Miyakogusa Predicted Gene
- Lj0g3v0133179.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0133179.1 Non Chatacterized Hit- tr|C5X9N0|C5X9N0_SORBI
Putative uncharacterized protein Sb02g003340
OS=Sorghu,33.74,4e-19,RING/U-box,NULL; ZF_RING_2,Zinc finger,
RING-type; Ring finger,Zinc finger, RING-type;
zf-RING_2,Zin,CUFF.8128.1
(543 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP055954 similar to UniRef100_Q2HV66 Cluster: Zinc fing... 728 0.0
gnl|LJGI|TC81852 homologue to UniRef100_Q2HV66 Cluster: Zinc fin... 109 2e-23
gnl|LJGI|AV427591 similar to UniRef100_Q2HV66 Cluster: Zinc fing... 58 6e-08
>gnl|LJGI|BP055954 similar to UniRef100_Q2HV66 Cluster: Zinc finger, RING-type; n=1;
Medicago truncatula|Rep: Zinc finger, RING-type -
Medicago truncatula (Barrel medic), partial (64%)
Length = 518
Score = 728 bits (367), Expect = 0.0
Identities = 373/375 (99%)
Strand = Plus / Plus
Query: 169 cgccacaaccgccgccgcgcccccgacggcgttgttctgccgcgcatcatcttcgtcgcc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cgccacaaccgccgccgcgcccccgacggcgttgttctgccgcgcatcatcttcgtcgcc 186
Query: 229 gaggagggcgccgaggaggaggggccgcgcgtgtcgggtctggacccgaacgtgatcaac 288
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaggacggcgacgaggaggaggggccgcgcgtgtcgggtctggacccgaacgtgatcaac 246
Query: 289 tcgtacccgaggttccagtacgcggcggcggaacgcggccacggcgaaaccacgtgctcg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcgtacccgaggttccagtacgcggcggcggaacgcggccacggcgaaaccacgtgctcg 306
Query: 349 atctgcctctgcgagtttaaggaagcggagatgctgaggatgatgccggagtgccgccac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atctgcctctgcgagtttaaggaagcggagatgctgaggatgatgccggagtgccgccac 366
Query: 409 cattttcacctctgttgccttgactcgtggctgaagcttaatgggtcttgccctgtttgc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cattttcacctctgttgccttgactcgtggctgaagcttaatgggtcttgccctgtttgc 426
Query: 469 cggaactcgccgatgccgacgccgttgtcgacgccgctgcaggaagtggtgccgctctct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cggaactcgccgatgccgacgccgttgtcgacgccgctgcaggaagtggtgccgctctct 486
Query: 529 cagtacgcccgctga 543
|||||||||||||||
Sbjct: 487 cagtacgcccgctga 501
Score = 95.6 bits (48), Expect = 3e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 57 ttccccttacctcaccaacctcggcttcggctactcaatcgccatcgc 104
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 ttccccttacctcaccaacctcggcttcggctactcaatcgccatcgc 62
>gnl|LJGI|TC81852 homologue to UniRef100_Q2HV66 Cluster: Zinc finger, RING-type; n=1;
Medicago truncatula|Rep: Zinc finger, RING-type -
Medicago truncatula (Barrel medic), partial (38%)
Length = 413
Score = 109 bits (55), Expect = 2e-23
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 374 cggagatgctgaggatgatgccggagtgccgccaccattttcacctctgttgccttgact 433
|||||||||||||||||||||||||||| || | | | || |||||||| ||||| || |
Sbjct: 21 cggagatgctgaggatgatgccggagtgtcgaccctacttccacctctgctgcctcgatt 80
Query: 434 cgtggctgaagcttaatgggtcttgccctgtttgccggaactcgccgatgccgacgccg 492
| ||||| |||||||| ||||| ||||||||||| |||||||||||| | |||||||||
Sbjct: 81 catggctcaagcttaaagggtcgtgccctgtttgtcggaactcgccgctcccgacgccg 139
>gnl|LJGI|AV427591 similar to UniRef100_Q2HV66 Cluster: Zinc finger, RING-type; n=1;
Medicago truncatula|Rep: Zinc finger, RING-type -
Medicago truncatula (Barrel medic), partial (23%)
Length = 337
Score = 58.0 bits (29), Expect = 6e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 264 gggtctggacccgaacgtgatcaactcgtacccgagg 300
||||||||||| ||||||||| |||||||||||||||
Sbjct: 301 gggtctggaccagaacgtgataaactcgtacccgagg 337