Miyakogusa Predicted Gene
- Lj0g3v0282509.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0282509.1 Non Chatacterized Hit- tr|Q8H6I9|Q8H6I9_MAIZE
Putative oligouridylate binding protein OS=Zea mays
GN,26.96,0.000000000000003,RNA-binding domain, RBD,NULL; no
description,Nucleotide-binding, alpha-beta plait; seg,NULL;
RRM_1,R,CUFF.18812.1
(1251 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63004 similar to UniRef100_A7PDT2 Cluster: Chromosome... 1402 0.0
gnl|LJGI|TC72852 similar to UniRef100_A7P6F6 Cluster: Chromosome... 533 e-151
gnl|LJGI|TC77219 440 e-123
gnl|LJGI|TC71154 homologue to UniRef100_A7P6F6 Cluster: Chromoso... 240 2e-62
gnl|LJGI|TC61981 similar to UniRef100_A7P528 Cluster: Chromosome... 113 3e-24
gnl|LJGI|AW720220 homologue to UniRef100_Q9LNS1 Cluster: F1L3.2;... 96 6e-19
>gnl|LJGI|TC63004 similar to UniRef100_A7PDT2 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (56%)
Length = 798
Score = 1402 bits (707), Expect = 0.0
Identities = 707/707 (100%)
Strand = Plus / Plus
Query: 1 atgcagccagagagattaaggcaacaagctatgatgcagcactctctctaccaccaccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 atgcagccagagagattaaggcaacaagctatgatgcagcactctctctaccaccaccct 151
Query: 61 gctctcctcacaccccctcagatagaacctatcatgagtgggaatctgcctcctggcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gctctcctcacaccccctcagatagaacctatcatgagtgggaatctgcctcctggcttt 211
Query: 121 gattcgagtacatgccgcagtgtctatgtgggcaacattcatccccaggttacagattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gattcgagtacatgccgcagtgtctatgtgggcaacattcatccccaggttacagattcc 271
Query: 181 cttcttcaagagctattcgcaggtgcaggcgctcttgaaggatgcaagcttattcggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cttcttcaagagctattcgcaggtgcaggcgctcttgaaggatgcaagcttattcggaaa 331
Query: 241 gagaagtcatcgtatggctttgtggactactatgatcgaagttcagctgcatttgctatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gagaagtcatcgtatggctttgtggactactatgatcgaagttcagctgcatttgctatt 391
Query: 301 gtaaccctcaatgggaggaatctttttggtcagcctattaaagttaattgggcatatgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtaaccctcaatgggaggaatctttttggtcagcctattaaagttaattgggcatatgct 451
Query: 361 agaagccagagagaggacacctcaggccactttaatatatttgttggtgaccttagtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agaagccagagagaggacacctcaggccactttaatatatttgttggtgaccttagtccc 511
Query: 421 gaggttacagatgcaacattatacgcttgcttctctgcatatcctagttgttcagatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaggttacagatgcaacattatacgcttgcttctctgcatatcctagttgttcagatgca 571
Query: 481 agggtaatgtgggatcagcagacaggtcgatccaggggttttggatttgtctcttttcgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agggtaatgtgggatcagcagacaggtcgatccaggggttttggatttgtctcttttcgg 631
Query: 541 aatcagcaggatgcccaaagtgctattaatgatctcactgggaagtggcttggaagtaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aatcagcaggatgcccaaagtgctattaatgatctcactgggaagtggcttggaagtaga 691
Query: 601 caaattcgttgtaattgggcctcaaaaggggctaatgccaatgatgaaaagcagagctca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 caaattcgttgtaattgggcctcaaaaggggctaatgccaatgatgaaaagcagagctca 751
Query: 661 gattccaaaaatgttgtggagttaactaatggaacatctggaagcca 707
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gattccaaaaatgttgtggagttaactaatggaacatctggaagcca 798
>gnl|LJGI|TC72852 similar to UniRef100_A7P6F6 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (6%)
Length = 548
Score = 533 bits (269), Expect = e-151
