BLAST2 result
BLASTP 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33194.1 1070 aa
(1070 letters)
Database: nr
640,428 sequences; 201,912,487 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11465946 RNA polymerase beta subunit [Nicotiana tabacum] >gi|... 1987 0.0
gi|11497516 RNA polymerase beta subunit [Spinacia oleracea] >gi|... 1980 0.0
gi|7525025 RNA polymerase beta subunit [Arabidopsis thaliana] >g... 1931 0.0
sp|P46818|RPOB_SINAL DNA-DIRECTED RNA POLYMERASE BETA CHAIN >gi|... 1927 0.0
pir||S48842 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 1927 0.0
emb|CAB67151.1| (AJ271079) RNA polymerase beta subunit [Oenother... 1925 0.0
sp|P50546|RPOB_ARATH DNA-DIRECTED RNA POLYMERASE BETA CHAIN 1924 0.0
emb|CAA74024.1| (Y13690) DNA-dependent RNA polymerase subunit be... 1924 0.0
prf||1211235T RNA polymerase beta [Nicotiana tabacum] 1865 0.0
gi|11466777 RNA polymerase beta subunit [Oryza sativa] >gi|13341... 1680 0.0
dbj|BAA78040.1| (AB027572) RNA polymerase subunit beta [Triticum... 1678 0.0
gi|11467182 RNA polymerase beta subunit [Zea mays] >gi|133414|sp... 1678 0.0
prf||1603356P RNA polymerase beta [Oryza sativa] 1574 0.0
gi|7524615 RNA polymerase beta subunit [Pinus thunbergii] >gi|11... 1530 0.0
gi|11466679 rpoB [Marchantia polymorpha] >gi|133415|sp|P06272|RP... 1477 0.0
gi|11466382 beta subunit of RNA polymerase [Mesostigma viride] >... 1003 0.0
gi|11467690 RNA polymerase b-chain [Guillardia theta] >gi|609412... 964 0.0
sp|P77965|RPOB_SYNY3 DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 963 0.0
gi|11465718 DNA-directed RNA polymerase beta chain [Porphyra pur... 950 0.0
gi|11465577 unknown; DNA-directed RNA polymerase beta chain [Cya... 912 0.0
gi|11467373 beta subunit of RNA polymerase [Cyanophora paradoxa]... 907 0.0
gi|11467788 beta subunit of RNA polymerase [Nephroselmis olivace... 895 0.0
sp|P08036|RPOB_SAPOF DNA-DIRECTED RNA POLYMERASE BETA CHAIN >gi|... 772 0.0
sp|P36440|RPOB_HETCA DNA-DIRECTED RNA POLYMERASE BETA CHAIN >gi|... 752 0.0
gi|11467566 RNA polymerase beta-chain [Odontella sinensis] >gi|1... 735 0.0
gb|AAF60349.1|AF242549_1 (AF242549) DNA-dependent RNA polymerase... 718 0.0
emb|CAB77428.1| (AL160431) DNA-directed RNA polymerase beta chai... 716 0.0
emb|CAC30845.1| (AL583923) [beta] subunit of RNA polymerase [Myc... 713 0.0
sp|P47766|RPOB_MYCTU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 711 0.0
pir||F70535 probable rpoB protein - Mycobacterium tuberculosis (... 711 0.0
gb|AAA21416.1| (L27989) RNA polymerase beta-subunit [Mycobacteri... 703 0.0
sp|P30760|RPOB_MYCLE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 691 0.0
pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core ... 688 0.0
emb|CAB65465.2| (Y19223) RNA polymerase, beta subunit [Thermus a... 688 0.0
gi|11467044 RNA polymerase subunit [Euglena gracilis] >gi|133397... 680 0.0
gb|AAA91426.2| (U24494) DNA polymerase [Mycobacterium smegmatis] 678 0.0
gb|AAA20242.2| (U12205) RNA-polymerase beta subunit [Mycobacteri... 677 0.0
pir||S52324 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 659 0.0
sp|O83269|RPOB_TREPA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 656 0.0
sp|Q59191|RPOB_BORBU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 656 0.0
pir||G75459 DNA-directed RNA polymerase, beta subunit - Deinococ... 653 0.0
sp|Q9Z9M2|RPOB_BACHD DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 637 0.0
emb|CAB56706.1| (Y16468) DNA-dependent RNA polymerase subunit be... 635 0.0
gb|AAK05898.1|AE006409_8 (AE006409) DNA-directed RNA polymerase ... 635 e-180
sp|P47768|RPOB_STAAU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 634 e-180
emb|CAC10557.1| (Y16469) DNA-dependent RNA polymerase subunit be... 633 e-180
gb|AAF73184.1|AF150880_1 (AF150880) RNA polymerase beta subunit ... 632 e-180
sp|P37870|RPOB_BACSU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 623 e-177
sp|P47767|RPOB_SPICI DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 617 e-175
gb|AAC37118.1| (L48488) RNA polymerase beta subunit [Borrelia bu... 615 e-174
gb|AAD48492.1|AF172323_1 (AF172323) RNA polymerase beta subunit ... 614 e-174
gi|12545412 RNA polymerase subunit [Astasia longa] >gi|12329876|... 596 e-169
sp|P29398|RPOB_THEMA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 593 e-168
emb|CAC10527.1| (Y16472) DNA-dependent RNA polymerase subunit be... 566 e-160
emb|CAC10556.1| (Y16467) DNA-dependent RNA polymerase subunit be... 563 e-159
emb|CAC10529.1| (Y16466) DNA-dependent RNA polymerase subunit be... 558 e-157
gi|12045200 DNA-directed RNA polymerase, subunit beta (rpoB) [My... 544 e-153
pir||C82923 DNA-directed RNA polymerase beta subunit UU187 [impo... 532 e-150
emb|CAC10572.1| (Y16471) DNA-dependent RNA polymerase subunit be... 502 e-141
pir||S26873 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 492 e-138
gi|7524891 RNA polymerase beta subunit [Chlorella vulgaris] >gi|... 464 e-129
sp|P47715|RPOB_MYCGA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 457 e-127
gb|AAF87049.1|AF171070_1 (AF171070) RNA polymerase beta subunit ... 445 e-123
sp|P78013|RPOB_MYCPN DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 445 e-123
gb|AAF80850.1|AF165994_1 (AF165994) RNA polymerase beta subunit ... 443 e-123
gb|AAG48562.1|AF236795_1 (AF236795) RNA polymerase beta subunit ... 442 e-122
gb|AAC69338.1| (AF087812) RNA polymerase B-subunit [Legionella p... 439 e-122
gb|AAF22439.1|AF076437_1 (AF076437) RNA polymerase beta subunit;... 439 e-122
sp|O52271|RPOB_RICPR DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 439 e-122
gb|AAF22433.1|AF076434_1 (AF076434) RNA polymerase beta subunit;... 437 e-121
gb|AAF22431.1| (AF076433) RNA polymerase beta subunit; RpoB [Ric... 437 e-121
gb|AAF22437.1|AF076436_1 (AF076436) RNA polymerase beta subunit;... 436 e-121
gb|AAF22435.1| (AF076435) RNA polymerase beta subunit; RpoB [Ric... 436 e-121
gb|AAF33499.1| (AF170176) Salmonella typhimurium DNA-directed RN... 435 e-120
sp|P06173|RPOB_SALTY DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 435 e-120
gb|AAG59183.1|AE005630_3 (AE005630) RNA polymerase, beta subunit... 435 e-120
sp|P00575|RPOB_ECOLI DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 434 e-120
sp|Q51561|RPOB_PSEAE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 434 e-120
gb|AAA27215.1| (M38311) RNA polymerase (EC 2.7.7.6) [Salmonella ... 433 e-120
gb|AAC43085.1| (U00006) DNA-directed RNA polymerase, beta-subuni... 432 e-119
prf||0705170A polymerase beta,RNA [Escherichia coli] 431 e-119
gb|AAA24585.1| (M38287) RNA polymerase beta subunit (EC 2.7.7.6)... 431 e-119
emb|CAA23625.1| (V00339) rpoB [Escherichia coli] >gi|42821|emb|C... 431 e-119
sp|O87903|RPOB_COXBU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 430 e-119
sp|P43738|RPOB_HAEIN DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 426 e-118
sp|P57146|RPOB_BUCAI DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 425 e-117
pir||F82336 DNA-directed RNA polymerase, beta chain VC0328 [impo... 423 e-117
sp|P41184|RPOB_BUCAP DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 422 e-117
gb|AAK03821.1| (AE006211) RpoB [Pasteurella multocida] 421 e-116
sp|Q59622|RPOB_NEIMB DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 416 e-115
pir||A81236 DNA-directed RNA polymerase, beta chain NMB0132 [imp... 416 e-115
sp|P57009|RPOB_NEIMA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 415 e-114
dbj|BAA99392.1| (AB045725) RNA polymerase beta subunit [Shewanel... 414 e-114
prf||1606216A RNA polymerase beta [Pseudomonas putida] 414 e-114
sp|P19175|RPOB_PSEPU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 414 e-114
sp|P56869|RPOB_CHLMU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 412 e-113
pir||E82533 RNA polymerase beta subunit XF2633 [imported] - Xyle... 411 e-113
dbj|BAA98291.1| (AP002545) RNA polymerase beta [Chlamydophila pn... 411 e-113
pir||F81548 DNA-directed RNA polymerase, beta chain CP0694 [impo... 411 e-113
sp|Q9Z9A0|RPOB_CHLPN DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 411 e-113
sp|O84317|RPOB_CHLTR DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 406 e-112
emb|CAA52957.1| (X75046) DNA dependent RNA polymerase [Aquifex p... 400 e-110
sp|O67762|RPOB_AQUAE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 400 e-110
emb|CAC10563.1| (Y16470) DNA-dependent RNA polymerase subunit be... 399 e-110
pir||T30824 RNA polymerase beta subunit - Neisseria meningitidis... 393 e-108
sp|Q46124|RPOB_CAMJE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 391 e-107
pir||S41868 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 387 e-106
pir||F64669 DNA-directed RNA polymerase, beta subunit - Helicoba... 381 e-104
pir||B71846 dna-directed RNA polymerase, beta chain - Helicobact... 377 e-103
gb|AAD17842.1| (AF095904) DNA dependent RNA polymerase beta subu... 366 e-100
gi|11496555 RNA polymerase B [Toxoplasma gondii] >gi|5231258|gb|... 365 2e-99
gb|AAF14261.1|AF138960_2 (AF138960) DNA dependent RNA polymerase... 364 4e-99
sp|P77941|RPOB_RICTY DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 363 8e-99
gb|AAB88811.1| (AF035660) DNA-dependent RNA polymerase beta subu... 360 4e-98
gb|AAB47279.1| (U86609) DNA-directed RNA polymerase homolog [Hel... 345 2e-93
dbj|BAA02417.1| (D13109) rpoB protein [Oryza sativa] 305 2e-81
sp|P21421|RPOB_PLAFA DNA-DIRECTED RNA POLYMERASE BETA CHAIN >gi|... 282 1e-74
emb|CAA36427.1| (X52177) RNA polymerase beta subunit (697 AA) [P... 272 1e-71
pir||S26872 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 265 2e-69
emb|CAC14805.1| (AJ270501) RNA polymerase beta subunit [Neisseri... 255 2e-66
emb|CAC14804.1| (AJ270500) RNA polymerase beta subunit [Neisseri... 255 2e-66
emb|CAC14806.1| (AJ270502) RNA polymerase beta subunit [Neisseri... 253 7e-66
emb|CAC14802.1| (AJ270498) RNA polymerase beta subunit [Neisseri... 252 1e-65
emb|CAC14799.1| (AJ270495) RNA polymerase beta subunit [Neisseri... 250 8e-65
emb|CAC14798.1| (AJ270494) RNA polymerase beta subunit [Neisseri... 249 1e-64
prf||1411173A RNA polymerase beta [Pseudomonas putida] 240 7e-62
pir||S77830 probable DNA-directed RNA polymerase (EC 2.7.7.6) be... 236 8e-61
emb|CAB36987.1| (AJ236789) RNA polymerase beta subunit [Streptoc... 235 3e-60
gb|AAF08836.1| (AF194512) RNA polymerase beta subunit [Streptoco... 233 7e-60
emb|CAB36989.1| (AJ236791) RNA polymerase beta subunit [Streptoc... 232 2e-59
emb|CAB36990.1| (AJ236792) RNA polymerase beta subunit [Streptoc... 231 3e-59
gb|AAF08834.1| (AF194510) RNA polymerase beta subunit [Streptoco... 230 8e-59
gb|AAF08844.1| (AF194522) RNA polymerase beta subunit [Streptoco... 229 1e-58
gb|AAF08852.1| (AF194516) RNA polymerase beta subunit [Streptoco... 228 2e-58
gb|AAF08850.1| (AF194528) RNA polymerase beta subunit [Streptoco... 228 3e-58
gb|AAF08838.1| (AF194514) RNA polymerase beta subunit [Streptoco... 227 7e-58
emb|CAB36988.1| (AJ236790) RNA polymerase beta subunit [Streptoc... 227 7e-58
gb|AAF08846.1| (AF194524) RNA polymerase beta subunit [Streptoco... 223 1e-56
gb|AAF80844.1| (AF165988) RNA polymerase beta subunit [Bartonell... 222 1e-56
gb|AAF08842.1| (AF194520) RNA polymerase beta subunit [Streptoco... 222 1e-56
gb|AAF08848.1| (AF194526) RNA polymerase beta subunit [Streptoco... 220 5e-56
gb|AAF87050.1|AF171071_1 (AF171071) RNA polymerase beta subunit ... 219 1e-55
gb|AAF80849.1|AF165993_1 (AF165993) RNA polymerase beta subunit ... 219 1e-55
gb|AAF08832.1| (AF194508) RNA polymerase beta subunit [Granulica... 219 2e-55
gb|AAF80853.1|AF165997_1 (AF165997) RNA polymerase beta subunit ... 218 3e-55
gb|AAF80848.1|AF165992_1 (AF165992) RNA polymerase beta subunit ... 218 3e-55
gb|AAF80852.1|AF165996_1 (AF165996) RNA polymerase beta subunit ... 218 3e-55
gb|AAF80847.1|AF165991_1 (AF165991) RNA polymerase beta subunit ... 218 3e-55
gb|AAF80851.1|AF165995_1 (AF165995) RNA polymerase beta subunit ... 217 4e-55
gb|AAF80843.1| (AF165987) RNA polymerase beta subunit [Bartonell... 217 4e-55
gb|AAF80845.1|AF165989_1 (AF165989) RNA polymerase beta subunit ... 217 6e-55
gb|AAA25985.1| (M99386) RNA polymerase [Pseudomonas aeruginosa] 217 7e-55
gb|AAF80846.1|AF165990_1 (AF165990) RNA polymerase beta subunit ... 215 2e-54
gb|AAF08840.1| (AF194518) RNA polymerase beta subunit [Streptoco... 213 1e-53
gi|11466500 RNA polymerase subunit beta [Reclinomonas americana]... 211 3e-53
pir||JN0419 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 209 1e-52
gb|AAB88812.1| (AF035660) DNA-dependent RNA polymerase beta subu... 201 5e-50
gb|AAC38472.1| (AF060292) RNA polymerase beta-subunit [Mycobacte... 197 7e-49
gb|AAC38487.1| (AF060307) RNA polymerase beta-subunit [Mycobacte... 196 9e-49
gb|AAC38461.1| (AF060281) RNA polymerase beta-subunit [Mycobacte... 196 9e-49
gb|AAC38525.1| (AF060345) RNA polymerase beta-subunit [Mycobacte... 196 1e-48
gb|AAC38488.1| (AF060308) RNA polymerase beta-subunit [Mycobacte... 196 1e-48
gb|AAC38504.1| (AF060324) RNA polymerase beta-subunit [Mycobacte... 196 2e-48
gb|AAC38503.1| (AF060323) RNA polymerase beta-subunit [Mycobacte... 195 2e-48
gb|AAC38491.1| (AF060311) RNA polymerase beta-subunit [Mycobacte... 195 2e-48
gb|AAC38489.1| (AF060309) RNA polymerase beta-subunit [Mycobacte... 195 2e-48
gb|AAC38501.1| (AF060321) RNA polymerase beta-subunit [Mycobacte... 195 3e-48
gb|AAC38474.1| (AF060294) RNA polymerase beta-subunit [Mycobacte... 194 4e-48
gb|AAC38536.1| (AF060356) RNA polymerase beta-subunit [Mycobacte... 194 5e-48
gb|AAC38512.1| (AF060332) RNA polymerase beta-subunit [Mycobacte... 194 5e-48
gb|AAC38463.1| (AF060283) RNA polymerase beta-subunit [Mycobacte... 194 5e-48
gb|AAC38535.1| (AF060355) RNA polymerase beta-subunit [Mycobacte... 194 6e-48
gb|AAC38500.1| (AF060320) RNA polymerase beta-subunit [Mycobacte... 194 6e-48
gb|AAC38470.1| (AF060290) RNA polymerase beta-subunit [Mycobacte... 194 6e-48
gb|AAC38459.1| (AF060279) RNA polymerase beta-subunit [Mycobacte... 194 6e-48
gb|AAC38533.1| (AF060353) RNA polymerase beta-subunit [Mycobacte... 193 8e-48
gb|AAC38490.1| (AF060310) RNA polymerase beta-subunit [Mycobacte... 193 8e-48
gb|AAC38478.1| (AF060298) RNA polymerase beta-subunit [Mycobacte... 193 1e-47
gb|AAC38465.1| (AF060285) RNA polymerase beta-subunit [Mycobacte... 193 1e-47
gb|AAC38462.1| (AF060282) RNA polymerase beta-subunit [Mycobacte... 193 1e-47
gb|AAC38483.1| (AF060303) RNA polymerase beta-subunit [Mycobacte... 192 2e-47
gb|AAC38528.1| (AF060348) RNA polymerase beta-subunit [Mycobacte... 191 3e-47
gb|AAC38527.1| (AF060347) RNA polymerase beta-subunit [Mycobacte... 191 3e-47
gb|AAC38469.1| (AF060289) RNA polymerase beta-subunit [Mycobacte... 191 3e-47
gb|AAC38460.1| (AF060280) RNA polymerase beta-subunit [Mycobacte... 191 3e-47
gb|AAC38542.1| (AF060362) RNA polymerase beta-subunit [Mycobacte... 190 7e-47
gb|AAC38529.1| (AF060349) RNA polymerase beta-subunit [Mycobacte... 188 3e-46
gb|AAC38546.1| (AF060366) RNA polymerase beta-subunit [Mycobacte... 187 6e-46
gb|AAC38524.1| (AF060344) RNA polymerase beta-subunit [Mycobacte... 187 6e-46
gb|AAC38544.1| (AF060364) RNA polymerase beta-subunit [Mycobacte... 185 2e-45
gb|AAC38530.1| (AF060350) RNA polymerase beta-subunit [Mycobacte... 183 7e-45
sp|P27059|RPOB_ASTLO DNA-DIRECTED RNA POLYMERASE BETA CHAIN >gi|... 183 1e-44
gb|AAC38526.1| (AF060346) RNA polymerase beta-subunit [Mycobacte... 182 3e-44
pir||G72571 probable DNA-directed RNA polymerase subunit B APE18... 177 5e-43
gb|AAC38475.1| (AF060295) RNA polymerase beta-subunit [Mycobacte... 174 6e-42
sp|O27124|RPB1_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 173 1e-41
sp|Q10578|RPB2_CAEEL DNA-DIRECTED RNA POLYMERASE II SECOND LARGE... 173 1e-41
gi|4505941 polymerase (RNA) II (DNA directed) polypeptide B (140... 170 9e-41
pir||A27826 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 169 2e-40
sp|P09845|RPB1_METTW DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 169 2e-40
sp|P08266|RPB2_DROME DNA-DIRECTED RNA POLYMERASE II 140 KDA POLY... 168 3e-40
pir||A75182 DNA-directed RNA polymerase (EC 2.7.7.6) chain B PAB... 168 3e-40
pir||A71032 probable DNA-directed RNA polymerase subunit B - Pyr... 168 3e-40
gi|11499471 DNA-directed RNA polymerase, subunit B' (rpoB1) [Arc... 166 1e-39
sp|P15351|RPB1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 166 2e-39
emb|CAA29180.2| (X05709) RNA polymerase [Drosophila melanogaster] 164 4e-39
sp|P31814|RPOB_THECE DNA-DIRECTED RNA POLYMERASE SUBUNIT B >gi|2... 160 1e-37
sp|Q03587|RPOB_THEAC DNA-DIRECTED RNA POLYMERASE SUBUNIT B >gi|2... 159 2e-37
sp|Q60181|RPB1_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 157 5e-37
gb|AAD13874.1|S54288_1 (S54288) Unknown [Helianthus] 156 1e-36
sp|P41557|RPB1_METVA DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 156 1e-36
pir||T16011 hypothetical protein F09F7.3 - Caenorhabditis elegan... 156 1e-36
pir||T05846 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 154 6e-36
pir||S30229 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 154 6e-36
pir||S70415 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 152 2e-35
sp|P38420|RPB2_ARATH DNA-DIRECTED RNA POLYMERASE II 135 KDA POLY... 152 2e-35
sp|P11513|RPOB_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT B >gi|8... 152 3e-35
pir||S39579 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 150 6e-35
gb|AAF58590.1| (AE003823) RpIII128 gene product [Drosophila mela... 146 1e-33
sp|Q42877|RPB2_LYCES DNA-DIRECTED RNA POLYMERASE II 135 KDA POLY... 146 1e-33
prf||0612199A polymerase beta,RNA [Escherichia coli] 146 1e-33
pir||I52541 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 146 1e-33
gi|6324725 second largest subunit of RNA polymerase II; Rpb2p [S... 146 1e-33
sp|P22703|RPOB_ANASP DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 146 2e-33
sp|P25167|RPC2_DROME DNA-DIRECTED RNA POLYMERASE III 128 KD POLY... 145 4e-33
gb|AAF19059.1|AF107787_1 (AF107787) DNA-dependent RNA polymerase... 144 5e-33
pir||T49421 probable DNA-directed RNA polymerase III second-larg... 144 6e-33
gb|AAF24995.1|AF129448_1 (AF129448) RpoB [Klebsiella terrigena] 143 1e-32
gb|AAA68096.1| (M15693) RNA polymerase II 48 kd subunit [Sacchar... 143 1e-32
gb|AAD48049.1| (AF170689) RNA polymerase beta subunit [Klebsiell... 142 2e-32
gb|AAD09615.1| (U77445) RNA polymerase beta-subunit [Proteus mir... 142 2e-32
gb|AAD48050.1| (AF170690) RNA polymerase beta subunit [Klebsiell... 141 4e-32
gb|AAD09603.1| (U77434) RNA polymerase beta-subunit [Citrobacter... 140 7e-32
gb|AAF19069.1|AF107797_1 (AF107797) DNA-dependent RNA polymerase... 140 9e-32
gb|AAD09616.1| (U77446) RNA polymerase beta-subunit [Providencia... 140 9e-32
gb|AAD09605.1| (U77436) RNA polymerase beta-subunit [Escherichia... 140 9e-32
sp|O54888|RPA2_RAT DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPT... 139 1e-31
gb|AAD09614.1| (U77444) RNA polymerase beta-subunit [Klebsiella ... 139 2e-31
gb|AAC94960.1| (AF008577) RNA polymerase beta-subunit [Salmonell... 139 2e-31
dbj|BAB14082.1| (AK022533) unnamed protein product [Homo sapiens] 139 2e-31
gb|AAD09618.1| (U77451) RNA polymerase beta-subunit [Salmonella ... 139 2e-31
gb|AAD09607.1| (U77438) RNA polymerase beta-subunit [Hafnia alvei] 139 2e-31
gb|AAD09606.1| (U77437) RNA polymerase beta-subunit [Escherichia... 139 2e-31
gb|AAD09613.1| (U77443) RNA polymerase beta-subunit [Klebsiella ... 138 3e-31
gb|AAF19065.1|AF107793_1 (AF107793) DNA-dependent RNA polymerase... 138 4e-31
gb|AAC94961.1| (AF008578) RNA polymerase beta-subunit [Yersinia ... 138 4e-31
pir||T50175 dna-directed rna polymerase ii 138 kd polypeptide [i... 138 5e-31
sp|Q02061|RPB2_SCHPO DNA-DIRECTED RNA POLYMERASE II 138 KD POLYP... 138 5e-31
gb|AAB59068.1| (L05910) RNA polymerase beta subunit [Mycobacteri... 138 5e-31
sp|Q10233|RPC2_SCHPO PUTATIVE DNA-DIRECTED RNA POLYMERASE III 13... 137 6e-31
dbj|BAB14296.1| (AK022890) unnamed protein product [Homo sapiens] 137 8e-31
gb|AAD10530.1| (U77449) RNA polymerase beta-subunit [Serratia ma... 137 8e-31
gi|6677789 RNA polymerase 1-2 (128 kDa subunit) [Mus musculus] >... 137 8e-31
gb|AAF19078.1|AF107806_1 (AF107806) DNA-dependent RNA polymerase... 136 1e-30
gb|AAC09367.1| (AF055028) RNA polymerase II 140 kDa subunit [Hom... 136 1e-30
gb|AAD10531.1| (U77453) RNA polymerase beta-subunit [Yersinia en... 136 2e-30
gb|AAF19080.1|AF107808_1 (AF107808) DNA-dependent RNA polymerase... 135 2e-30
gb|AAF19079.1|AF107807_1 (AF107807) DNA-dependent RNA polymerase... 135 2e-30
gb|AAF19073.1|AF107801_1 (AF107801) DNA-dependent RNA polymerase... 135 2e-30
dbj|BAB15175.1| (AK025574) unnamed protein product [Homo sapiens] 135 3e-30
dbj|BAB11387.1| (AB012240) DNA-directed RNA polymerase subunit [... 134 4e-30
gb|AAF19077.1|AF107805_1 (AF107805) DNA-dependent RNA polymerase... 133 9e-30
gb|AAC64013.1| (AF064612) RNA polymerase II subunit 2 [Chironia ... 133 9e-30
gb|AAA84490.1| (M31206) rpoB protein [Zea mays] 133 9e-30
gb|AAF51503.1| (AE003589) RpI135 gene product [Drosophila melano... 133 1e-29
gb|AAF24994.1|AF129447_1 (AF129447) RpoB [Klebsiella ornithinoly... 133 1e-29
gi|6324781 second-largest subunit of RNA polymerase III; Ret1p [... 132 2e-29
gb|AAB59324.1| (M38723) RNA polymerase III [Saccharomyces cerevi... 132 2e-29
sp|P20028|RPA2_DROME DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPE... 132 2e-29
emb|CAB95348.1| (AL359782) possible putative DNA-directed RNA po... 132 3e-29
gb|AAF19064.1|AF107792_1 (AF107792) DNA-dependent RNA polymerase... 132 3e-29
gb|AAF19075.1|AF107803_1 (AF107803) DNA-dependent RNA polymerase... 131 4e-29
gb|AAF19074.1|AF107802_1 (AF107802) DNA-dependent RNA polymerase... 131 4e-29
