Miyakogusa Predicted Gene
- Lj0g3v0110929.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0110929.1 Non Chatacterized Hit- tr|I1ND38|I1ND38_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,30.58,0.000000000000001,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PPR,Pentatricopeptide
repeat,CUFF.6407.1
(769 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82170 weakly similar to UniRef100_A7P9F5 Cluster: Chr... 408 e-113
gnl|LJGI|TC60576 similar to UniRef100_A7P9F5 Cluster: Chromosome... 385 e-106
gnl|LJGI|TC68987 similar to UniRef100_Q6ILL4 Cluster: HDC09080; ... 347 6e-95
gnl|LJGI|DC593356 weakly similar to UniRef100_A7P9F5 Cluster: Ch... 258 5e-68
gnl|LJGI|TC62621 200 9e-51
gnl|LJGI|FS356651 186 1e-46
gnl|LJGI|FS354708 weakly similar to UniRef100_Q9FIX3 Cluster: Gb... 127 1e-28
gnl|LJGI|TC81881 similar to UniRef100_A6FHB6 Cluster: Spr protei... 113 2e-24
gnl|LJGI|AV776874 weakly similar to UniRef100_Q7X9F7 Cluster: Le... 101 6e-21
gnl|LJGI|FS338098 weakly similar to UniRef100_A7Q333 Cluster: Ch... 56 3e-07
>gnl|LJGI|TC82170 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 832
Score = 408 bits (206), Expect = e-113
Identities = 418/489 (85%), Gaps = 6/489 (1%)
Strand = Plus / Plus
Query: 273 tgatactctgatagagaactgcagtaataatgaatttatgagtttggtagagcttgtcaa 332
|||| ||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct: 147 tgattctctgatagagaactgcagtaataatgaatttaagagtgtggtagggcttgtcaa 206
Query: 333 aggtttccggattagggatttagagaacgaagcagccagtgttttaaacacaatgcttca 392
||||||| | || |||| ||||| ||| ||||| ||||| | | ||||||| || |
Sbjct: 207 aggtttcggaatgaggggtttagtgaatgaagccgccagagctcgtgtcacaatgtttga 266
Query: 393 ggggaattataagccagatggagcagtttataatttcttaattgttgaacattgtagatg 452
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||
Sbjct: 267 ggggaattataagccagatggagccgtttataatttattaatatttgaacattctagatg 326
Query: 453 taaaaatgttgataaggcatatgatatgtacatggagatggtgcagtgtggttttgcacc 512
| |||||| ||||||| |||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 327 tcgtaatgttcataaggcgtatgatatgtacatggagatggtgcattatggttttgctcc 386
Query: 513 tcatatgttctccgtacttgctcttattaagactctatattatggtagaaggtacaatga 572
|||||||||||| |||| |||||||||| | |||||||| ||||| ||||||||||| |
Sbjct: 387 tcatatgttctctgtacgtgctcttatttgggctctatatcatggtggaaggtacaataa 446
Query: 573 gatgagttgggtaattgaaaacacattgaggagctgtaatctcaatgattctgagctaca 632
||||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 447 gatgatttgggtaaatcaaaacacattgaggagctgtaatctcaatgattccgagctact 506
Query: 633 taaactacttaatgaaattggcgtcaggaaaggtgaatttaaagaagatgctcttttcaa 692
|||| ||||||||||||||| ||||| | |||||||| | | ||||||
Sbjct: 507 taaagtacttaatgaaattgacgtcaaggaaggtgaaact------ggggctcttgaggt 560
Query: 693 tgtccttgctgaaatagccatggatggcctgttacttaatggaggaaagtgttcatatgc 752
