Miyakogusa Predicted Gene
- Lj1g3v2628740.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v2628740.3 tr|G7L3K0|G7L3K0_MEDTR DEAD-box ATP-dependent RNA
helicase OS=Medicago truncatula GN=MTR_7g076820
PE,82.35,0.000000000000003,DEAD-like helicases superfamily,Helicase,
superfamily 1/2, ATP-binding domain; helicase superfamily
,CUFF.29479.3
(1566 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC75782 homologue to UniRef100_A7QIS9 Cluster: Chromoso... 1195 0.0
gnl|LJGI|AV774830 similar to UniRef100_Q7XMK8 Cluster: DEAD-box ... 837 0.0
gnl|LJGI|TC62260 similar to UniRef100_Q109G2 Cluster: DEAD-box A... 710 0.0
gnl|LJGI|TC62152 UniRef100_Q8RXK6 Cluster: DEAD-box ATP-dependen... 428 e-119
gnl|LJGI|TC81054 homologue to UniRef100_A7QIS9 Cluster: Chromoso... 351 8e-96
gnl|LJGI|TC58768 homologue to UniRef100_A7QIS9 Cluster: Chromoso... 325 5e-88
gnl|LJGI|FS361529 303 2e-81
gnl|LJGI|FS327597 similar to UniRef100_Q750L9 Cluster: AGL062Cp;... 242 6e-63
gnl|LJGI|TC75651 homologue to UniRef100_A7QIS9 Cluster: Chromoso... 214 1e-54
>gnl|LJGI|TC75782 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2 scaffold_105,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_105, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 1048
Score = 1195 bits (603), Expect = 0.0
Identities = 603/603 (100%)
Strand = Plus / Plus
Query: 964 caaatcctgatgtattcagctacatatcctgttactgtaaaggacttcaaggaaagatat 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 caaatcctgatgtattcagctacatatcctgttactgtaaaggacttcaaggaaagatat 61
Query: 1024 cttcgtaagccgtatgtcattaaccttatggatgagctaactctgaagggtattacacaa 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cttcgtaagccgtatgtcattaaccttatggatgagctaactctgaagggtattacacaa 121
Query: 1084 ttctatgcatttgtggaagagaggcagaaagtccactgcctaaatactctcttctctaag 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttctatgcatttgtggaagagaggcagaaagtccactgcctaaatactctcttctctaag 181
Query: 1144 cttcaaataaaccaatcaatcatcttctgcaattcggtgaatcgggttgaactccttgcc 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cttcaaataaaccaatcaatcatcttctgcaattcggtgaatcgggttgaactccttgcc 241
Query: 1204 aagaaaatcacagaacttggatattcatgtttctatattcatgcaaaaatgttacaagac 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aagaaaatcacagaacttggatattcatgtttctatattcatgcaaaaatgttacaagac 301
Query: 1264 caccgtaatagagtttttcatgacttccgcaacggtgcctgcaggaatcttgtttgcact 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caccgtaatagagtttttcatgacttccgcaacggtgcctgcaggaatcttgtttgcact 361
Query: 1324 gatcttttcactaggggaatagatatccaagcagtcaatgttgttattaattttgatttt 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gatcttttcactaggggaatagatatccaagcagtcaatgttgttattaattttgatttt 421
Query: 1384 cccaagaacgcagaaacttatctgcacagggttggtcgttcagggagatatgggcacctt 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cccaagaacgcagaaacttatctgcacagggttggtcgttcagggagatatgggcacctt 481
Query: 1444 ggtttagcagtgaacttgatcacctatgaggatcgcttcaatttatataggattgaacaa 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggtttagcagtgaacttgatcacctatgaggatcgcttcaatttatataggattgaacaa 541
Query: 1504 gagctcggcactgaaataaaacaaattccgccacacattgaccaggcaatatattgtaga 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gagctcggcactgaaataaaacaaattccgccacacattgaccaggcaatatattgtaga 601
Query: 1564 tag 1566
|||
Sbjct: 602 tag 604
>gnl|LJGI|AV774830 similar to UniRef100_Q7XMK8 Cluster: DEAD-box ATP-dependent RNA
helicase 6; n=1; Oryza sativa Japonica Group|Rep:
DEAD-box ATP-dependent RNA helicase 6 - Oryza sativa
subsp. japonica (Rice), partial (34%)
Length = 524
Score = 837 bits (422), Expect = 0.0
Identities = 500/518 (96%), Gaps = 6/518 (1%)
Strand = Plus / Plus
