Miyakogusa Predicted Gene
- Lj1g3v5060590.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v5060590.1 Non Chatacterized Hit- tr|B4F8L8|B4F8L8_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,32.47,6e-19,no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
recognition motif domain; SUBFAMILY N,CUFF.33956.1
(822 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69459 weakly similar to UniRef100_A7PXT7 Cluster: Chr... 1572 0.0
gnl|LJGI|TC81994 similar to UniRef100_Q2HTC3 Cluster: RNA-bindin... 678 0.0
gnl|LJGI|TC62000 weakly similar to UniRef100_A7PXT7 Cluster: Chr... 78 1e-13
>gnl|LJGI|TC69459 weakly similar to UniRef100_A7PXT7 Cluster: Chromosome chr15
scaffold_37, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (66%)
Length = 1129
Score = 1572 bits (793), Expect = 0.0
Identities = 805/809 (99%)
Strand = Plus / Plus
Query: 14 ggctgggcttcaatacaatggcagctaacgccaccctgtctctctccttcacctccttac 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggctgggcttcaatacaatggcagctaacgccaccctgtctctctccttcacctccttac 62
Query: 74 tgaatcacaacctccaattccgacttccctctaaacgcttcgtttcatcttcttcggtgc 133
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tcaatcacaacctccaattccgacttccctctaaacgcttcgtttcatcttcttcggtgc 122
Query: 134 cttttccttccctgcgtcttgttgcggggaagggtagggtttgcagttgcactgctttgg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cttttccttccctgcgtcttgttgcggggaagggtagggtttgcagttgcactgctttgg 182
Query: 194 cggcagtggtggatgaagaaacggcggttgcagacgtcggagagcaagtaaacgatgagg 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cggcagtggtggatgaagaaacggcggttgcagacgtcggagagcaagtaaacgatgagg 242
Query: 254 aaggaagaccgaccgaagtttatgtctgcaaccttcctagaagctgtgacacggaacagc 313
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agggaagaccgaccgaagtttatgtctgcaaccttcctagaagctgtgacacggaacagc 302
Query: 314 tacttcccatgttcaggcctcacggaaccattatatctgccgaggtttgccggcatgccc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tacttcccatgttcaggcctcacggaaccattatatctgccgaggtttgccggcatgccc 362
Query: 374 agagcggtgaaagtaaagggtgtgcttatgtcacaatgtcatctattgtctctgcaaaaa 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agagcggtgaaagtaaagggtgtgcttatgtcacaatgtcatctattgtctctgcaaaaa 422
Query: 434 atgcagtttctgcattggatggattggatgttggtgggcgagaaatgcgggttagatttt 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atgcagtttctgcattggatggattggatgttggtgggcgagaaatgcgggttagatttt 482
Query: 494 ctgttgaggtgaatcctagggggaggaatcttgagacgatgaactcgtcacccagaagaa 553
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 483 ctgttgaggtgaatcctagggggaggaatcttgaggcgatgaactcgtcgcccagaagaa 542
Query: 554 ctatatactatgaagctcctcataagctgtatgttgggaatcttgccatgtctgctacac 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctatatactatgaagctcctcataagctgtatgttgggaatcttgccatgtctgctacac 602
Query: 614 ctgaagacgtgagatatctttttgctagatttggtaatgtggccagtgtgaggctcttgc 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctgaagacgtgagatatctttttgctagatttggtaatgtggccagtgtgaggctcttgc 662
Query: 674 aagatttgaaacaaggcagaagacgagcctatgcttttatctcttatctttctgagagag 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aagatttgaaacaaggcagaagacgagcctatgcttttatctcttatctttctgagagag 722
Query: 734 agcgtgatgcagcaatgtccctcaatggaactgaattttgtggtcgtaaaattgtggtta 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 agcgtgatgcagcaatgtccctcaatggaactgaattttgtggtcgtaaaattgtggtta 782
Query: 794 gacaaggtgtagacagagaaagctgagac 822
|||||||||||||||||||||||||||||
Sbjct: 783 gacaaggtgtagacagagaaagctgagac 811
>gnl|LJGI|TC81994 similar to UniRef100_Q2HTC3 Cluster: RNA-binding region RNP-1; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 -
Medicago truncatula (Barrel medic), partial (24%)
Length = 406
Score = 678 bits (342), Expect = 0.0
Identities = 348/350 (99%)
Strand = Plus / Plus
Query: 11 cttggctgggcttcaatacaatggcagctaacgccaccctgtctctctccttcacctcct 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 cttggctgggcttcaatacaatggcagctaacgccaccctgtctctctccttcacctcct 109
Query: 71 tactgaatcacaacctccaattccgacttccctctaaacgcttcgtttcatcttcttcgg 130
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 110 tactcaatcacaacctccaattccgacttccctctaaacgcttcgtttcatcttcgtcgg 169
Query: 131 tgccttttccttccctgcgtcttgttgcggggaagggtagggtttgcagttgcactgctt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tgccttttccttccctgcgtcttgttgcggggaagggtagggtttgcagttgcactgctt 229
Query: 191 tggcggcagtggtggatgaagaaacggcggttgcagacgtcggagagcaagtaaacgatg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tggcggcagtggtggatgaagaaacggcggttgcagacgtcggagagcaagtaaacgatg 289
Query: 251 aggaaggaagaccgaccgaagtttatgtctgcaaccttcctagaagctgtgacacggaac 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aggaaggaagaccgaccgaagtttatgtctgcaaccttcctagaagctgtgacacggaac 349
Query: 311 agctacttcccatgttcaggcctcacggaaccattatatctgccgaggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agctacttcccatgttcaggcctcacggaaccattatatctgccgaggtt 399
>gnl|LJGI|TC62000 weakly similar to UniRef100_A7PXT7 Cluster: Chromosome chr15
scaffold_37, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (57%)
Length = 1322
Score = 77.8 bits (39), Expect = 1e-13
Identities = 144/179 (80%)
Strand = Plus / Plus
Query: 323 tgttcaggcctcacggaaccattatatctgccgaggtttgccggcatgcccagagcggtg 382
|||||| |||| | |||||||||||||||| ||||||| | | |||| ||| ||||
Sbjct: 413 tgttcaagccttatggaaccattatatctgttgaggtttccagaaatgctgagactggtg 472
Query: 383 aaagtaaagggtgtgcttatgtcacaatgtcatctattgtctctgcaaaaaatgcagttt 442
|||||| || |||| |||||||| |||| ||| || ||| ||||||| |||| ||
Sbjct: 473 aaagtaggggatgtggttatgtcataatggaatccataaactcagcaaaaagtgcaattg 532
Query: 443 ctgcattggatggattggatgttggtgggcgagaaatgcgggttagattttctgttgag 501
||||||||||||||| |||||||| ||||| ||| ||||||||| |||||| ||||||
Sbjct: 533 ctgcattggatggatcagatgttggggggcgcgaattgcgggttaaattttcagttgag 591
Score = 52.0 bits (26), Expect = 6e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 736 cgtgatgcagcaatgtccctcaatggaactgaattttgtggtcgta 781
||||||||||||||||| || |||||||| ||||||| ||| ||||
Sbjct: 837 cgtgatgcagcaatgtctcttaatggaacagaattttatggccgta 882