||| || |||||||||||||||||||| ||||||||| |||| |||||||||||||||||
Sbjct: 561 tgtgctagctgaaatagccatggatgggctgttacttgatggtggaaagtgttcatatgc 620
Query: 753 tccagcaag 761
| |||||||
Sbjct: 621 ttcagcaag 629
>gnl|LJGI|TC60576 similar to UniRef100_A7P9F5 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 914
Score = 385 bits (194), Expect = e-106
Identities = 418/493 (84%), Gaps = 6/493 (1%)
Strand = Plus / Plus
Query: 266 taacatttgatactctgatagagaactgcagtaataatgaatttatgagtttggtagagc 325
|||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |
Sbjct: 27 taacatatgatactctgatagagaactgcagtaataatgaattcaagagtgtggtaggac 86
Query: 326 ttgtcaaaggtttccggattagggatttagagaacgaagcagccagtgttttaaacacaa 385
|||||||||||||| | |||| |||| |||| ||||||||||| | | ||||||
Sbjct: 87 ttgtcaaaggtttcatcaagaggggtttacagaatgaagcagccagagctcatgacacaa 146
Query: 386 tgcttcaggggaattataagccagatggagcagtttataatttcttaattgttgaacatt 445
||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct: 147 tgcttcacgggaattataagccagatggagcagtttataatttgttaatatttagtcatt 206
Query: 446 gtagatgtaaaaatgttgataaggcatatgatatgtacatggagatggtgcagtgtggtt 505
|||| | |||||||||||||||||| ||||||||| |||||||||||| | |||||
Sbjct: 207 ctagaagccttaatgttgataaggcatataatatgtacaaggagatggtgcattatggtt 266
Query: 506 ttgcacctcatatgttctccgtacttgctcttattaagactctatattatggtagaaggt 565
||| |||||||||||||| || |||||||||||||| |||||||| ||| ||||||||
Sbjct: 267 ttgatcctcatatgttctctgtgcttgctcttattaaagctctatatcatgttagaaggt 326
Query: 566 acaatgagatgagttgggtaattgaaaacacattgaggagctgtaatctcaatgattctg 625
|| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 327 acgatgagacgcgttgggtaattcaaaacacattgaggagctgtaatctcaatgattctg 386
Query: 626 agctacataaactacttaatgaaattggcgtcaggaaaggtgaatttaaagaagatgctc 685
|||||| |||| ||||| ||||||||| ||||||| ||||| || ||||||
Sbjct: 387 agctacctaaagtacttgatgaaattgatgtcagga------aatttcaaattcatgctc 440
Query: 686 ttttcaatgtccttgctgaaatagccatggatggcctgttacttaatggaggaaagtgtt 745
|| | ||| || |||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct: 441 ttctgtctgtgctagctgaaatagccgtggatggcctgttacttgatggtggaaagtgtt 500
Query: 746 catatgctccagc 758
|||||||| ||||
Sbjct: 501 catatgcttcagc 513
>gnl|LJGI|TC68987 similar to UniRef100_Q6ILL4 Cluster: HDC09080; n=1; Drosophila
melanogaster|Rep: HDC09080 - Drosophila melanogaster
(Fruit fly), partial (10%)
Length = 813
Score = 347 bits (175), Expect = 6e-95
Identities = 390/462 (84%), Gaps = 6/462 (1%)
Strand = Plus / Plus
Query: 273 tgatactctgatagagaactgcagtaataatgaatttatgagtttggtagagcttgtcaa 332
||||| ||||||||||||||||||||||||||| |||| |||| |||||| |||| ||||
Sbjct: 13 tgatattctgatagagaactgcagtaataatgattttaggagtgtggtagggcttatcaa 72
Query: 333 aggtttccggattagggatttagagaacgaagcagccagtgttttaaacacaatgcttca 392