Identities = 278/281 (98%)
Strand = Plus / Plus
Query: 971 gcaaacccactcctccaggagcagcctcttctcctcttccccttccgccaccgtcttctg 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gcaaacccactcctccaggagcagcctcttctcctcttccccttccgccaccgtcttttg 60
Query: 1031 cccctgtgcctgctggattttcacttgctagtcttgcagcttatgaacgccagatggcat 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccctgtgcctgctggattttcacttgctagtcttgcagcttatgaacgccagatggcat 120
Query: 1091 taagcagaatgaatggtgcacatgctgcccttcttcaacagcagggttatcaaaatgccg 1150
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 121 taagcagaatgaatggtgcacatgctgcccttcttcatcagcagggttatctaaatgccg 180
Query: 1151 cgaagcaggcagccatgggaatgggtgctctcggggctgctgcttacgatactggattcc 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgaagcaggcagccatgggaatgggtgctctcggggctgctgcttacgatactggattcc 240
Query: 1211 agggtgttgggaccacccagcatcttatgtactatccttaa 1251
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agggtgttgggaccacccagcatcttatgtactatccttaa 281
>gnl|LJGI|TC77219
Length = 555
Score = 440 bits (222), Expect = e-123
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 1030 gcccctgtgcctgctggattttcacttgctagtcttgcagcttatgaacgccagatggca 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcccctgtgcctgctggattttcacttgctagtcttgcagcttatgaacgccagatggca 60
Query: 1090 ttaagcagaatgaatggtgcacatgctgcccttcttcaacagcagggttatcaaaatgcc 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaagcagaatgaatggtgcacatgctgcccttcttcaacagcagggttatcaaaatgcc 120
Query: 1150 gcgaagcaggcagccatgggaatgggtgctctcggggctgctgcttacgatactggattc 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcgaagcaggcagccatgggaatgggtgctctcggggctgctgcttacgatactggattc 180
Query: 1210 cagggtgttgggaccacccagcatcttatgtactatccttaa 1251
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cagggtgttgggaccacccagcatcttatgtactatccttaa 222
>gnl|LJGI|TC71154 homologue to UniRef100_A7P6F6 Cluster: Chromosome chr9 scaffold_7,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr9 scaffold_7, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (97%)
Length = 1803
Score = 240 bits (121), Expect = 2e-62
Identities = 513/641 (80%), Gaps = 2/641 (0%)
Strand = Plus / Plus
Query: 53 accaccctgctctcctcacaccccctcagatagaacctatcatgagtgggaatctgcctc 112
||||||||| |||||| | || |||||||| ||||| ||| ||||| ||||||||||
Sbjct: 197 accaccctggtctccttgctcctcctcagattgaaccaatcccaagtggaaatctgcctc 256
Query: 113 ctggctttgattcgagtacatgccgcagtgtctatgtgggcaacattcatccccaggtta 172
|||| |||||| | ||||| ||||||||||| |||||||| ||||| || | ||||| |
Sbjct: 257 ctggttttgatccaagtacttgccgcagtgtgtatgtggggaacatccacacacaggtaa 316
Query: 173 cagattcccttcttcaagagctattcgcaggtgcaggcgctcttgaaggatgcaagctta 232
| || ||| | ||||| | || |||||| ||||| || ||||||| || || |||
Sbjct: 317 ctgagctgcttttgcaagaagtttttgcaggtacaggccctgttgaaggttgtaaactt- 375
Query: 233 ttcggaaag-agaagtcatcgtatggctttgtggactactatgatcgaagttcagctgca 291
||| ||||| |||||||||| ||||| || | | |||| ||||| || || |||||
Sbjct: 376 ttcagaaaggagaagtcatcctatggattcattcattacttcgatcgtagatctgctgct 435
Query: 292 tttgctattgtaaccctcaatgggaggaatctttttggtcagcctattaaagttaattgg 351
|||| || |||| |||||||||||| |||| ||||| ||||| || |||||||| |||
Sbjct: 436 cttgccatattaactctcaatgggaggcatctatttgggcagcccatcaaagttaactgg 495
Query: 352 gcatatgctagaagccagagagaggacacctcaggccactttaatatatttgttggtgac 411
||||||||||| | |||||||| || || ||||| |||| || ||||||||||||||
Sbjct: 496 gcatatgctagtggtcagagagaagatacatcaggacactacaacatatttgttggtgat 555
