Miyakogusa Predicted Gene
- Lj1g3v5060520.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v5060520.1 Non Chatacterized Hit- tr|I1NCQ2|I1NCQ2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41436 PE,85.6,0,RNA
recognition motif,RNA recognition motif domain, eukaryote; RNA
recognition motif,RNA recognition,CUFF.33957.1
(1452 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59691 similar to UniRef100_Q2HTD6 Cluster: RNA-bindin... 1550 0.0
gnl|LJGI|TC64745 similar to UniRef100_Q2HTD6 Cluster: RNA-bindin... 761 0.0
gnl|LJGI|TC58721 similar to UniRef100_Q2HTD6 Cluster: RNA-bindin... 373 e-102
gnl|LJGI|BW597259 similar to UniRef100_Q2HTD6 Cluster: RNA-bindi... 256 3e-67
gnl|LJGI|CB826709 homologue to UniRef100_Q2HTD6 Cluster: RNA-bin... 123 3e-27
gnl|LJGI|FS322226 homologue to UniRef100_Q2HTD6 Cluster: RNA-bin... 107 2e-22
gnl|LJGI|FS322998 similar to UniRef100_Q2HS59 Cluster: RNA-bindi... 76 7e-13
gnl|LJGI|TC82005 similar to UniRef100_A7QFA8 Cluster: Chromosome... 52 1e-05
>gnl|LJGI|TC59691 similar to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic), partial (45%)
Length = 1132
Score = 1550 bits (782), Expect = 0.0
Identities = 785/786 (99%)
Strand = Plus / Plus
Query: 667 aaggaccctcaaaatccaagcaagaatcgtgggtttgcttttgttttgtattacaataat 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aaggaccctcaaaatccaagcaagaatcgtgggtttgcttttgttttgtattacaataat 61
Query: 727 gcatgtgctgattattcacggcaaaagatgtcaagttcgagttttaagctatatggaaat 786
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gcgtgtgctgattattcacggcaaaagatgtcaagttcgagttttaagctatatggaaat 121
Query: 787 acaccaactgtcacatgggcagatccaaagaattcacctgaccattctgcttcttcacag 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 acaccaactgtcacatgggcagatccaaagaattcacctgaccattctgcttcttcacag 181
Query: 847 gttaaagctctatatgtgaaaaacataccagagaatgtcactactgatcaactgaaggaa 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gttaaagctctatatgtgaaaaacataccagagaatgtcactactgatcaactgaaggaa 241
Query: 907 ctattccgtcgtcatggggaagtaacaaaagtggtcatgccaccaggcaaaattggtggg 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctattccgtcgtcatggggaagtaacaaaagtggtcatgccaccaggcaaaattggtggg 301
Query: 967 aaacgggattttggtttcattcattttgctgagaggtcaagtgcattgaaagcagtaaaa 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaacgggattttggtttcattcattttgctgagaggtcaagtgcattgaaagcagtaaaa 361
Query: 1027 gaaacagagaaatatgaaattgatggccaagtgcttgaagttgttcttgctaagcctcaa 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaaacagagaaatatgaaattgatggccaagtgcttgaagttgttcttgctaagcctcaa 421
Query: 1087 gctgaaaagagacctgatgcttatgccttcaatcctggagttcacccaaaccatcttcca 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gctgaaaagagacctgatgcttatgccttcaatcctggagttcacccaaaccatcttcca 481
Query: 1147 catgctggttacggtagctattctggaaatccttatggctctttagggactggctacggg 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 catgctggttacggtagctattctggaaatccttatggctctttagggactggctacggg 541
Query: 1207 gctgctcctgcttatcaacagccaatgatatatggcagaggtccaatgccagcaggaatg 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gctgctcctgcttatcaacagccaatgatatatggcagaggtccaatgccagcaggaatg 601
Query: 1267 cagatggttcccatggtattgccagatggtcgaatcggctatgtccttcaacagcctggt 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cagatggttcccatggtattgccagatggtcgaatcggctatgtccttcaacagcctggt 661
Query: 1327 gtacaggttcctgctgcccgacctcgcagaaatgaacgtagcaatggtccaagtggtcaa 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtacaggttcctgctgcccgacctcgcagaaatgaacgtagcaatggtccaagtggtcaa 721
Query: 1387 gctgggcgaggtggcggcggcggtaacgatgaaggcaatcgtagcagaaggtttcgacct 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gctgggcgaggtggcggcggcggtaacgatgaaggcaatcgtagcagaaggtttcgacct 781
Query: 1447 tattag 1452
||||||
Sbjct: 782 tattag 787
>gnl|LJGI|TC64745 similar to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic), partial (30%)
Length = 706
Score = 761 bits (384), Expect = 0.0
Identities = 391/392 (99%), Gaps = 1/392 (0%)
Strand = Plus / Plus
Query: 129 aaatgctgaaggtagtgttgaagaacatgaatatgaagagttggcagcggaggctgatgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaatgctgaaggtagtgttgaagaacatgaatatgaagagttggcagcggaggctgatgg 374
Query: 189 gaaagaccaattggctgaagcagaaaagggtgacattgacactgaatttgtggaggaaga 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaaagaccaattggctgaagcagaaaagggtgacattgacactgaatttgtggaggaaga 434
Query: 249 tggggaaaagccacctctcattgatgaagatgagaaacaaaagcatgatgaacttcttgc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tggggaaaagccacctctcattgatgaagatgagaaacaaaagcatgatgaacttcttgc 494
Query: 309 ccttcctcctcatggttctgaagtctttattggtggacttcctcgggatgcatgtgaaga 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ccttcctcctcatggttctgaagtctttattggtggacttcctcgggatgcatgtgaaga 554
Query: 369 tgatttaagggaattgtgcgaaccaatgggtgatattcttgaggtgcgattgatgaaaga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgatttaagggaattgtgcgaaccaatgggtgatattcttgaggtgcgattgatgaaaga 614