pir||A36135 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 131 4e-29
gb|AAF19081.1|AF107809_1 (AF107809) DNA-dependent RNA polymerase... 131 5e-29
gb|AAF19076.1|AF107804_1 (AF107804) DNA-dependent RNA polymerase... 131 5e-29
gb|AAC64012.1| (AF064611) RNA polymerase II subunit 2 [Periploca... 131 5e-29
gb|AAF19071.1|AF107799_1 (AF107799) DNA-dependent RNA polymerase... 130 8e-29
emb|CAB43066.1| (AJ133226) RNA polymerase II [Gardneria angustif... 130 1e-28
emb|CAB43059.1| (AJ133225) RNA polymerase II [Antonia ovata] 130 1e-28
emb|CAB43088.1| (AJ133233) RNA polymerase II [Usteria guineensis] 129 1e-28
emb|CAB43074.1| (AJ133229) RNA polymerase II [Mitreola petiolata] 129 1e-28
emb|CAB43072.1| (AJ133227) RNA polymerase II [Logania vaginalis] 129 1e-28
gb|AAF19057.1|AF107785_1 (AF107785) DNA-dependent RNA polymerase... 129 2e-28
emb|CAB43081.1| (AJ133224) RNA polymerase II [Potalia resinifera] 129 2e-28
gb|AAF19072.1|AF107800_1 (AF107800) DNA-dependent RNA polymerase... 129 2e-28
emb|CAB43084.1| (AJ133232) RNA polymerase II [Spigelia anthelmia] 129 2e-28
emb|CAB43085.1| (AJ133219) RNA polymerase II [Stephanotis florib... 129 2e-28
dbj|BAA91527.1| (AK001161) unnamed protein product [Homo sapiens] 128 3e-28
emb|CAB43086.1| (AJ133231) RNA polymerase II [Strychnos potatorum] 128 3e-28
emb|CAB43080.1| (AJ133239) RNA polymerase II [Pinckneya pubescens] 128 3e-28
emb|CAB43073.1| (AJ133236) RNA polymerase II [Mussaenda erythrop... 128 3e-28
emb|CAB43068.1| (AJ133235) RNA polymerase II [Gardenia thunbergia] 128 3e-28
gi|8922399 hypothetical protein FLJ10388 [Homo sapiens] >gi|7022... 128 4e-28
emb|CAB43083.1| (AJ133240) RNA polymerase II [Rondeletia odorata] 128 4e-28
emb|CAB43064.1| (AJ133234) RNA polymerase II [Chiococca racemosa] 128 4e-28
emb|CAB43060.1| (AJ133218) RNA polymerase II [Alstonia scholaris] 128 4e-28
gb|AAF19063.1|AF107791_1 (AF107791) DNA-dependent RNA polymerase... 127 5e-28
emb|CAB43065.1| (AJ133223) RNA polymerase II [Fagraea sp.] 127 5e-28
emb|CAB43058.1| (AJ133222) RNA polymerase II [Anthocleista grand... 127 5e-28
gi|6325267 RNA polymerase I subunit A135; Rpa135p [Saccharomyces... 127 5e-28
gb|AAC64011.1| (AF064610) RNA polymerase II subunit 2 [Mostuea b... 127 7e-28
emb|CAB43075.1| (AJ133228) RNA polymerase II [Mitrasacme pilosa] 127 9e-28
emb|CAB43067.1| (AJ133221) RNA polymerase II [Gelsemium sempervi... 127 9e-28
gb|AAA50226.1| (U10335) RNA polymerase II, second largest subuni... 127 9e-28
emb|CAC18336.1| (AJ279967) RNA polymerase beta subunit [Pseudomo... 126 1e-27
emb|CAB43089.1| (AJ133220) RNA polymerase II [Wrightia arborea] 126 1e-27
gb|AAF19068.1|AF107796_1 (AF107796) DNA-dependent RNA polymerase... 126 2e-27
gb|AAF19067.1|AF107795_1 (AF107795) DNA-dependent RNA polymerase... 126 2e-27
emb|CAB43078.1| (AJ133238) RNA polymerase II [Ophiorrhiza mungos] 126 2e-27
gi|11436210 hypothetical protein FLJ10388 [Homo sapiens] 125 2e-27
gb|AAF19082.1|AF107810_1 (AF107810) DNA-dependent RNA polymerase... 125 2e-27
gb|AAF19058.1|AF107786_1 (AF107786) DNA-dependent RNA polymerase... 125 3e-27
emb|CAB43077.1| (AJ133237) RNA polymerase II [Oldenlandia corymb... 125 3e-27
gb|AAF19062.1|AF107790_1 (AF107790) DNA-dependent RNA polymerase... 124 5e-27
emb|CAB43061.1| (AJ133214) RNA polymerase II [Buddleja asiatica] 124 6e-27
gb|AAF19070.1|AF107798_1 (AF107798) DNA-dependent RNA polymerase... 123 8e-27
gb|AAC64010.1| (AF064609) RNA polymerase II subunit 2 [Kopsia fr... 123 1e-26
gb|AAC64014.1| (AF064613) RNA polymerase II subunit 2 [Kopsia fr... 123 1e-26
gi|9628161 RNA polymerase subunit 2 [African swine fever virus] ... 123 1e-26
emb|CAC18333.1| (AJ279966) RNA polymerase beta subunit [Pseudomo... 122 2e-26
sp|Q9P7X8|RPA2_SCHPO PROBABLE DNA-DIRECTED RNA POLYMERASE I 135 ... 122 2e-26
emb|CAB43079.1| (AJ133217) RNA polymerase II [Peltanthera florib... 122 2e-26
sp|P28365|RPA2_EUPOC DNA-DIRECTED RNA POLYMERASE I SECOND LARGES... 122 2e-26
emb|CAC18337.1| (AJ279953) RNA polymerase beta subunit [Pseudomo... 121 5e-26
pir||T20870 hypothetical protein F14B4.3 - Caenorhabditis elegan... 121 5e-26
emb|CAB43087.1| (AJ133216) RNA polymerase II [Sanango racemosum] 120 7e-26
emb|CAB43082.1| (AJ133215) RNA polymerase II [Retzia capensis] 120 7e-26
pir||T30515 DNA-directed RNA polymerase (EC 2.7.7.6) I 135K chai... 120 7e-26
emb|CAC18346.1| (AJ279962) RNA polymerase beta subunit [Pseudomo... 120 9e-26
emb|CAC18344.1| (AJ279960) RNA polymerase beta subunit [Pseudomo... 120 9e-26
emb|CAB43076.1| (AJ133230) RNA polymerase II [Neuburgia corynoca... 120 9e-26
emb|CAC18338.1| (AJ279954) RNA polymerase beta subunit [Pseudomo... 119 2e-25
pir||T43701 DNA-directed RNA polymerase (EC 2.7.7.6) II largest ... 119 2e-25
emb|CAC18349.1| (AJ279965) RNA polymerase beta subunit [Pseudomo... 118 3e-25
emb|CAC18343.1| (AJ279959) RNA polymerase beta subunit [Pseudomo... 118 3e-25
pir||B71608 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 118 3e-25
emb|CAC18341.1| (AJ279957) RNA polymerase beta subunit [Pseudomo... 118 5e-25
emb|CAC18345.1| (AJ279961) RNA polymerase beta subunit [Pseudomo... 117 6e-25
emb|CAC18339.1| (AJ279955) RNA polymerase beta subunit [Pseudomo... 117 6e-25
emb|CAC18342.1| (AJ279958) RNA polymerase beta subunit [Pseudomo... 116 1e-24
dbj|BAB02021.1| (AB020749) DNA-dependent RNA polymerase II [Arab... 116 1e-24
gb|AAF75766.1|AF265351_1 (AF265351) DNA-directed RNA polymerase ... 116 1e-24
gb|AAB59983.1| (U12014) RNA-polymerase beta subunit [Mycobacteri... 116 1e-24
gb|AAC64015.1| (AF064614) RNA polymerase II subunit 2 [Mostuea b... 115 2e-24
emb|CAC18340.1| (AJ279956) RNA polymerase beta subunit [Pseudomo... 115 4e-24
gb|AAA50228.1| (U10337) RNA polymerase II, second largest subuni... 114 5e-24
gb|AAC83398.1| (U10332) RNA polymerase II, second largest subuni... 113 9e-24
dbj|BAB01854.1| (AP000377) DNA-directed RNA polymerase, subunit ... 113 2e-23
pir||S15965 hypothetical protein 6 - yeast (Saccharomyces kluyve... 112 3e-23
gb|AAB31948.1| (S74030) RNA polymerase beta subunit, RpoB [Neiss... 111 3e-23
gb|AAG52049.1|AC022455_3 (AC022455) DNA-directed RNA polymerase ... 109 1e-22
gb|AAG10602.1|AC008030_2 (AC008030) Similar to DNA-directed RNA ... 109 1e-22
gb|AAB88270.1| (U79729) RNA polymerase beta subunit [Plasmodium ... 108 5e-22
pir||T43847 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 107 9e-22
pir||T43837 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 106 2e-21
gb|AAC08937.1| (AF041852) RPB140 [Chloranthus spicatus] 105 3e-21
gb|AAC12776.1| (AF055891) rifampicin-resistant RNA polymerase be... 105 3e-21
emb|CAB94915.1| (AJ401154) Rpob protein [Mycobacterium haemophilum] 104 4e-21
gb|AAB94062.1| (AF020842) RPB140 [Aristolochia gigantea] 104 4e-21
gb|AAC08961.1| (AF043427) RNA polymerase II second largest subun... 103 1e-20
gb|AAC08960.1| (AF043426) RNA polymerase II second largest subun... 102 2e-20
gb|AAC12777.1| (AF055892) rifampicin-resistant RNA polymerase be... 102 3e-20
pir||T43842 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 101 7e-20
gb|AAC12778.1| (AF055893) rifampicin-resistant RNA polymerase be... 100 1e-19
prf||1410258A RNA polymerase beta mutant [Escherichia coli] 100 1e-19
gb|AAC95361.1| (AF101273) RNA polymerase B-subunit [Legionella p... 99 2e-19
pir||T43832 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 99 2e-19
emb|CAC08226.1| (AJ278986) putative RNA-polymerase [Pichia etche... 99 3e-19
gb|AAC95360.1| (AF101272) RNA polymerase B-subunit [Legionella m... 98 6e-19
gi|9633323 A25R protein [variola minor virus] >gi|7514172|pir||F... 98 6e-19
gi|9633924 gp114R [Rabbit fibroma virus] >gi|6578643|gb|AAF17997... 98 7e-19
gb|AAC95358.1| (AF101270) RNA polymerase B-subunit [Legionella b... 98 7e-19
pir||T37411 RNA polymerase subunit rpo132 - vaccinia virus (stra... 97 1e-18
pir||T43844 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 97 1e-18
gb|AAA42920.1| (M26173) rpo132 RNA polymerase (early and late) [... 97 1e-18
sp|P17474|RPO2_COWPX DNA-DIRECTED RNA POLYMERASE 132 KDA POLYPEP... 97 1e-18
gi|9791084 A24R; putative [Vaccinia virus] >gi|133383|sp|P19798|... 96 2e-18
gi|12085099 116R protein [Yaba-like disease virus] >gi|12056275|... 96 2e-18
gi|9634529 TA25R [Vaccinia virus (strain Tian Tan)] >gi|6969808|... 96 3e-18
pir||T28566 DNA-directed RNA polymerase (EC 2.7.7.6) 133K chain ... 96 3e-18
gi|9627649 A24R [Variola virus] >gi|464676|sp|P33811|RPO2_VARV D... 96 3e-18
gb|AAF19061.1|AF107789_1 (AF107789) DNA-dependent RNA polymerase... 94 8e-18
gi|9629061 MC129R [Molluscum contagiosum virus subtype 1] >gi|74... 94 8e-18
gi|9634859 ORF FPV189 RNA polymerase subunit, RPO132 [Fowlpox vi... 93 1e-17
gi|9633750 m114R [Myxoma virus] >gi|6523969|gb|AAF15002.1|AF1707... 92 2e-17
gb|AAF87946.1| (AF177295) RNA polymerase beta-subunit [Helicobac... 92 3e-17
dbj|BAA88887.1| (AB018404) similar to vaccinia A24R [Yaba monkey... 92 3e-17
sp|P16716|RPO2_CAPVK DNA-DIRECTED RNA POLYMERASE 132 KD POLYPEPT... 92 3e-17
gb|AAF19066.1|AF107794_1 (AF107794) DNA-dependent RNA polymerase... 91 6e-17
gb|AAG09669.1| (AF164228) RNA polymerase beta subunit [Borrelia ... 90 2e-16
gb|AAG09658.1| (AF164217) RNA polymerase beta subunit [Borrelia ... 90 2e-16
gb|AAD10545.1| (U01735) uncertain [Mycoplasma genitalium] 90 2e-16
gb|AAG09674.1| (AF164233) RNA polymerase beta subunit [Borrelia ... 89 2e-16
pir||S10340 DNA-directed RNA polymerase (EC 2.7.7.6) - yeast (K... 89 2e-16
emb|CAA30770.1| (X07946) RNA polymerase subunit (AA 1-982) [Kluy... 89 2e-16
sp|P05472|RPOL_KLULA PROBABLE DNA-DIRECTED RNA POLYMERASE (KILLE... 89 2e-16
gb|AAC34596.1| (AF085143) RNA polymerase beta subunit [Shewanell... 88 5e-16
emb|CAC21016.1| (AJ295717) RNA polymerase, beta subunit [Strepto... 87 8e-16
gb|AAF19060.1|AF107788_1 (AF107788) DNA-dependent RNA polymerase... 87 8e-16
emb|CAA77863.1| (Z11839) N-terminus of beta subunit of RNA polym... 87 1e-15
emb|CAA23629.1| (V00341) polymerase beta-subunit [Escherichia coli] 87 1e-15
gb|AAD55559.1| (AF057495) RNA polymerase beta [Nocardia nova] 84 9e-15
gb|AAD55528.1| (AF057464) RNA polymerase beta [Mycobacterium for... 84 9e-15
gb|AAF62904.1| (AF226067) RpoB [Bacillus sonorensis] >gi|7453597... 83 1e-14
gb|AAF62903.1| (AF226066) RpoB [Bacillus sonorensis] 83 1e-14
gb|AAF35376.1|AF226073_1 (AF226073) RNA polymerase beta subunit ... 83 2e-14
gb|AAD55557.1| (AF057493) RNA polymerase beta [Mycobacterium xen... 83 2e-14
gb|AAD55531.1| (AF057467) RNA polymerase beta [Mycobacterium gen... 83 2e-14
gb|AAD55526.1| (AF057462) RNA polymerase beta [Mycobacterium fal... 83 2e-14
gb|AAD55513.1| (AF057449) RNA polymerase beta [Mycobacterium abs... 83 2e-14
gb|AAF35377.1|AF226074_1 (AF226074) RNA polymerase beta subunit ... 82 4e-14
gb|AAD55544.1| (AF057480) RNA polymerase beta [Mycobacterium phlei] 82 4e-14
gb|AAD55525.1| (AF057461) RNA polymerase beta [Mycobacterium chi... 82 4e-14
gi|11499470 DNA-directed RNA polymerase, subunit B'' (rpoB2) [Ar... 82 4e-14
gb|AAF62902.1| (AF226065) RpoB [Bacillus sonorensis] 82 5e-14
gb|AAD55514.1| (AF057450) RNA polymerase beta [Mycobacterium afr... 81 6e-14
gb|AAD55522.1| (AF057458) RNA polymerase beta [Mycobacterium cel... 80 1e-13
gb|AAD55560.1| (AF057496) RNA polymerase beta [Corynebacterium d... 78 4e-13
gb|AAD34794.1| (AF136508) DNA-directed RNA polymerase beta and b... 78 4e-13
gb|AAD34796.1| (AF136510) DNA-directed RNA polymerase beta and b... 78 7e-13
gb|AAD34792.1| (AF136506) DNA-directed RNA polymerase beta and b... 76 2e-12
gb|AAD34800.1| (AF136515) DNA-directed RNA polymerase beta and b... 76 2e-12
gb|AAD04113.1| (AF087339) DNA-directed RNA polymerase beta subun... 76 2e-12
gb|AAD34799.1| (AF136513) DNA-directed RNA polymerase beta and b... 75 4e-12
gb|AAB57999.1| (U86941) similar to variola A25R and vaccinia A24... 75 6e-12
sp|Q58444|RPB2_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 75 6e-12
gb|AAD34801.1| (AF136517) DNA-directed RNA polymerase beta and b... 74 8e-12
sp|P15352|RPB2_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 74 8e-12
gb|AAD34798.1| (AF136512) DNA-directed RNA polymerase beta and b... 73 1e-11
gb|AAD34797.1| (AF136511) DNA-directed RNA polymerase beta and b... 73 2e-11
gb|AAD34795.1| (AF136509) DNA-directed RNA polymerase beta and b... 71 5e-11
gb|AAF08831.1| (AF194508) RNA polymerase beta subunit [Granulica... 71 7e-11
sp|O27123|RPB2_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 70 1e-10
gb|AAF87945.1|AF177294_1 (AF177294) RNA polymerase beta-subunit ... 70 2e-10
pir||S48594 hypothetical protein - Mycoplasma capricolum (SGC3) ... 69 2e-10
sp|P09844|RPB2_METTW DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 69 3e-10
pir||I52540 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 68 6e-10
gb|AAF08843.1| (AF194522) RNA polymerase beta subunit [Streptoco... 66 2e-09
gb|AAF08837.1| (AF194514) RNA polymerase beta subunit [Streptoco... 66 3e-09
gb|AAD34793.1| (AF136507) DNA-directed RNA polymerase beta and b... 65 4e-09
gb|AAF08002.1| (AF200646) RNA polymerase beta [Mycobacterium lep... 65 5e-09
sp|P41558|RPB2_METVA DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 65 5e-09
gb|AAF08845.1| (AF194524) RNA polymerase beta subunit [Streptoco... 64 7e-09
gb|AAF08841.1| (AF194520) RNA polymerase beta subunit [Streptoco... 64 7e-09
gb|AAF08839.1| (AF194518) RNA polymerase beta subunit [Streptoco... 64 7e-09
gb|AAF08001.1| (AF200645) RNA polymerase beta [Mycobacterium lep... 64 7e-09
gb|AAA72652.1| (M20391) RNA polymerase subunits B'' [Methanother... 64 7e-09
gb|AAF08851.1| (AF194516) RNA polymerase beta subunit [Streptoco... 64 9e-09
gb|AAF08849.1| (AF194528) RNA polymerase beta subunit [Streptoco... 64 9e-09
gb|AAF08003.1| (AF200647) RNA polymerase beta [Mycobacterium lep... 64 9e-09
gb|AAF07999.1| (AF200643) RNA polymerase beta [Mycobacterium lep... 64 9e-09
emb|CAA64391.1| (X94765) DNA-directed RNA polymerase I [Agaricus... 64 9e-09
emb|CAA51302.1| (X72787) RNA-polymerase beta subunit [Streptomyc... 64 9e-09
gb|AAF08007.1| (AF200924) RNA polymerase beta [Mycobacterium lep... 63 2e-08
gb|AAF07990.1| (AF200634) RNA polymerase beta [Mycobacterium lep... 63 2e-08
gb|AAA82612.1| (U33419) RNA polymerase subunit [orf virus] 63 2e-08
gb|AAF08833.1| (AF194510) RNA polymerase beta subunit [Streptoco... 63 2e-08
gb|AAF07995.1| (AF200639) RNA polymerase beta [Mycobacterium lep... 62 3e-08
gb|AAF07997.1| (AF200641) RNA polymerase beta [Mycobacterium lep... 62 5e-08
gb|AAF07989.1| (AF200633) RNA polymerase beta [Mycobacterium lep... 62 5e-08
gb|AAF08004.1| (AF200648) RNA polymerase beta [Mycobacterium lep... 61 6e-08
gb|AAF08000.1| (AF200644) RNA polymerase beta [Mycobacterium lep... 61 6e-08
gb|AAF08835.1| (AF194512) RNA polymerase beta subunit [Streptoco... 61 8e-08
sp|P36251|RPOB_CGDAB DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 61 8e-08
emb|CAC21017.1| (AJ295718) RNA polymerase, beta subunit [Strepto... 61 1e-07
gb|AAC25188.1| (AF068774) DNA-directed RNA polymerase subunit Rp... 61 1e-07
gb|AAF07993.1| (AF200637) RNA polymerase beta [Mycobacterium lep... 60 2e-07
gb|AAF07992.1| (AF200636) RNA polymerase beta [Mycobacterium lep... 59 2e-07
gb|AAF07998.1| (AF200642) RNA polymerase beta [Mycobacterium lep... 59 3e-07
gb|AAC25191.1| (AF068777) DNA-directed RNA polymerase subunit Rp... 59 3e-07
gb|AAF07988.1| (AF200632) RNA polymerase beta [Mycobacterium lep... 58 5e-07
gi|9964380 AMV066 [Amsacta moorei entomopoxvirus] >gi|9944589|gb... 56 2e-06
gb|AAB09573.1| (U70422) RNA polymerase beta-subunit [Mycobacteri... 56 2e-06
gi|11435960 polymerase (RNA) II (DNA directed) polypeptide B (14... 56 3e-06
gi|9631469 ORF MSV155 putative RNA polymerase second largest sub... 56 3e-06
gb|AAC34598.1| (AF085143) RNA polymerase beta subunit [Shewanell... 56 3e-06
gb|AAC25192.1| (AF068778) DNA-directed RNA polymerase subunit Rp... 54 8e-06
gb|AAC25194.1| (AF068779) DNA-directed RNA polymerase subunit Rp... 54 1e-05
gb|AAA18562.1| (M95075) putative. RNA polymerase II 140kD subuni... 54 1e-05
gb|AAD45507.1| (AF147033) RNA polymerase beta subunit [Mycobacte... 53 2e-05
gb|AAG02104.1| (AF292115) RNA polymerase beta-subunit [Mycobacte... 52 3e-05
gb|AAD45506.1| (AF147031) RNA polymerase beta subunit [Mycobacte... 51 9e-05
gb|AAD29720.1| (AF143771) RNA polymerase beta subunit [Mycobacte... 51 9e-05
emb|CAA63892.1| (X94182) RNA polymerase beta subunit [Myxoma virus] 50 2e-04
gb|AAD10547.1| (U01737) uncertain [Mycoplasma genitalium] 50 2e-04
dbj|BAB28301.1| (AK012532) putative [Mus musculus] 47 0.001
gb|AAD04947.1| (AF112973) multidrug-resistant RNA polymerase bet... 46 0.002
emb|CAB86470.1| (AL163481) dna-directed rna polymerase ii 138 kd... 45 0.005
gb|AAD45505.1| (AF147030) RNA polymerase beta subunit [Mycobacte... 44 0.009
gb|AAD45508.1| (AF147034) RNA polymerase beta subunit [Mycobacte... 44 0.011
gb|AAD37379.1| (AF146567) RNA polymerase beta subunit [Mycobacte... 44 0.011
prf||0601198A polymerase beta,RNA [Escherichia coli] 38 0.65
gb|AAC34599.1| (AF085143) RNA polymerase beta subunit [Shewanell... 36 2.5
gb|AAC47431.1| (U46561) RNA polymerase II subunit 2 [Tetrahymena... 35 5.7
gi|12727683 similar to DNA-directed RNA polymerase I (135 kDa) [... 34 7.4
gi|9631205 transport protein [Ateline herpesvirus 3] >gi|1127820... 34 9.7
>gi|11465946 RNA polymerase beta subunit [Nicotiana tabacum]
sp|P06271|RPOB_TOBAC DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||RNNTB DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - common tobacco
chloroplast
emb|CAA31238.1| (X12745) ORF 1070 (AA 1-1070); put. RNA polymerase beta-subunit
[Nicotiana tabacum]
emb|CAA77346.1| (Z00044) RNA polymerase beta subunit [Nicotiana tabacum]
Length = 1070
Score = 1987 bits (5090), Expect = 0.0
Identities = 969/1069 (90%), Positives = 1022/1069 (94%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
MLG GNEG+ST+PG NQIQFEGFCRFID+GLTEEL+KFPKIEDTDQEIEFQLFVETYQLV
Sbjct: 1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLV 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EP IKE+DAVYESLTYSSELYVSAGLIWKNS+++QEQTIFIGNIPLMNSLGTSIVNGIYR
Sbjct: 61 EPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYR 120
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQILQSPGIYY+SELDH GISVYTGTIISDWGGR ELEIDRKARIWARVSRKQKISI
Sbjct: 121 IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISI 180
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMG NL EILENVCYPEIFLSFL+DKE KKIGSKE+AILEFY+QFACVGGDPVF
Sbjct: 181 LVLSSAMGLNLREILENVCYPEIFLSFLSDKERKKIGSKENAILEFYQQFACVGGDPVFS 240
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC+ELQKKFFQQRCELG IGRRNMNRRLNLDIPQNNTFLLPRDIL AADHLIG+KF M
Sbjct: 241 ESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFGM 300
Query: 301 GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTP 360
G LDDMNHLKNKRIRSVADLLQDQFGLALVRLEN+VRGTICGAIR+KLIPTPQNLVTSTP
Sbjct: 301 GALDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTP 360
Query: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGR 420
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIH SHYGR
Sbjct: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR 420
Query: 421 ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIA 480
ICPIDTSEGINVGLIGSLAIHARIG WGS+ESPF+EISERS + MLYLSP RDEYYM+A
Sbjct: 421 ICPIDTSEGINVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLYLSPGRDEYYMVA 480
Query: 481 TGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDAN 540
GN LALNQ QEEQ+VPARYRQEFLTIAWEQVHLRSIF FQYFSIGASLIPFIEHNDAN
Sbjct: 481 AGNSLALNQDIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN 540
Query: 541 RALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGS 600
RALMSSNMQRQAVPLS+SEKCIVGTGLERQ ALDSG LAIAE EG+++Y +T+KI+L G+
Sbjct: 541 RALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGALAIAEREGRVVYTNTDKILLAGN 600
Query: 601 GETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYM 660
G+ LS+PLVIY+RSNKNTCMHQK QV RGKCIK+GQILADGAATVGGEL+LGKNVLVAYM
Sbjct: 601 GDILSIPLVIYQRSNKNTCMHQKLQVPRGKCIKKGQILADGAATVGGELALGKNVLVAYM 660
Query: 661 PWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNL 720
PWEGYNSEDAVLIS+RLVYEDIYTSFHIRKYEIQTHVTS GPE++TN+IPHLE HLLRNL
Sbjct: 661 PWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPEKVTNEIPHLEAHLLRNL 720
Query: 721 DKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG 780
DKNG+V+LGSWVE GDILVGKLTPQ+ KESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
Sbjct: 721 DKNGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG 780
Query: 781 GRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMP 840
GRGRVIDVRW+ K+GGS YNPETI +YILQKREIKVGDKVAGRHGNKGI+SKIL RQDMP
Sbjct: 781 GRGRVIDVRWIQKRGGSSYNPETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMP 840
Query: 841 YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLV 900
YLQDGR VDMVFNPLGVPSRMNVGQIFECSLGLAG +LDRHYRIAPFDERYEQEASRKLV
Sbjct: 841 YLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLV 900
Query: 901 FSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHG 960
FSELY+ASKQT+NPW+FEPEYPGKSRIFDGRTG PFEQPVIIG PYILKLIHQVDDKIHG
Sbjct: 901 FSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHG 960
Query: 961 RSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVL 1020
RSSGHYALVTQQPL+GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHI+ARQEVL
Sbjct: 961 RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL 1020
Query: 1021 GTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKE 1069
GTTIIGGTI P DAPESFRLLVRELRSLALELNHFLVSEKNF+I+RKE
Sbjct: 1021 GTTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKE 1069
>gi|11497516 RNA polymerase beta subunit [Spinacia oleracea]
