Miyakogusa Predicted Gene
- Lj0g3v0128219.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0128219.1 tr|B9HNX6|B9HNX6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650065 PE=4
SV=1,56.19,2e-19,seg,NULL; PST2_GOSHI_P31336;,NULL,CUFF.7719.1
(324 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70238 similar to UniRef100_P31336 Cluster: Photosyste... 634 0.0
gnl|LJGI|TC72937 similar to UniRef100_P31336 Cluster: Photosyste... 115 2e-25
>gnl|LJGI|TC70238 similar to UniRef100_P31336 Cluster: Photosystem II 5 kDa protein,
chloroplast precursor; n=1; Gossypium hirsutum|Rep:
Photosystem II 5 kDa protein, chloroplast precursor -
Gossypium hirsutum (Upland cotton) (Gossypium
mexicanum), partial (50%)
Length = 551
Score = 634 bits (320), Expect = 0.0
Identities = 323/324 (99%)
Strand = Plus / Plus
Query: 1 atggcatcattcaccatgacagcctcaatccttggctccccagtccttaccaaccggtct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 65 atggcatcattcaccatgacagcctcaatccttggctccccagtccttaccagccggtct 124
Query: 61 gcagttgcaacacagaggagattcgttgtcaatgctgctgctaccagagcagttgaaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gcagttgcaacacagaggagattcgttgtcaatgctgctgctaccagagcagttgaaggg 184
Query: 121 gacaacaaggtgaatgaagagggtagcaacaatggaaggaggaacttgatgtttgtttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gacaacaaggtgaatgaagagggtagcaacaatggaaggaggaacttgatgtttgtttct 244
Query: 181 gcagctgctgctgtttgctctgttgctgggattgcactggcagatgaacctaaaaatggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcagctgctgctgtttgctctgttgctgggattgcactggcagatgaacctaaaaatggg 304
Query: 241 tccccagaagctaagaaaaagtatgctcctgtttgtgtcaccatgcctactgctagggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tccccagaagctaagaaaaagtatgctcctgtttgtgtcaccatgcctactgctagggtg 364
Query: 301 tgccgcaaagggcctccaacttaa 324
||||||||||||||||||||||||
Sbjct: 365 tgccgcaaagggcctccaacttaa 388
>gnl|LJGI|TC72937 similar to UniRef100_P31336 Cluster: Photosystem II 5 kDa protein,
chloroplast precursor; n=1; Gossypium hirsutum|Rep:
Photosystem II 5 kDa protein, chloroplast precursor -
Gossypium hirsutum (Upland cotton) (Gossypium
mexicanum), partial (49%)
Length = 481
Score = 115 bits (58), Expect = 2e-25
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 154 ggaaggaggaacttgatgtttgtttctgcagctgctgctgtttgctctgttgctgggatt 213
|||||||||||| | ||||||| | ||||||| || |||||||||||||||||||||||
Sbjct: 213 ggaaggaggaacatcatgtttgctgctgcagcagcagctgtttgctctgttgctgggatg 272
Query: 214 gcactggcagatgaacctaaaaatgggtccccagaagctaagaaaaagtatgctcctgtt 273
|| |||| ||||| || ||| ||| |||||||||||||||||| ||||||||||||
Sbjct: 273 gctgtggctgatgagcccaaacgtggctccccagaagctaagaaagcctatgctcctgtt 332
Query: 274 tgtgtcacca 283
||||||||||
Sbjct: 333 tgtgtcacca 342