Miyakogusa Predicted Gene

Lj0g3v0258499.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0258499.1 Non Chatacterized Hit- tr|E1ZQD8|E1ZQD8_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,26.4,2e-18,TPR-like,NULL; PPR_2,Pentatricopeptide repeat;
PPR,Pentatricopeptide repeat; PPR_3,Pentatricopeptide,CUFF.17001.1
         (2091 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV779144 weakly similar to UniRef100_A7PN27 Cluster: Ch...   383   e-105
gnl|LJGI|DC598129                                                     250   3e-65

>gnl|LJGI|AV779144 weakly similar to UniRef100_A7PN27 Cluster: Chromosome chr14
            scaffold_21, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr14 scaffold_21, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (7%)
          Length = 544

 Score =  383 bits (193), Expect = e-105
 Identities = 205/209 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1883 tgtttacttatctgtccttaataagatgctgtatttacggagaactctgggaacaattag 1942
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 544  tgtttacttatctgtccttaataagatgctgtatttacggagaactctgggtacgattag 485

                                                                        
Query: 1943 aagaaatcctaacgcacactacgccaaacgccactctttataatgctgctgttcaaggga 2002
            |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 484  aagaaatcctaacgcacactacgccctacgccactctttataatgctgctgttcaaggga 425

                                                                        
Query: 2003 tgtgcttacgtggcaagattaactttgcaaataaggtctacgaaaaaatgctggagagtg 2062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424  tgtgcttacgtggcaagattaactttgcaaataaggtctacgaaaaaatgctggagagtg 365

                                         
Query: 2063 gtcttcaaccggatgccaaaacacgagtg 2091
            |||||||||||||||||||||||||||||
Sbjct: 364  gtcttcaaccggatgccaaaacacgagtg 336


>gnl|LJGI|DC598129 
          Length = 334

 Score =  250 bits (126), Expect = 3e-65
 Identities = 132/134 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccctttatgttgaattttccatttcagtttcataaacctgtttcttgtgtttacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgccctttatgttgaattttccatttcagtttcataaacctgtttcttgtgtttacaag 260

                                                                       
Query: 61  gttggttacttcccctttgttactcatacaagtgtttgtgtaagcacacatagtaactat 120
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gttggttacttgccctttgttactcatacaagtgtttgtgtgagcacacatagtaactat 320

                         
Query: 121 gttaacattgtttt 134
           ||||||||||||||
Sbjct: 321 gttaacattgtttt 334