sp|P11703|RPOB_SPIOL DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||C29959 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - spinach
chloroplast
emb|CAB88717.1| (AJ400848) RNA polymerase beta subunit [Spinacia oleracea]
Length = 1070
Score = 1980 bits (5072), Expect = 0.0
Identities = 967/1069 (90%), Positives = 1022/1069 (95%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
ML GNEGMST+PG NQIQFEGF RFID+GLTEEL KFPK+EDTDQEIEFQLFVETYQL
Sbjct: 1 MLRDGNEGMSTIPGFNQIQFEGFWRFIDQGLTEELSKFPKMEDTDQEIEFQLFVETYQLA 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EP IKEKDAVYESLTYSSELYVSAGLIWK + +QEQTI IGNIPLMNSLGT IVNGIYR
Sbjct: 61 EPLIKEKDAVYESLTYSSELYVSAGLIWKTRREMQEQTILIGNIPLMNSLGTFIVNGIYR 120
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQILQSPGIYY+SELDH GISVYTGTIISDWGGR ELEIDRKARIWARVSRKQKISI
Sbjct: 121 IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISI 180
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMGSNL EIL+NVCYPEIFLSFLNDKE+KKIGSKE+AILEFY+QFACVGGDPVF
Sbjct: 181 LVLSSAMGSNLREILDNVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVFS 240
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC++LQKKFFQQRCELG IGRRNMNRRLNLDIP+NNTFLLPRDIL AADHLIGMKF M
Sbjct: 241 ESLCKDLQKKFFQQRCELGRIGRRNMNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGM 300
Query: 301 GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTP 360
GTLDDMNHLK+KRIRSVADLLQDQFGLALVRLEN+VRGTI GAIR+KLIPTPQNLVTSTP
Sbjct: 301 GTLDDMNHLKHKRIRSVADLLQDQFGLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTP 360
Query: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGR 420
LTTT+ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIH SHYGR
Sbjct: 361 LTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR 420
Query: 421 ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIA 480
ICPIDTSEGINVGLIGSLAIHARIG WGS+ESP++EISERSKR+ MLYLSPSRDEYYM+A
Sbjct: 421 ICPIDTSEGINVGLIGSLAIHARIGPWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLA 480
Query: 481 TGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDAN 540
+GN LALNQG QEEQ+VPARYRQEFLTIAWEQVH RSIFSFQYFSIGASLIPFIEHNDAN
Sbjct: 481 SGNSLALNQGIQEEQVVPARYRQEFLTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDAN 540
Query: 541 RALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGS 600
RALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSG LAIAEHEGKIIY +T+KIVL G+
Sbjct: 541 RALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGN 600
Query: 601 GETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYM 660
G T+S+PLV+Y+RSNKNTCMHQK Q+ RGKC+K+GQILADGAATVGGEL+LGKNVLVAYM
Sbjct: 601 GNTVSIPLVMYQRSNKNTCMHQKPQIPRGKCVKKGQILADGAATVGGELALGKNVLVAYM 660
Query: 661 PWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNL 720
PWEGYN EDAVLIS+RLVYEDIYTSFHIRKYEIQT+VTS GPE++T++IPHLE HLLRNL
Sbjct: 661 PWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNL 720
Query: 721 DKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG 780
DKNG+V LGSWVE GDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
Sbjct: 721 DKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG 780
Query: 781 GRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMP 840
GRGRVIDVRW+ KKGGS YNPETIH+YI QKREIKVGDKVAGRHGNKGI+S+IL RQDMP
Sbjct: 781 GRGRVIDVRWIQKKGGSSYNPETIHVYISQKREIKVGDKVAGRHGNKGIISRILLRQDMP 840
Query: 841 YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLV 900
YLQDGRPVDM+FNPLGVPSRMNVGQIFECSLGLAG +LDRHYRIAPFDERYEQEASRKLV
Sbjct: 841 YLQDGRPVDMIFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLV 900
Query: 901 FSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHG 960
FSELY+ASKQT+NPW+FEPEYPGKSRIFDGRTG PFEQPVIIGNPYILKLIHQVDDKIHG
Sbjct: 901 FSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHG 960
Query: 961 RSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVL 1020
RSSGHYALVTQQPL+GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVL
Sbjct: 961 RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVL 1020
Query: 1021 GTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKE 1069
GTTIIGGTI P DAPESFRLLVRELRSLALELNHFLVSE+NF+I+R E
Sbjct: 1021 GTTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSERNFQINRME 1069
>gi|7525025 RNA polymerase beta subunit [Arabidopsis thaliana]
dbj|BAA84377.1| (AP000423) RNA polymerase beta subunit [Arabidopsis thaliana]
Length = 1072
Score = 1931 bits (4948), Expect = 0.0
Identities = 949/1072 (88%), Positives = 1007/1072 (93%), Gaps = 2/1072 (0%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
MLG EG S +PG NQIQFEGF RFID+GL EEL KFPKIED D EIEFQLFVETYQLV
Sbjct: 1 MLGDEKEGTSAIPGFNQIQFEGFYRFIDQGLIEELAKFPKIEDIDHEIEFQLFVETYQLV 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EP IKE+DAVYESLTYSSELYVSAGLIWK S+N+QEQ IFIGNIPLMNSLGTSIVNGIYR
Sbjct: 61 EPLIKERDAVYESLTYSSELYVSAGLIWKTSRNMQEQRIFIGNIPLMNSLGTSIVNGIYR 120
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQILQSPGIYYQSELDH GISVYTGTIISDWGGRLELEID+KARIWARVSRKQKISI
Sbjct: 121 IVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRKQKISI 180
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMG NL EILENVCYPEIFLSFL DKE+KKIGSKE+AILEFY+QF+CVGGDP+F
Sbjct: 181 LVLSSAMGLNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFS 240
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC+ELQKKFF QRCELG IGRRN+N RLNL+IPQNN FLLPRD+L AADHLIGMKF M
Sbjct: 241 ESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDVLAAADHLIGMKFGM 300
Query: 301 GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTP 360
GTLDDMNHLKNKRIRSVADLLQDQ GLAL RLEN+V+GTI GAIR+KLIPTPQNLVTSTP
Sbjct: 301 GTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGTISGAIRHKLIPTPQNLVTSTP 360
Query: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGR 420
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTA+FRIRDIH SHYGR
Sbjct: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGR 420
Query: 421 ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSK--RIHMLYLSPSRDEYYM 478
ICPIDTSEGINVGLIGSL+IHARIG WGS+ESPF+E+ E+SK RI ML+LSPS+DEYYM
Sbjct: 421 ICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELFEKSKKARIRMLFLSPSQDEYYM 480
Query: 479 IATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
IA GN LALN+G QEEQ VPARYRQEFLTIAWE+VHLRSIF FQYFSIGASLIPFIEHND
Sbjct: 481 IAAGNSLALNRGIQEEQAVPARYRQEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHND 540
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLF 598
ANRALMSSNMQRQAVPLS+SEKCIVGTGLERQVALDSG AIAEHEGKI+Y DT KIV
Sbjct: 541 ANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIVFS 600
Query: 599 GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVA 658
G+G+TLS+PL++Y+RSNKNTCMHQK QV+RGKCIK+GQILADGAATVGGEL+LGKN+LVA
Sbjct: 601 GNGDTLSIPLIMYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVA 660
Query: 659 YMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLR 718
YMPWEGYN EDAVLIS+ LVY DIYTSFHIRKYEIQTHVT+ GPERIT +IPHLE LLR
Sbjct: 661 YMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLR 720
Query: 719 NLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 778
NLDKNG+V+LGSWVE GDILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLP
Sbjct: 721 NLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 780
Query: 779 IGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQD 838
IGGRGRVIDVRW+ KKGGS YNPE I +YI QKREIKVGDKVAGRHGNKGI+SKIL RQD
Sbjct: 781 IGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQD 840
Query: 839 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRK 898
MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG +LDRHYRIAPFDERYEQEASRK
Sbjct: 841 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 900
Query: 899 LVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKI 958
LVFSELY+ASKQT+NPW+FEPEYPGKSRIFDGRTG PFEQPVIIG PYILKLIHQVDDKI
Sbjct: 901 LVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI 960
Query: 959 HGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQE 1018
HGRSSGHYALVTQQPL+GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHI+ARQE
Sbjct: 961 HGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQE 1020
Query: 1019 VLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKEV 1070
VLGTTIIGGTI KP DAPESFRLLVRELRSLALELNHFLVSEKNF+I+RKEV
Sbjct: 1021 VLGTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEV 1072
>sp|P46818|RPOB_SINAL DNA-DIRECTED RNA POLYMERASE BETA CHAIN
emb|CAB48411.1| (AJ243754) RNA polymerase A beta subunit [Sinapis alba]
Length = 1078
Score = 1927 bits (4937), Expect = 0.0
Identities = 947/1072 (88%), Positives = 1006/1072 (93%), Gaps = 2/1072 (0%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
MLG G EG ST+PG NQIQFEGF RFID+GL EEL KFPKIED D EIEFQLFVETYQLV
Sbjct: 7 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDIDHEIEFQLFVETYQLV 66
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EP IKE+DAVYESLTYSSELYVSAGLIWK ++N+QEQ IFIGNIPLMNSLGTSIVNGIYR
Sbjct: 67 EPLIKERDAVYESLTYSSELYVSAGLIWKTNRNMQEQRIFIGNIPLMNSLGTSIVNGIYR 126
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
+VINQILQSPGIYYQSELDH GISVYTGTIISDWGGRLELEID+KARIWARVSRKQKISI
Sbjct: 127 VVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRKQKISI 186
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMGSNL EILENVCYPEIFLSFL DKE+KKIGSKE+AILEFY+QF+CVGGDP+F
Sbjct: 187 LVLSSAMGSNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFS 246
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC+ELQKKFF QRCELG IGRRN+N RLNL+IPQNN FLLPRDIL AADHLIGMKF M
Sbjct: 247 ESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGM 306
Query: 301 GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTP 360
GTLDDMNHLKNKRIRSVADLLQDQ GLAL RLEN+V+GTI GAIR+KLIP QNLVTSTP
Sbjct: 307 GTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGTIGGAIRHKLIPPTQNLVTSTP 366
Query: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGR 420
LTTTYESFFG HPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTA+FRIRDIH SHYGR
Sbjct: 367 LTTTYESFFGFHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGR 426
Query: 421 ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKR--IHMLYLSPSRDEYYM 478
ICPIDTSEGINVGLIGSL+IHARIG WGS+ESPF+E+ E+SK+ I ML+LSPS+DEYYM
Sbjct: 427 ICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELVEKSKKAQIRMLFLSPSQDEYYM 486
Query: 479 IATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
IA GN LALN+G QEEQ+VPARYRQEFLTIAWE+VHLRSIF FQYFSIGASLIPFIEHND
Sbjct: 487 IAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHND 546
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLF 598
ANRALMSSNMQRQAVPLS+SEKCIVGTGLERQVALDSG AIAEHEGKI+Y DT KI+L
Sbjct: 547 ANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIILS 606
Query: 599 GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVA 658
G+ TLS+PL++Y+RSNKNTCMHQK QV RGKCIK+GQILADGAATVGGEL+LGKNVLVA
Sbjct: 607 GNENTLSIPLIMYQRSNKNTCMHQKPQVPRGKCIKKGQILADGAATVGGELALGKNVLVA 666
Query: 659 YMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLR 718
YMPWEGYN EDAVLIS+ LVY DIYTSFHIRKYEIQTHVT+ GPERIT +IPHLE LLR
Sbjct: 667 YMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLR 726
Query: 719 NLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 778
NLDKNG+V+LGSWVE GDILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLP
Sbjct: 727 NLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 786
Query: 779 IGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQD 838
IGGRGRVIDVRW+ KKGGS YNPE I +YI QKREIKVGDKVAGRHGNKGI+SKIL RQD
Sbjct: 787 IGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQD 846
Query: 839 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRK 898
MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG +LDRHYRIAPFDERYEQEASRK
Sbjct: 847 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 906
Query: 899 LVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKI 958
LVFSELY+ASKQT+NPW+FEPEYPGKSRIFDGRTG PFEQPVIIG PYILKLIHQVDDKI
Sbjct: 907 LVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI 966
Query: 959 HGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQE 1018
HGRSSGHYALVTQQPL+GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHI+ARQE
Sbjct: 967 HGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQE 1026
Query: 1019 VLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKEV 1070
VLGTTIIGGTI KP DAPESFRLLVRELRSLALELNHFLVSEKNF+I+RKEV
Sbjct: 1027 VLGTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEV 1078
>pir||S48842 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - white mustard
chloroplast
emb|CAA57814.1| (X82417) RNA polymerase subunit beta [Sinapis alba]
Length = 1078
Score = 1927 bits (4937), Expect = 0.0
Identities = 947/1072 (88%), Positives = 1006/1072 (93%), Gaps = 2/1072 (0%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
MLG G EG ST+PG NQIQFEGF RFID+GL EEL KFPKIED D EIEFQLFVETYQLV
Sbjct: 7 MLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDIDHEIEFQLFVETYQLV 66
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EP IKE+DAVYESLTYSSELYVSAGLIWK ++N+QEQ IFIGNIPLMNSLGTSIVNGIYR
Sbjct: 67 EPLIKERDAVYESLTYSSELYVSAGLIWKTNRNMQEQRIFIGNIPLMNSLGTSIVNGIYR 126
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
+VINQILQSPGIYYQSELDH GISVYTGTIISDWGGRLELEID+KARIWARVSRKQKISI
Sbjct: 127 VVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRKQKISI 186
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMGSNL EILENVCYPEIFLSFL DKE+KKIGSKE+AILEFY+QF+CVGGDP+F
Sbjct: 187 LVLSSAMGSNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFS 246
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC+ELQKKFF QRCELG IGRRN+N RLNL+IPQNN FLLPRDIL AADHLIGMKF M
Sbjct: 247 ESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGM 306
Query: 301 GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTP 360
GTLDDMNHLKNKRIRSVADLLQDQ GLAL RLEN+V+GTI GAIR+KLIP QNLVTSTP
Sbjct: 307 GTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGTIGGAIRHKLIPPTQNLVTSTP 366
Query: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGR 420
LTTTYESFFG HPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTA+FRIRDIH SHYGR
Sbjct: 367 LTTTYESFFGFHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGR 426
Query: 421 ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKR--IHMLYLSPSRDEYYM 478
ICPIDTSEGINVGLIGSL+IHARIG WGS+ESPF+E+ E+SK+ I ML+LSPS+DEYYM
Sbjct: 427 ICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELVEKSKKAQIRMLFLSPSQDEYYM 486
Query: 479 IATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
IA GN LALN+G QEEQ+VPARYRQEFLTIAWE+VHLRSIF FQYFSIGASLIPFIEHND
Sbjct: 487 IAAGNSLALNRGIQEEQVVPARYRQEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHND 546
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLF 598
ANRALMSSNMQRQAVPLS+SEKCIVGTGLERQVALDSG AIAEHEGKI+Y DT KI+L
Sbjct: 547 ANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIILS 606
Query: 599 GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVA 658
G+ TLS+PL++Y+RSNKNTCMHQK QV RGKCIK+GQILADGAATVGGEL+LGKNVLVA
Sbjct: 607 GNENTLSIPLIMYQRSNKNTCMHQKPQVPRGKCIKKGQILADGAATVGGELALGKNVLVA 666
Query: 659 YMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLR 718
YMPWEGYN EDAVLIS+ LVY DIYTSFHIRKYEIQTHVT+ GPERIT +IPHLE LLR
Sbjct: 667 YMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLR 726
Query: 719 NLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 778
NLDKNG+V+LGSWVE GDILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLP
Sbjct: 727 NLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 786
Query: 779 IGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQD 838
IGGRGRVIDVRW+ KKGGS YNPE I +YI QKREIKVGDKVAGRHGNKGI+SKIL RQD
Sbjct: 787 IGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQD 846
Query: 839 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRK 898
MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG +LDRHYRIAPFDERYEQEASRK
Sbjct: 847 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 906
Query: 899 LVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKI 958
LVFSELY+ASKQT+NPW+FEPEYPGKSRIFDGRTG PFEQPVIIG PYILKLIHQVDDKI
Sbjct: 907 LVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI 966
Query: 959 HGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQE 1018
HGRSSGHYALVTQQPL+GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHI+ARQE
Sbjct: 967 HGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQE 1026
Query: 1019 VLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKEV 1070
VLGTTIIGGTI KP DAPESFRLLVRELRSLALELNHFLVSEKNF+I+RKEV
Sbjct: 1027 VLGTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEV 1078
>emb|CAB67151.1| (AJ271079) RNA polymerase beta subunit [Oenothera elata subsp.
hookeri]
Length = 1072
Score = 1925 bits (4932), Expect = 0.0
Identities = 942/1071 (87%), Positives = 1013/1071 (93%), Gaps = 2/1071 (0%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIED-TDQEIEFQLFVETYQL 59
MLG GN GM T+PG NQIQFEGFCRFID+GLTEEL KFPKIED TDQEIEFQLFVETY L
Sbjct: 1 MLGDGNGGMCTIPGFNQIQFEGFCRFIDQGLTEELSKFPKIEDDTDQEIEFQLFVETYHL 60
Query: 60 VEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIY 119
VEP IKE+DAVYE LTYSSELY+SAGLIWK+S+++Q+QTIFIGNIPLMNSLGTSIVNGIY
Sbjct: 61 VEPLIKERDAVYELLTYSSELYISAGLIWKSSRDMQKQTIFIGNIPLMNSLGTSIVNGIY 120
Query: 120 RIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKIS 179
RIVINQILQSPGIYY+SELDH GISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKIS
Sbjct: 121 RIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKIS 180
Query: 180 ILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVF 239
ILVLSSAMGSNL EILENVCYPE+FLSFLN+KE+K IGSKE+AILEFY+QF+CVGGDPVF
Sbjct: 181 ILVLSSAMGSNLREILENVCYPEMFLSFLNEKEKKTIGSKENAILEFYQQFSCVGGDPVF 240
Query: 240 PESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFR 299
ESLC+EL KFFQQRCELG IGR+NMNRRLNLDIPQ+NTFLLPRDIL AADHLIGMKF
Sbjct: 241 SESLCKELHTKFFQQRCELGRIGRQNMNRRLNLDIPQHNTFLLPRDILAAADHLIGMKFG 300
Query: 300 MGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTST 359
MGTLDD NHLKNKRIRSVADLLQDQFGLALVRLE++VR TICGAIR+KLIPTP NLVTST
Sbjct: 301 MGTLDDTNHLKNKRIRSVADLLQDQFGLALVRLESVVRRTICGAIRHKLIPTPHNLVTST 360
Query: 360 PLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYG 419
PLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLT RTASFR+RDIH S+YG
Sbjct: 361 PLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTARTASFRMRDIHPSYYG 420
Query: 420 RICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMI 479
RICPIDTSEGINVGLIGSLAIHARIGR GS+ESPF+EISERS + MLY SPSRDEYYM+
Sbjct: 421 RICPIDTSEGINVGLIGSLAIHARIGRGGSLESPFYEISERSNKGRMLYFSPSRDEYYMV 480
Query: 480 ATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDA 539
A GN LALN+G QEEQ+VPARYRQEFLT+AW+QVHLRSIF FQYFSIGASLIPFIEHNDA
Sbjct: 481 AAGNSLALNRGIQEEQVVPARYRQEFLTLAWDQVHLRSIFPFQYFSIGASLIPFIEHNDA 540
Query: 540 NRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFG 599
NRALMSSNMQRQAVPLSQSE+CIVGTGLERQ +LDSG AIAE EGKIIY +++KI+L G
Sbjct: 541 NRALMSSNMQRQAVPLSQSERCIVGTGLERQASLDSGVTAIAEREGKIIYTNSDKIILSG 600
Query: 600 SGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAY 659
SG+TLS+PLV+Y+RSNKNT MHQK QV RGKCIK+GQILADGAATVGGEL+LGKNVLVAY
Sbjct: 601 SGDTLSIPLVMYQRSNKNTWMHQKPQVPRGKCIKKGQILADGAATVGGELALGKNVLVAY 660
Query: 660 MPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRN 719
MPWEGYN EDAVLIS+RLVYEDIYTSFHIRKYE+QTHV S GPERITN+IPHLE HLLRN
Sbjct: 661 MPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEMQTHVPSQGPERITNEIPHLEAHLLRN 720
Query: 720 LDKNGLVILGSWVEAGDILVGKLTPQMA-KESSYAPEDRLLRAILGIQVSTSKETCLKLP 778
LDKNG+V++GSWV+ G+ILVGKLTPQMA +ESSYAPE+RLLRAILGIQ+STSKETCLKLP
Sbjct: 721 LDKNGIVMMGSWVKTGEILVGKLTPQMAEEESSYAPEERLLRAILGIQISTSKETCLKLP 780
Query: 779 IGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQD 838
IGGRGRVIDVRW+ K+GGS YNPETI +YILQKREIKVGDKVAGRHGNKGI+SKIL RQD
Sbjct: 781 IGGRGRVIDVRWIQKRGGSSYNPETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQD 840
Query: 839 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRK 898
MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLG AGD+L+RHYRIAPFDERYEQEASRK
Sbjct: 841 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGFAGDLLERHYRIAPFDERYEQEASRK 900
Query: 899 LVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKI 958
LVFSELY+ASKQT+NPW+FEPEYPGKSR+FDGRTG PFEQPVIIG PYILKLIHQVDDKI
Sbjct: 901 LVFSELYEASKQTANPWVFEPEYPGKSRLFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI 960
Query: 959 HGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQE 1018
HGRSSGHYA VTQQPL+GRAKQGGQRVGEMEVWALEGFGVAH+LQEMLTYKSDHI+ARQ
Sbjct: 961 HGRSSGHYARVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHLLQEMLTYKSDHIRARQG 1020
Query: 1019 VLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKE 1069
VLGTTI+GGTI KP DAPESFRLLVRELRSLALELNHFLVSEKNF+I+RKE
Sbjct: 1021 VLGTTILGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKE 1071
>sp|P50546|RPOB_ARATH DNA-DIRECTED RNA POLYMERASE BETA CHAIN
Length = 1072
Score = 1924 bits (4928), Expect = 0.0
Identities = 948/1072 (88%), Positives = 1005/1072 (93%), Gaps = 2/1072 (0%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
MLG EG S +PG NQIQFEGF RFID+GL EEL KFPKIED D EIEFQLFVETYQLV
Sbjct: 1 MLGDEKEGTSAIPGFNQIQFEGFYRFIDQGLIEELAKFPKIEDIDHEIEFQLFVETYQLV 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EP IKE+DAVYESLTYSSELYVSAGLIWK S+N+QEQ IFIGNIPLMNSLGTSIVNGIYR
Sbjct: 61 EPLIKERDAVYESLTYSSELYVSAGLIWKTSRNMQEQRIFIGNIPLMNSLGTSIVNGIYR 120
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQILQSPGIYYQSELDH GISVYTGTIISDWGGRLELEID+KARIWARVSRKQKISI
Sbjct: 121 IVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRKQKISI 180
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMG NL EILENVCYPEIFLSFL DKE+KKIGSKE+AILEFY+QF+CVGGDP+F
Sbjct: 181 LVLSSAMGLNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFS 240
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC+ELQKKFF QRCELG IGRRN+N RLNL+IPQNN FLLPRDIL AADHLIGMKF M