|||||||| | |||||||||| | | ||||||||||| | | ||||||||||| |
Sbjct: 73 aggtttcctcacgagggatttagtgtatgaagcagccagagctcatgacacaatgcttga 132
Query: 393 ggggaattataagccagatggagcagtttataatttcttaattgttgaacattgtagatg 452
|||||||||||||| ||| || |||||||||||| | ||||| ||| ||||||||||
Sbjct: 133 ggggaattataagctagagggggcagtttataatgtattaatatatgatcattgtagatc 192
Query: 453 taaaaatgttgataaggcatatgatatgtacatggagatggtgcagtgtggttttgcacc 512
| |||||| |||||| ||||||||||||| |||||||||||| | ||||||||| |
Sbjct: 193 tggtaatgtttgtaaggcgtatgatatgtacaaggagatggtgcattatggttttgcttc 252
Query: 513 tcatatgttctccgtacttgctcttattaagactctatattatggtagaaggtacaatga 572
|||||||||||| |||||||||||||||||| |||||||||||| | |||| ||| ||||
Sbjct: 253 tcatatgttctctgtacttgctcttattaaggctctatattatgatggaagttaccatga 312
Query: 573 gatgagttgggtaattgaaaacacattgaggagctgtaatctcaatgattctgagctaca 632
|||||||||||| ||| |||| || |||||||||||||||||||||||||||||||||
Sbjct: 313 gatgagttgggtgattcaaaatactttgaggagctgtaatctcaatgattctgagctaat 372
Query: 633 taaactacttaatgaaattggcgtcaggaaaggtgaatttaaagaagatgctcttttcaa 692
| || ||||||||||||||| ||| |||||| ||||| || ||||||||||| |
Sbjct: 373 tgaagtacttaatgaaattgacgtgaggaaacgtgaaatt------gatgctcttttgga 426
Query: 693 tgtccttgctgaaatagccatggatggcctgttacttaatgg 734
||| || |||||| ||||||| ||||||||||||||| ||||
Sbjct: 427 tgtactagctgaagtagccatagatggcctgttacttgatgg 468
>gnl|LJGI|DC593356 weakly similar to UniRef100_A7P9F5 Cluster: Chromosome chr3
scaffold_8, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr3 scaffold_8, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 591
Score = 258 bits (130), Expect = 5e-68
Identities = 255/297 (85%), Gaps = 6/297 (2%)
Strand = Plus / Plus
Query: 465 taaggcatatgatatgtacatggagatggtgcagtgtggttttgcacctcatatgttctc 524
|||||| ||| |||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 6 taaggcctataatatgtacatggagatggtgcattatggttttgttcctcatatgttctc 65
Query: 525 cgtacttgctcttattaagactctatattatggtagaaggtacaatgagatgagttgggt 584
| |||||||||||||||| ||||| ||||| | ||||| | |||||||||||||||||
Sbjct: 66 tgcacttgctcttattaaggctctacattattgcggaaggcagaatgagatgagttgggt 125
Query: 585 aattgaaaacacattgaggagctgtaatctcaatgattctgagctacataaactacttaa 644
|||| ||||||||||||||||||||||||||||||| | |||||||| |||| |||||||
Sbjct: 126 aattcaaaacacattgaggagctgtaatctcaatgagtttgagctacctaaagtacttaa 185
Query: 645 tgaaattggcgtcaggaaaggtgaatttaaagaagatgctcttttcaatgtccttgctga 704
|||||||| | || |||| || || ||| |||||||||| |||| || |||||
Sbjct: 186 tgaaattgacttcccgaaatgtaaaatta------atgctcttttggatgtactagctga 239
Query: 705 aatagccatggatggcctgttacttaatggaggaaagtgttcatatgctccagcaag 761
||| ||||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct: 240 aattgccatggatggcctgttacttgatggtggaaagtgttcatatgcctcagcaag 296
>gnl|LJGI|TC62621
Length = 736
Score = 200 bits (101), Expect = 9e-51
