Miyakogusa Predicted Gene

Lj1g3v4528610.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4528610.1 Non Chatacterized Hit- tr|Q60B25|Q60B25_METCA
Putative uncharacterized protein OS=Methylococcus
caps,50,4e-19,Cupin_3,Domain of unknown function DUF861, cupin-3;
RmlC-like cupins,RmlC-like cupin domain; no desc,CUFF.32582.1
         (339 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66138 similar to UniRef100_A7Q7Q9 Cluster: Chromosome...    58   4e-08
gnl|LJGI|FS340010 similar to UniRef100_A7P490 Cluster: Chromosom...    50   9e-06
gnl|LJGI|TC76852 similar to UniRef100_A9V163 Cluster: Predicted ...    50   9e-06
gnl|LJGI|TC64381 weakly similar to UniRef100_A7P490 Cluster: Chr...    50   9e-06

>gnl|LJGI|TC66138 similar to UniRef100_A7Q7Q9 Cluster: Chromosome chr18 scaffold_61,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_61, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (55%)
          Length = 616

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 250 agttgcacttgggatgtatctgttgcagtggacaagtacta 290
           ||||||||||||||||| |||||||| ||||||||| ||||
Sbjct: 426 agttgcacttgggatgtgtctgttgctgtggacaagcacta 466


>gnl|LJGI|FS340010 similar to UniRef100_A7P490 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (5%)
          Length = 797

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 300 atcatcatcatcttcttcatcatcaccat 328
           |||||||||||||||||| ||||||||||
Sbjct: 54  atcatcatcatcttcttcttcatcaccat 26


>gnl|LJGI|TC76852 similar to UniRef100_A9V163 Cluster: Predicted protein; n=1;
           Monosiga brevicollis MX1|Rep: Predicted protein -
           Monosiga brevicollis MX1, partial (3%)
          Length = 1009

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 300 atcatcatcatcttcttcatcatca 324
           |||||||||||||||||||||||||
Sbjct: 877 atcatcatcatcttcttcatcatca 853


>gnl|LJGI|TC64381 weakly similar to UniRef100_A7P490 Cluster: Chromosome chr1
           scaffold_5, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (14%)
          Length = 926

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 300 atcatcatcatcttcttcatcatcaccat 328
           |||||||||||||||||| ||||||||||
Sbjct: 58  atcatcatcatcttcttcttcatcaccat 30