Sbjct: 241 ESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGM 300
Query: 301 GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTP 360
GTLDDMNHLKNKRIRSVADLLQDQ GLAL RLEN+V+GTI GAIRYKLIPTPQNLVTSTP
Sbjct: 301 GTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGTIGGAIRYKLIPTPQNLVTSTP 360
Query: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGR 420
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTA+FRIRDIH SHYGR
Sbjct: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGR 420
Query: 421 ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSK--RIHMLYLSPSRDEYYM 478
ICPIDTSEGINVGLIGSL+IHARIG WGS+ESPF+E+ E+SK RI ML+LSPS+DEYYM
Sbjct: 421 ICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELFEKSKKARIRMLFLSPSQDEYYM 480
Query: 479 IATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
IA GN LALN+G QEEQ VPARYRQEFLTIAWE+VHLRSIF FQYFSIGASLIPFIEHND
Sbjct: 481 IAAGNSLALNRGIQEEQAVPARYRQEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHND 540
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLF 598
ANRALMSSNMQRQAVPLS+SEKCIVGTGLERQVALDSG AIAEHEGKI+Y DT KIVL
Sbjct: 541 ANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIVLS 600
Query: 599 GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVA 658
G+G+TLS+PL++Y+RSNKNTCMHQK QV+RGKCIK+GQILADGAATVGGEL+LGKN+LVA
Sbjct: 601 GNGDTLSIPLIMYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVA 660
Query: 659 YMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLR 718
YMPWEGYN EDAVLIS+ LVY DIYTSFHIRKYEIQTHVT+ GPERIT +IPHLE LLR
Sbjct: 661 YMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLR 720
Query: 719 NLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 778
NLDKNG+V+LGSWVE GDILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLP
Sbjct: 721 NLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 780
Query: 779 IGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQD 838
IGGRGRVIDVRW+ KKGGS YNPE I +YI QKREIKVGDKVAGRHGNKGI+SKIL RQD
Sbjct: 781 IGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQD 840
Query: 839 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRK 898
MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG +LDRHYRIAPFDERYEQEASRK
Sbjct: 841 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 900
Query: 899 LVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKI 958
LVFSELY+ASKQT+NPW+FEPEYPGK+RIFDGRTG PFEQPVIIG PYILKLIHQVD I
Sbjct: 901 LVFSELYEASKQTANPWVFEPEYPGKTRIFDGRTGDPFEQPVIIGKPYILKLIHQVDVII 960
Query: 959 HGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQE 1018
HGRSSGHYALVTQQPL+GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHI+ARQE
Sbjct: 961 HGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQE 1020
Query: 1019 VLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKEV 1070
VLGTTIIGGTI KP DA ESFRLLVRELRSLALELNHFLVSEKNF+I+RKEV
Sbjct: 1021 VLGTTIIGGTIPKPEDAQESFRLLVRELRSLALELNHFLVSEKNFQINRKEV 1072
>emb|CAA74024.1| (Y13690) DNA-dependent RNA polymerase subunit beta [Arabidopsis
thaliana]
Length = 1078
Score = 1924 bits (4928), Expect = 0.0
Identities = 948/1072 (88%), Positives = 1005/1072 (93%), Gaps = 2/1072 (0%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
MLG EG S +PG NQIQFEGF RFID+GL EEL KFPKIED D EIEFQLFVETYQLV
Sbjct: 7 MLGDEKEGTSAIPGFNQIQFEGFYRFIDQGLIEELAKFPKIEDIDHEIEFQLFVETYQLV 66
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EP IKE+DAVYESLTYSSELYVSAGLIWK S+N+QEQ IFIGNIPLMNSLGTSIVNGIYR
Sbjct: 67 EPLIKERDAVYESLTYSSELYVSAGLIWKTSRNMQEQRIFIGNIPLMNSLGTSIVNGIYR 126
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQILQSPGIYYQSELDH GISVYTGTIISDWGGRLELEID+KARIWARVSRKQKISI
Sbjct: 127 IVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRKQKISI 186
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMG NL EILENVCYPEIFLSFL DKE+KKIGSKE+AILEFY+QF+CVGGDP+F
Sbjct: 187 LVLSSAMGLNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFS 246
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC+ELQKKFF QRCELG IGRRN+N RLNL+IPQNN FLLPRDIL AADHLIGMKF M
Sbjct: 247 ESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGM 306
Query: 301 GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTP 360
GTLDDMNHLKNKRIRSVADLLQDQ GLAL RLEN+V+GTI GAIRYKLIPTPQNLVTSTP
Sbjct: 307 GTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGTIGGAIRYKLIPTPQNLVTSTP 366
Query: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGR 420
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTA+FRIRDIH SHYGR
Sbjct: 367 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGR 426
Query: 421 ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSK--RIHMLYLSPSRDEYYM 478
ICPIDTSEGINVGLIGSL+IHARIG WGS+ESPF+E+ E+SK RI ML+LSPS+DEYYM
Sbjct: 427 ICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELFEKSKKARIRMLFLSPSQDEYYM 486
Query: 479 IATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
IA GN LALN+G QEEQ VPARYRQEFLTIAWE+VHLRSIF FQYFSIGASLIPFIEHND
Sbjct: 487 IAAGNSLALNRGIQEEQAVPARYRQEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHND 546
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLF 598
ANRALMSSNMQRQAVPLS+SEKCIVGTGLERQVALDSG AIAEHEGKI+Y DT KIVL
Sbjct: 547 ANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIVLS 606
Query: 599 GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVA 658
G+G+TLS+PL++Y+RSNKNTCMHQK QV+RGKCIK+GQILADGAATVGGEL+LGKN+LVA
Sbjct: 607 GNGDTLSIPLIMYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVA 666
Query: 659 YMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLR 718
YMPWEGYN EDAVLIS+ LVY DIYTSFHIRKYEIQTHVT+ GPERIT +IPHLE LLR
Sbjct: 667 YMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLR 726
Query: 719 NLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 778
NLDKNG+V+LGSWVE GDILVGKLTPQ+AKESSYAPEDRLLRAILGIQVSTSKETCLKLP
Sbjct: 727 NLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 786
Query: 779 IGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQD 838
IGGRGRVIDVRW+ KKGGS YNPE I +YI QKREIKVGDKVAGRHGNKGI+SKIL RQD
Sbjct: 787 IGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQD 846
Query: 839 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRK 898
MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG +LDRHYRIAPFDERYEQEASRK
Sbjct: 847 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 906
Query: 899 LVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKI 958
LVFSELY+ASKQT+NPW+FEPEYPGK+RIFDGRTG PFEQPVIIG PYILKLIHQVD I
Sbjct: 907 LVFSELYEASKQTANPWVFEPEYPGKTRIFDGRTGDPFEQPVIIGKPYILKLIHQVDVII 966
Query: 959 HGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQE 1018
HGRSSGHYALVTQQPL+GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHI+ARQE
Sbjct: 967 HGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQE 1026
Query: 1019 VLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKEV 1070
VLGTTIIGGTI KP DA ESFRLLVRELRSLALELNHFLVSEKNF+I+RKEV
Sbjct: 1027 VLGTTIIGGTIPKPEDAQESFRLLVRELRSLALELNHFLVSEKNFQINRKEV 1078
>prf||1211235T RNA polymerase beta [Nicotiana tabacum]
Length = 1000
Score = 1865 bits (4778), Expect = 0.0
Identities = 906/1000 (90%), Positives = 956/1000 (95%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
MLG GNEG+ST+PG NQIQFEGFCRFID+GLTEEL+KFPKIEDTDQEIEFQLFVETYQLV
Sbjct: 1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLV 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EP IKE+DAVYESLTYSSELYVSAGLIWKNS+++QEQTIFIGNIPLMNSLGTSIVNGIYR
Sbjct: 61 EPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYR 120
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQILQSPGIYY+SELDH GISVYTGTIISDWGGR ELEIDRKARIWARVSRKQKISI
Sbjct: 121 IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISI 180
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMG NL EILENVCYPEIFLSFL+DKE KKIGSKE+AILEFY+QFACVGGDPVF
Sbjct: 181 LVLSSAMGLNLREILENVCYPEIFLSFLSDKERKKIGSKENAILEFYQQFACVGGDPVFS 240
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC+ELQKKFFQQRCELG IGRRNMNRRLNLDIPQNNTFLLPRDIL AADHLIG+KF M
Sbjct: 241 ESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFGM 300
Query: 301 GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTP 360
G LDDMNHLKNKRIRSVADLLQDQFGLALVRLEN+VRGTICGAIR+KLIPTPQNLVTSTP
Sbjct: 301 GALDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTP 360
Query: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGR 420
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIH SHYGR
Sbjct: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR 420
Query: 421 ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIA 480
ICPIDTSEGINVGLIGSLAIHARIG WGS+ESPF+EISERS + MLYLSP RDEYYM+A
Sbjct: 421 ICPIDTSEGINVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLYLSPGRDEYYMVA 480
Query: 481 TGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDAN 540
GN LALNQ QEEQ+VPARYRQEFLTIAWEQVHLRSIF FQYFSIGASLIPFIEHNDAN
Sbjct: 481 AGNSLALNQDIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN 540
Query: 541 RALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGS 600
RALMSSNMQRQAVPLS+SEKCIVGTGLERQ ALDSG LAIAE EG+++Y +T+KI+L G+
Sbjct: 541 RALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGALAIAEREGRVVYTNTDKILLAGN 600
Query: 601 GETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYM 660
G+ LS+PLVIY+RSNKNTCMHQK QV RGKCIK+GQILADGAATVGGEL+LGKNVLVAYM
Sbjct: 601 GDILSIPLVIYQRSNKNTCMHQKLQVPRGKCIKKGQILADGAATVGGELALGKNVLVAYM 660
Query: 661 PWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNL 720
PWEGYNSEDAVLIS+RLVYEDIYTSFHIRKYEIQTHVTS GPE++TN+IPHLE HLLRNL
Sbjct: 661 PWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPEKVTNEIPHLEAHLLRNL 720
Query: 721 DKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG 780
DKNG+V+LGSWVE GDILVGKLTPQ+ KESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
Sbjct: 721 DKNGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG 780
Query: 781 GRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMP 840
GRGRVIDVRW+ K+GGS YNPETI +YILQKREIKVGDKVAGRHGNKGI+SKIL RQDMP
Sbjct: 781 GRGRVIDVRWIQKRGGSSYNPETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMP 840
Query: 841 YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLV 900
YLQDGR VDMVFNPLGVPSRMNVGQIFECSLGLAG +LDRHYRIAPFDERYEQEASRKLV
Sbjct: 841 YLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLV 900
Query: 901 FSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHG 960
FSELY+ASKQT+NPW+FEPEYPGKSRIFDGRTG PFEQPVIIG PYILKLIHQVDDKIHG
Sbjct: 901 FSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHG 960
Query: 961 RSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAH 1000
RSSGHYALVTQQPL+GRAKQGGQRVGEMEVWALEGFGVAH
Sbjct: 961 RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAH 1000
>gi|11466777 RNA polymerase beta subunit [Oryza sativa]
sp|P12091|RPOB_ORYSA DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||RNRZB DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - rice
chloroplast
emb|CAA33986.1| (X15901) RNA polymerase beta subunit [Oryza sativa]
Length = 1075
Score = 1680 bits (4304), Expect = 0.0
Identities = 849/1083 (78%), Positives = 942/1083 (86%), Gaps = 21/1083 (1%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
ML GNEGMST+PG +QIQFEGFCRFI++GL EEL KFP I+D D EI FQLF + YQL+
Sbjct: 1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEISFQLFAKGYQLL 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EPSIKE+DAVYESLTYSSELYVSA LI+ ++Q+QTI IGNIP+MNSLGT I+NGIYR
Sbjct: 61 EPSIKERDAVYESLTYSSELYVSARLIF--GFDVQKQTISIGNIPIMNSLGTFIINGIYR 118
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQIL SPGIYY+SELDHKGIS+YTGTIISDWGGR EL ID+K RIWARVSRKQKISI
Sbjct: 119 IVINQILLSPGIYYRSELDHKGISIYTGTIISDWGGRSELAIDKKERIWARVSRKQKISI 178
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMGSNL EIL+NV YPEIFLSF N KE+K+I SKE AILEFY+QFACVGGD VF
Sbjct: 179 LVLSSAMGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFS 238
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC ELQKKFFQQ+CELG IGRRNMNRRLNLDIPQN+TFLLPRD+L A DHLIGMKF
Sbjct: 239 ESLCEELQKKFFQQKCELGRIGRRNMNRRLNLDIPQNSTFLLPRDVLAATDHLIGMKFET 298
Query: 301 GTLDD--MNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTS 358
G LDD MNHLKNKRIRSVADLLQDQFGLAL RL++ V+ TI + PTPQ LVT
Sbjct: 299 GILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTP 358
Query: 359 TP----LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIH 414
T L TTYE+FFG +PLSQV D+TNPLTQ VHGRK+S LGPGGLTGRTASFR RDIH
Sbjct: 359 TSTSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIH 418
Query: 415 SSHYGRICPIDTSEGINVGLIGSLAIHARIGRW-GSIESPFFEISERSKRI---HMLYLS 470
SHYGRICPIDTSEGINVGL GSLAIHARI W GS+ESPF+EISE++K+ ++YLS
Sbjct: 419 PSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEKAKKKKERQVVYLS 478
Query: 471 PSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASL 530
P+RDEYYMIA GN L+LN+G QEEQ+VPARYRQEFLTIAWEQ+H+RSIF FQYFSIG SL
Sbjct: 479 PNRDEYYMIAAGNSLSLNRGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGSL 538
Query: 531 IPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYK 590
IPFIEHNDANRALMSSNMQRQAVPLS+SEKCIVGTGLERQ ALDS IAE EGKII
Sbjct: 539 IPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVSVIAEREGKIIST 598
Query: 591 DTNKIVLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELS 650
+++KI+L SG+T+S+PLV +RRSNKNTCMHQK +V RGK IK+GQILA+GAATVGGEL+
Sbjct: 599 NSHKILLSSSGKTISIPLVTHRRSNKNTCMHQKPRVPRGKSIKKGQILAEGAATVGGELA 658
Query: 651 LGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGP-ERITNKI 709
LGKNVLVAYMPWEGYN EDAVLIS+RLVYEDIYTSFHIRKYEIQT TS G E+IT +I
Sbjct: 659 LGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKITKEI 718
Query: 710 PHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVST 769
PHLE HLLRNLD+NG+V LGSWVE GDILVGKLTPQ+A ESSY E LLRAI G++VST
Sbjct: 719 PHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVST 778
Query: 770 SKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETI--HIYILQKREIKVGDKVAGRHGNK 827
SKET LKLPIGGRGRVIDV+W+ + +P I +YILQKREIKVGDKVAGRHGNK
Sbjct: 779 SKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNK 832
Query: 828 GIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPF 887
GI+SKIL RQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAGD+L +HYRIAPF
Sbjct: 833 GIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPF 892
Query: 888 DERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYI 947
DERYEQEASRKLVFSELY+ASKQT NPW+FEPEYPGKSRIFDGRTG PFEQPV+IG YI
Sbjct: 893 DERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYI 952
Query: 948 LKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLT 1007
LKLIHQVD+KIHGRS+G Y+LVTQQP++GRAKQGGQR+GEMEVWALEGFGVAHILQE+LT
Sbjct: 953 LKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEILT 1012
Query: 1008 YKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHR 1067
YKSDH+ ARQE+L TI G + D PESFR+LVRELRSLALELNHFLVS+KNF+++R
Sbjct: 1013 YKSDHLIARQEILNATIWGKRVPNHEDPPESFRVLVRELRSLALELNHFLVSQKNFQVNR 1072
Query: 1068 KEV 1070
+EV
Sbjct: 1073 EEV 1075
>dbj|BAA78040.1| (AB027572) RNA polymerase subunit beta [Triticum aestivum]
Length = 1076
Score = 1678 bits (4299), Expect = 0.0
Identities = 853/1084 (78%), Positives = 938/1084 (85%), Gaps = 22/1084 (2%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
ML GNEGMST+PG +QIQFEGFCRFI++ L EEL KFP I+D D EI FQLF + YQL+
Sbjct: 1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQALAEELDKFPTIKDPDHEIAFQLFAKGYQLL 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EPSIKE+DAVYESLTYSSELYVSA LI+ ++Q+QTI IGNIP+MNSLGT I+NGIYR
Sbjct: 61 EPSIKERDAVYESLTYSSELYVSARLIF--GFDVQKQTISIGNIPIMNSLGTFIINGIYR 118
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQIL SPGIYY+SELDHKGIS+YTGTIISDWGGR EL ID+K RIWARVSRKQKISI
Sbjct: 119 IVINQILLSPGIYYRSELDHKGISIYTGTIISDWGGRSELAIDKKERIWARVSRKQKISI 178
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMGSNL EIL+NV YPEIFLSF N KE+K+I SKE AILEFY+QFACVGGD VF
Sbjct: 179 LVLSSAMGSNLREILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFS 238
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC ELQKKFFQQ+CELG IGRRNMNRRLNLDIPQNNTFLLPRD+L A DHLIGMKF
Sbjct: 239 ESLCEELQKKFFQQKCELGRIGRRNMNRRLNLDIPQNNTFLLPRDVLAATDHLIGMKFGT 298
Query: 301 GTLDD--MNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTS 358
G LDD MNHLKNKRIRSVADLLQDQFGLAL RL++ V+ TI + PTPQ LVT
Sbjct: 299 GILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTP 358
Query: 359 TP----LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIH 414
T L TTYE+FFG +PLSQV D+TNPLTQ VHGRK+S LGPGGLTGRTASFR RDIH
Sbjct: 359 TSTSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIH 418
Query: 415 SSHYGRICPIDTSEGINVGLIGSLAIHARIGR-WGSIESPFFEIS----ERSKRIHMLYL 469
SHYGRICPIDTSEGINVGL GSLAIHARI WGSIESPF+EIS + K ++YL
Sbjct: 419 PSHYGRICPIDTSEGINVGLTGSLAIHARIDHLWGSIESPFYEISAEKAKEKKERQVVYL 478
Query: 470 SPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
SP+RDEYYMIA GN L+LNQG QEEQ+VPARYRQEFLTIAWEQ+H+RSIF FQYFSIG S
Sbjct: 479 SPNRDEYYMIAAGNSLSLNQGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGS 538
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIY 589
LIPFIEHNDANRALMSSNMQRQAVPLS+SEKCIVGTGLERQ ALDS IAE EGKII
Sbjct: 539 LIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVSIIAEREGKIIS 598
Query: 590 KDTNKIVLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGEL 649
D++KI+L SG+T+S+PLV +RRSNKNTCMHQK +V RGK IK+GQILA+GAATVGGEL
Sbjct: 599 TDSHKILLSSSGKTISIPLVNHRRSNKNTCMHQKPRVPRGKSIKKGQILAEGAATVGGEL 658
Query: 650 SLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGP-ERITNK 708
+LGKNVLVAYMPWEGYN EDAVLIS+RLVYEDIYTSFHIRKYEIQT TS G E+IT +
Sbjct: 659 ALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKITKE 718
Query: 709 IPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVS 768
IPHLE HLLRNLD+NG+V LGSWVE GDILVGKLTPQ+A ESSY E LLRAI G++VS
Sbjct: 719 IPHLEEHLLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVS 778
Query: 769 TSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETI--HIYILQKREIKVGDKVAGRHGN 826
TSKET LKLPIGGRGRVIDV+W+ + +P I +YILQKREIKVGDKVAGRHGN
Sbjct: 779 TSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGN 832
Query: 827 KGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAP 886
KGI+SKIL RQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAGD+L +HYRIAP
Sbjct: 833 KGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAP 892
Query: 887 FDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPY 946
FDERYEQEASRKLVFSELY+ASK+T NPW+FEPEYPGKSRIFDGRTG PFEQPV+IG Y
Sbjct: 893 FDERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSY 952
Query: 947 ILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEML 1006
ILKLIHQVD+KIHGRS+G Y+LVTQQP++GRAKQGGQRVGEMEVWALEGFGVAHILQE+L
Sbjct: 953 ILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRVGEMEVWALEGFGVAHILQEIL 1012
Query: 1007 TYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIH 1066
TYKSDH+ ARQE+L TI G I D PESFR+LVRELRSLALELNHFLVSEKNF+++
Sbjct: 1013 TYKSDHLIARQEILNATIWGKRIPNHEDPPESFRVLVRELRSLALELNHFLVSEKNFQVN 1072
Query: 1067 RKEV 1070
R+EV
Sbjct: 1073 REEV 1076
>gi|11467182 RNA polymerase beta subunit [Zea mays]
sp|P16023|RPOB_MAIZE DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||RNZMB DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - maize
chloroplast
emb|CAA35195.1| (X17318) RNA polymerase beta subunit (AA 1-1075) [Zea mays]
emb|CAA60276.1| (X86563) RNA polymerase beta subunit [Zea mays]
Length = 1075
Score = 1678 bits (4298), Expect = 0.0
Identities = 846/1081 (78%), Positives = 939/1081 (86%), Gaps = 17/1081 (1%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
ML GNEGMST+PG +QIQFEGFCRFI++GL EEL KFP I+D D EI FQLF + YQL+
Sbjct: 1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEIAFQLFAKGYQLL 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EPSIKE++AVYESLTYSSELYVSA LI+ ++Q++TI IGNIP+MNSLGT I+NGIYR
Sbjct: 61 EPSIKERNAVYESLTYSSELYVSARLIF--GFDVQKETISIGNIPIMNSLGTFIINGIYR 118
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQIL SPGIYY+SELDHKGIS+YTGTIISDWGGR EL ID+K RIWARVSRKQKISI
Sbjct: 119 IVINQILLSPGIYYRSELDHKGISIYTGTIISDWGGRSELAIDKKERIWARVSRKQKISI 178
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMGSNL EIL+NV YPEIFLSF N KE+K+I SKE AILEFY+QFACVGGD VF
Sbjct: 179 LVLSSAMGSNLREILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFS 238
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC ELQKKFFQQ+CELG +GRRNMNRRLNLDIPQNNTFLLPRD+L A DHLIGMKF
Sbjct: 239 ESLCEELQKKFFQQKCELGRVGRRNMNRRLNLDIPQNNTFLLPRDVLAATDHLIGMKFGT 298
Query: 301 GTLDD--MNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTS 358
G LDD MNHLKNKRIRSVADLLQDQFGLAL RL++ V+ TI + PTPQ LVT
Sbjct: 299 GILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTP 358
Query: 359 TP----LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIH 414
T L TTYE+FFG +PL+QV D+TNPLTQ VHGRK+S LGPGGLTGRTASFR RDIH
Sbjct: 359 TSTSILLITTYETFFGTYPLAQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIH 418
Query: 415 SSHYGRICPIDTSEGINVGLIGSLAIHARIGRW-GSIESPFFEISERSKRI---HMLYLS 470
SHYGRICPIDTSEGINVGL GSLAIHARI W GSIESPF+EISE++K ++YLS
Sbjct: 419 PSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSIESPFYEISEKAKEKKERQVVYLS 478
Query: 471 PSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASL 530
P+RDEYYMIA GN L+LNQG QEEQ+VPARYRQEFLTIAWEQ+H+RSIF FQYFSIG SL
Sbjct: 479 PNRDEYYMIAAGNSLSLNQGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGSL 538
Query: 531 IPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYK 590
IPFIEHNDANRALMSSNMQRQAVPLS+SEKCIVGTGLERQ ALDS IA+ EGKII
Sbjct: 539 IPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVSVIAQREGKIISS 598
Query: 591 DTNKIVLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELS 650
D++KI+L SG+T+S+PLV +RRSNKNTCMHQK +V RGK IK+GQILA+GAATVGGEL+
Sbjct: 599 DSHKILLSSSGKTISIPLVAHRRSNKNTCMHQKPRVPRGKSIKKGQILAEGAATVGGELA 658
Query: 651 LGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGP-ERITNKI 709
LGKNVLVAYMPWEGYN EDAVLIS+RLVYEDIYTSFHIRKYEIQT TS G E+IT +I
