Miyakogusa Predicted Gene

Lj0g3v0240129.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0240129.1 tr|G7JDC6|G7JDC6_MEDTR TMV resistance protein N
OS=Medicago truncatula GN=MTR_4g023400 PE=4 SV=1,60,0.00004,
,NODE_81081_length_230_cov_21.200001.path4.1
         (127 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC594433 weakly similar to UniRef100_A2Q6G3 Cluster: TI...   224   9e-59
gnl|LJGI|TC73352                                                      107   2e-23
gnl|LJGI|BP073543                                                      84   2e-16

>gnl|LJGI|DC594433 weakly similar to UniRef100_A2Q6G3 Cluster: TIR; AAA ATPase; n=1;
           Medicago truncatula|Rep: TIR; AAA ATPase - Medicago
           truncatula (Barrel medic), partial (11%)
          Length = 581

 Score =  224 bits (113), Expect = 9e-59
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtggttgtttttgagaacggattcactgtgaagaagacaacagtttatcttgtatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atggtggttgtttttgagaacggattcactgtgaagaagacaacagtttatcttgtatat 528

                                                                
Query: 61  gatgaagagaaaatggaaccttgcaatgcaccatataagaatgaaattgtttt 113
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gatgaagagaaaatggaaccttgcaatgcaccatataagaatgaaattgtttt 581


>gnl|LJGI|TC73352 
          Length = 672

 Score =  107 bits (54), Expect = 2e-23
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 74  tggaaccttgcaatgcaccatataagaatgaaattgtttttggtggtgatgaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24  tggaaccttgcaatgcaccatataagaatgaaattgtttttggtggtgatgaaa 77


>gnl|LJGI|BP073543 
          Length = 395

 Score = 83.8 bits (42), Expect = 2e-16
 Identities = 95/114 (83%), Gaps = 9/114 (7%)
 Strand = Plus / Minus

                                                                       
Query: 23  gattcactgtgaagaagacaacagtttatcttgtatatgatgaa---------gagaaaa 73
           ||||||||||||||||||||||| |||||||| |||||| ||||         |||||||
Sbjct: 393 gattcactgtgaagaagacaacaatttatcttatatatgttgaaccaattgaggagaaaa 334

                                                                 
Query: 74  tggaaccttgcaatgcaccatataagaatgaaattgtttttggtggtgatgaaa 127
           |||||  |||||||||||||| ||||||||| ||||||| | ||||| ||||||
Sbjct: 333 tggaatattgcaatgcaccatgtaagaatgagattgtttctagtggtaatgaaa 280