Query: 412 cttagtcccgaggttacagatgcaacattatacgcttgcttctctgcatatcctagttgt 471
|||||||| |||||||| ||||| || | | || ||||| |||| || || ||||||
Sbjct: 556 cttagtcctgaggttactgatgctacgctgtttgcatgcttttctgtctaccccagttgt 615
Query: 472 tcagatgcaagggtaatgtgggatcagcagacaggtcgatccaggggttttggatttgtc 531
|| ||||||||||| |||||||||||| |||| || || || ||||| |||||||||||
Sbjct: 616 tctgatgcaagggttatgtgggatcagaagactgggcgttcgaggggatttggatttgtt 675
Query: 532 tcttttcggaatcagcaggatgcccaaagtgctattaatgatctcactgggaagtggctt 591
|| ||||| | ||| ||||| || |||||||||||||||||| | ||||| |||||||||
Sbjct: 676 tcatttcgtagtcaacaggacgcacaaagtgctattaatgatttgactggaaagtggctt 735
Query: 592 ggaagtagacaaattcgttgtaattgggcctcaaaaggggctaatgccaatgatgaaaag 651
|||||||||||||| || || |||||||| ||||||| ||| || |||||| ||||||
Sbjct: 736 ggaagtagacaaatacgctgcaattgggcaacaaaaggtgctggtggcaatgaagaaaag 795
Query: 652 cagagctcagattccaaaaatgttgtggagttaactaatgg 692
|| | |||||| |||||| ||| || || ||||||||||
Sbjct: 796 caaaactcagacaccaaaagtgtggtagaactaactaatgg 836
>gnl|LJGI|TC61981 similar to UniRef100_A7P528 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (97%)
Length = 1932
Score = 113 bits (57), Expect = 3e-24
Identities = 108/125 (86%)
Strand = Plus / Plus
Query: 373 gaggacacctcaggccactttaatatatttgttggtgaccttagtcccgaggttacagat 432
||||| |||||||| ||||| ||| ||||||||||||| | ||||| |||||||| |||
Sbjct: 571 gaggatacctcaggtcacttcaatgtatttgttggtgatttgagtccagaggttactgat 630
Query: 433 gcaacattatacgcttgcttctctgcatatcctagttgttcagatgcaagggtaatgtgg 492
||||| |||| ||||||||||| | |||||||||||||| ||||||||||| ||||||
Sbjct: 631 gcaactttatttgcttgcttctcagtctatcctagttgttctgatgcaagggttatgtgg 690
Query: 493 gatca 497
|||||
Sbjct: 691 gatca 695
>gnl|LJGI|AW720220 homologue to UniRef100_Q9LNS1 Cluster: F1L3.2; n=1; Arabidopsis
thaliana|Rep: F1L3.2 - Arabidopsis thaliana (Mouse-ear
cress), partial (23%)
Length = 535
Score = 95.6 bits (48), Expect = 6e-19
Identities = 317/402 (78%), Gaps = 6/402 (1%)
Strand = Plus / Plus
Query: 25 caagctatgatgcagcactctctctaccaccaccctgctctcctcacaccccctcagata 84
|||||| | |||||||| ||||||||||||| ||| |||||| | || ||||||||
Sbjct: 138 caagctcttatgcagcaatctctctaccacc---ctggtctccttgctcctcctcagatt 194
Query: 85 gaacctatcatgagtgggaatctgcctcctggctttgattcgagtacatgccgcagtgtc 144
||||| ||| ||||| |||||||||||||| |||||| | ||||| |||||||||||
Sbjct: 195 gaaccaatcccaagtggaaatctgcctcctggttttgatccaagtacttgccgcagtgtg 254
Query: 145 tatgtgggcaacattcatccccaggttacagattcccttcttcaagagctattcgcaggt 204
|||||||| ||||| || | ||||| || || ||| | ||||| | || ||||||
Sbjct: 255 tatgtggggaacatccacacacaggtaactgagctgcttttgcaagaagtttttgcaggt 314
Query: 205 gcaggcgctcttgaaggatgcaagcttattcggaaa-gagaagtcatcgtatggctttgt 263
||||| || ||||||| || || ||| ||| |||| ||||||||||| ||||| || |
Sbjct: 315 acaggccctgttgaaggttgtaaactt-ttcagaaaggagaagtcatcctatggattcat 373
Query: 264 ggactactatgatcgaagttcagctgcatttgctattgtaaccctcaatgggaggaatct 323
| |||| ||||| || || ||||| |||| || |||| |||||||||||| ||||
Sbjct: 374 tcattacttcgatcgtagatctgctgctcttgccatattaactctcaatgggaggcatct 433
Query: 324 ttttggtcagcctattaaagttaattgggcatatgctagaagccagagagaggacacctc 383
||||| ||||| || |||||||| |||||||||||||| | |||||||| || || ||
Sbjct: 434 atttgggcagcccatcaaagttaactgggcatatgctagtggtcagagagaagatacatc 493
Query: 384 aggccactttaatatatttgtt-ggtgaccttagtcccgagg 424
||| |||| || ||||||||| ||||| |||||||| ||||
Sbjct: 494 aggacactacaacatatttgttgggtgatcttagtcctgagg 535