Sbjct: 659 LGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKITKQI 718
Query: 710 PHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVST 769
PHLE HLLRNLD+NG+V LGSWVE GDILVGKLTPQ+A ESSY E LLRAI G++VST
Sbjct: 719 PHLEEHLLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVST 778
Query: 770 SKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGI 829
SKET LKLPIGGRGRVIDV+W+ + + +YILQKREIKVGDKVAGRHGNKGI
Sbjct: 779 SKETSLKLPIGGRGRVIDVKWIQRDPFD----IMVRVYILQKREIKVGDKVAGRHGNKGI 834
Query: 830 VSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDE 889
+SKIL RQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAGD+L +HYRIAPFDE
Sbjct: 835 ISKILPRQDMPYLQDGAPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDE 894
Query: 890 RYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILK 949
RYEQEASRKLVFSELY+ASKQT NPW+FEPEYPGKSRIFDGRTG PFEQPV+IG YILK
Sbjct: 895 RYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILK 954
Query: 950 LIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYK 1009
LIHQVD+KIHGRS+G Y+LVTQQP++GRAKQGGQR+GEMEVWALEGFGVAHILQE+LTYK
Sbjct: 955 LIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEILTYK 1014
Query: 1010 SDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKE 1069
SDH+ ARQE+L TI G + D PESFR+LVRELRSLALELNHFLVSEKNF+++R++
Sbjct: 1015 SDHLIARQEILNATIWGKRMPNHEDPPESFRVLVRELRSLALELNHFLVSEKNFQVNRED 1074
Query: 1070 V 1070
V
Sbjct: 1075 V 1075
>prf||1603356P RNA polymerase beta [Oryza sativa]
Length = 1000
Score = 1574 bits (4030), Expect = 0.0
Identities = 795/1008 (78%), Positives = 878/1008 (86%), Gaps = 21/1008 (2%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
ML GNEGMST+PG +QIQFEGFCRFI++GL EEL KFP I+D D EI FQLF + YQL+
Sbjct: 1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEISFQLFAKGYQLL 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EPSIKE+DAVYESLTYSSELYVSA LI+ ++Q+QTI IGNIP+MNSLGT I+NGIYR
Sbjct: 61 EPSIKERDAVYESLTYSSELYVSARLIF--GFDVQKQTISIGNIPIMNSLGTFIINGIYR 118
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQIL SPGIYY+SELDHKGIS+YTGTIISDWGGR EL ID+K RIWARVSRKQKISI
Sbjct: 119 IVINQILLSPGIYYRSELDHKGISIYTGTIISDWGGRSELAIDKKERIWARVSRKQKISI 178
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
LVLSSAMGSNL EIL+NV YPEIFLSF N KE+K+I SKE AILEFY+QFACVGGD VF
Sbjct: 179 LVLSSAMGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFS 238
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC ELQKKFFQQ+CELG IGRRNMNRRLNLDIPQN+TFLLPRD+L A DHLIGMKF
Sbjct: 239 ESLCEELQKKFFQQKCELGRIGRRNMNRRLNLDIPQNSTFLLPRDVLAATDHLIGMKFET 298
Query: 301 GTLDD--MNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTS 358
G LDD MNHLKNKRIRSVADLLQDQFGLAL RL++ V+ TI + PTPQ LVT
Sbjct: 299 GILDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTP 358
Query: 359 TP----LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIH 414
T L TTYE+FFG +PLSQV D+TNPLTQ VHGRK+S LGPGGLTGRTASFR RDIH
Sbjct: 359 TSTSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIH 418
Query: 415 SSHYGRICPIDTSEGINVGLIGSLAIHARIGRW-GSIESPFFEISERSKRI---HMLYLS 470
SHYGRICPIDTSEGINVGL GSLAIHARI W GS+ESPF+EISE++K+ ++YLS
Sbjct: 419 PSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEKAKKKKERQVVYLS 478
Query: 471 PSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASL 530
P+RDEYYMIA GN L+LN+G QEEQ+VPARYRQEFLTIAWEQ+H+RSIF FQYFSIG SL
Sbjct: 479 PNRDEYYMIAAGNSLSLNRGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGSL 538
Query: 531 IPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYK 590
IPFIEHNDANRALMSSNMQRQAVPLS+SEKCIVGTGLERQ ALDS IAE EGKII
Sbjct: 539 IPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVSVIAEREGKIIST 598
Query: 591 DTNKIVLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELS 650
+++KI+L SG+T+S+PLV +RRSNKNTCMHQK +V RGK IK+GQILA+GAATVGGEL+
Sbjct: 599 NSHKILLSSSGKTISIPLVTHRRSNKNTCMHQKPRVPRGKSIKKGQILAEGAATVGGELA 658
Query: 651 LGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNG-PERITNKI 709
LGKNVLVAYMPWEGYN EDAVLIS+RLVYEDIYTSFHIRKYEIQT TS G E+IT +I
Sbjct: 659 LGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKITKEI 718
Query: 710 PHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVST 769
PHLE HLLRNLD+NG+V LGSWVE GDILVGKLTPQ+A ESSY E LLRAI G++VST
Sbjct: 719 PHLEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVST 778
Query: 770 SKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETI--HIYILQKREIKVGDKVAGRHGNK 827
SKET LKLPIGGRGRVIDV+W+ + +P I +YILQKREIKVGDKVAGRHGNK
Sbjct: 779 SKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNK 832
Query: 828 GIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPF 887
GI+SKIL RQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAGD+L +HYRIAPF
Sbjct: 833 GIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPF 892
Query: 888 DERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYI 947
DERYEQEASRKLVFSELY+ASKQT NPW+FEPEYPGKSRIFDGRTG PFEQPV+IG YI
Sbjct: 893 DERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYI 952
Query: 948 LKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEG 995
LKLIHQVD+KIHGRS+G Y+LVTQQP++GRAKQGGQR+GEMEVWALEG
Sbjct: 953 LKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEG 1000
>gi|7524615 RNA polymerase beta subunit [Pinus thunbergii]
sp|P41607|RPOB_PINTH DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||T07448 probable DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Japanese black pine chloroplast
dbj|BAA04326.1| (D17510) RNA polymerase beta subunit [Pinus thunbergii]
Length = 1075
Score = 1530 bits (3917), Expect = 0.0
Identities = 750/1072 (69%), Positives = 888/1072 (81%), Gaps = 9/1072 (0%)
Query: 6 NEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
NEG T+P +IQFEGFCRFID+GL EEL FPKIED D+EIEF+LF Y+L EP IK
Sbjct: 6 NEGAFTIPEFGKIQFEGFCRFIDQGLMEELHNFPKIEDIDKEIEFRLFGNEYELAEPFIK 65
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQ 125
E+DAVY+SLTY SELYV A I +NS+ IQ+QT+F+GNIPLMNS GT +VNGIYR+V+NQ
Sbjct: 66 ERDAVYQSLTYYSELYVPARSIRRNSRKIQKQTVFLGNIPLMNSHGTFVVNGIYRVVVNQ 125
Query: 126 ILQSPGIYYQSELDHKGIS-VYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLS 184
IL SPGIYY+SELDH I+ +YTGT+ISDWG R +LEID RIWARVSRKQKISI VL
Sbjct: 126 ILISPGIYYRSELDHNRINYIYTGTLISDWGRRSKLEIDVGERIWARVSRKQKISIPVLL 185
Query: 185 SAMGSNLNEILENVCYPEIFLSFLNDK----EEKKIGSKESAILEFYRQFACVGGDPVFP 240
SAMG NL EIL+N YPE FL L K E+ + S+E AILEFY++ C+ GD VF
Sbjct: 186 SAMGLNLEEILDNTRYPERFLFLLKKKGRWEREEYLWSREKAILEFYKKLYCISGDLVFS 245
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRM 300
ESLC+ELQKKFF++RCELG+IGRRN+N++LNLDIP+N F LP+D+L A D+LIG+KF M
Sbjct: 246 ESLCKELQKKFFRKRCELGKIGRRNLNQKLNLDIPENEIFSLPQDVLAAVDYLIGVKFGM 305
Query: 301 GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTP 360
GTLDD++HL+N+RIRSVADLLQ+QF LAL RLE+ V+ TI A + + TPQNLVTST
Sbjct: 306 GTLDDIDHLRNRRIRSVADLLQNQFRLALGRLEDAVKRTIRRATKRR--STPQNLVTSTL 363
Query: 361 LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGR 420
L T++ FFG HPLSQ LD+TNPLT+I HGRKLS+LGPGGLTGRTASFR RDIH S+YGR
Sbjct: 364 LKNTFQDFFGSHPLSQFLDQTNPLTEIAHGRKLSHLGPGGLTGRTASFRTRDIHPSYYGR 423
Query: 421 ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDE--YYM 478
ICPIDTSEG+N GL+ SL+IHA+IG GS++SPF++ISERS+ HM+YL P DE YY
Sbjct: 424 ICPIDTSEGMNAGLVASLSIHAKIGDCGSLQSPFYKISERSREEHMVYLLPGEDEDEYYR 483
Query: 479 IATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
IATGN LALNQG QEEQI PARYRQEF+ IAWEQ+H RSIF FQYFS+G SLIPF+EHND
Sbjct: 484 IATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFSVGVSLIPFLEHND 543
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLF 598
ANRALM SNMQRQAVPL + EKCI GTGLE Q ALDSG++AIA EG+I Y D I
Sbjct: 544 ANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEGRIEYIDAVNITSS 603
Query: 599 GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVA 658
+G+T+ VIY+RSN NTC HQK Q+ +G+C+K+GQILADGA TVGGELSLGKNVLVA
Sbjct: 604 VNGDTVRTESVIYQRSNTNTCTHQKPQIHQGECVKKGQILADGATTVGGELSLGKNVLVA 663
Query: 659 YMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLR 718
YMPWEGYN EDA+LIS+RLVYEDIYTSFHI +Y I+ +TS GPERIT +IPHL+ HLLR
Sbjct: 664 YMPWEGYNFEDAILISERLVYEDIYTSFHIVRYRIEICMTSQGPERITREIPHLDAHLLR 723
Query: 719 NLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLP 778
+LD+NGLV+LGSW+E GD+LVGKLTPQ +ES PE RLL+ I GI+VST++E CL+ P
Sbjct: 724 HLDENGLVMLGSWIETGDVLVGKLTPQTIEESLCTPEGRLLQTIFGIEVSTARENCLRAP 783
Query: 779 IGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQD 838
IGGRGRVIDVRW+++ SG N ET+H+YI QKR+I+VGDKV+GRHGNKGI+S +L RQD
Sbjct: 784 IGGRGRVIDVRWINRVDDSGDNAETVHVYISQKRKIQVGDKVSGRHGNKGIISIVLPRQD 843
Query: 839 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRK 898
MPYLQ+G PVDMV NPLGVPSRMNVGQIFEC GLAG+ +++HYRI PFDE+YE+EASRK
Sbjct: 844 MPYLQNGIPVDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRK 903
Query: 899 LVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKI 958
LVF ELY+AS+QT+NPW+FEP++PGK R+ DGRTG FEQPV IG Y+ KL HQVD+KI
Sbjct: 904 LVFPELYKASEQTANPWVFEPDHPGKHRLIDGRTGDVFEQPVTIGKAYMSKLSHQVDEKI 963
Query: 959 HGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQE 1018
H RSSG YA VTQQPL+G++K+GGQR+GEMEVWALEGFGVA+ILQEMLT KSDHI+ R E
Sbjct: 964 HARSSGPYARVTQQPLRGKSKRGGQRIGEMEVWALEGFGVAYILQEMLTLKSDHIRTRNE 1023
Query: 1019 VLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKEV 1070
VLG I GG I KP APESFRLL+RELRSLALELNH ++SEKNF+I R+EV
Sbjct: 1024 VLGAIITGGPIPKPDTAPESFRLLIRELRSLALELNHAIISEKNFQIDREEV 1075
>gi|11466679 rpoB [Marchantia polymorpha]
sp|P06272|RPOB_MARPO DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||RNLVB DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - liverwort
(Marchantia polymorpha) chloroplast
emb|CAA28061.1| (X04465) rpoB [Marchantia polymorpha]
Length = 1065
Score = 1477 bits (3783), Expect = 0.0
Identities = 711/1060 (67%), Positives = 875/1060 (82%), Gaps = 1/1060 (0%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
LP +IQFEGF RFI++GL+EEL FP IED DQE EFQ+F E Y+L EP +KE+DAVY
Sbjct: 6 LPEFGKIQFEGFNRFINQGLSEELSNFPIIEDIDQEFEFQIFGEQYKLAEPLLKERDAVY 65
Query: 72 ESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPG 131
+S+TYSS++YV A L K IQ+Q +F+G+IPLMNS GT +VNG+ R++INQIL+SPG
Sbjct: 66 QSITYSSDVYVPAQLTQKKKGKIQKQIVFLGSIPLMNSQGTFVVNGVARVIINQILRSPG 125
Query: 132 IYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNL 191
IYY SELDH GI +YTGT+IS+WGGRL+LEID K RIWAR+S+K+K+SILVL AMG NL
Sbjct: 126 IYYNSELDHNGIPIYTGTLISNWGGRLKLEIDGKTRIWARISKKRKVSILVLLLAMGLNL 185
Query: 192 NEILENVCYPEIFLSFLNDKEEKKI-GSKESAILEFYRQFACVGGDPVFPESLCRELQKK 250
IL++VCYP+IFL F+ +K+ S E AI+E Y+ C+GGD F ES+ +ELQKK
Sbjct: 186 QNILDSVCYPKIFLEFIKKNTKKEYPNSTEDAIVELYKHLYCIGGDLFFSESIRKELQKK 245
Query: 251 FFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLK 310
FFQQRCELG+IGR N+N++LNL++P+N F+LP+DIL A D+LI +KF +GT+DD++HLK
Sbjct: 246 FFQQRCELGKIGRLNLNKKLNLNVPENEIFVLPQDILAAVDYLIKLKFGIGTIDDIDHLK 305
Query: 311 NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFG 370
N+R+ SVADLLQDQ LAL RLEN V GA + K +PTP++LVTSTPL T++ FFG
Sbjct: 306 NRRVCSVADLLQDQLKLALNRLENSVLFFFRGATKRKRLPTPKSLVTSTPLIMTFKEFFG 365
Query: 371 LHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGI 430
HPLSQ LD+TNPLT+IVH R+LS LGPGGLT RTASF++RDIH+SHYGRICPI+TSEG+
Sbjct: 366 SHPLSQFLDQTNPLTEIVHKRRLSSLGPGGLTRRTASFQVRDIHASHYGRICPIETSEGM 425
Query: 431 NVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQG 490
N GLI SLAIHA+I G +ESPF++IS+ S ++ LS + DEYY IATGN LAL+Q
Sbjct: 426 NAGLIASLAIHAKISILGCLESPFYKISKLSNLEEIINLSAAEDEYYRIATGNCLALDQN 485
Query: 491 NQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQR 550
+QEEQI PARYRQ+F+ IAWEQVHLRSIF QYFS+GASLIPF+EHNDANRALM SNMQR
Sbjct: 486 SQEEQITPARYRQDFVAIAWEQVHLRSIFPLQYFSVGASLIPFLEHNDANRALMGSNMQR 545
Query: 551 QAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSVPLVI 610
QAVPL + EKCIVGTG+E Q ALDSG++ ++ H GKI Y D N+I+L + + L+I
Sbjct: 546 QAVPLLKPEKCIVGTGIESQTALDSGSVTVSSHGGKIEYLDGNQIILSLKKKKIDKNLII 605
Query: 611 YRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDA 670
Y+RSN +TCMHQK +V++ K IK+GQILADGAAT GEL+LGKN+LVAYMPWEGYN EDA
Sbjct: 606 YQRSNNSTCMHQKPKVEKQKYIKKGQILADGAATANGELALGKNILVAYMPWEGYNFEDA 665
Query: 671 VLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGS 730
+LI++RL+YEDIYTS HI +YEI+ VTS GPE+ TN+IPHL+ +LLR+LD+NG+V+ GS
Sbjct: 666 ILINERLIYEDIYTSIHIERYEIEARVTSQGPEKFTNEIPHLDDYLLRHLDQNGIVLTGS 725
Query: 731 WVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRW 790
WVE GD+LVGKLTPQ +E+ APE +LL+AI GIQV+TSKETCLK+P GGRGRVID+R
Sbjct: 726 WVETGDVLVGKLTPQETEENLRAPEGKLLQAIFGIQVATSKETCLKVPPGGRGRVIDIRL 785
Query: 791 LHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDM 850
+ ++ S + IHIYILQKR+I++GDKVAGRHGNKGI+SKIL RQDMP+LQDG P+DM
Sbjct: 786 ISQEDNSANTAQIIHIYILQKRKIQIGDKVAGRHGNKGIISKILPRQDMPFLQDGTPIDM 845
Query: 851 VFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQ 910
+ +PLGVPSRMNVGQIFEC LGLAG L ++YRI PFDERYE+EASRKLVFSELY+ASK+
Sbjct: 846 ILSPLGVPSRMNVGQIFECLLGLAGSFLHKNYRIIPFDERYEREASRKLVFSELYKASKK 905
Query: 911 TSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVT 970
T+NPW+FEP+ PGK+R+ DGRTG FEQP+ IG Y+LKLIHQVDDKIH RSSG YALVT
Sbjct: 906 TTNPWLFEPDNPGKNRLIDGRTGEIFEQPITIGKAYMLKLIHQVDDKIHARSSGPYALVT 965
Query: 971 QQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIS 1030
QQPL+GR+++GGQRVGEMEVWALEGFGVA+ILQEMLT KSDHI+AR EVLG + G I
Sbjct: 966 QQPLRGRSRRGGQRVGEMEVWALEGFGVAYILQEMLTIKSDHIRARYEVLGAIVTGEPIP 1025
Query: 1031 KPVDAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKEV 1070
KP APESF+LLVRELRSLALE+NH ++ EKN ++ KE+
Sbjct: 1026 KPNTAPESFKLLVRELRSLALEINHVIICEKNLKLKLKEI 1065
>gi|11466382 beta subunit of RNA polymerase [Mesostigma viride]
gb|AAF43826.1|AF166114_38 (AF166114) beta subunit of RNA polymerase [Mesostigma viride]
Length = 1080
Score = 1003 bits (2564), Expect = 0.0
Identities = 527/1069 (49%), Positives = 713/1069 (66%), Gaps = 36/1069 (3%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
+P L ++Q F F+ +GL EEL F I ++ + +E + F E Y+L P E+ ++
Sbjct: 19 IPDLIEMQLSSFRIFLKKGLIEELKDFSVISNSKKNLELRFFPEKYKLKRPKYNERTSIR 78
Query: 72 ESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPG 131
+ TY+ +LYV A L K + IQEQ +F+G IPLM G+ I+NG R+++NQI++SPG
Sbjct: 79 RASTYTCQLYVPAKLTNKRTGEIQEQDVFLGEIPLMTGRGSFIINGSSRVIVNQIVRSPG 138
Query: 132 IYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNL 191
IYY+ E+D KG ++ TIIS+ G L +E D+ IWAR+ + +K+SI+++ AMG
Sbjct: 139 IYYKREIDKKGRKTHSATIISNRGAWLRIETDKNGLIWARIGKIRKVSIMIVFKAMGLTK 198
Query: 192 NEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLC-----RE 246
NEI + + YP+ + + + Y + D ES RE
Sbjct: 199 NEIFDALKYPQFLKKTIQETDP-------------YLENDIQHDDDFENESTSTLLSTRE 245
Query: 247 -LQKKFFQQRC-ELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLD 304
L+ +FFQ + +LG++GR +N++L L+IP+N L +DIL A D+LI ++F +GTLD
Sbjct: 246 ILESRFFQSKYYDLGKVGRYKINKKLQLNIPENIRVLTVQDILAAVDYLINLEFNIGTLD 305
Query: 305 DMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTT 364
D++HLKN+R+RSV +L+Q+Q + L RLE M+ + + L T +LV PL
Sbjct: 306 DIDHLKNRRVRSVGELIQNQVRVGLGRLERMIYKRMGESSPDSLTLT--SLVNPKPLVGA 363
Query: 365 YESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPI 424
FFG LSQ +D+TNPL++I H R+LS LGPGGL+ A +RDIH SHYGRICPI
Sbjct: 364 IREFFGSSQLSQFMDQTNPLSEITHKRRLSCLGPGGLSRERAGLAVRDIHPSHYGRICPI 423
Query: 425 DTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERS--KRIHMLYLSPSRDEYYMIATG 482
+T EG N GLIGSLA H+R+ +G +ESPF+ R K +YL+P +++ + +A G
Sbjct: 424 ETPEGPNAGLIGSLATHSRVNEYGFLESPFYITKNRKVIKSELPIYLAPDQEDQFKVAPG 483
Query: 483 NYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRA 542
+ L + E VP RY+QEF T E+V I Q SI SLIPF+EH+DANRA
Sbjct: 484 DLLLSCYSSIENNYVPVRYKQEFTTSKAEEVDYVGISPTQAISIATSLIPFLEHDDANRA 543
Query: 543 LMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL----- 597
LM SNMQRQAVPL + + IVGTG E QVALDSGT+ I H+G +I D+ I++
Sbjct: 544 LMGSNMQRQAVPLLKPNRPIVGTGFEEQVALDSGTVVICRHKGIVISVDSKTILVRSLRM 603
Query: 598 ----FGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGK 653
L Y RSN++TC++QK V +G+ +++G ILADG+ATV GEL+LG+
Sbjct: 604 NAKGIQHSHIDRYYLQKYNRSNQDTCINQKPVVSQGEWVQKGDILADGSATVNGELTLGQ 663
Query: 654 NVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLE 713
N+LVAYMPWEGYN EDA+LIS++LVYEDIYTS HI KYE+ T GPE+IT +IP++
Sbjct: 664 NILVAYMPWEGYNFEDAILISEKLVYEDIYTSIHIEKYEVDARKTKLGPEKITREIPNVN 723
Query: 714 VHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKET 773
HLLRNLD NG+VI G+ VE+GDILVGK+TP+ ++ PE +LLRAI G + +++
Sbjct: 724 DHLLRNLDDNGIVIPGARVESGDILVGKVTPK--EDLDQHPEGKLLRAIFGEKARDVRDS 781
Query: 774 CLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKI 833
L++P G G V++VR L K +H+ I QKR+I+VGDK+AGRHGNKGI+SKI
Sbjct: 782 SLRVPNGVSGTVVNVRRLTGKELPSGVIMMVHVSISQKRKIQVGDKMAGRHGNKGIISKI 841
Query: 834 LARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQ 893
L RQDMPYLQDG PVDMV NPLGVPSRMNVGQ+FEC LGLAG+ L +Y++ PFDE Y +
Sbjct: 842 LPRQDMPYLQDGTPVDMVLNPLGVPSRMNVGQVFECLLGLAGEYLSENYKLMPFDEMYGK 901
Query: 894 EASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQ 953
E SR LV+S+LY+A ++T PW+F + PGKS++FDGRTG F+QPV IG Y+LKL+H
Sbjct: 902 ETSRGLVYSKLYEARQKTGYPWLFNIQSPGKSKLFDGRTGESFDQPVTIGKAYMLKLVHL 961
Query: 954 VDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHI 1013
VDDKIH RS+G Y+LVTQQPL GRAK GGQR+GEMEVWALEGFG A+ LQE+LT KSD +
Sbjct: 962 VDDKIHARSTGPYSLVTQQPLGGRAKHGGQRLGEMEVWALEGFGAAYTLQELLTIKSDDM 1021
Query: 1014 KARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKN 1062
K R + L I G I KP PESF++L+REL+SL L++ + V + N
Sbjct: 1022 KGRNDALNAIIKGRPIPKP-GTPESFKVLIRELQSLCLDIGVYKVHKSN 1069
>gi|11467690 RNA polymerase b-chain [Guillardia theta]
sp|O78485|RPOB_GUITH DNA-DIRECTED RNA POLYMERASE BETA CHAIN
gb|AAC35676.1| (AF041468) RNA polymerase b-chain [Guillardia theta]
Length = 1096
Score = 964 bits (2466), Expect = 0.0
Identities = 505/1059 (47%), Positives = 703/1059 (65%), Gaps = 25/1059 (2%)
Query: 11 TLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAV 70
TLP L +IQ FC F++ GL EE+ F I + +E LF + Y L P +
Sbjct: 10 TLPDLVEIQRASFCWFLNEGLAEEIQSFSPIVNYTGNLELHLFGDQYTLRYPKHNINECK 69
Query: 71 YESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSP 130
TYS ++YV A LI + + I+EQ +FIG++PLM GT I+NG R+++NQI++SP
Sbjct: 70 RRDTTYSVQIYVPAQLINRETGVIKEQEVFIGDLPLMTDRGTFIINGAERVIVNQIVRSP 129
Query: 131 GIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSN 190
GIYY+SELD +G Y+ ++IS+ G ++ E DR +W R+ + +KI V AMG +
Sbjct: 130 GIYYKSELDKQGRRTYSSSLISNRGAWVKFETDRNDLVWVRIDKTRKIPAHVFLKAMGLS 189
Query: 191 LNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKK 250
+I + +PE + + E+A+++ Y + G+P + L +
Sbjct: 190 DTDIYNGLRHPEYLKKTFRFEGNY---TTETALIQMYNKLR--PGEPATVTGGQQLLYSR 244
Query: 251 FFQ-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHL 309
FF +R +LG++GR +N++LNL +P+N L P+D L A D+LI +KF +G DD++HL
Sbjct: 245 FFDPKRYDLGKVGRYKLNKKLNLSVPENVRVLTPQDTLAAIDYLINLKFEIGETDDIDHL 304
Query: 310 KNKRIRSVADLLQDQFGLALVRLENMVRG--TICGAIRYKLIPTPQNLVTSTPLTTTYES 367
N+R+RSV +LLQ+Q + L RLE ++R TIC TP LV P+ +
Sbjct: 305 GNRRVRSVGELLQNQVRIGLNRLERIIRERMTICDITSL----TPNTLVNPKPIIASIRE 360
Query: 368 FFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTS 427
FFG LSQ +D+TNPL ++ H R++S LGPGGL A F +RDIH SHYGRICPI+T
Sbjct: 361 FFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLNRDRAGFGVRDIHPSHYGRICPIETP 420
Query: 428 EGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHM--LYLSPSRDEYYMIATGNYL 485
EG N GLIG LA HARI +G IE+PFF++ + H +YL+ +++ Y IA G+ +
Sbjct: 421 EGPNAGLIGVLATHARINTYGFIEAPFFKVQDGQVYNHSQPIYLTADQEDKYRIAPGD-I 479
Query: 486 ALNQGNQ-EEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALM 544
L++ N+ +IVP +YRQEF T QV ++ Q SI SLIPF+EH+DANRALM
Sbjct: 480 TLDETNRIATKIVPIKYRQEFTTTKPNQVDFIAVSPIQVISIATSLIPFLEHDDANRALM 539
Query: 545 SSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGS-GET 603
SNMQRQAVPL E +VGTGLE Q A DSG + ++ +G++ + +KI + G+
Sbjct: 540 GSNMQRQAVPLLYPESPLVGTGLEAQAARDSGMVVVSIEDGQVTFVSGDKICVTNKKGDE 599
Query: 604 LSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWE 663
++ L Y+RSN++TC++Q+ V G+ + GQ++ADGAAT GGEL+LG+N+LVAY+PWE
Sbjct: 600 IAYYLQKYQRSNQDTCINQRPTVWLGEDVIEGQVIADGAATEGGELALGQNILVAYLPWE 659
Query: 664 GYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKN 723
GYN EDA LI++RLVY D+YTS HI KYEI+ T G E IT ++P++ LR LD+N
Sbjct: 660 GYNYEDAFLINERLVYNDVYTSVHIEKYEIEARQTKLGSEEITRELPNVGEAALRKLDEN 719
Query: 724 GLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRG 783
G++++GSWVEAGDIL+GK+TP+ ES PE +LLRAI G + ++T L++P GGRG
Sbjct: 720 GIIVIGSWVEAGDILIGKVTPK--GESDQPPEGKLLRAIFGEKARDVRDTSLRVPNGGRG 777
Query: 784 RVIDVRWLHKKGG----SGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDM 839
R++DVR ++ G +G N I +YI Q R+I+VGDK+AGRHGNKGI+S+IL RQDM
Sbjct: 778 RILDVRIFTREKGDELPTGANI-VIRVYIAQSRKIQVGDKMAGRHGNKGIISRILPRQDM 836
Query: 840 PYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKL 899
PYL DG PVD+V NPLGVPSRMNVGQIFEC LGLA + L++ ++I PFDE + EASR L
Sbjct: 837 PYLPDGTPVDLVLNPLGVPSRMNVGQIFECLLGLAAENLNKRFKITPFDEMHGAEASRVL 896
Query: 900 VFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIH 959
V +L +A +T W+F+ +PGK ++DGRTG F+ PV IG Y+LKL+H VDDKIH
Sbjct: 897 VNEKLNEAKIKTGENWLFDLRHPGKITLYDGRTGEAFDNPVTIGVSYMLKLVHLVDDKIH 956
Query: 960 GRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEV 1019
RS+G Y+LVTQQPL GRA+ GGQR+GEMEVWALE FG ++ LQE+LT KSD ++ R E
Sbjct: 957 ARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGASYTLQELLTVKSDDMQGRNET 1016
Query: 1020 LGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLV 1058
L + G I +P PESF++L+REL+SL L++ + +
Sbjct: 1017 LNAIVKGKPIPRP-GTPESFKVLMRELQSLGLDIGAYKI 1054
>sp|P77965|RPOB_SYNY3 DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||S77518 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Synechocystis
sp. (strain PCC 6803)
dbj|BAA17365.1| (D90905) RNA polymerase beta subunit [Synechocystis sp.]