Query: 580 ggaacaggcaaaactgctgcgttttgtattcccgcattggaaaaaattgatcacgataac 639
||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||
Sbjct: 8 ggaacaggcaaaactgctgcgttc-gtattcccgcataggaaaaaatcgatcacgataac 66
Query: 640 aatgttattcaagttgttatactggtcccaacaagagaattggctttgcaaacatcacaa 699
|||||||||||||| |||||||||| | ||||||||||||||||| |||||||||||||
Sbjct: 67 aatgttattcaagtagttatactggacgaaacaagagaattggcttcgcaaacatcacaa 126
Query: 700 gtgtgtaaagagcttggaaagcatttgaaaattcaagttatggttacaacaggtggtacc 759
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gtgtgtatagagcttggaaagcatttgaaaattcaagttatggttacaacaggtggtacc 186
Query: 760 agcct-gaaag-atgatatcatgcgtttatatcaaccagttcatttgctagttgg-aact 816
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 187 agcctagaaagtatgatatcatgcgtttatatcaaccagttcatttgctagttggcaagg 246
Query: 817 ccaggaa-gaatactagatcttgcaaagaaaggtgtttgcattctgaaag-attgctcta 874
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 247 ccaggaaagaatactagatcttgcaaagaaaggtgtttgcattctgaaagcattgctcta 306
Query: 875 tgcttgttatggatgaggctgataagcttctctcccctgagttccaaccttcaatagagc 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgcttgttatggatgaggctgataagcttctctcccctgagttccaaccttcaatagagc 366
Query: 935 agctgattcaatttctttctcctaaccgtcaaatcctgatgtattcagctacatatcctg 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agctgattcaatttctttctcctaaccgtcaaatcctgatgtattcagctacatatcctg 426
Query: 995 ttactgtaaaggacttcaaggaaagatatcttcgtaagccgtatgtcattaaccttatgg 1054
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgactgtaaaggacttcaaggaaagatatcttcgtaagccgtatgtcattaaccttatgg 486
Query: 1055 atgagctaactctgaagggtattacacaattctatgca 1092
||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atgagctaactctgaagggtattacacaattctatgca 524
>gnl|LJGI|TC62260 similar to UniRef100_Q109G2 Cluster: DEAD-box ATP-dependent RNA
helicase 12; n=1; Oryza sativa Japonica Group|Rep:
DEAD-box ATP-dependent RNA helicase 12 - Oryza sativa
subsp. japonica (Rice), partial (26%)
Length = 981
Score = 710 bits (358), Expect = 0.0
Identities = 358/358 (100%)
Strand = Plus / Plus
Query: 268 tggttgagaaggacccagttgggtggtaatgacaccaacgttgttgaggaagttgagaag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggttgagaaggacccagttgggtggtaatgacaccaacgttgttgaggaagttgagaag 683
Query: 328 actgtacagtctgaatctgccgaccctagttcacaagattggaaggcaagactaaagatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 actgtacagtctgaatctgccgaccctagttcacaagattggaaggcaagactaaagatt 743
Query: 388 ccccctccagatacacgctaccagacagaggatgtaacagcaactaaaggaaatgaattt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccccctccagatacacgctaccagacagaggatgtaacagcaactaaaggaaatgaattt 803
Query: 448 gaggattactttttgaagcgtgagctgctcatgggaatttatgagaagggttttgaaaag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaggattactttttgaagcgtgagctgctcatgggaatttatgagaagggttttgaaaag 863
Query: 508 ccatctcctattcaagaagaaagcattcctattgctcttactggtagtgacattcttgct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ccatctcctattcaagaagaaagcattcctattgctcttactggtagtgacattcttgct 923
Query: 568 agggcaaaaaatggaacaggcaaaactgctgcgttttgtattcccgcattggaaaaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 agggcaaaaaatggaacaggcaaaactgctgcgttttgtattcccgcattggaaaaaa 981
Score = 242 bits (122), Expect = 6e-63
Identities = 171/194 (88%)
Strand = Plus / Plus
Query: 1 atgaacaacaacaatagagcgagatgcccacctcctgggatcgggttaggtcgaggtaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atgaacaacaacaatagagcgagatgcccacctcctgggatcgggttaggtcgaggtaac 416
Query: 61 ggtggcgtcggcggtggtggttttaactcgaaccctgggtttcaaccaaggccacatnnn 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggtggcggcggcggtggtggttttaactcgaaccctgggtttcaaccaaggccacatcaa 476