Identities = 289/352 (82%), Gaps = 6/352 (1%)
Strand = Plus / Plus
Query: 402 taagccagatggagcagtttataatttcttaattgttgaacattgtagatgtaaaaatgt 461
|||||||||||||||||| |||||||| ||||| |||| || |||||| | |||||
Sbjct: 113 taagccagatggagcagtctataatttattaatatttgatcactgtagaagaggcaatgt 172
Query: 462 tgataaggcatatgatatgtacatggagatggtgcagtgtggttttgcacctcatatgtt 521
| ||||||| ||||| ||||||| |||||||||||| | ||||||| |||||||||||
Sbjct: 173 taataaggcgtatgaaatgtacaaggagatggtgcattatggtttttttcctcatatgtt 232
Query: 522 ctccgtacttgctcttattaagactctatattatggtagaaggtacaatgagatgagttg 581
|| |||||| |||| ||| | |||||||||| | ||||| | ||| ||||||| ||||
Sbjct: 233 ttctgtactttctctgattcatgctctatattacgatagaaagaacagtgagatgggttg 292
Query: 582 ggtaattgaaaacacattgaggagctgtaatctcaatgattctgagctacataaactact 641
||||||| |||||||||||||||||||||||||||||||||||| |||||| || ||||
Sbjct: 293 ggtaattcgaaacacattgaggagctgtaatctcaatgattctgaactacatcaagtact 352
Query: 642 taatgaaattggcgtcaggaaaggtgaatttaaagaagatgctcttttcaatgtccttgc 701
||||||||||| |||| ||| || | || ||||||||||| |||| || ||
Sbjct: 353 taatgaaattgaagtcaagaagtgtaagatt------gatgctcttttgaatgcgctagc 406
Query: 702 tgaaatagccatggatggcctgttacttaatggaggaaagtgttcatatgct 753
| |||||||| |||||||| |||| ||| || | ||||||||||||||||||
Sbjct: 407 taaaatagccgtggatggcatgttgcttgatcgtggaaagtgttcatatgct 458
>gnl|LJGI|FS356651
Length = 566
Score = 186 bits (94), Expect = 1e-46
Identities = 178/206 (86%)
Strand = Plus / Minus
Query: 564 gtacaatgagatgagttgggtaattgaaaacacattgaggagctgtaatctcaatgattc 623
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 556 gtacaatgagaggagttgggtaattcaaaacacattgaggagctgtaatctcaatgattc 497
Query: 624 tgagctacataaactacttaatgaaattggcgtcaggaaaggtgaatttaaagaagatgc 683
||||||||||||| ||||||||||||||| | ||||||| | | | | | |
Sbjct: 496 tgagctacataaagtacttaatgaaattgacaccaggaaatttcctccaattggtgctac 437
Query: 684 tcttttcaatgtccttgctgaaatagccatggatggcctgttacttaatggaggaaagtg 743
|||||| |||| ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 436 tcttttggatgtgcttgctgaaatagccatggatggcctgttacttgatggtagaaagtg 377
Query: 744 ttcatatgctccagcaagtgcctaat 769
|||||||||| |||||||| ||||||
Sbjct: 376 ttcatatgcttcagcaagtacctaat 351
>gnl|LJGI|FS354708 weakly similar to UniRef100_Q9FIX3 Cluster: Gb|AAD30619.1; n=1;
Arabidopsis thaliana|Rep: Gb|AAD30619.1 - Arabidopsis
thaliana, partial (3%)
Length = 543
Score = 127 bits (64), Expect = 1e-28
Identities = 215/262 (82%), Gaps = 5/262 (1%)
Strand = Plus / Minus
Query: 503 gttttgcacctcatatgttctccgtacttgctcttattaagactctatattatggtagaa 562
||||||| ||||||||||||| ||||||||||||||||| | |||| | ||| | |||
Sbjct: 543 gttttgcttctcatatgttctctgtacttgctcttattaaagccctatttcatgttggaa 484
Query: 563 ggtacaatgagatgagttgggtaattgaaaacacattgaggagctgtaatctcaatgatt 622
