Miyakogusa Predicted Gene

Lj0g3v0054389.1
Show Alignment: 
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0054389.1 Non Chatacterized Hit- tr|I3T952|I3T952_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.17,0,coiled-coil,NULL; seg,NULL; Snf7,Snf7; CHARGED
MULTIVESICULAR BODY PROTEIN 2A (CHROMATIN-MODIFYING
P,NODE_33197_length_914_cov_28.466084.path1.1
         (660 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81699 similar to UniRef100_UPI0000162818 Cluster: SNF...  1308   0.0  
gnl|LJGI|TC60361 similar to UniRef100_A7Q1Q7 Cluster: Chromosome...    96   3e-19
gnl|LJGI|TC79332 similar to UniRef100_A8QXD4 Cluster: Polyprotei...    72   5e-12

>gnl|LJGI|TC81699 similar to UniRef100_UPI0000162818 Cluster: SNF7 family protein;
           n=1; Arabidopsis thaliana|Rep: SNF7 family protein -
           Arabidopsis thaliana, partial (91%)
          Length = 968

 Score = 1308 bits (660), Expect = 0.0
 Identities = 660/660 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaacttgaacatcttcaagaagaaaacctcacccaaagaagctctgcggagtagtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  atgaacttgaacatcttcaagaagaaaacctcacccaaagaagctctgcggagtagtaag 136

                                                                       
Query: 61  agagaaatggctgttgcaacaagaggaattgaaaaggagatagcatcacttcagatggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 agagaaatggctgttgcaacaagaggaattgaaaaggagatagcatcacttcagatggag 196

                                                                       
Query: 121 gaaaggaaattggtggcagagattaaacgaacagccaaaaccggaaatgaggctgccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaaaggaaattggtggcagagattaaacgaacagccaaaaccggaaatgaggctgccact 256

                                                                       
Query: 181 agaatattggctcgtcaacttgttaggctacgccaacagataaccaatttgcagggaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agaatattggctcgtcaacttgttaggctacgccaacagataaccaatttgcagggaagt 316

                                                                       
Query: 241 cgtgctcagatcaggggtgttgcaactcacacacaggcattatatgcaagtacttcaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cgtgctcagatcaggggtgttgcaactcacacacaggcattatatgcaagtacttcaatc 376

                                                                       
Query: 301 tctacaggtatgaagggtgccactaaagcaatggtggcaatgaataagcaaatggcacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctacaggtatgaagggtgccactaaagcaatggtggcaatgaataagcaaatggcacca 436

                                                                       
Query: 361 gcaaagcaggcgaaggtgatccaagaattccaaaagcagtcagcacaaatggacatgacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcaaagcaggcgaaggtgatccaagaattccaaaagcagtcagcacaaatggacatgacg 496

                                                                       
Query: 421 attgagatgatgtcagaatccatagatgaaactttagacaaagatgaagctgaggaagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attgagatgatgtcagaatccatagatgaaactttagacaaagatgaagctgaggaagaa 556

                                                                       
Query: 481 acagaagagctcactaaccaggttcttgacgagattggagtggatattgcatcccagtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acagaagagctcactaaccaggttcttgacgagattggagtggatattgcatcccagtta 616

                                                                       
Query: 541 tcttctgctccgaaaggacggattggttcaaggagtgctgaaaatgttgcgccaagacca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcttctgctccgaaaggacggattggttcaaggagtgctgaaaatgttgcgccaagacca 676

                                                                       
Query: 601 gcagaatccaatgatgtggaagatcttgaaaagagactggcttctcttcggaggatatga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcagaatccaatgatgtggaagatcttgaaaagagactggcttctcttcggaggatatga 736


>gnl|LJGI|TC60361 similar to UniRef100_A7Q1Q7 Cluster: Chromosome chr7 scaffold_44,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_44, whole genome shotgun
           sequence - Vitis vinifera (Grape), complete
          Length = 917

 Score = 95.6 bits (48), Expect = 3e-19
 Identities = 189/236 (80%)
 Strand = Plus / Plus

                                                                       
Query: 307 ggtatgaagggtgccactaaagcaatggtggcaatgaataagcaaatggcaccagcaaag 366
           |||||||| || || | ||| |||||||  |||||||||||||||||||  || ||||||
Sbjct: 401 ggtatgaaaggcgctagtaaggcaatggcagcaatgaataagcaaatggatccggcaaag 460

                                                                       
Query: 367 caggcgaaggtgatccaagaattccaaaagcagtcagcacaaatggacatgacgattgag 426
           || || || || || |  |||||||| || || ||| | || ||||| ||||| | ||| 
Sbjct: 461 caagccaaagttatgctggaattccagaaacaatcaacgcagatggatatgactactgaa 520

                                                                       
Query: 427 atgatgtcagaatccatagatgaaactttagacaaagatgaagctgaggaagaaacagaa 486
           |||||||||||  ||||||||||  |  ||||||| ||||||||||| || || || || 
Sbjct: 521 atgatgtcagatgccatagatgatgcaatagacaatgatgaagctgaagaggagactgat 580

                                                                   
Query: 487 gagctcactaaccaggttcttgacgagattggagtggatattgcatcccagttatc 542
           ||||| || |||||||||||||| || ||||| |||||| |||| || ||||||||
Sbjct: 581 gagctgacaaaccaggttcttgatgaaattggtgtggatgttgcctcacagttatc 636


>gnl|LJGI|TC79332 similar to UniRef100_A8QXD4 Cluster: Polyprotein; n=1; Human
           immunodeficiency virus 1|Rep: Polyprotein - Human
           immunodeficiency virus 1, partial (4%)
          Length = 1001

 Score = 71.9 bits (36), Expect = 5e-12
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 1   atgaacttgaacatcttcaagaagaaaacctcacccaaag 40
           ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 510 atgaacttgaacatcttcaagaagaaaacctcatccaaag 549