Query: 121 nnnnnnnnnnnnnnnnntcagtatgtgcagaggcacatgatgccgaatcaacagcagtcc 180
||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 477 caacaacaacaacaacatcagtatgtgcagaggcacatgatgccgaatcaacagcagtac 536
Query: 181 caccagcggcagca 194
||||||| ||||||
Sbjct: 537 caccagcagcagca 550
>gnl|LJGI|TC62152 UniRef100_Q8RXK6 Cluster: DEAD-box ATP-dependent RNA helicase 8; n=2;
Arabidopsis thaliana|Rep: DEAD-box ATP-dependent RNA
helicase 8 - Arabidopsis thaliana (Mouse-ear cress),
partial (21%)
Length = 1152
Score = 428 bits (216), Expect = e-119
Identities = 285/308 (92%)
Strand = Plus / Plus
Query: 1252 atgttacaagaccaccgtaatagagtttttcatgacttccgcaacggtgcctgcaggaat 1311
||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||| | |||
Sbjct: 4 atgttgcaagaccatcgtaatagagtatttcatgacttccgcaatggtgcctgccgaaat 63
Query: 1312 cttgtttgcactgatcttttcactaggggaatagatatccaagcagtcaatgttgttatt 1371
|||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 64 cttgtttgtactgatctttttactaggggaatagacatccaagcagttaatgttgttatt 123
Query: 1372 aattttgattttcccaagaacgcagaaacttatctgcacagggttggtcgttcagggaga 1431
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 124 aattttgattttcccaagaatgcagaaacttatttgcacagggttggtcgttcagggagg 183
Query: 1432 tatgggcaccttggtttagcagtgaacttgatcacctatgaggatcgcttcaatttatat 1491
| ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 184 tttggccaccttggtttagcagtgaacttgatcacttatgaggatcgctttaatttatat 243
Query: 1492 aggattgaacaagagctcggcactgaaataaaacaaattccgccacacattgaccaggca 1551
|||||||||||||| || ||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 244 aggattgaacaagaacttggcactgaaatcaagcaaattccgccacacattgatcaggca 303
Query: 1552 atatattg 1559
|| |||||
Sbjct: 304 atttattg 311
>gnl|LJGI|TC81054 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2 scaffold_105,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_105, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 346
Score = 351 bits (177), Expect = 8e-96
Identities = 299/337 (88%), Gaps = 2/337 (0%)
Strand = Plus / Plus
Query: 913 gagttccaaccttcaatagagcagctgattcaatttctttctcctaaccgtcaaatcctg 972
|||||||||||||| ||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 8 gagttccaaccttctatacagcagctgattcaatttcttcctagaaaccgtcaaattctg 67
Query: 973 atgtattcagctacatat-cctgttactgtaaaggacttcaaggaaagatatcttcgtaa 1031
|||| |||||| |||| | ||||||||||||||||| ||||| || || | ||||| ||
Sbjct: 68 atgttttcagcaacattttcctgttactgtaaaggatttcaaagataggtttcttcacaa 127
Query: 1032 gccgtatgtcattaaccttatggatgagctaactctgaagggtattacacaattctatgc 1091
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 128 accatatgtcattaaccttatggatgagctaactctgaagggtattacgcaattttatgc 187
Query: 1092 a-tttgtggaagagaggcagaaagtccactgcctaaatactctcttctctaagcttcaaa 1150
|||||||||||||| ||||||||||||||| |||||||| | || |||||||| ||||
Sbjct: 188 ggtttgtggaagagagacagaaagtccactgcttaaatactttattttctaagctgcaaa 247
Query: 1151 taaaccaatcaatcatcttctgcaattcggtgaatcgggttgaactccttgccaagaaaa 1210
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 248 taaaccagtcaatcattttctgcaattcagtgaatcgggttgaactccttgccaagaaaa 307
Query: 1211 tcacagaacttggatattcatgtttctatattcatgc 1247
|||| || ||||| |||||||||||||| || |||||
Sbjct: 308 tcactgagcttgggtattcatgtttctacatacatgc 344
>gnl|LJGI|TC58768 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2
scaffold_105, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_105, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (26%)
Length = 948
Score = 325 bits (164), Expect = 5e-88
Identities = 272/308 (88%)
Strand = Plus / Plus
Query: 322 gagaagactgtacagtctgaatctgccgaccctagttcacaagattggaaggcaagacta 381
|||||||| || ||||||||| ||| ||| | ||||||||||||||||||||||||||
Sbjct: 641 gagaagaccgtgcagtctgaagctgttgactccagttcacaagattggaaggcaagactg 700