|| |||||||| | || |||| ||| |||| ||||||||| |||||| |||||| ||
Sbjct: 483 ggcacaatgaggtaaggagggtcattcaaaatgtattgaggagttgtaatatcaatggtt 424
Query: 623 ctgagctacataaactacttaatgaaattggcgtcag-gaaaggtgaatttaaag---aa 678
||||||||||||| ||||| ||||| ||| |||| | ||| ||| ||||| ||
Sbjct: 423 ttgagctacataaagcacttagtgaaactggtgtcatcgtcagg-gaagataaagtgaaa 365
Query: 679 gatgctcttttcaatgtccttgctgaaatagccatggatggcctgttacttaatggagga 738
|||| |||||| ||||| || ||||||||||| |||||||||||| |||||||||| |||
Sbjct: 364 gatgttcttttgaatgtgctagctgaaatagcgatggatggcctgctacttaatggtgga 305
Query: 739 aagtgttcatatgctccagcaa 760
||||| ||||||||||||||||
Sbjct: 304 aagtgctcatatgctccagcaa 283
>gnl|LJGI|TC81881 similar to UniRef100_A6FHB6 Cluster: Spr protein; n=1; Moritella
sp. PE36|Rep: Spr protein - Moritella sp. PE36, partial
(8%)
Length = 419
Score = 113 bits (57), Expect = 2e-24
Identities = 149/180 (82%), Gaps = 6/180 (3%)
Strand = Plus / Plus
Query: 566 acaatgagatgagttgggtaattgaaaacacattgaggagctgtaatctcaatgattctg 625
|||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 7 acaatgagcggagatgggtaatacaaaacacattgaggagctgtaatctcaatgattttg 66
Query: 626 agctacataaactacttaatgaaattggcgtcaggaaaggtgaatttaaagaagatgctc 685
|||||| |||| |||| ||||| || ||| |||||||||| || |||||||
Sbjct: 67 agctacttaaagcacttcctgaaaatgatgtccagaaaggtgaaatt------gatgctc 120
Query: 686 ttttcaatgtccttgctgaaatagccatggatggcctgttacttaatggaggaaagtgtt 745
|||| ||||| | |||||| || |||||||||||||||||||||||| ||||||||||
Sbjct: 121 ttttgaatgtgttgactgaaaaagtcatggatggcctgttacttaatggtggaaagtgtt 180
>gnl|LJGI|AV776874 weakly similar to UniRef100_Q7X9F7 Cluster: Lectin; n=1; Galega
orientalis|Rep: Lectin - Galega orientalis, partial (7%)
Length = 588
Score = 101 bits (51), Expect = 6e-21
Identities = 140/169 (82%), Gaps = 8/169 (4%)
Strand = Plus / Minus
Query: 591 aaacacattgaggagctgtaatctcaatgattctgagctacataaactacttaatgaaat 650
|||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||
Sbjct: 578 aaacacattgaggagctgtaatctcaatgattctgagcaacttaaaatacttgatgaaat 519
Query: 651 tggcgtcaggaaaggt-gaatttaaagaagatgctcttttcaatgtccttgctgaaatag 709
|| | | || | || ||||| |||||||||| |||| || ||||||| ||
Sbjct: 518 tgaccgcgagagatgtataattt-------atgctcttttggatgtgctagctgaaaaag 466
Query: 710 ccatggatggcctgttacttaatggaggaaagtgttcatatgctccagc 758
||||||||||| |||||||| |||| |||||||||||||||||| ||||
Sbjct: 465 ccatggatggcttgttacttgatggtggaaagtgttcatatgcttcagc 417
>gnl|LJGI|FS338098 weakly similar to UniRef100_A7Q333 Cluster: Chromosome chr12
scaffold_47, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_47, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (3%)
Length = 792
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 598 ttgaggagctgtaatctcaatgattctg 625
||||||||||||||||||||||||||||
Sbjct: 765 ttgaggagctgtaatctcaatgattctg 792