Miyakogusa Predicted Gene

Lj2g3v0561250.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0561250.1 Non Chatacterized Hit- tr|F6HHC1|F6HHC1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,64.79,0.000000000000002,Ribonuclease H-like,Ribonuclease H-like
domain; CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT,NULL; CAF1,Ri,70725_g.1
         (304 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62669 similar to UniRef100_Q0PY49 Cluster: CCR4 assoc...    62   2e-09

>gnl|LJGI|TC62669 similar to UniRef100_Q0PY49 Cluster: CCR4 associated factor
           1-related protein; n=1; Capsicum annuum|Rep: CCR4
           associated factor 1-related protein - Capsicum annuum
           (Bell pepper), partial (94%)
          Length = 971

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 48  gctcaacctcatccaagttggcctcacaccctctgacgcggccgacaacctccctgacct 107
           ||||||||||||||| ||||||||||| | | | ||||| ||||  ||||||||||||||
Sbjct: 321 gctcaacctcatccaggttggcctcactctcaccgacgccgccggaaacctccctgacct 380

              
Query: 108 cgg 110
           |||
Sbjct: 381 cgg 383