Miyakogusa Predicted Gene
- Lj0g3v0279619.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0279619.1 Non Chatacterized Hit- tr|B9RET3|B9RET3_RICCO
5'->3' exoribonuclease, putative OS=Ricinus communis G,46.51,2e-16,
,CUFF.18604.1
(382 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77659 511 e-145
gnl|LJGI|TC63767 weakly similar to UniRef100_Q65Q11 Cluster: Pse... 88 5e-17
>gnl|LJGI|TC77659
Length = 954
Score = 511 bits (258), Expect = e-145
Identities = 261/262 (99%)
Strand = Plus / Plus
Query: 121 gctttaacaatggaagaaggagtgagacctaggtcatcgaggcttccaaattctggacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctttaacaatggaagaaggagtgagacctaggtcatcgaggcttccaaattctggacca 60
Query: 181 atcaatttagaaccccgatttgtgcagaacatgggtcgtccagtaccacctccaaagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaatttagaaccccgatttgtgcagaacatgggtcgtccagtaccacctccaaagtgg 120
Query: 241 attactaaagcaccgcctgcgaatgaaatgtacagtaggcatcaagaagctgcatcgggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attactaaagcaccgcctgcgaatgaaatgtacagtaggcatcaagaagctgcatcgggg 180
Query: 301 gcagtaccttatgataagcagacaaaggtttaccaagttaaaaaacaggagccccaagat 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 181 gcagtaccttatgataagcagacaaaggcttaccaagttaaaaaacaggagccccaagat 240
Query: 361 actcctgattgtgggaattgat 382
||||||||||||||||||||||
Sbjct: 241 actcctgattgtgggaattgat 262
>gnl|LJGI|TC63767 weakly similar to UniRef100_Q65Q11 Cluster: Pseudouridine synthase;
n=1; Mannheimia succiniciproducens MBEL55E|Rep:
Pseudouridine synthase - Mannheimia succiniciproducens
(strain MBEL55E), partial (8%)
Length = 916
Score = 87.7 bits (44), Expect = 5e-17
Identities = 121/146 (82%), Gaps = 3/146 (2%)
Strand = Plus / Plus
Query: 198 atttgtgcagaacatgggtcgtccagtaccacctccaaagtggattactaaagcaccgcc 257
|||||||||||||| ||||| ||| ||||||||||||| ||||| |||| ||| |||
Sbjct: 219 atttgtgcagaacacgggtcctccgataccacctccaaattggatcactagagccccgga 278
Query: 258 tgcgaatgaaatgtacagtaggcatcaagaagctgcatcgggggcagtaccttatgataa 317
| |||||| ||| ||| || | ||||||||||||||| |||||||| ||||||||||
Sbjct: 279 tacgaatggaatataccctacgtatcaagaagctgcattgggggcag---cttatgataa 335
Query: 318 gcagacaaaggtttaccaagttaaaa 343
||| | ||||| |||||||||||||
Sbjct: 336 gcacgcgaaggtgtaccaagttaaaa 361
Score = 81.8 bits (41), Expect = 3e-15
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 30 taatggtggacagaacgacagacacaattttaggacacaatttaggtcacagcatcaaga 89
||||||||| || || |||||||| |||||||||| |||| ||||||||| | || ||
Sbjct: 15 taatggtgggcaaaatgacagacagaattttaggatacaagaaaggtcacagtaccatga 74
Query: 90 acagtcttacaatgtgaaggctgggttttctgctttaacaatggaagaaggagtgagacc 149
||||| |||| |||| |||||||||||||||| || ||| | ||||||||||||||
Sbjct: 75 acagttccacaacatgaaaactgggttttctgctttgactatgaatgaaggagtgagacc 134
Query: 150 taggtcatc 158
|||||||||
Sbjct: 135 taggtcatc 143