Miyakogusa Predicted Gene

Lj1g3v3981460.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v3981460.1 Non Chatacterized Hit- tr|K3YRK4|K3YRK4_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si016898,25.33,7e-18,GD2B,NULL; CTL TRANSPORTER,Choline
transporter-like; Choline_transpo,Choline transporter-like;
seg,N,CUFF.31738.1
         (1395 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73605 similar to UniRef100_Q913Z2 Cluster: Minor stru...    78   2e-13

>gnl|LJGI|TC73605 similar to UniRef100_Q913Z2 Cluster: Minor structural protein;
          n=1; Human calicivirus NLV/VA98387/1998|Rep: Minor
          structural protein - Human calicivirus
          NLV/VA98387/1998, partial (7%)
          Length = 914

 Score = 77.8 bits (39), Expect = 2e-13
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                         
Query: 4  gctatgatgaacaacttcaacatcacaacacaaccacagctcctcca 50
          |||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 17 gctatgttgaacaacttcaacatcacaacacaaccacagatcctcca 63