Length = 1102
Score = 963 bits (2463), Expect = 0.0
Identities = 494/1062 (46%), Positives = 708/1062 (66%), Gaps = 24/1062 (2%)
Query: 6 NEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
N + LP L +IQ F F++ GL EEL F I D ++E + Y+L +P
Sbjct: 3 NLATTMLPDLIEIQHASFHWFLEEGLIEELNSFSPISDYTGKLELHFLGKDYKLKQPKYD 62
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQ 125
++ +YS ++YV LI K + I+EQ +FIG++PLM GT I+NG R+++NQ
Sbjct: 63 VDESKRRDASYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTERGTFIINGAERVIVNQ 122
Query: 126 ILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSS 185
I++SPG+YY+ ELD G Y+ ++I + G L+ E D+ ++ R+ + +K+S VL
Sbjct: 123 IVRSPGVYYKKELDKNGRRTYSASLIPNRGAWLKFETDKNGLVYVRIDKTRKLSAQVLLK 182
Query: 186 AMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCR 245
A+G + NEIL+++ +PE + L DKE ++E A++E Y++ G+P +
Sbjct: 183 AIGLSDNEILDSLSHPEFYQKTL-DKEGNP--TEEEALVELYKKLR--PGEPPTVSGGQQ 237
Query: 246 ELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLD 304
L+ +FF +R +LG +GR +N++L L+ L P+DIL A ++LI ++F +GT D
Sbjct: 238 LLESRFFDPKRYDLGRVGRYKLNKKLRLNEADTTRVLTPQDILAAINYLINLEFDVGTTD 297
Query: 305 DMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTT 364
D++HL N+R+RSV +LLQ+Q + L RLE ++R + + L TP +LV PL
Sbjct: 298 DIDHLGNRRVRSVGELLQNQIRVGLNRLERIIRERMTVSESDAL--TPASLVNPKPLVAA 355
Query: 365 YESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPI 424
+ FFG LSQ +D+TNPL ++ H R++S LGPGGLT A F +RDIH SH+GRICP+
Sbjct: 356 IKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHHGRICPV 415
Query: 425 DTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKR--IHMLYLSPSRDEYYMIATG 482
+T EG N GLIGSLA AR+ +G IE+P+F + R + +YL+ ++ +A G
Sbjct: 416 ETPEGPNAGLIGSLATCARVNDYGFIETPYFRVESGRVRKDLDPVYLTADEEDDMRVAPG 475
Query: 483 NYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRA 542
+ +GN + VP RYRQEF T + EQV ++ Q S+ S+IPF+EH+DANRA
Sbjct: 476 DIPTDEEGNIIGESVPIRYRQEFSTTSPEQVDYVAVSPVQIISVATSMIPFLEHDDANRA 535
Query: 543 LMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL----- 597
LM SNMQRQAVPL + E+ +VGTGLE Q A DSG + ++ G + Y D +I +
Sbjct: 536 LMGSNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRTHGIVTYVDATEIRVQPHSP 595
Query: 598 ---FGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKN 654
GE + P+ Y+RSN++TC++Q+ V G+ + GQ+LADG+AT GGEL+LG+N
Sbjct: 596 DNPAEKGEEIVYPIQKYQRSNQDTCLNQRPLVYAGEDVVPGQVLADGSATEGGELALGQN 655
Query: 655 VLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEV 714
+LVAYMPWEGYN EDA+LIS+RLVY+D+YTS HI K+EI+ T GPE IT +IP++
Sbjct: 656 ILVAYMPWEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGE 715
Query: 715 HLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETC 774
LRNLD++G++ +G+WVE+GDILVGK+TP+ E+ PE++LLRAI G + ++
Sbjct: 716 DALRNLDEHGIIRIGAWVESGDILVGKVTPK--GEADQPPEEKLLRAIFGEKARDVRDNS 773
Query: 775 LKLPIGGRGRVIDVRWLHKKGGSGYNPET---IHIYILQKREIKVGDKVAGRHGNKGIVS 831
L++P G +GRV+DVR ++ G P + IY+ QKR+I+VGDK+AGRHGNKGI+S
Sbjct: 774 LRVPNGEKGRVVDVRVFTREKGDELPPGANMVVRIYVAQKRKIQVGDKMAGRHGNKGIIS 833
Query: 832 KILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERY 891
+IL +DMPYL DGRP+D+ NPLGVPSRMNVGQ+FEC LG AG+ L ++I PFDE Y
Sbjct: 834 RILPIEDMPYLPDGRPIDIALNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMY 893
Query: 892 EQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLI 951
+EASR V L +AS++ + W+F +PGK ++FDGRTG PF++P+ +G Y+LKL+
Sbjct: 894 GEEASRDTVHGLLEEASQRPNKDWVFNENHPGKIQVFDGRTGEPFDRPITVGQAYMLKLV 953
Query: 952 HQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSD 1011
H VDDKIH RS+G Y+LVTQQPL G+A+QGGQR GEMEVWALE +G A+ILQE+LT KSD
Sbjct: 954 HLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSD 1013
Query: 1012 HIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
++ R E L + G +I +P PESF++L+REL+SL L++
Sbjct: 1014 DMQGRNEALNAIVKGKSIPRP-GTPESFKVLMRELQSLGLDI 1054
>gi|11465718 DNA-directed RNA polymerase beta chain [Porphyra purpurea]
sp|P51252|RPOB_PORPU DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||S73173 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - red alga
(Porphyra purpurea) chloroplast
gb|AAC08138.1| (U38804) DNA-directed RNA polymerase beta chain [Porphyra purpurea]
Length = 1143
Score = 950 bits (2428), Expect = 0.0
Identities = 512/1094 (46%), Positives = 700/1094 (63%), Gaps = 61/1094 (5%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
LP L +IQ + F F+ GLTE L FP I D +E QLF + Y++ P + A
Sbjct: 12 LPDLVEIQRDSFKWFLLEGLTEVLEFFPNISDPTSRLELQLFGKEYKIKFPRYSVRQAKS 71
Query: 72 ESLTYSSELYVSAGLIWKN-------------------------------SKNIQEQTIF 100
TYS+++YV A L K+ +K +++ +F
Sbjct: 72 RDRTYSAQIYVPAKLTRKDIDLPSKDQNKTIKSLDLSSNHLQFSAEKQIKNKKYKKRLVF 131
Query: 101 IGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLEL 160
IG++P+M + GT IV+G R++INQI++SPGIYY+ ++D G +Y+ ++IS+ G L+
Sbjct: 132 IGDLPIMTNRGTFIVSGTERVIINQIIRSPGIYYKQDIDKNGKQIYSASLISNRGSWLKF 191
Query: 161 EIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSK- 219
EID K IW R+ + K++ + A+G N NEI + + +S K++ +
Sbjct: 192 EIDPKGEIWIRIDKTHKVNAYIFLRAIGLNKNEIQKGLSKYAFLISASQSYSVKELAKEI 251
Query: 220 ----------ESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNR 268
E A+L Y + +P + L +FF +R +LGE+GR +N+
Sbjct: 252 GKNDIEEVTDEEALLIVYSKLR--PNEPATVPVAKQMLYSRFFDPKRYDLGEVGRYKINK 309
Query: 269 RLNLDIPQNNTFLLPRDILTAADHLIGMKFR-MGTLDDMNHLKNKRIRSVADLLQDQFGL 327
+L L+IP+ L P+DIL++ D+LI +K + G LDD++HL N+R+RSV +LLQ+QF +
Sbjct: 310 KLGLNIPKTFRVLSPQDILSSIDYLINIKDKNSGNLDDIDHLGNRRVRSVGELLQNQFRV 369
Query: 328 ALVRLENMVRGT--ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLT 385
L RLE ++R IC L NL+ PL + FFG LSQ +D+TNP+
Sbjct: 370 GLNRLERIIRERMMICDIDSLSL----SNLINPKPLIASVREFFGSSQLSQFMDQTNPVA 425
Query: 386 QIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIG 445
++ H R++S LGPGG A F +RD+H SHYGRICPI+T EG N GLIGSLA AR+
Sbjct: 426 ELTHKRRISALGPGGFNKDRAGFAVRDLHPSHYGRICPIETPEGPNAGLIGSLATCARVN 485
Query: 446 RWGSIESPFFEI--SERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQ 503
+G IE+PF+ + + + +YL+ ++ + +A G+ Q E I+P RYRQ
Sbjct: 486 IFGFIETPFYPVHNGQVDYSNNPIYLTADEEDDFRVAPGDVKVNVQNYIEGDIIPVRYRQ 545
Query: 504 EFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIV 563
EF+T QV +I Q S SLIPF+EH+DANRALM SNMQRQAVPL EK I+
Sbjct: 546 EFVTTIPNQVDYIAISPIQVISAATSLIPFLEHDDANRALMGSNMQRQAVPLLYPEKPII 605
Query: 564 GTGLERQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVIYRRSNKNTCMHQ 622
GTGLE ++A DSG + I+ G + Y NKI + +G T+ L Y RSN++TC++Q
Sbjct: 606 GTGLETKIARDSGMVVISRTSGCVNYVSANKIGIQDNNGRTVLYRLKKYYRSNQDTCINQ 665
Query: 623 KSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDI 682
+ V G+ I GQ LADGA+T GE++LG+N+LVAYMPWEGYN EDA LIS+RLVYED+
Sbjct: 666 RPIVWVGEKIVVGQTLADGASTDCGEIALGRNILVAYMPWEGYNYEDAFLISERLVYEDV 725
Query: 683 YTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKL 742
YTS HI KYE++ T GPE IT +IP++ H L++LD+NG+V+ GSWVEAGDILVGK+
Sbjct: 726 YTSIHIEKYEVECRQTKLGPEEITREIPNVSDHSLKDLDRNGIVVCGSWVEAGDILVGKI 785
Query: 743 TPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPE 802
TP+ E+ PE +LLRAI G + ++T L+LP +GRV++VR ++ G P
Sbjct: 786 TPK--GEADQLPEGKLLRAIFGEKARDVRDTSLRLPNAAKGRVVNVRVFTRQKGDELPPG 843
Query: 803 T---IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPS 859
T I +Y+ QKR+I+VGDK+AGRHGNKGI+S+IL +QDMPYL DG PVD+V NPLGVPS
Sbjct: 844 TNAMIRVYVAQKRKIQVGDKMAGRHGNKGIISRILPKQDMPYLCDGTPVDIVLNPLGVPS 903
Query: 860 RMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEP 919
RMNVGQ+FEC LGLAG LD+ ++I PFDE Y EASR LV +L +AS T N WIF
Sbjct: 904 RMNVGQVFECLLGLAGGYLDKRFKIIPFDEMYGAEASRALVNRKLQEASILTKNKWIFND 963
Query: 920 EYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAK 979
++PGK ++FDGRTG PF+ PV IG Y+LKL+H VDDKIH RS+G Y+LVTQQPL GRA+
Sbjct: 964 QHPGKMQVFDGRTGEPFDNPVTIGRAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQ 1023
Query: 980 QGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESF 1039
GGQR+GEMEVWALE FG A+ LQE+LT KSD ++AR E L + G I KP PESF
Sbjct: 1024 HGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQARNEALNAIVKGKPIPKP-GTPESF 1082
Query: 1040 RLLVRELRSLALEL 1053
++L+REL+SL L++
Sbjct: 1083 KVLMRELQSLGLDI 1096
>gi|11465577 unknown; DNA-directed RNA polymerase beta chain [Cyanidium caldarium]
gb|AAF13014.1|AF022186_187 (AF022186) unknown; DNA-directed RNA polymerase beta chain [Cyanidium
caldarium]
Length = 1081
Score = 912 bits (2332), Expect = 0.0
Identities = 479/1050 (45%), Positives = 692/1050 (65%), Gaps = 23/1050 (2%)
Query: 15 LNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESL 74
L +Q E F F+ GL +EL F I D ++E L + +P ++A
Sbjct: 15 LLSVQRESFYSFLTEGLAKELNNFSPIIDYTGKLELHLVTNQLVIKKPKFSFEEAKRRDC 74
Query: 75 TYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY 134
+Y+ + + L KNS +++EQ I +G IPLM GT ++NG R+++NQI++SPGIY+
Sbjct: 75 SYTISINIVTQLFNKNSGDVKEQEILLGEIPLMTQKGTFVINGAERVIVNQIVRSPGIYF 134
Query: 135 QSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEI 194
SE+D + + II + G L+ EID+ IW R+ + +KI++ + A+G + +++
Sbjct: 135 NSEMDKNNLKTFNFLIIPNRGAWLKCEIDKNDLIWIRIDKNKKINLSIFFKALGIDHDDL 194
Query: 195 LENVCY--PEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFF 252
+ PE LN E +++ A+ E +++ G+P E+ + L KFF
Sbjct: 195 RIKNAFRQPEFIYKNLNKDENY---TQQEALEELHKKL--FPGEPATSEASTKILYFKFF 249
Query: 253 Q-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKN 311
++ +LG +GR+ +N++L+L+ P+N L +DIL+ ++LI +KF G +DD++HL N
Sbjct: 250 NPKKYDLGIVGRKKINKKLDLNSPENIRILTIQDILSGINYLINLKFGFGNIDDIDHLAN 309
Query: 312 KRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGL 371
+R++SV +LLQ Q + L+RLE +++ + + L+P+ L+ P+ + FF
Sbjct: 310 RRLKSVGELLQSQISIGLIRLERLIKERMTICEQSSLVPSA--LINPKPIFAAIKEFFNS 367
Query: 372 HPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGIN 431
LSQ +D+ NPL ++ H R++S LGPGGL+ A F +RDIH SHYGRICPI+T EG N
Sbjct: 368 SQLSQFMDQVNPLAELTHKRRVSSLGPGGLSKERAGFAVRDIHPSHYGRICPIETPEGPN 427
Query: 432 VGLIGSLAIHARIGRWGSIESPFFEISERS--KRIHMLYLSPSRDEYYMIATGNYLALNQ 489
GLIGSLAI+ARI G IE+PF+++++ K ++YL +++ + IA G+ + +N+
Sbjct: 428 AGLIGSLAIYARINPDGFIEAPFYKVNQGQVLKNKGIIYLDAEQEDEFKIAPGD-IRINE 486
Query: 490 GNQEEQI-VPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNM 548
N ++I VP RYRQEF E++ ++ Q S SLIPF+EHNDANRALM SNM
Sbjct: 487 TNFIKEINVPVRYRQEFTQCPAEEIDFIAVSPIQVISAATSLIPFLEHNDANRALMGSNM 546
Query: 549 QRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGET-LSVP 607
QRQAVPL E+ +VGTGLE Q+A DSG +AI+ G + + KI++ S ++
Sbjct: 547 QRQAVPLIFPERPLVGTGLEAQIAKDSGIMAISRSNGIVKFTSAEKIIVTDSSNNQITYN 606
Query: 608 LVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNS 667
L Y++SN+ TC++ + V G+ IK+GQILADG+AT GEL+LG++VLVAYMPWEGYN
Sbjct: 607 LQKYQKSNQETCINHRPIVWPGERIKKGQILADGSATDTGELALGRDVLVAYMPWEGYNY 666
Query: 668 EDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVI 727
EDA LISDRLVYED+YTS HI KYEI+ T GPE IT IP++ + L+ LD+NG+V+
Sbjct: 667 EDAFLISDRLVYEDLYTSIHIEKYEIEARQTKLGPEEITRNIPNVGENSLKQLDENGIVV 726
Query: 728 LGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVID 787
+ S+VE+G ILVGK+TP+ ES PE +LL+AI G + K+T L+LP G RGRV+D
Sbjct: 727 VSSFVESGSILVGKVTPK--GESDQPPESKLLQAIFGEKNKDVKDTSLRLPNGTRGRVVD 784
Query: 788 VRWLHKKGGS----GYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQ 843
VR ++ G G N + IY+ QKR+I++GDK+AGRHGNKGI+SKIL RQDMPYL
Sbjct: 785 VRIFSREKGDELAVGIN-YIVRIYVAQKRKIQIGDKMAGRHGNKGIISKILPRQDMPYLP 843
Query: 844 DGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSE 903
+G PVD++ NPLGVPSRMNVGQIFEC LG++ L + +RI PFDE YE ++SR L+ +
Sbjct: 844 NGTPVDIILNPLGVPSRMNVGQIFECILGISAFNLKKRFRILPFDEMYESDSSRILINQK 903
Query: 904 LYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSS 963
L +A T+ ++F + GK +FDGR+G F+ PV++G Y++KL+H VDDKIH RS+
Sbjct: 904 LKEAQTLTNLDYLFNENHLGKVALFDGRSGEKFDNPVLVGKIYMMKLVHLVDDKIHSRST 963
Query: 964 GHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTT 1023
G Y+LVTQQPL G+A+QGGQR+GEMEVWA E FG A+ LQE+LT KSD I+ R E L
Sbjct: 964 GPYSLVTQQPLGGKAQQGGQRLGEMEVWAFEAFGAAYALQELLTIKSDDIQGRNEALTAI 1023
Query: 1024 IIGGTISKPVDAPESFRLLVRELRSLALEL 1053
+ G TI KP PES ++L+RE++SL L++
Sbjct: 1024 VRGKTIPKP-GTPESLKVLMREIQSLGLDI 1052
>gi|11467373 beta subunit of RNA polymerase [Cyanophora paradoxa]
sp|P48119|RPOB_CYAPA DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||T06918 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Cyanophora
paradoxa cyanelle
gb|AAA81261.1| (U30821) beta subunit of RNA polymerase [Cyanophora paradoxa]
Length = 1103
Score = 907 bits (2319), Expect = 0.0
Identities = 469/1053 (44%), Positives = 687/1053 (64%), Gaps = 24/1053 (2%)
Query: 15 LNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESL 74
L +IQ F F + GL EE+ F + D E +++ Y+L P+ ++A L
Sbjct: 14 LLEIQKASFKWFFEEGLIEEIENFSPVIDLRGNFEVHFYLKNYELEAPTFTLEEAKQRDL 73
Query: 75 TYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY 134
TY+++LY+ L + +++ IF G IPLM T ++NG+ R++INQI++SPGIYY
Sbjct: 74 TYAAQLYIPVELRDLETGIVKQDRIFFGEIPLMTDRCTFLINGVERVIINQIIRSPGIYY 133
Query: 135 QSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEI 194
D +G Y TIIS+ G L+ E+D+ IW R+ + ++ + A+ + +EI
Sbjct: 134 SVNTDEQGTRTYDVTIISNRGAWLKFEVDKDDLIWMRIDKTHRLPCHIFLKALNLSESEI 193
Query: 195 LENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRE--LQKKFF 252
L + +PE + + + ++E A++EF+RQ G+P P S+ L +FF
Sbjct: 194 LSALTHPEFLQKTIYEHGDC---TEEEALIEFHRQLR--PGEP--PNSIQGRYLLYSRFF 246
Query: 253 Q-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKN 311
+R +LG +GR +N++LNL++ N L +DIL ++LI ++F MG +DD++HL N
Sbjct: 247 DPKRYDLGFVGRYKLNKKLNLNVSPNIRILTTQDILEILNYLINLQFGMGQIDDIDHLGN 306
Query: 312 KRIRSVADLLQDQFGLALVRLENMV--RGTICGAIRYKLIPTPQNLVTSTPLTTTYESFF 369
+R+++V +LLQ Q + L RLE ++ R ++ +K L+ + P+ + FF
Sbjct: 307 RRVKAVGELLQSQLRIGLNRLERLIHDRLSMLTTKSFKKRKKLTTLINAKPINECLKEFF 366
Query: 370 GLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEG 429
G LSQ +D+TNPL +++H R+L+ LGPGGL+ A +RDIH SHYGRICPI+T EG
Sbjct: 367 GSSQLSQFMDQTNPLAELIHKRRLTILGPGGLSRDRAGCAVRDIHPSHYGRICPIETPEG 426
Query: 430 INVGLIGSLAIHARIGRWGSIESPFFEISER--SKRIHMLYLSPSRDEYYMIATGNYLAL 487
N GL+GSL HA + ++G IE+PF+++ + K + ++YL+ ++ Y IA + L
Sbjct: 427 QNAGLVGSLTTHAHLNQYGFIETPFYKVEKGYIQKELGIIYLTADEEDQYRIAAADVLIN 486
Query: 488 NQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSN 547
+ + RYRQEF+T +Q+ +I Q FS+ SLIPF+EH+DANRALM SN
Sbjct: 487 ETNKIIGEDISVRYRQEFITTKIDQIDFIAISPLQTFSVSTSLIPFLEHDDANRALMGSN 546
Query: 548 MQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL-FGSGETLSV 606
MQRQAVPL +EK +VGTGLE QVA DS + I + EG + + I + +G+ ++
Sbjct: 547 MQRQAVPLLHAEKPLVGTGLEFQVAKDSRRVLINKSEGLVKRVTGDHICIQTDTGKEINY 606
Query: 607 PLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYN 666
L+ Y+RSN++TC+ Q+ V G+ +K+GQILAD AT GEL+LG+N+LVAYMPWEGYN
Sbjct: 607 TLIKYQRSNQDTCITQRPIVFEGERVKKGQILADDTATDKGELALGQNLLVAYMPWEGYN 666
Query: 667 SEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLV 726
EDA+LI++RLVYED+YTS HI KYE +T T G E IT +IP++ + LRNLD+ G+V
Sbjct: 667 YEDAILINERLVYEDVYTSIHIEKYETETRQTKLGIEEITREIPNVNEYSLRNLDEKGIV 726
Query: 727 ILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVI 786
+GSW++ GDILVGK+ P+ ES PE +LL+AI G + ++T L++P G +GR++
Sbjct: 727 SVGSWIKGGDILVGKVAPKA--ESDQPPEGKLLKAIFGEKNRDVRDTSLRMPSGEKGRIV 784
Query: 787 DVRWLHKKGGSGYNPET------IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMP 840
DVR ++ G P + IYI QKR+I+VGDK+AGRHGNKGI+SKIL RQDMP
Sbjct: 785 DVRIFIREFGEMLYPGANTANTIVRIYIAQKRKIQVGDKMAGRHGNKGIISKILPRQDMP 844
Query: 841 YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLV 900
YL DG P+D++ NPLGVPSRMNVGQ++EC LG A + L +++ PFDER+ ++ASR +
Sbjct: 845 YLPDGTPIDIILNPLGVPSRMNVGQVYECLLGWAAEHLGVRFKLIPFDERFGKQASRTFI 904
Query: 901 FSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHG 960
+L +A + T+ W+F +PGK ++FDGRTG F+ P+++G Y+LKL+H VDDKIH
Sbjct: 905 HEKLKEAKELTNKNWLFNSNHPGKIQLFDGRTGESFDNPIMVGKAYMLKLVHLVDDKIHA 964
Query: 961 RSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVL 1020
RS+G Y+L+TQQPL G+A+QGGQR GEMEVWALE FG A+ LQE+LT KSD + R E L
Sbjct: 965 RSTGPYSLITQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQEILTIKSDDMLGRNEAL 1024
Query: 1021 GTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
+ G I +P PESF++L+REL++L L++
Sbjct: 1025 KAIVKGKAIPRP-GIPESFKVLMRELQALCLDV 1056
>gi|11467788 beta subunit of RNA polymerase [Nephroselmis olivacea]
gb|AAD54810.1|AF137379_33 (AF137379) beta subunit of RNA polymerase [Nephroselmis olivacea]
Length = 1109
Score = 895 bits (2287), Expect = 0.0
Identities = 479/1098 (43%), Positives = 699/1098 (63%), Gaps = 60/1098 (5%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
LP L IQ + F F++RGL EL + T L Y+L P + ++AVY
Sbjct: 17 LPDLISIQRDSFLLFLERGLATELSHVTPL--TGSHFRITLCSHGYRLKRPKVSIQEAVY 74
Query: 72 ESLTYSSELYVSAGLIWKN--SKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQS 129
++ +YS+ LYV+ N ++ Q Q++++G+IPLM S G I+NG R+V+NQI++S
Sbjct: 75 QATSYSAALYVNVETNQSNLGTQETQIQSVWMGDIPLMTSRGHFIINGSSRVVVNQIVRS 134
Query: 130 PGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGS 189
PGIY++ +D K ++ +IIS+ G + LE D IW R+ + +KISIL++ AMG
Sbjct: 135 PGIYFKEMIDQKHRRMFQASIISNRGSWVRLETDVDGMIWVRMDKAKKISILIVLEAMGL 194
Query: 190 NLNEILENVCYPEIFLSFLNDKEEKKIG----------SKESAILEFYRQFACVGGDPVF 239
+ I ++ PE L KK S A+ Y + + P
Sbjct: 195 SKKTIFRSLKSPEFLFKALQQLLAKKRWQDKVYELIPQSTTDALFHLYTKLS--PDKPGN 252
Query: 240 PESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKF 298
+ R L +K +R ++G +GR +N++L L +P++ L P D L A D+LIG+++
Sbjct: 253 TLTARRVLYEKLMDAKRYDVGLVGRVKLNKKLKLPVPEHVHTLRPVDFLAATDYLIGLEY 312
Query: 299 RMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTS 358
G +DD++HLKN+R+R +L+Q Q + L RLE ++G I R +P +L+
Sbjct: 313 GRGQVDDIDHLKNRRVRCAGELIQSQLRIGLNRLERTMQGRIS---RPGELPGMSSLMNP 369
Query: 359 TPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHY 418
P+ FFG +PLSQ +D+TNPL ++ H R+LS LGPGGL+ A +R+IH S Y
Sbjct: 370 KPVMAALREFFGSNPLSQFMDQTNPLAELTHKRRLSSLGPGGLSQDRAGMAVREIHPSQY 429
Query: 419 GRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHM--LYLSPSRDEY 476
GRICPI+T EG N GLIGS+A +AR+ ++G +E PF+++ E ++L+ +++
Sbjct: 430 GRICPIETPEGPNAGLIGSMATYARLNQYGGLECPFYQVVEGKVLYEFGPIFLTAEQEDQ 489
Query: 477 YMIATGNYL-------ALNQGNQE----------EQIVPARYRQEFLTIAWEQVHLRSIF 519
+ G+ L A+ +G ++ + R RQEF T ++ V+ I
Sbjct: 490 VTVVAGDILDQRKLMVAVAEGRDPLDPAVRPTLPDRPLILRSRQEFHTGSFRDVNYVGIA 549
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
Q S+ SLIPF+EH+DANRALM SNMQRQAVPL ++E I+GTGLE QVA D+G +
Sbjct: 550 PTQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPIIGTGLEAQVAADAGGVV 609
Query: 580 IAEHEGKIIYKDTNKIVLFGSGETLSVP-----------LVIYRRSNKNTCMHQKSQVQR 628
+ EG ++Y D +IV+ S L++ L +Y+RSN+ TC+HQ+ +
Sbjct: 610 QSPFEGIVVYVDATRIVVSTSKSKLALSKKRKIHESNVFLQVYQRSNQGTCIHQRPIIPL 669
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
+ RG +LADG++T GG+++LGKN+LVAYMPWEGYN EDA+LIS+RL+Y+D+YTS HI
Sbjct: 670 HTPVIRGDLLADGSSTSGGQIALGKNLLVAYMPWEGYNFEDAILISERLIYDDLYTSLHI 729
Query: 689 RKYEIQTHVTSNGPERITNKIPHLEVHLL--RNLDKNGLVILGSWVEAGDILVGKLTPQM 746
+YE++T T GPE IT I H L R LD+ G+V+ G+WVE GD+L+GK+TP+
Sbjct: 730 ERYEVETQHTKLGPEEITKSIVHETDDKLPYRWLDERGIVMRGAWVEPGDVLIGKITPKE 789
Query: 747 AKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHI 806
KE + PE RL+ AI G + ++T L++P G RGRV+DVR + + + + +H+
Sbjct: 790 EKELT--PELRLVYAIFGKRPKGFRDTSLRVPQGVRGRVVDVRMIRDE-----DTKVVHV 842
Query: 807 YILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQI 866
Y+ Q+R+I+VGDK+AGRHGNKGIVS+I+ RQDMPYLQDG PVDMV NPLGVPSRMNVGQ+
Sbjct: 843 YVCQQRQIQVGDKMAGRHGNKGIVSRIVPRQDMPYLQDGTPVDMVLNPLGVPSRMNVGQV 902
Query: 867 FECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSR 926
FEC LGLAG L + ++ FDE Y EASR LV+++L++AS+ T + W+F+P +PGKSR
Sbjct: 903 FECLLGLAGQRLGQQLKVRAFDEMYGAEASRHLVYNKLHEASEVTGHHWLFDPNHPGKSR 962
Query: 927 IFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVG 986
+ DGRTG F+Q V IG Y+LKLIHQVDDKIH R++G Y+L+TQQPL GR+K+GGQR+G
Sbjct: 963 LIDGRTGDMFDQAVTIGQAYMLKLIHQVDDKIHARATGPYSLITQQPLGGRSKRGGQRLG 1022
Query: 987 EMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVREL 1046
EMEVWA EGFG A+ LQE+LT KSD ++ R E++ + G + + + PESF++++REL
Sbjct: 1023 EMEVWAFEGFGAAYTLQELLTVKSDDMQGRNEIMSAMVQGRQLPE-MGTPESFKVMIREL 1081
Query: 1047 RSLALELNHFLVSEKNFR 1064
++L L++ + S+ F+
Sbjct: 1082 QALCLDIGIYHRSKMTFK 1099
>sp|P08036|RPOB_SAPOF DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||S00933 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - common
soapwort chloroplast (fragment)
emb|CAA30075.1| (X07026) RNA polymerase [Saponaria officinalis]
Length = 417
Score = 772 bits (1973), Expect = 0.0
Identities = 371/417 (88%), Positives = 392/417 (93%)
Query: 559 EKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSVPLVIYRRSNKNT 618
EKCIVGTGLERQ ALDSG LAI EHEGKIIY DT+KI+L G+G+T S+PLV+Y+R NKNT
Sbjct: 1 EKCIVGTGLERQAALDSGVLAIVEHEGKIIYTDTDKIILSGNGDTHSIPLVLYQRFNKNT 60
Query: 619 CMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLV 678
CMHQ ++ GKCIK+GQILADGAATVGGEL LGKNVLVAYMPWEGYN EDAVLIS+RLV
Sbjct: 61 CMHQNPRIPGGKCIKKGQILADGAATVGGELGLGKNVLVAYMPWEGYNFEDAVLISERLV 120
Query: 679 YEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDIL 738
YEDIYTSFHIRKYEIQT+VTS GPER+T++IPHLE HLLRNLDKNG+V LGSWVE GDIL
Sbjct: 121 YEDIYTSFHIRKYEIQTYVTSQGPERVTSEIPHLEAHLLRNLDKNGIVGLGSWVETGDIL 180
Query: 739 VGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSG 798
VGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRW+ KKGGS
Sbjct: 181 VGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSN 240
Query: 799 YNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVP 858
YNPETIHIYILQKREIKVGDKVAGRHGNKGI+SKIL RQDMPYLQDGRPVDMVFNPLGVP
Sbjct: 241 YNPETIHIYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVP 300
Query: 859 SRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFE 918
SRMNVGQIFECSLGLAG +LDRHYRI PFDERYE EASRKLVFSELYQASKQT+ PWIFE
Sbjct: 301 SRMNVGQIFECSLGLAGGLLDRHYRITPFDERYEHEASRKLVFSELYQASKQTAKPWIFE 360
Query: 919 PEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLK 975
PEYPGKSRIFDGRTG PFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPL+
Sbjct: 361 PEYPGKSRIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLR 417
>sp|P36440|RPOB_HETCA DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||S41915 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Heterosigma
carterae chloroplast
emb|CAA53450.1| (X75815) RNA polymerase beta subunit [Heterosigma carterae]
Length = 1116
Score = 752 bits (1920), Expect = 0.0
Identities = 440/1081 (40%), Positives = 645/1081 (58%), Gaps = 59/1081 (5%)
Query: 4 VGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTD-QEIEFQLFVETYQLVEP 62
V N ++ LP +IQ FC F+ +GL+ EL I D + + ++ +L+ + + L
Sbjct: 2 VNNTFITKLPDFLEIQRSSFCWFLLKGLSYELNSLSPIIDVNVKRVKLKLYPQEFVLKPG 61
Query: 63 SIKEKDAVYESLTYSSELYVSAGLIW----------KNSKNIQEQTIFIGNIPLMNSLGT 112
A TY +++ A +I+ KN ++ +FIG IPLM S G+
Sbjct: 62 RTTPICAKQNDSTYGVRIFLPAEVIYCDTESKYPTKKNRLEDIKEKVFIGQIPLMTSTGS 121