Query: 429 tagggacactggggacaacaagggttatgcttttgtggctttc-aaaacaaaagaggagg 487
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 615 tagggacactggggacaacaagggttatgcttttgtggctttcaaaaacaaaagaggagg 674
Query: 488 cacaaaaggctattgaagacatacataacaaa 519
||||||||||||||||||||||||||||||||
Sbjct: 675 cacaaaaggctattgaagacatacataacaaa 706
Score = 107 bits (54), Expect = 2e-22
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1 atgtcagaaggtgcagaaattgatgagcgtgtcgaccttgatgaggaaaactat 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atgtcagaaggtgcagaaattgatgagcgtgtcgaccttgatgaggaaaactat 240
>gnl|LJGI|TC58721 similar to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic), partial (13%)
Length = 797
Score = 373 bits (188), Expect = e-102
Identities = 218/228 (95%)
Strand = Plus / Plus
Query: 620 aagccgtcgatggtgttggtccaggagttgaaagcatcgagctcataaaggaccctcaaa 679
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 567 aagccgtcgagggtgttggtccaggagttgaaagcatcgagctcattaaggaccctcaaa 626
Query: 680 atccaagcaagaatcgtgggtttgcttttgttttgtattacaataatgcatgtgctgatt 739
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 627 atccaagtaagaatcgtgggtttgcttttgttttgtattacaacaatgcatgtgctgatt 686
Query: 740 attcacggcaaaagatgtcaagttcgagttttaagctatatggaaatacaccaactgtca 799
||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 687 attcacgacaaaagatgccaagttcgagttttaatctatgtggaaatacaccaactgtca 746
Query: 800 catgggcagatccaaagaattcacctgaccattctgcttcttcacagg 847
||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 747 gatgggcagatccaaagaattcacctgatcattctgcttcttcacagg 794
>gnl|LJGI|BW597259 similar to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic), partial (5%)
Length = 484
Score = 256 bits (129), Expect = 3e-67
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 140 gtagtgttgaagaacatgaatatgaagagttggcagcggaggctgatgggaaagaccaat 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtagtgttgaagaacatgaatatgaagagttggcagcggaggctgatgggaaagaccaat 415
Query: 200 tggctgaagcagaaaagggtgacattgacactgaatttgtggaggaagatggggaaaagc 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tggctgaagcagaaaagggtgacattgacactgaatttgtggaggaagatggggaaaagc 475
Query: 260 cacctctca 268
|||||||||
Sbjct: 476 cacctctca 484
>gnl|LJGI|CB826709 homologue to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1
(RNA recognition motif); Calcium-binding EF- hand; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic), partial (11%)
Length = 432
Score = 123 bits (62), Expect = 3e-27
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 129 aaatgctgaaggtagtgttgaagaacatgaatatgaagagttggcagcggaggctgatgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaatgctgaaggtagtgttgaagaacatgaatatgaagagttggcagcggaggctgatgg 430
Query: 189 ga 190
||
Sbjct: 431 ga 432
Score = 107 bits (54), Expect = 2e-22
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1 atgtcagaaggtgcagaaattgatgagcgtgtcgaccttgatgaggaaaactat 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atgtcagaaggtgcagaaattgatgagcgtgtcgaccttgatgaggaaaactat 296
>gnl|LJGI|FS322226 homologue to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1
(RNA recognition motif); Calcium-binding EF- hand; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic), partial (9%)
Length = 416
Score = 107 bits (54), Expect = 2e-22
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1 atgtcagaaggtgcagaaattgatgagcgtgtcgaccttgatgaggaaaactat 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atgtcagaaggtgcagaaattgatgagcgtgtcgaccttgatgaggaaaactat 305
Score = 73.8 bits (37), Expect = 3e-12
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 129 aaatgctgaaggtagtgttgaagaacatgaatatgaa 165
|||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaatgctgaaggtagtgttgaagaacatgaatatgaa 416
>gnl|LJGI|FS322998 similar to UniRef100_Q2HS59 Cluster: RNA-binding region RNP-1; n=1;
Medicago truncatula|Rep: RNA-binding region RNP-1 -
Medicago truncatula (Barrel medic), partial (23%)
Length = 731
Score = 75.8 bits (38), Expect = 7e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 271 gatgaagatgagaaacaaaagcatgatgaacttcttgcccttcctcctcatggttctgaa 330
||||| |||||||| ||||||||| |||||||||| | |||||||||||||| ||||||
Sbjct: 478 gatgatgatgagaagaaaaagcatgctgaacttctttctcttcctcctcatgggtctgaa 537
Query: 331 gtctttattggtgg 344
|||| ||||||||
Sbjct: 538 gtctacattggtgg 551
>gnl|LJGI|TC82005 similar to UniRef100_A7QFA8 Cluster: Chromosome undetermined
scaffold_87, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_87, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(31%)
Length = 829
Score = 52.0 bits (26), Expect = 1e-05
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 988 cattttgctgagaggtcaagtgcattgaaagcagtaaaagaaacagagaaatatgaaatt 1047
|||||| |||| ||||||||||| |||| ||| | || | ||||||||||||||||||
Sbjct: 87 catttttctgataggtcaagtgccatgaaggcattgaagaatacagagaaatatgaaatt 146
Query: 1048 gatggc 1053
||||||
Sbjct: 147 gatggc 152