Query: 382 aagattccccctccagatacacgctaccagacagaggatgtaacagcaactaaaggaaat 441
|||||||| || | |||||||| || |||| |||||||| ||||||||||||||||||
Sbjct: 701 aagattccacccgctgatacacgatataagaccgaggatgtgacagcaactaaaggaaat 760
Query: 442 gaatttgaggattactttttgaagcgtgagctgctcatgggaatttatgagaagggtttt 501
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 761 gaatttgaggattactttttgaaacgtgagctgctcatggggatttatgagaagggtttt 820
Query: 502 gaaaagccatctcctattcaagaagaaagcattcctattgctcttactggtagtgacatt 561
|| | || ||||| || |||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 821 gagagaccttctcccatccaagaagaaagcataccaattgctcttaccggtagtgacatt 880
Query: 562 cttgctagggcaaaaaatggaacaggcaaaactgctgcgttttgtattcccgcattggaa 621
||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||||||||
Sbjct: 881 cttgctagggctaaaaacggaactggcaaaacagctgcattttgcattccagcattggaa 940
Query: 622 aaaattga 629
||| ||||
Sbjct: 941 aaagttga 948
>gnl|LJGI|FS361529
Length = 525
Score = 303 bits (153), Expect = 2e-81
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 1172 gcaattcggtgaatcgggttgaactccttgccaagaaaatcacagaacttggatattcat 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcaattcggtgaatcgggttgaactccttgccaagaaaatcacagaacttggatattcat 466
Query: 1232 gtttctatattcatgcaaaaatgttacaagaccaccgtaatagagtttttcatgacttcc 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtttctatattcatgcaaaaatgttacaagaccaccgtaatagagtttttcatgacttcc 406
Query: 1292 gcaacggtgcctgcaggaatcttgtttgcactg 1324
|||||||||||||||||||||||||||||||||
Sbjct: 405 gcaacggtgcctgcaggaatcttgtttgcactg 373
>gnl|LJGI|FS327597 similar to UniRef100_Q750L9 Cluster: AGL062Cp; n=1; Eremothecium
gossypii|Rep: AGL062Cp - Ashbya gossypii (Yeast)
(Eremothecium gossypii), partial (4%)
Length = 746
Score = 242 bits (122), Expect = 6e-63
Identities = 171/194 (88%)
Strand = Plus / Plus
Query: 1 atgaacaacaacaatagagcgagatgcccacctcctgggatcgggttaggtcgaggtaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atgaacaacaacaatagagcgagatgcccacctcctgggatcgggttaggtcgaggtaac 464
Query: 61 ggtggcgtcggcggtggtggttttaactcgaaccctgggtttcaaccaaggccacatnnn 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggtggcggcggcggtggtggttttaactcgaaccctgggtttcaaccaaggccacatcaa 524
Query: 121 nnnnnnnnnnnnnnnnntcagtatgtgcagaggcacatgatgccgaatcaacagcagtcc 180
||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 525 caacaacaacaacaacatcagtatgtgcagaggcacatgatgccgaatcaacagcagtac 584
Query: 181 caccagcggcagca 194
||||||| ||||||
Sbjct: 585 caccagcagcagca 598
Score = 149 bits (75), Expect = 6e-35
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 268 tggttgagaaggacccagttgggtggtaatgacaccaacgttgttgaggaagttgagaag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tggttgagaaggacccagttgggtggtaatgacaccaacgttgttgaggaagttgagaag 731
Query: 328 actgtacagtctgaa 342
|||||||||||||||
Sbjct: 732 actgtacagtctgaa 746
>gnl|LJGI|TC75651 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2 scaffold_105,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_105, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 552
Score = 214 bits (108), Expect = 1e-54
Identities = 141/152 (92%)
Strand = Plus / Plus
Query: 1408 cacagggttggtcgttcagggagatatgggcaccttggtttagcagtgaacttgatcacc 1467
||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct: 1 cacagggttggtcgttcagggaggtttggccaccttggtttagcagtgaacttgatcact 60
Query: 1468 tatgaggatcgcttcaatttatataggattgaacaagagctcggcactgaaataaaacaa 1527
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |||
Sbjct: 61 tatgaggatcgctttaatttatataggattgaacaagaacttggcactgaaatcaagcaa 120
Query: 1528 attccgccacacattgaccaggcaatatattg 1559
||||||||||||||||| |||||||| |||||
Sbjct: 121 attccgccacacattgatcaggcaatttattg 152