Miyakogusa Predicted Gene
- Lj0g3v0081419.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0081419.1 Non Chatacterized Hit- tr|B9REU3|B9REU3_RICCO
Pre-rRNA-processing protein TSR2, putative OS=Ricinus
,48.03,3e-19,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
seg,NULL,CUFF.4227.1
(384 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59350 similar to UniRef100_A7Q5T8 Cluster: Chromosome... 351 2e-96
gnl|LJGI|TC66384 weakly similar to UniRef100_A7Q5T8 Cluster: Chr... 163 1e-39
>gnl|LJGI|TC59350 similar to UniRef100_A7Q5T8 Cluster: Chromosome chr14 scaffold_54,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_54, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (59%)
Length = 1120
Score = 351 bits (177), Expect = 2e-96
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 208 aacatcattggggctagtaactcttcaaacatggatgtggacattccaaaatctgaatca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aacatcattggggctagtaactcttcaaacatggatgtggacattccaaaatctgaatca 763
Query: 268 gacatgaattcagtaaacaggccagttaatgggactcttccaaaggttgcagctgaagct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gacatgaattcagtaaacaggccagttaatgggactcttccaaaggttgcagctgaagct 823
Query: 328 gatgatgaatggactgttgtttcaaacaggagaaataagggtagaaaaaattagatg 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gatgatgaatggactgttgtttcaaacaggagaaataagggtagaaaaaattagatg 880
Score = 329 bits (166), Expect = 7e-90
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 1 atgctttcactaaacgtagaggttgaggatggaagcgtcgaagaggtagctgaaaatctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atgctttcactaaacgtagaggttgaggatggaagcgtcgaagaggtagctgaaaatctg 556
Query: 61 atggttatgcatgaagaatgcttagaaggtaattttaggtctattgagattctcaaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atggttatgcatgaagaatgcttagaaggtaattttaggtctattgagattctcaaggaa 616
Query: 121 gccaatcttaaacaagctgctcatcctcgtgtaacacagattgtca 166
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gccaatcttaaacaagctgctcatcctcgtgtaacacagattgtca 662
>gnl|LJGI|TC66384 weakly similar to UniRef100_A7Q5T8 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (48%)
Length = 680
Score = 163 bits (82), Expect = 1e-39
Identities = 145/166 (87%)
Strand = Plus / Plus
Query: 1 atgctttcactaaacgtagaggttgaggatggaagcgtcgaagaggtagctgaaaatctg 60
|||||||| ||||| ||||||||||||||||||||| | ||||||||||||| |||| |
Sbjct: 321 atgctttctctaaatgtagaggttgaggatggaagcattgaagaggtagctggaaattta 380
Query: 61 atggttatgcatgaagaatgcttagaaggtaattttaggtctattgagattctcaaggaa 120
|||| ||||||||| |||||| |||| |||||||||||||| ||||| || |||| ||||
Sbjct: 381 atggctatgcatgacgaatgcgtagagggtaattttaggtccattgatatactcagggaa 440
Query: 121 gccaatcttaaacaagctgctcatcctcgtgtaacacagattgtca 166
|||||| |||| |||||||||| |||||| || ||||||||||||
Sbjct: 441 gccaatattaagcaagctgctcgtcctcgactagcacagattgtca 486
Score = 93.7 bits (47), Expect = 7e-19
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 208 aacatcattggggctagtaactcttcaaacatggatgtggacattccaaaatctgaatca 267
||||| ||||||| | ||||||||||||||||||||||||||| | ||| | ||| |||
Sbjct: 522 aacattattgggggtgataactcttcaaacatggatgtggacatccaaaattttgagtca 581
Query: 268 gacatgaattcagtaaacaggccagttaatg 298
||||||||||||||||||| ||||| |||||
Sbjct: 582 gacatgaattcagtaaacaagccagctaatg 612