Miyakogusa Predicted Gene
- Lj1g3v0116470.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v0116470.1 Non Chatacterized Hit- tr|B9FA58|B9FA58_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,41.86,0.00000000004,CDC73,RNA polymerase II accessory factor,
Cdc73; seg,NULL; GB DEF: ARABIDOPSIS THALIANA GENOMIC
DNA,,CUFF.25246.1
(1179 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72318 similar to UniRef100_A7NWQ8 Cluster: Chromosome... 813 0.0
gnl|LJGI|TC79978 similar to UniRef100_A7NWQ8 Cluster: Chromosome... 422 e-117
>gnl|LJGI|TC72318 similar to UniRef100_A7NWQ8 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (54%)
Length = 824
Score = 813 bits (410), Expect = 0.0
Identities = 410/410 (100%)
Strand = Plus / Plus
Query: 388 aacaaacccgacgacaccgaaattgatttcatggcgttgattagggccgctgagaagccg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aacaaacccgacgacaccgaaattgatttcatggcgttgattagggccgctgagaagccg 474
Query: 448 ctcaaggatcgggagtctcttctcgagtgtaagaatcgcgacttctacagcgtcctcgtc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctcaaggatcgggagtctcttctcgagtgtaagaatcgcgacttctacagcgtcctcgtc 534
Query: 508 gccgccaccaagcgcgaggaggagcgccagaggattgagtcgcaccagaggaaggatggc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gccgccaccaagcgcgaggaggagcgccagaggattgagtcgcaccagaggaaggatggc 594
Query: 568 ctcgtcgccaagagtcggttaatgggtggcgacgataggggtggagggtttggggatgat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctcgtcgccaagagtcggttaatgggtggcgacgataggggtggagggtttggggatgat 654
Query: 628 ttggggtatgacccaaaccctaaacctaagatgcatttgaagggttctaagattggggaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttggggtatgacccaaaccctaaacctaagatgcatttgaagggttctaagattggggaa 714
Query: 688 ggggttccgattatcttggtcccaagtgcgtttcagacgctgattactatctacaatgtg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ggggttccgattatcttggtcccaagtgcgtttcagacgctgattactatctacaatgtg 774
Query: 748 aaggagtttttggaggatgggatttatattcccactgatgttaaggttaa 797
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aaggagtttttggaggatgggatttatattcccactgatgttaaggttaa 824
Score = 646 bits (326), Expect = 0.0
Identities = 326/326 (100%)
Strand = Plus / Plus
Query: 1 atggatccactgtcagctctgagagagttcacgatgagaggggagctcgacaagattgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28 atggatccactgtcagctctgagagagttcacgatgagaggggagctcgacaagattgtc 87
Query: 61 aaactcaacggcgagttccgcttcggcgaggagtattccttcccttgctccgtcgagacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 aaactcaacggcgagttccgcttcggcgaggagtattccttcccttgctccgtcgagacg 147
Query: 121 gcgtaccgctcaaccaaaggtaaccgctacaccctcgaaaccctagtccactatgtgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gcgtaccgctcaaccaaaggtaaccgctacaccctcgaaaccctagtccactatgtgaag 207
Query: 181 aaccaccacctcaaacacactgagtatttccagaacaccttcgcactcggcatcccctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aaccaccacctcaaacacactgagtatttccagaacaccttcgcactcggcatcccctcc 267
Query: 241 gtcacactccctgatcggaaacccatcctccactacctccaaggcaccctcgcttccacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtcacactccctgatcggaaacccatcctccactacctccaaggcaccctcgcttccacc 327
Query: 301 gattccatcgagtaccgccctgaaga 326
||||||||||||||||||||||||||
Sbjct: 328 gattccatcgagtaccgccctgaaga 353
>gnl|LJGI|TC79978 similar to UniRef100_A7NWQ8 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (20%)
Length = 445
Score = 422 bits (213), Expect = e-117
Identities = 222/225 (98%)
Strand = Plus / Plus
Query: 955 cagtttaaggaatggcctttcaaggatcatgttgagatttttaataaaattattggattt 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtttaaggaatggcctttcaaggatcatgttgagatttttaataaaattattggattt 60
Query: 1015 ttcatacgttttgaagacgatagtatggagtcagttaagactgtgaagcagtggaatgta 1074
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcatacgttttgaagccgatagtatggagtcagttaagactgtgaagcagtggaatgta 120
Query: 1075 aagattatctcgattagcaaaaacaagcgacaccaggacagggccgcagcattggacgtg 1134
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagattatcttgattagcaaaaacaagcgacaccaggacagggccgcagcattggacgtg 180
Query: 1135 tgggataggctagaagaatttgtacggtcacgatcacattcttga 1179
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 181 tgggataggctagaagaatttgtacggtcccgatcacattcttga 225