Miyakogusa Predicted Gene
- Lj1g3v4717440.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4717440.2 tr|G7KQW9|G7KQW9_MEDTR Signal recognition
particle 54 kDa protein OS=Medicago truncatula
GN=MTR_7g10,92.5,0,SRP54,Signal recognition particle, SRP54 subunit,
GTPase domain; SIGNAL RECOGNITION PARTICLE PROTEIN,CUFF.33101.2
(720 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66087 homologue to UniRef100_A2Q2E1 Cluster: GTP-bind... 470 e-132
gnl|LJGI|TC64324 similar to UniRef100_A2Q2E3 Cluster: Signal pep... 283 7e-76
>gnl|LJGI|TC66087 homologue to UniRef100_A2Q2E1 Cluster: GTP-binding signal recognition
particle SRP54, G-domain; n=1; Medicago truncatula|Rep:
GTP-binding signal recognition particle SRP54, G-domain -
Medicago truncatula (Barrel medic), partial (69%)
Length = 1025
Score = 470 bits (237), Expect = e-132
Identities = 268/273 (98%), Gaps = 4/273 (1%)
Strand = Plus / Plus
Query: 1 atgctagtcgctggggatatttacagaccggctgctattgaccagcttactattttgggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 atgctagtcgctggggatatttacagaccggctgctattgaccagcttactattttgggc 814
Query: 61 aaacaggtgggtgtgcctgtctatacagcagggaccgatgttaaaccttcagaaattgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aaacaggtgggtgtgcctgtctatacagcagggaccgatgttaaaccttcagaaattgct 874
Query: 121 agacaaggtttagaagaggccaaaaagaagaaaattgatgtggttattgttgacactgct 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 875 agacaaggtttagaagaggcc-aaaagaagaaaattgatgtggttattgttgacactgct 933
Query: 181 ggtaggctgcagatagacaaagctatgatggatgagttaaaagaagttaagaagtcattg 240
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 934 ggta-gctgcagatagacaaagctatgatggatgagtt-aaagaagttaagaagtcattg 991
Query: 241 aatccaacagaagtcttgctagttgtggatgca 273
||||||||||||||||||||||||||||||||
Sbjct: 992 -atccaacagaagtcttgctagttgtggatgca 1023
>gnl|LJGI|TC64324 similar to UniRef100_A2Q2E3 Cluster: Signal peptide binding (SRP54)
M-domain; n=1; Medicago truncatula|Rep: Signal peptide
binding (SRP54) M-domain - Medicago truncatula (Barrel
medic), partial (74%)
Length = 888
Score = 283 bits (143), Expect = 7e-76
Identities = 170/175 (97%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 546 agatgctgaaaaactgcaagagaagatcatgagtgcaaagtttgactttaacgattttct 605
|||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||| ||
Sbjct: 13 agatgctgaaaa-ctgcaagagaagatcgtgagtgcatagtt-gactttaacgattt-ct 69
Query: 606 aaagcaaactcgtgctgttgcacaaatgggttctgtgtctcgtgttatgggaatgattcc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaagcaaactcgtgctgttgcacaaatgggttctgtgtctcgtgttatgggaatgattcc 129
Query: 666 tggtatgtcgaaggttactcctgctcaaattcgagaagcagagaagaatttgaag 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tggtatgtcgaaggttactcctgctcaaattcgagaagcagagaagaatttgaag 184