaaatcccggacccgctggtgcaggagctgtgctg 721
Query: 499 cgtgctgatgatgggagcaaggtctatcggttgcgtgaaggagttggcactcaaaccaat 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cgtgctgatgatgggagcaaggtctatcggttgcgtgaaggagttggcactcaaaccaat 781
Query: 559 aattttgctgaatataggggtttaattttaggattgaaacatgccatcaaggaaggatac 618
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 782 aattttgctgaatataggggtttaattttaggattgaaacatgccatcaagggaggatac 841
Query: 619 aagcacattcaagtcaaaggagactccatgcttgtttgcaaccaggttcagggtttatgg 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aagcacattcaagtcaaaggagactccatgcttgtttgcaaccaggttcagggtttatgg 901
Query: 679 aaaatcaaaaaccagaatattgcttccttgtgtagtgaagctaaggagctgaagaataag 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 aaaatcaaaaaccagaatattgcttccttgtgtagtgaagctaaggagctgaagaataag 961
Query: 739 tttctatcattcaagatcaatcatattcctagggaatataactccgaagctgatgttcaa 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 tttctatcattcaagatcaatcatattcctagggaatataactccgaagctgatgttcaa 1021
Query: 799 gctaactttggcataagtctccgagctggtcaagttgaagaagttcgtgaggttccttaa 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 gctaactttggcataagtctccgagctggtcaagttgaagaagttcgtgaggttccttaa 1081
Query: 859 tgc 861
|||
Sbjct: 1082 tgc 1084
Score = 642 bits (324), Expect = 0.0
Identities = 339/344 (98%)
Strand = Plus / Plus
Query: 1 atggctgaggaaaaggacgctttcttcgttgtaaagaagggagatgttgttggcgtttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atggctgaggaaaaggacgctttcttcgttgtaaagaagggagatgttgttggcgtttac 199
Query: 61 aagtctttcagtgacattcaacctctacttgcatcatctgtacctggtgagactgtaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aagtctttcagtgacattcaacctctacttgcatcatctgtacctggtgagactgtaagt 259
Query: 121 gtttacaaagggtattctttacctcagaaaactgaggagtatcttgtctcacatgggctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtttacaaagggtattctttacctcagaaaactgaggagtatcttgtctcacatgggctc 319
Query: 181 aagggagctcgttactctattggtgctgctgatgtgcaggaggggctgtttggaaggctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagggagctcgttactctattggtgctgctgatgtgcaggaggggctgtttggaaggctt 379
Query: 241 gttgcttgtccttatcaggaaccacatgcttatgtaggaacagcttcggttgtgaattcc 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 gttgcttgtccttatcaggaaccacatgcttatgtaggaacagcttcggtcgtgaattcc 439
Query: 301 tcatcaaggagcttgcaaggtttcaagcaatttagtgctagtga 344
||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct: 440 tcatcaaagagcttgcaaggtgccaagcaatttaatgctagtga 483
>gnl|LJGI|TC57817 weakly similar to UniRef100_A7Q2I1 Cluster: Chromosome chr1
scaffold_46, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_46, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (47%)
Length = 855
Score = 466 bits (235), Expect = e-130
Identities = 386/435 (88%), Gaps = 1/435 (0%)
Strand = Plus / Plus
Query: 426 tctttcttgtagccttgagtttgatggtgcttccaaaggaaatcccggacccgctggtgc 485
||||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct: 160 tctttcttgtatccttgagtttgatggtgcttccagaggaaatcctggaccggctggtgc 219
Query: 486 aggagctgtgctgcgtgctgatgatgggagcaaggtctatcggttgcgtgaaggagttgg 545
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cggagctgtgctgcgtgctaaagatgggagcaaggtctatcggttgcgtgaaggagttgg 279
Query: 546 cactcaaaccaataattttgctgaatataggggtttaattttaggattgaaacatgccat 605
|| |||||| || || |||||||||||| | ||||||||||||||| | |||||||| ||
Sbjct: 280 cattcaaacaaacaactttgctgaatatcgaggtttaattttaggactaaaacatgctat 339
Query: 606 caaggaaggatacaagcacattcaagtcaaaggagactccatgcttgtttgcaaccaggt 665
| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 340 ccaggaaggatacgagcacattgatgtcaaaggagactccatgcttgtttgcaaccaggt 399
Query: 666 tcagggtttatggaaaatcaaaaaccagaatattgcttccttgtgtagtgaagctaagga 725
||| ||| | |||| |||||| || |||||||| |||| ||||||| ||||| |||||
Sbjct: 400 tcaaggtgtttggagaatcaacaatcagaatatggcttatttgtgtaatgaagtgaagga 459
Query: 726 gctgaagaataagtttctatcattcaagatcaatcatattcctagggaatataactccga 785
||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct: 460 gctgaggaataggtttctatcattcaagattagtcatattcctagggaatataactatga 519
Query: 786 agctgatgttcaagctaactttggcataagtctccgagctggtcaagttgaagaagttcg 845
|||||||||| |||| || | ||| ||| |||||||||||||||||||||| ||| ||
Sbjct: 520 agctgatgttgaagcaaatctaggcgtaaatctccgagctggtcaagttgaa-aagaacg 578
Query: 846 tgaggttccttaatg 860
|||| ||||||||||
Sbjct: 579 tgagattccttaatg 593
>gnl|LJGI|TC57481 similar to UniRef100_A7PMF0 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 860
Score = 333 bits (168), Expect = 1e-90
Identities = 370/434 (85%), Gaps = 5/434 (1%)
Strand = Plus / Plus
Query: 429 ttcttgtagccttgagtttgatggtgcttccaaaggaaatcccggacccgctggtgcagg 488
|||||||| |||||||||||||||| |||||||||||||||| ||| | |||||||||||
Sbjct: 156 ttcttgtacccttgagtttgatggttcttccaaaggaaatcctggatcagctggtgcagg 215
Query: 489 agctgtgctgcgtgctgatgatgggagcaaggtctatcggttgcgtgaaggagttggcac 548
|||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct: 216 agctgtgctgcgtgctgaagatggaagcaaggtctatc---tgcgtgaaggagttggcaa 272
Query: 549 tcaaaccaataattttgctgaatataggggtttaattttaggattgaaacatgccatcaa 608
|||||| ||||| ||||||||| | ||||||||||||||| ||||||||||| |
Sbjct: 273 tcaaacgaataaccaagctgaatatcgaggtttaattttaggactgaaacatgcccatga 332
Query: 609 ggaaggatacaagcacattcaagtcaaaggagactccatgcttgtttgcaaccaggttca 668
| |||||||| |||||||| | ||||||||||||||| |||||||||||| |||||| |
Sbjct: 333 gcaaggataccagcacattaatgtcaaaggagactcccagcttgtttgcaaacaggttga 392
Query: 669 gggtttatggaaa-atcaaaaaccagaatattgcttccttgtgtagtgaagctaaggagc 727
|||| ||||||| || ||| || |||||| |||||| |||||| |||||| |||||||
Sbjct: 393 aggttcatggaaagctcgaaatcc-gaatatagcttccctgtgtaatgaagcaaaggagc 451
Query: 728 tgaagaataagtttctatcattcaagatcaatcatattcctagggaatataactccgaag 787
|||||| ||||||| ||||||| | ||||||||| |||||||| |||||||||| ||||
Sbjct: 452 tgaagagcaagtttcaatcattcgacatcaatcatgttcctaggcaatataactctgaag 511
Query: 788 ctgatgttcaagctaactttggcataagtctccgagctggtcaagttgaagaagttcgtg 847
||||||||||||| || | || ||| ||||| ||||||||| ||||||||| | |||
Sbjct: 512 ctgatgttcaagcaaatctgggtgtaaatctcccagctggtcacgttgaagaatattgtg 571
Query: 848 aggttccttaatgc 861
|| |||||| ||||
Sbjct: 572 agtttccttgatgc 585
>gnl|LJGI|TC82137 similar to UniRef100_A7Q2I1 Cluster: Chromosome chr1 scaffold_46,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_46, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 1318
Score = 149 bits (75), Expect = 3e-35
Identities = 90/95 (94%)
Strand = Plus / Minus
Query: 6 tgaggaaaaggacgctttcttcgttgtaaagaagggagatgttgttggcgtttacaagtc 65
|||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 595 tgaggaaaaggatgctttcttcgttgtaaaaaagggagatgttgttggtgtctacaagtc 536
Query: 66 tttcagtgacattcaacctctacttgcatcatctg 100
|||||||||||||||||||||||||||||| ||||
Sbjct: 535 tttcagtgacattcaacctctacttgcatcttctg 501
>gnl|LJGI|FS321690
Length = 432
Score = 71.9 bits (36), Expect = 6e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 63 gtctttcagtgacattcaacctctacttgcatcatctgta 102
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 410 gtctttcagtgacattcaacctctacttgcatcttctgta 371