Query: 113 SIVNGI--YRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWA 170
IVNG YR NQI++ PG+YY++E + I V T TII+ G L+ E D+ W
Sbjct: 122 FIVNGCEGYR---NQIIRCPGLYYKAEFLNNNI-VSTVTIIAQRGSWLKFEFDKNG-YWV 176
Query: 171 RVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQF 230
R+ +++KISI + N EIL + + L K+ ++I + +
Sbjct: 177 RIDKEKKISIFDFLEGLNINDEEILSGL---KSIAPLLKYKKTQEILKRNN--------- 224
Query: 231 ACVGGDPVFPESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAA 290
DP L ++K LG IGR N+NRRL L+I L DI
Sbjct: 225 -----DP----DLKNLIEKITDPNSYSLGIIGRLNLNRRLGLNISTRVHTLTIHDIFGII 275
Query: 291 DHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMV--RGTICGAIRYKL 348
D + R DD++ L+N+RIR+V +L+ Q + L RLE + R G++R
Sbjct: 276 DFFLSA--RSFVPDDIDDLRNRRIRAVGELITSQCEIGLNRLERNILERTNFSGSVRI-- 331
Query: 349 IPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASF 408
P+ LV + P+ + + FF LS +D+TN L++ + R++S LGPGGL +
Sbjct: 332 --LPKTLVNARPIMSAIQEFFNSSQLSHYMDQTNLLSETANKRRISALGPGGLNADRVTV 389
Query: 409 RIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIH--- 465
RDIH + YGR+CPI+T EG NVGL+ +LA +ARI R G I++P+F + E K +
Sbjct: 390 AARDIHPTQYGRLCPIETPEGQNVGLVSTLASYARINRNGFIQTPYFRV-ENGKILTQQP 448
Query: 466 MLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQE-FLTIAWEQVHLRSIFSFQYF 524
++YL+ + E IA + G + + R++ + F+ + V S+ Q
Sbjct: 449 LIYLT-AEQENLKIAPADVKRDQDGYLVDDFIVTRFQSKNFIITPSKLVDFISVSEIQII 507
Query: 525 SIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHE 584
S+ ASLIPF+EH+DANRALM +NMQRQAVPL K IVGTG+E QVA DS + IA
Sbjct: 508 SVAASLIPFLEHDDANRALMGANMQRQAVPLLYPRKPIVGTGIESQVAFDSRLVNIATKP 567
Query: 585 GKIIYKDTNKIVLFG-SGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAA 643
G + Y + +I + GE ++ L+ YR SN++TC++Q+ V G+ IK GQ++ADG
Sbjct: 568 GIVKYVSSQQIDIKNIEGEKIAYKLIKYRPSNQDTCLNQRPLVWVGQSIKTGQVIADGPG 627
Query: 644 TVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPE 703
T GEL+LG+N+ VAYMPW+GYN EDA+L+SD+L ++++TS HI + E + T G +
Sbjct: 628 TQSGELALGQNLTVAYMPWQGYNYEDAILVSDKLDIQNLFTSIHIEECETEVQQTKTGEQ 687
Query: 704 RITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAIL 763
IT+ IP + +NLD+NG++ +G +V GDILVGK+TP+ E PE +LL+AI
Sbjct: 688 VITSDIPLVSEKNCKNLDENGIIKVGKYVYPGDILVGKITPK--GEIDQLPEAKLLKAIF 745
Query: 764 GIQVSTSKETCLKLPIGGRGRVIDVRWLHK-KGGSGYNPET-IHIYILQKREIKVGDKVA 821
G + +++ L++P G GRV+D++ K K G + + I ++I Q +++VGDK+A
Sbjct: 746 GFKTPDMRDSSLRVPGGLSGRVLDIKIFKKPKPGKVFGVGSKIRVFIAQISKLQVGDKIA 805
Query: 822 GRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRH 881
GRHGNKG++S+IL QDMP+L DG VD++ NPLGVPSRMNVGQIFEC LGLAGD L++
Sbjct: 806 GRHGNKGVISRILPHQDMPFLPDGTSVDIILNPLGVPSRMNVGQIFECLLGLAGDQLNKR 865
Query: 882 YRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVI 941
++I PFDE Y+ EASR L+ +L A+K+ + PW+F PGK + DGRTG F+ PV+
Sbjct: 866 FKILPFDEMYQNEASRILINQKLKDAAKKQNKPWLFSAYSPGKILLSDGRTGEKFDNPVL 925
Query: 942 IGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHI 1001
+G YILKL H V+DKIH RS+G Y+L+TQQP+ G+++ GGQR GEMEVWALE FG A+
Sbjct: 926 VGRSYILKLAHLVEDKIHARSTGPYSLITQQPVGGKSQNGGQRFGEMEVWALEAFGAAYT 985
Query: 1002 LQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEK 1061
LQE+LT KSD ++ R +VL + + G I K PESF++L+REL +L L++ + V +
Sbjct: 986 LQELLTIKSDDMQGRDDVLNSIVCGQEIPKS-SIPESFKVLMRELNALGLDITTYKVMFE 1044
Query: 1062 N 1062
N
Sbjct: 1045 N 1045
>gi|11467566 RNA polymerase beta-chain [Odontella sinensis]
sp|P49466|RPOB_ODOSI DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||S78371 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Odontella
sinensis chloroplast
emb|CAA91744.1| (Z67753) RNA polymerase beta-chain [Odontella sinensis]
Length = 1379
Score = 735 bits (1876), Expect = 0.0
Identities = 385/813 (47%), Positives = 532/813 (65%), Gaps = 15/813 (1%)
Query: 258 LGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSV 317
LG+IGR +N RLNL + + DI D L+ + T DD++HLKN+R+RSV
Sbjct: 549 LGKIGRFQINNRLNLKLNNRIYTITYEDIFAILDCLVTLSISKTTGDDIDHLKNRRVRSV 608
Query: 318 ADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQV 377
+LLQ+ F + RL + I ++ + N++ +T FFG LSQ
Sbjct: 609 GELLQNLFRVGFQRLVRKLGSQINKRESGQI--SSFNIIGAT-----VREFFGSSQLSQY 661
Query: 378 LDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGS 437
+D+TNPL+ + H R++S LGPGGL SF +RDIH SHYGRICPI+T EG NVGLI S
Sbjct: 662 MDQTNPLSSLTHRRRISGLGPGGLDRDRISFAVRDIHPSHYGRICPIETPEGPNVGLIAS 721
Query: 438 LAIHARIGRWGSIESPFFEISERS--KRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQ 495
L AR+ + G IE+PF+ + K + +YL+ +++Y IA + ++ +
Sbjct: 722 LTTCARVNKLGFIETPFWRVINGKVIKTGNPIYLTADIEDFYKIAPADISTNSKNYLTQN 781
Query: 496 IVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPL 555
++P RY+Q+F+T++ QV SI Q S+ SLIPF EH+DANRALM SNMQRQ+VPL
Sbjct: 782 LIPVRYKQDFITVSPFQVDFISISPIQVVSVATSLIPFFEHDDANRALMGSNMQRQSVPL 841
Query: 556 SQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFG--SGETLSVPLVIYRR 613
S+K IVGTGLE Q+A+DSG A+ G I++ T ++ SG L L Y+R
Sbjct: 842 MLSQKPIVGTGLENQIAIDSGMTINAQGAG-IVHSVTADYIIVKEYSGRKLKYILQKYQR 900
Query: 614 SNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLI 673
SN+ TC++ + V +G+ IK GQIL DG EL+LG+NVLVAYMPW+GYN EDA+LI
Sbjct: 901 SNQETCINHRPIVWKGEKIKSGQILTDGPGITNNELALGQNVLVAYMPWQGYNFEDAILI 960
Query: 674 SDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVE 733
++RLVYED++TS HI +Y+I+ + E+IT IP+L ++NL+ +G+V LG++V+
Sbjct: 961 NERLVYEDVFTSIHIERYDIEIEQDDDVSEQITKNIPNLSFSEIQNLNDDGIVALGTFVK 1020
Query: 734 AGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHK 793
GDILVGK+ + +S PE +LLRAI G + ++T ++P G GRV+D ++
Sbjct: 1021 PGDILVGKIIAK--NDSEQLPEAKLLRAIFGAKAKGVRDTSFRMPKGKYGRVVDRVTFNR 1078
Query: 794 KGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFN 853
K Y E I ++I Q R+IKVGDK+AGRHGNKGI+S+IL RQDMP+L DG PVD++ N
Sbjct: 1079 KTKLAYKFEKIQVFIAQIRKIKVGDKIAGRHGNKGIISRILPRQDMPFLPDGTPVDIILN 1138
Query: 854 PLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSN 913
PLGVPSRMNVGQ++EC LG+AG L+R ++I PFDE Y E SR L+ +L QAS +
Sbjct: 1139 PLGVPSRMNVGQLYECLLGIAGHKLNRRFKILPFDEMYGPEVSRILINKKLRQASIENDE 1198
Query: 914 PWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQP 973
W+F P PGK + DGRTG FE P+ +GN Y+LKLIH VDDK+H R++G Y+L+TQQP
Sbjct: 1199 AWLFNPYSPGKMVLIDGRTGKEFENPITVGNAYMLKLIHLVDDKMHARATGPYSLITQQP 1258
Query: 974 LKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPV 1033
L G+A+ GGQR GEMEVWALEGFG A L+E+LT KSD ++ R E L + G I K
Sbjct: 1259 LGGKAQHGGQRFGEMEVWALEGFGAAFTLKELLTIKSDDMQGRNETLNAIVKGQLIPKS- 1317
Query: 1034 DAPESFRLLVRELRSLALELNHFLVSEKNFRIH 1066
PESF++L++ELRS+ L+++ + + N H
Sbjct: 1318 GVPESFKVLLQELRSIGLDMSTYKIENYNLNQH 1350
Score = 81.9 bits (199), Expect = 4e-14
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 1/133 (0%)
Query: 10 STLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDA 69
+ LP ++Q FC FI +GL +EL F +I D E++LF + Y LV+P A
Sbjct: 5 TALPDFIEMQRVSFCWFIAQGLNDELTMFSRIHDFSYNTEYRLFGQEYSLVKPVYTIVRA 64
Query: 70 VYESLTYSSELYVSAGLIWKNSKNIQEQTIF-IGNIPLMNSLGTSIVNGIYRIVINQILQ 128
+ YS +L + + K +++ F I N+PLM + T ++NG R++++QI++
Sbjct: 65 KKLAANYSVQLVIPLEVRNKKLNSVRYFGQFTIINLPLMTTTATFVINGCERVIVSQIIR 124
Query: 129 SPGIYYQSELDHK 141
SPGIY++ +H+
Sbjct: 125 SPGIYFEKNKNHR 137
>gb|AAF60349.1|AF242549_1 (AF242549) DNA-dependent RNA polymerase beta subunit [Amycolatopsis
mediterranei]
Length = 1167
Score = 718 bits (1834), Expect = 0.0
Identities = 412/1066 (38%), Positives = 625/1066 (57%), Gaps = 62/1066 (5%)
Query: 30 GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKE-KDAVYESLTYSSELYVSAGLIW 88
GL E L + IED + + V+ SI+E KD + +TY++ L+V+A +
Sbjct: 78 GLEEVLNEISPIEDFSGSMSLSFSAPRFDEVKASIEECKD---KDMTYAAPLFVTAEFVN 134
Query: 89 KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGIS-VYT 147
N+ I+ QT+F+G+ P+M GT ++NG R+V++Q+++SPG+YY ++D V++
Sbjct: 135 NNTGEIKSQTVFLGDFPVMTDKGTFVINGTERVVVSQLVRSPGVYYSKDIDKTSDKDVFS 194
Query: 148 GTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSF 207
+I G LE ++D++ + R+ RK++ + VL A+G I E + E L+
Sbjct: 195 VRVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEAIRERFSFSETLLAT 254
Query: 208 LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNM 266
L E+ + A+L+ YR+ G+P ES L+ FF+ +R +L ++GR +
Sbjct: 255 L---EKDHTAGTDEALLDIYRKLR--PGEPPTKESAQTLLENLFFKAKRYDLAKVGRYKV 309
Query: 267 NRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTL------------DDMNHLKNKRI 314
N++L L P N L DI+T ++L+ + + DD++H N+RI
Sbjct: 310 NKKLGLSTPIENGTLTEEDIVTIIEYLVRLHAGEDKMTAANNTEIPVETDDIDHFGNRRI 369
Query: 315 RSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPL 374
R+V +L+Q+Q + L R E +VR + + TPQ L+ P+ + FFG L
Sbjct: 370 RTVGELIQNQIRVGLSRTERVVRERMTTQDVEAI--TPQTLINIRPIGAAIKEFFGTSQL 427
Query: 375 SQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGL 434
SQ + +TNP+ + H R+L+ LGPGGL+ A +RD+H SHYGR+CPI+T EG N+GL
Sbjct: 428 SQFMQQTNPIDGLTHKRRLNALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPEGPNIGL 487
Query: 435 IGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ-E 493
IGSL +AR+ +G IE+P+ ++ E + YL+ ++ ++ A N + G E
Sbjct: 488 IGSLCSYARVNPFGFIETPYRKVVEGRVTDQIDYLTADEEDRFVKAQANAPISDDGTFIE 547
Query: 494 EQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAV 553
++++ R E I + + Q SI ++IPF+EH+DANRALM +NMQRQAV
Sbjct: 548 DRVMARRKGGEVELIDPLDIDYMDVSPRQMVSIATAMIPFLEHDDANRALMGANMQRQAV 607
Query: 554 PLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVIYR 612
PL +S+ VGTG+E + A+DSG + +AE G + + I V+ G S L +R
Sbjct: 608 PLLRSQAPYVGTGVELRAAIDSGDMLVAEQSGVVEELSADLITVMHDDGTRKSYSLYKFR 667
Query: 613 RSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVL 672
RSN TC + + V G I+ GQ++ADG +T GE++LGKN+LVA MPWEG+N EDA++
Sbjct: 668 RSNHGTCFNHRPIVNEGDRIEAGQVIADGPSTENGEVALGKNLLVAVMPWEGHNYEDAII 727
Query: 673 ISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWV 732
+S+RLV +D+ TS HI ++EI T G E IT IP++ +L +LD+ G++ +G+ V
Sbjct: 728 LSERLVQDDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLADLDERGIIRIGAEV 787
Query: 733 EAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLH 792
GDILVGK+TP+ E+ PE+RLLRAI G + ++T LK+P G G+VI +R
Sbjct: 788 RDGDILVGKVTPK--GETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGIRVFS 845
Query: 793 KKGGSGYNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVD 849
++ P E + +Y+ QKR+I+ GDK+AGRHGNKG++ KIL +DMP+++DG PVD
Sbjct: 846 REDDDELPPGVNELVRVYVAQKRKIQPGDKLAGRHGNKGVIGKILPVEDMPFMEDGTPVD 905
Query: 850 MVFNPLGVPSRMNVGQIFECSLG--------LAGDV-----LDRHYR-IAP--------F 887
++ N GVP RMN+GQI E LG + GD L R +AP F
Sbjct: 906 IILNTHGVPRRMNIGQILELHLGWLASQGWTIEGDPDWAKNLSAELRDVAPGTNTATPVF 965
Query: 888 DERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYI 947
D E+E + L A+K + E GK+ +FDGR+G P+ PV +G YI
Sbjct: 966 DGAKEEE------LTGLLSATKPNRDGERMVKE-NGKANLFDGRSGEPYPYPVAVGYMYI 1018
Query: 948 LKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLT 1007
LKL H VDDKIH RS+G Y+++TQQPL G+A+ GGQR GEME WA++ +G A+ LQE+LT
Sbjct: 1019 LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLT 1078
Query: 1008 YKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
KSD + R +V + G I +P PESF++L++EL+SL L +
Sbjct: 1079 IKSDDVVGRVKVYEAIVKGENIPEP-GIPESFKVLLKELQSLCLNV 1123
>emb|CAB77428.1| (AL160431) DNA-directed RNA polymerase beta chain [Streptomyces
coelicolor A3(2)]
Length = 1161
Score = 716 bits (1828), Expect = 0.0
Identities = 411/1062 (38%), Positives = 629/1062 (58%), Gaps = 52/1062 (4%)
Query: 30 GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKE-KDAVYESLTYSSELYVSAGLIW 88
GL E + IED + ++ + SI E KD TY++ L+V+A
Sbjct: 73 GLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKD---RDFTYAAPLFVTAEFTN 129
Query: 89 KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGIS-VYT 147
+ I+ QT+F+G+ PLM + GT ++NG R+V++Q+++SPG+Y+ S +D +++
Sbjct: 130 NETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSIDKTSDKDIFS 189
Query: 148 GTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSF 207
II G LE+EID++ + R+ RK+K S+ VL A+G +ILE E +
Sbjct: 190 AKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEFGEYESMRAT 249
Query: 208 LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNM 266
L E+ ++ A+L+ YR+ G+P E+ L+ +F +R +L ++GR +
Sbjct: 250 L---EKDHTQGQDDALLDIYRKLR--PGEPPTREAAQTLLENLYFNPKRYDLAKVGRYKV 304
Query: 267 NRRLNLDIPQNNTFLLPRDILTAADHLI-------------GMKFRMGTLDDMNHLKNKR 313
N++L D P + L D++ +L+ G + + T DD++H N+R
Sbjct: 305 NKKLGADEPLDAGVLTTDDVIATIKYLVKLHAGETETVGESGREIVVET-DDIDHFGNRR 363
Query: 314 IRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHP 373
IR+V +L+Q+Q L R+E +VR + + TPQ L+ P+ + + FFG
Sbjct: 364 IRNVGELIQNQVRTGLARMERVVRERMTTQDVEAI--TPQTLINIRPVVASIKEFFGTSQ 421
Query: 374 LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVG 433
LSQ +D+ NPL+ + H R+L+ LGPGGL+ A F +RD+H SHYGR+CPI+T EG N+G
Sbjct: 422 LSQFMDQNNPLSGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIG 481
Query: 434 LIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNY-LALNQGNQ 492
LIGSLA + RI +G IE+P+ ++ E + YL+ ++ ++IA N L +
Sbjct: 482 LIGSLASYGRINPFGFIETPYRKVVEGQVTDDVDYLTADEEDRFVIAQANAALGDDMRFA 541
Query: 493 EEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQA 552
E +++ R E + + V + Q S+ ++IPF+EH+DANRALM +NM RQA
Sbjct: 542 EARVLVRRRGGEVDYVPGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQA 601
Query: 553 VPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGS-GETLSVPLVIY 611
VPL +SE +VGTG+E + A D+G + AE G + + I G ++ L +
Sbjct: 602 VPLIKSESPLVGTGMEYRSAADAGDVVKAEKAGVVQEVSADYITTTNDDGTYITYRLAKF 661
Query: 612 RRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
RSN+ T ++QK V G I GQ+LADG AT GE++LGKN+LVA+MPWEG+N EDA+
Sbjct: 662 SRSNQGTSVNQKVIVAEGDRIIEGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDAI 721
Query: 672 LISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSW 731
++S RLV +D+ +S HI ++E+ T GPE IT IP++ +L +LD+ G++ +G+
Sbjct: 722 ILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAE 781
Query: 732 VEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWL 791
V AGDILVGK+TP+ E+ PE+RLLRAI G + ++T LK+P G G+VI VR
Sbjct: 782 VVAGDILVGKVTPK--GETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVF 839
Query: 792 HKKGGSGYNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPV 848
++ G P + + +Y+ QKR+I GDK+AGRHGNKG++SKI +DMP+L+DG PV
Sbjct: 840 DREEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKINPIEDMPFLEDGTPV 899
Query: 849 DMVFNPLGVPSRMNVGQIFECSLG-LAGDVLDRHYRIAPFDERYEQEASRKL-----VFS 902
D++ NPL VPSRMN GQ+ E LG LA D + +R + + K+ V +
Sbjct: 900 DIILNPLAVPSRMNPGQVLEIHLGWLASRGWDVSGLAEEWAQRLQVIGADKVEPGTNVAT 959
Query: 903 ELYQASKQTSNPWIFEPEYP-----------GKSRIFDGRTGTPFEQPVIIGNPYILKLI 951
++ +++ + + P GK+R+FDGR+G PF +P+ +G YILKL
Sbjct: 960 PVFDGAREDELAGLLQHTIPNRDGERMVLPSGKARLFDGRSGEPFPEPISVGYMYILKLH 1019
Query: 952 HQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSD 1011
H VDDK+H RS+G Y+++TQQPL G+A+ GGQR GEMEVWALE +G A+ LQE+LT KSD
Sbjct: 1020 HLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSD 1079
Query: 1012 HIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
+ R +V + G I +P PESF++L++E++SL L +
Sbjct: 1080 DVTGRVKVYEAIVKGENIPEP-GIPESFKVLIKEMQSLCLNV 1120
>emb|CAC30845.1| (AL583923) [beta] subunit of RNA polymerase [Mycobacterium leprae]
Length = 1178
Score = 713 bits (1821), Expect = 0.0
Identities = 405/1068 (37%), Positives = 631/1068 (58%), Gaps = 61/1068 (5%)
Query: 30 GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKE-KDAVYESLTYSSELYVSAGLIW 88
GL E L++ IED + + V+ ++E KD + +TY++ L+V+A I
Sbjct: 85 GLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVEECKD---KDMTYAAPLFVTAEFIN 141
Query: 89 KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGI-SVYT 147
N+ I+ QT+F+G+ P+M GT I+NG R+V++Q+++SPG+Y+ +D ++++
Sbjct: 142 NNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHS 201
Query: 148 GTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSF 207
+I G LE ++D++ + R+ RK++ + VL A+G +I E + EI S
Sbjct: 202 VKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRST 261
Query: 208 LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNM 266
L +++ +G+ E A+L+ YR+ G+P ES L+ FF++ R +L +GR +
Sbjct: 262 L--EKDNTVGTDE-ALLDIYRKLR--PGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 316
Query: 267 NRRLNLDIPQ--NNTFLLPRDILTAADHLIGMKFRMGTL------------DDMNHLKNK 312
N++L L + ++ L D++ ++L+ + T+ DD++H N+
Sbjct: 317 NKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNR 376
Query: 313 RIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
R+R+V +L+Q+Q + + R+E +VR + + TPQ L+ P+ + FFG
Sbjct: 377 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAI--TPQTLINIRPVVAAIKEFFGTS 434
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+ NPL+ + H R+LS LGPGGL+ A +RD+H SHYGR+CPI+T EG N+
Sbjct: 435 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 494
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGN- 491
GLIGSL+++AR+ +G IE+P+ ++ + + YL+ ++ +++A N G
Sbjct: 495 GLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRF 554
Query: 492 QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQ 551
E +++ R E +A +V + Q S+ ++IPF+EH+DANRALM +NMQRQ
Sbjct: 555 LEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ 614
Query: 552 AVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVI 610
AVPL +SE +VGTG+E + A+D+G + +AE G I + I V+ G + +
Sbjct: 615 AVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRK 674
Query: 611 YRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDA 670
+ RSN TC +Q V G ++ GQ++ADG T GE++LGKN+LVA MPWEG+N EDA
Sbjct: 675 FARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDA 734
Query: 671 VLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGS 730
+++S+RLV ED+ TS HI ++EI T G E IT IP++ +L +LD+ G+V +G+
Sbjct: 735 IILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGA 794
Query: 731 WVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRW 790
V GDILVGK+TP+ E+ PE+RLLRAI G + ++T LK+P G G+VI +R
Sbjct: 795 EVRDGDILVGKVTPK--GETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRV 852
Query: 791 LHKKGG----SGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGR 846
+ +G N E + +Y+ QKR+I GDK+AGRHGNKG++ KIL +DMP+L DG
Sbjct: 853 FSHEDDDELPAGVN-ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGT 911
Query: 847 PVDMVFNPLGVPSRMNVGQIFECSLG----------LAGDVLDRHYRIAPFDERYEQEAS 896
PVD++ N GVP RMNVGQI E LG +AG + D + E A
Sbjct: 912 PVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNL---PEELLHAAP 968
Query: 897 RKLVFSELYQASKQTSNPWIFEPEYP-----------GKSRIFDGRTGTPFEQPVIIGNP 945
++V + ++ +K+ + P GK+ +FDGR+G PF PV +G
Sbjct: 969 NQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGYM 1028
Query: 946 YILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEM 1005
YI+KL H VDDKIH RS+G Y+++TQQPL G+A+ GGQR GEME WA++ +G A+ LQE+
Sbjct: 1029 YIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1088
Query: 1006 LTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
LT KSD R +V + G I +P PESF++L++EL+SL L +
Sbjct: 1089 LTIKSDDTVGRVKVYEAIVKGENIPEP-GIPESFKVLLKELQSLCLNV 1135
>sp|P47766|RPOB_MYCTU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
Length = 1178
Score = 711 bits (1815), Expect = 0.0
Identities = 402/1065 (37%), Positives = 633/1065 (58%), Gaps = 55/1065 (5%)
Query: 30 GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKE-KDAVYESLTYSSELYVSAGLIW 88
GL E L++ IED + + V+ + E KD + +TY++ L+V+A I
Sbjct: 85 GLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKD---KDMTYAAPLFVTAEFIN 141
Query: 89 KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHK-GISVYT 147
N+ I+ QT+F+G+ P+M GT I+NG R+V++Q+++SPG+Y+ +D ++++
Sbjct: 142 NNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHS 201
Query: 148 GTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSF 207
+I G LE ++D++ + R+ RK++ + VL A+G +I+E + EI S
Sbjct: 202 VKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRST 261
Query: 208 LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNM 266
L +++ +G+ E A+L+ YR+ G+P ES L+ FF++ R +L +GR +
Sbjct: 262 L--EKDNTVGTDE-ALLDIYRKLR--PGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 316
Query: 267 NRRLNLDI--PQNNTFLLPRDILTAADHLIGMKFRMGTL------------DDMNHLKNK 312
N++L L + P ++ L D++ ++L+ + T+ DD++H N+
Sbjct: 317 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 376
Query: 313 RIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
R+R+V +L+Q+Q + + R+E +VR + + TPQ L+ P+ + FFG
Sbjct: 377 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAI--TPQTLINIRPVVAAIKEFFGTS 434
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+ NPL+ + H R+LS LGPGGL+ A +RD+H SHYGR+CPI+T EG N+
Sbjct: 435 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 494
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGN- 491
GLIGSL+++AR+ +G IE+P+ ++ + ++YL+ ++ +++A N G
Sbjct: 495 GLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRF 554
Query: 492 QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQ 551
E +++ R E + +V + Q S+ ++IPF+EH+DANRALM +NMQRQ
Sbjct: 555 VEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ 614
Query: 552 AVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVI 610
AVPL +SE +VGTG+E + A+D+G + +AE G I + I V+ +G + +
Sbjct: 615 AVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRK 674
Query: 611 YRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDA 670
+ RSN TC +Q V G ++ GQ++ADG T GE++LGKN+LVA MPWEG+N EDA
Sbjct: 675 FARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDA 734
Query: 671 VLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGS 730
+++S+RLV ED+ TS HI ++EI T G E IT IP++ +L +LD+ G+V +G+
Sbjct: 735 IILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGA 794
Query: 731 WVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRW 790
V GDILVGK+TP+ E+ PE+RLLRAI G + ++T LK+P G G+VI +R
Sbjct: 795 EVRDGDILVGKVTPK--GETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRV 852
Query: 791 LHKKG----GSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGR 846
++ +G N E + +Y+ QKR+I GDK+AGRHGNKG++ KIL +DMP+L DG
Sbjct: 853 FSREDEDELPAGVN-ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGT 911
Query: 847 PVDMVFNPLGVPSRMNVGQIFECSLGL---AGDVLDRHYRIAPFDERYEQE----ASRKL 899
PVD++ N GVP RMN+GQI E LG +G +D + + R E +
Sbjct: 912 PVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAI 971
Query: 900 VFSELYQASKQTSNPWIFEPEYP-----------GKSRIFDGRTGTPFEQPVIIGNPYIL 948
V + ++ +++ + P GK+ +FDGR+G PF PV +G YI+
Sbjct: 972 VSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIM 1031
Query: 949 KLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTY 1008
KL H VDDKIH RS+G Y+++TQQPL G+A+ GGQR GEME WA++ +G A+ LQE+LT
Sbjct: 1032 KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI 1091
Query: 1009 KSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
KSD R +V + G I +P PESF++L++EL+SL L +
Sbjct: 1092 KSDDTVGRVKVYEAIVKGENIPEP-GIPESFKVLLKELQSLCLNV 1135
>pir||F70535 probable rpoB protein - Mycobacterium tuberculosis (strain H37RV)
emb|CAB09390.1| (Z95972) rpoB [Mycobacterium tuberculosis]
Length = 1172
Score = 711 bits (1815), Expect = 0.0
