Miyakogusa Predicted Gene

Lj0g3v0292639.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0292639.1 CUFF.19573.1
         (255 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC79750 similar to UniRef100_Q10HJ4 Cluster: Expressed ...   196   5e-50

>gnl|LJGI|TC79750 similar to UniRef100_Q10HJ4 Cluster: Expressed protein; n=1; Oryza
           sativa Japonica Group|Rep: Expressed protein - Oryza
           sativa subsp. japonica (Rice), partial (8%)
          Length = 603

 Score =  196 bits (99), Expect = 5e-50
 Identities = 177/203 (87%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaagtattctcatcattcaaggatgtaaaagtcattaagttctcttcagtgctagatgct 63
           |||||||| ||||||||||||||||||||||||||  | ||||||||| ||| |||||||
Sbjct: 64  aaagtattttcatcattcaaggatgtaaaagtcatccaattctcttcaatgcaagatgct 123

                                                                       
Query: 64  ttcacaggtttcgctgacaaggaaagggaagagagattcagaaatcgtgttaagcggtat 123
           ||||| ||||||   ||||||||||| ||||| ||||||||||| ||||||||||  || 
Sbjct: 124 ttcacgggtttcatggacaaggaaagcgaagatagattcagaaaacgtgttaagcattac 183

                                                                       
Query: 124 gtgggcatatggtgctgtgtgccagatcaagatcctggccacatttattatgatatgtac 183
             ||| ||||||||||||||||  |||||  |||||| |||||| |||||||||||||||
Sbjct: 184 acgggtatatggtgctgtgtgctggatcacaatcctgtccacatatattatgatatgtac 243

                                  
Query: 184 tgggatgagaaacctggatggaa 206
           |||||||||||||||| ||||||
Sbjct: 244 tgggatgagaaacctgaatggaa 266