Identities = 402/1065 (37%), Positives = 633/1065 (58%), Gaps = 55/1065 (5%)
Query: 30 GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKE-KDAVYESLTYSSELYVSAGLIW 88
GL E L++ IED + + V+ + E KD + +TY++ L+V+A I
Sbjct: 79 GLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKD---KDMTYAAPLFVTAEFIN 135
Query: 89 KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHK-GISVYT 147
N+ I+ QT+F+G+ P+M GT I+NG R+V++Q+++SPG+Y+ +D ++++
Sbjct: 136 NNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHS 195
Query: 148 GTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSF 207
+I G LE ++D++ + R+ RK++ + VL A+G +I+E + EI S
Sbjct: 196 VKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRST 255
Query: 208 LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNM 266
L +++ +G+ E A+L+ YR+ G+P ES L+ FF++ R +L +GR +
Sbjct: 256 L--EKDNTVGTDE-ALLDIYRKLR--PGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 310
Query: 267 NRRLNLDI--PQNNTFLLPRDILTAADHLIGMKFRMGTL------------DDMNHLKNK 312
N++L L + P ++ L D++ ++L+ + T+ DD++H N+
Sbjct: 311 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 370
Query: 313 RIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
R+R+V +L+Q+Q + + R+E +VR + + TPQ L+ P+ + FFG
Sbjct: 371 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAI--TPQTLINIRPVVAAIKEFFGTS 428
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+ NPL+ + H R+LS LGPGGL+ A +RD+H SHYGR+CPI+T EG N+
Sbjct: 429 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 488
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGN- 491
GLIGSL+++AR+ +G IE+P+ ++ + ++YL+ ++ +++A N G
Sbjct: 489 GLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRF 548
Query: 492 QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQ 551
E +++ R E + +V + Q S+ ++IPF+EH+DANRALM +NMQRQ
Sbjct: 549 VEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ 608
Query: 552 AVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVI 610
AVPL +SE +VGTG+E + A+D+G + +AE G I + I V+ +G + +
Sbjct: 609 AVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRK 668
Query: 611 YRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDA 670
+ RSN TC +Q V G ++ GQ++ADG T GE++LGKN+LVA MPWEG+N EDA
Sbjct: 669 FARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDA 728
Query: 671 VLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGS 730
+++S+RLV ED+ TS HI ++EI T G E IT IP++ +L +LD+ G+V +G+
Sbjct: 729 IILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGA 788
Query: 731 WVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRW 790
V GDILVGK+TP+ E+ PE+RLLRAI G + ++T LK+P G G+VI +R
Sbjct: 789 EVRDGDILVGKVTPK--GETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRV 846
Query: 791 LHKKG----GSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGR 846
++ +G N E + +Y+ QKR+I GDK+AGRHGNKG++ KIL +DMP+L DG
Sbjct: 847 FSREDEDELPAGVN-ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGT 905
Query: 847 PVDMVFNPLGVPSRMNVGQIFECSLGL---AGDVLDRHYRIAPFDERYEQE----ASRKL 899
PVD++ N GVP RMN+GQI E LG +G +D + + R E +
Sbjct: 906 PVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAI 965
Query: 900 VFSELYQASKQTSNPWIFEPEYP-----------GKSRIFDGRTGTPFEQPVIIGNPYIL 948
V + ++ +++ + P GK+ +FDGR+G PF PV +G YI+
Sbjct: 966 VSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIM 1025
Query: 949 KLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTY 1008
KL H VDDKIH RS+G Y+++TQQPL G+A+ GGQR GEME WA++ +G A+ LQE+LT
Sbjct: 1026 KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI 1085
Query: 1009 KSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
KSD R +V + G I +P PESF++L++EL+SL L +
Sbjct: 1086 KSDDTVGRVKVYEAIVKGENIPEP-GIPESFKVLLKELQSLCLNV 1129
>gb|AAA21416.1| (L27989) RNA polymerase beta-subunit [Mycobacterium tuberculosis]
Length = 1177
Score = 703 bits (1794), Expect = 0.0
Identities = 400/1065 (37%), Positives = 633/1065 (58%), Gaps = 56/1065 (5%)
Query: 30 GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKE-KDAVYESLTYSSELYVSAGLIW 88
GL E L++ IED + + V+ + E KD + +TY++ L+V+A I
Sbjct: 85 GLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKD---KDMTYAAPLFVTAEFIN 141
Query: 89 KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHK-GISVYT 147
N+ I+ QT+F+G+ P+M GT I+NG R+V++Q+++SPG+Y+ +D ++++
Sbjct: 142 NNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHS 201
Query: 148 GTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSF 207
+I G LE ++D++ + R+ RK++ + VL A+G +I+E + EI S
Sbjct: 202 VKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRST 261
Query: 208 LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNM 266
L +++ +G+ E A+L+ YR+ G+P ES L+ FF++ R +L +GR +
Sbjct: 262 L--EKDNTVGTDE-ALLDIYRKLR--PGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 316
Query: 267 NRRLNLDI--PQNNTFLLPRDILTAADHLIGMKFRMGTL------------DDMNHLKNK 312
N++L L + P ++ L D++ ++L+ + T+ DD++H N+
Sbjct: 317 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 376
Query: 313 RIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
R+R+V +L+Q+Q + + R+E +VR + + TPQ L+ P+ + FFG
Sbjct: 377 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAI--TPQTLINIRPVVAAIKEFFGTS 434
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+ NPL+ + H R+LS LGPGGL+ A +RD+H SHYGR+CPI+T EG N+
Sbjct: 435 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 494
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGN- 491
GLIGSL+++AR+ +G IE+P+ ++ + ++YL+ ++ +++A N G
Sbjct: 495 GLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRF 554
Query: 492 QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQ 551
E +++ R E + +V + Q S+ ++IPF+EH+DANRALM +NMQRQ
Sbjct: 555 VEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ 614
Query: 552 AVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVI 610
AVPL +SE +VGTG+E + A+D+ T + ++ G I + I V+ +G + +
Sbjct: 615 AVPLVRSEAPLVGTGMELRAAIDAATSS-SQESGVIEEVSADYITVMHDNGTRRTYRMRK 673
Query: 611 YRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDA 670
+ RSN TC +Q V G ++ GQ++ADG T GE++LGKN+LVA MPWEG+N EDA
Sbjct: 674 FARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDA 733
Query: 671 VLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGS 730
+++S+RLV ED+ TS HI ++EI T G E IT IP++ +L +LD+ G+V +G+
Sbjct: 734 IILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGA 793
Query: 731 WVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRW 790
V GDILVGK+TP+ E+ PE+RLLRAI G + ++T LK+P G G+VI +R
Sbjct: 794 EVRDGDILVGKVTPK--GETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRV 851
Query: 791 LHKKG----GSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGR 846
++ +G N E + +Y+ QKR+I GDK+AGRHGNKG++ KIL +DMP+L DG
Sbjct: 852 FSREDEDELPAGVN-ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGT 910
Query: 847 PVDMVFNPLGVPSRMNVGQIFECSLGL---AGDVLDRHYRIAPFDERYEQEA----SRKL 899
PVD++ N GVP RMN+GQI E LG +G +D + + R E + +
Sbjct: 911 PVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAHANAI 970
Query: 900 VFSELYQASKQTSNPWIFEPEYP-----------GKSRIFDGRTGTPFEQPVIIGNPYIL 948
V + ++ +++ + P GK+ +FDGR+G PF PV +G YI+
Sbjct: 971 VSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIM 1030
Query: 949 KLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTY 1008
KL H VDDKIH RS+G Y+++TQQPL G+A+ GGQR GEME WA++ +G A+ LQE+LT
Sbjct: 1031 KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI 1090
Query: 1009 KSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
KSD R +V + G I +P PESF++L++EL+SL L +
Sbjct: 1091 KSDDTVGRVKVYEAIVKGENIPEP-GIPESFKVLLKELQSLCLNV 1134
>sp|P30760|RPOB_MYCLE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||S31145 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Mycobacterium
leprae
emb|CAA78668.1| (Z14314) RNA polymerase beta subunit [Mycobacterium leprae]
Length = 1179
Score = 691 bits (1764), Expect = 0.0
Identities = 399/1069 (37%), Positives = 625/1069 (58%), Gaps = 62/1069 (5%)
Query: 30 GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKE-KDAVYESLTYSSELYVSAGLIW 88
GL E L++ IED + + V+ ++E KD + +TY++ L+V+A I
Sbjct: 85 GLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVEECKD---KDMTYAAPLFVTAEFIN 141
Query: 89 KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGI-SVYT 147
N+ I+ QT+F+G+ P+M GT I+NG R+V++Q+++SPG+Y+ +D ++++
Sbjct: 142 NNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHS 201
Query: 148 GTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSF 207
+I G LE ++D++ + R+ RK++ + VL A+G +I E + EI S
Sbjct: 202 VKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRST 261
Query: 208 LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNM 266
L +++ +G+ E A+L+ YR+ G+P ES L+ FF++ R +L +GR +
Sbjct: 262 L--EKDNTVGTDE-ALLDIYRKLR--PGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 316
Query: 267 NRRLNLDIPQ--NNTFLLPRDILTAADHLIGMKFRMGTL------------DDMNHLKNK 312
N++L L + ++ L D++ ++L+ + T+ DD++H N+
Sbjct: 317 NKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFGNR 376
Query: 313 RIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
R+R+V +L+Q+Q + + R+E +VR + + TPQ L+ P+ + FFG
Sbjct: 377 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAI--TPQTLINIRPVVAAIKEFFGTS 434
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+ NPL+ + H R+LS LGPGGL+ A +RD+H SHYGR+CPI+T EG N+
Sbjct: 435 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 494
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ 492
GLIGSL+++AR+ +G IE+P+ ++ + + YL+ ++ +++A N G
Sbjct: 495 GLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRS 554
Query: 493 EEQIVPARYRQ-EFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQ 551
+ R + E +A +V + Q S+ ++IPF+EH+DANRALM +NMQRQ
Sbjct: 555 SSRACWVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ 614
Query: 552 AVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVI 610
AVPL +SE+ +VGTG+E + A+D+G + +AE G I + I V+ G + +
Sbjct: 615 AVPLVRSERPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADDGTRRTYRMRK 674
Query: 611 YRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEG-YNSED 669
+ RSN TC +Q V G ++ GQ++ADG T GE++LGKN+LVA G +ED
Sbjct: 675 FARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAINAVGGSTTNED 734
Query: 670 AVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILG 729
A+++S+RLV ED+ TS HI ++EI T G E IT IP++ +L +LD+ G+V +G
Sbjct: 735 AIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIG 794
Query: 730 SWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVR 789
+ V GDILVGK+TP+ E+ PE+RLLRAI G + ++T LK+P G G+VI +R
Sbjct: 795 AEVRDGDILVGKVTPK--GETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIR 852
Query: 790 WLHKKGG----SGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDG 845
+ +G N E + +Y+ QKR+I GDK+AGRHGNKG++ KIL +DMP+L DG
Sbjct: 853 VFSHEDDDELPAGVN-ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDG 911
Query: 846 RPVDMVFNPLGVPSRMNVGQIFECSLG----------LAGDVLDRHYRIAPFDERYEQEA 895
PVD++ N GVP RMNVGQI E LG +AG + D + E A
Sbjct: 912 TPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNL---PEELLHAA 968
Query: 896 SRKLVFSELYQASKQTSNPWIFEPEYP-----------GKSRIFDGRTGTPFEQPVIIGN 944
++V + ++ +K+ + P GK+ +FDGR+G PF PV +G
Sbjct: 969 PNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFPYPVTVGY 1028
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
YI+KL H VDDKIH RS+G Y+++TQQPL G+A+ GGQR GEME WA++ +G A+ LQE
Sbjct: 1029 MYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQE 1088
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
+LT KSD R +V + G I +P PESF++L++EL+SL L +
Sbjct: 1089 LLTIKSDDTVGRVKVYEAIVKGENIPEP-GIPESFKVLLKELQSLCLNV 1136
>pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase-
Includes Complete Structure With Side-Chains (Except For
Disordered Regions)-Further Refined From Original
Deposition-Contains Additional Sequence Information
Length = 1119
Score = 688 bits (1757), Expect = 0.0
Identities = 419/1096 (38%), Positives = 621/1096 (56%), Gaps = 65/1096 (5%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEE---------LFK--FPKIEDTDQEIEFQLFVETYQLV 60
LP L +IQ E + + + + E FK FP E + L Y++
Sbjct: 15 LPPLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIG 74
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
+P + + + LTY + LY LI K++ I+E +F+G++PLM G+ I+NG R
Sbjct: 75 DPPFSQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHLPLMTEDGSFIINGADR 134
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
++++QI +SPG+Y+ + G + + + G ++LE++ + +V+ K+K +
Sbjct: 135 VIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEASGVVTMKVN-KRKFPL 193
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
++L +G + ++ + + L D+ + +E+ + F G P
Sbjct: 194 VLLLRVLGYDQETLVRELSAYGDLVQGLLDEAVLAMRPEEAMVRLF--TLLRPGDPPKKD 251
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRD-------ILTAADHL 293
++L +R +LGE GR +L + + T + D L +L
Sbjct: 252 KALAYLFGLLADPKRYDLGEAGRYKAEEKLGVGL-SGRTLVRFEDGEFKDEVFLPTLRYL 310
Query: 294 IGMKFRMG--TLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPT 351
+ + +DD++HL N+RIR+V +L+ DQF + L RL VR + L T
Sbjct: 311 FALTAGVPGHEVDDIDHLGNRRIRTVGELMADQFRVGLARLARGVRERMVMGSPDTL--T 368
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
P LV S PL FF LSQ D TNPL+ + H R++S LGPGGLT A F +R
Sbjct: 369 PAKLVNSRPLEAALREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVR 428
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICP++T EG N+GLI SLA +AR+ G I +P+ + ++Y++
Sbjct: 429 DVHRTHYGRICPVETPEGANIGLITSLAAYARVDALGFIRTPYRRVKNGVVTEEVVYMTA 488
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
S ++ Y IA N +++V AR R E + +A E+V + Q FS+ +LI
Sbjct: 489 SEEDRYTIAQANTPLEGDRIATDRVV-ARRRGEPVIVAPEEVEFMDVSPKQVFSLNTNLI 547
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+EH+DANRALM SNMQ QAVPL +++ +V TGLE +V DS AE +G+++ D
Sbjct: 548 PFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVVKVD 607
Query: 592 TNKI-VLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELS 650
+I V + G + PL Y RSN+ T Q+ +V+ G+ +K+G +LADG A+ G L+
Sbjct: 608 GTRIAVRYEDGRLVEHPLRRYARSNQGTAFDQRPRVRVGQRVKKGDLLADGPASEEGFLA 667
Query: 651 LGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIP 710
LG+NVLVA MP++GYN EDA++IS+ L+ D YTS HI +YEI+ T GPERIT IP
Sbjct: 668 LGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIP 727
Query: 711 HLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTS 770
HL LR+LD+ G+V +G+ V+ GDILVG+ + + +E S PE+RLLR+I G +
Sbjct: 728 HLSEAALRDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEPS--PEERLLRSIFGEKARDV 785
Query: 771 KETCLKLPIGGRGRVIDVRWLHKKGGSGYN-----PETIHIYILQKREIKVGDKVAGRHG 825
K+T L++P G G ++ R ++G G E + +++ QKR+++VGDK+A RHG
Sbjct: 786 KDTSLRVP-PGEGGIVVGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANRHG 844
Query: 826 NKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIA 885
NKG+V+KIL +DMP+L DG PVD++ NPLGVPSRMN+GQI E LGLAG L + Y
Sbjct: 845 NKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISP 904
Query: 886 PFDERYEQEASRKLVFS-ELYQASKQTSNPWIFEPE-------------YPGKSR----- 926
FD E E L + LY +Q + + E PGKS
Sbjct: 905 VFDGATEPEIKELLAEAFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPEEQLK 964
Query: 927 ---------IFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGR 977
++DGRTG PFE P+++G +I+KL H V+DK+H RS+G Y+L+TQQPL G+
Sbjct: 965 ELFDLGKVVLYDGRTGEPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGK 1024
Query: 978 AKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPE 1037
A+ GGQR GEMEVWALE +G AH LQEMLT KSD I+ R I G + +P PE
Sbjct: 1025 AQFGGQRFGEMEVWALEAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIKGEDVPEP-SVPE 1083
Query: 1038 SFRLLVRELRSLALEL 1053
SFR+LV+EL++LAL++
Sbjct: 1084 SFRVLVKELQALALDV 1099
>emb|CAB65465.2| (Y19223) RNA polymerase, beta subunit [Thermus aquaticus]
Length = 1119
Score = 688 bits (1757), Expect = 0.0
Identities = 419/1096 (38%), Positives = 621/1096 (56%), Gaps = 65/1096 (5%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEE---------LFK--FPKIEDTDQEIEFQLFVETYQLV 60
LP L +IQ E + + + + E FK FP E + L Y++
Sbjct: 15 LPPLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIG 74
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
+P + + + LTY + LY LI K++ I+E +F+G++PLM G+ I+NG R
Sbjct: 75 DPPFSQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHLPLMTEDGSFIINGADR 134
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
++++QI +SPG+Y+ + G + + + G ++LE++ + +V+ K+K +
Sbjct: 135 VIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEASGVVTMKVN-KRKFPL 193
Query: 181 LVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
++L +G + ++ + + L D+ + +E+ + F G P
Sbjct: 194 VLLLRVLGYDQETLVRELSAYGDLVQGLLDEAVLAMRPEEAMVRLF--TLLRPGDPPKKD 251
Query: 241 ESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRD-------ILTAADHL 293
++L +R +LGE GR +L + + T + D L +L
Sbjct: 252 KALAYLFGLLADPKRYDLGEAGRYKAEEKLGVGL-SGRTLVRFEDGEFKDEVFLPTLRYL 310
Query: 294 IGMKFRMG--TLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPT 351
+ + +DD++HL N+RIR+V +L+ DQF + L RL VR + L T
Sbjct: 311 FALTAGVPGHEVDDIDHLGNRRIRTVGELMADQFRVGLARLARGVRERMVMGSPDTL--T 368
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
P LV S PL FF LSQ D TNPL+ + H R++S LGPGGLT A F +R
Sbjct: 369 PAKLVNSRPLEAALREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVR 428
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICP++T EG N+GLI SLA +AR+ G I +P+ + ++Y++
Sbjct: 429 DVHRTHYGRICPVETPEGANIGLITSLAAYARVDALGFIRTPYRRVKNGVVTEEVVYMTA 488
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
S ++ Y IA N +++V AR R E + +A E+V + Q FS+ +LI
Sbjct: 489 SEEDRYTIAQANTPLEGDRIATDRVV-ARRRGEPVIVAPEEVEFMDVSPKQVFSLNTNLI 547
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+EH+DANRALM SNMQ QAVPL +++ +V TGLE +V DS AE +G+++ D
Sbjct: 548 PFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVVKVD 607
Query: 592 TNKI-VLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELS 650
+I V + G + PL Y RSN+ T Q+ +V+ G+ +K+G +LADG A+ G L+
Sbjct: 608 GTRIAVRYEDGRLVEHPLRRYARSNQGTAFDQRPRVRVGQRVKKGDLLADGPASEEGFLA 667
Query: 651 LGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIP 710
LG+NVLVA MP++GYN EDA++IS+ L+ D YTS HI +YEI+ T GPERIT IP
Sbjct: 668 LGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIP 727
Query: 711 HLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTS 770
HL LR+LD+ G+V +G+ V+ GDILVG+ + + +E S PE+RLLR+I G +
Sbjct: 728 HLSEAALRDLDEEGIVRIGAEVKPGDILVGRTSFKGEQEPS--PEERLLRSIFGEKARDV 785
Query: 771 KETCLKLPIGGRGRVIDVRWLHKKGGSGYN-----PETIHIYILQKREIKVGDKVAGRHG 825
K+T L++P G G ++ R ++G G E + +++ QKR+++VGDK+A RHG
Sbjct: 786 KDTSLRVP-PGEGGIVVGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANRHG 844
Query: 826 NKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIA 885
NKG+V+KIL +DMP+L DG PVD++ NPLGVPSRMN+GQI E LGLAG L + Y
Sbjct: 845 NKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISP 904
Query: 886 PFDERYEQEASRKLVFS-ELYQASKQTSNPWIFEPE-------------YPGKSR----- 926
FD E E L + LY +Q + + E PGKS
Sbjct: 905 VFDGATEPEIKELLAEAFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPEEQLK 964
Query: 927 ---------IFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGR 977
++DGRTG PFE P+++G +I+KL H V+DK+H RS+G Y+L+TQQPL G+
Sbjct: 965 ELFDLGKVVLYDGRTGEPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGK 1024
Query: 978 AKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPE 1037
A+ GGQR GEMEVWALE +G AH LQEMLT KSD I+ R I G + +P PE
Sbjct: 1025 AQFGGQRFGEMEVWALEAYGAAHTLQEMLTIKSDDIEGRNAAYQAIIKGEDVPEP-SVPE 1083
Query: 1038 SFRLLVRELRSLALEL 1053
SFR+LV+EL++LAL++
Sbjct: 1084 SFRVLVKELQALALDV 1099
>gi|11467044 RNA polymerase subunit [Euglena gracilis]
sp|P23579|RPOB_EUGGR DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||RNEGB DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Euglena
gracilis chloroplast
emb|CAA35052.1| (X17191) RNA polymerase subunit [Euglena gracilis]
emb|CAA50138.1| (X70810) RNA polymerase subunit [Euglena gracilis]
Length = 1082
Score = 680 bits (1735), Expect = 0.0
Identities = 410/1102 (37%), Positives = 623/1102 (56%), Gaps = 70/1102 (6%)
Query: 8 GMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEK 67
G L IQ F F+ +GL EEL K I I FQ + + +P I +
Sbjct: 4 GCRVRSNLLDIQRNSFRSFLKKGLVEELRKIKDIAHEGFRISFQ--TDNVKYKKPKISAE 61
Query: 68 DAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQIL 127
A+ TYS +++ + + N ++ + I IPLM GT I NG RI++NQI+
Sbjct: 62 FALKNGETYSLSVHIPVEVTYNNMFLVRNKYILFAKIPLMTEKGTFIFNGNKRIMVNQII 121
Query: 128 QSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSR-KQKISILVLSSA 186
+SPG+Y++ + I T+I +G L +ID+ I+ +V + K I ++
Sbjct: 122 RSPGVYFEKNRYNDSIFA---TLIPTFGSWLTFKIDQDEGIFVKVDKIKTAIPLINFLKC 178
Query: 187 MGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRE 246
+G + + + P IF+ L + E I + EFY+ F + F + +
Sbjct: 179 LGLSRKKFFLYLNDP-IFIETLQESESYGIRLE---FFEFYKIFFPNEVNVRFGNAR-KF 233
Query: 247 LQKKFFQQR-CELGEIGRRNMNRRL-NLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLD 304
L+ KF R +LGE+GR +N ++ + Q+N L P D+L A +LI +K M D
Sbjct: 234 LRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHYLIELKKGMIPFD 293
Query: 305 DMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQ--NLVTSTPLT 362
+++ LKNK +RS+ +LLQ QF + L LE+ ++ + + T + S +T
Sbjct: 294 EIDDLKNKLVRSIGELLQSQFRIILNELESSLKEKLIFLYKNPSEKTFRLSRFFNSYFIT 353
Query: 363 TTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRIC 422
FF ++PLSQ+LD TN L+++ H RKLS GP GL +R+I++S YGR+C
Sbjct: 354 NRIRKFFSVNPLSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDVREINTSQYGRVC 413
Query: 423 PIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEIS----ERSKRIHMLYLSPSRDEYYM 478
PI+TSEG N GLI SLA R+ ++G +ESPF+++ E +K I+ ++S ++++Y+
Sbjct: 414 PIETSEGKNAGLILSLAKDVRVDKYGFLESPFYKVLRGKIETNKGIY--FISSAQEKYFT 471
Query: 479 IATGNYLALNQGN--QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEH 536
+A + +Q N + +++ + + F + + SI + Q+ S+G L+PF+EH
Sbjct: 472 VAPFDVFRSSQSNLLDKNKLLGVKRSKIFSYSFSKNIDFISISTDQFTSLGTGLVPFLEH 531
Query: 537 NDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIV 596
NDANR LM SNMQRQ++ L + E + TG E + +S +A+ GK+IY KIV
Sbjct: 532 NDANRVLMGSNMQRQSLILLEKEVPFIKTGREALINRESDATVLAKSSGKVIYSSLKKIV 591
Query: 597 ---------------------LFGSGETLS---------VPLVIY-----RRSNKNTCMH 621
L G +S V IY ++SN +
Sbjct: 592 IQEEEYCANIEFFNKNYSFFNLLGCLNEISQKNFKLIKKVNQKIYFLESPKKSNHGVYIQ 651
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYED 681
+ V G+ +++GQI+ADG +T+ G + LGKNVLVAY+ WEGYN EDAV+IS+RLV+ED
Sbjct: 652 KIPIVHEGEWVRKGQIIADGMSTLRGGICLGKNVLVAYLGWEGYNFEDAVIISERLVFED 711
Query: 682 IYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGK 741
I+TS H++K++ E I+ IP+ + ++NL NG++ +GS ++A D+L+G+
Sbjct: 712 IFTSIHMKKFKTFIVNDEKKGENISMFIPNASLKTIKNLKNNGIIKIGSEIKAQDVLIGR 771
Query: 742 LTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNP 801
+ ++ P++++L A G +V K+ L+ P G V V L KK
Sbjct: 772 IKVKLKN----TPKNKMLIAFFGNKVR--KDVSLRSPRSLVGIVTSVEILCKKSNC---- 821
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
++ I++ +KR I++GDK+AGRHGNKGI+SKI+ DMP+L DG PVDM+ NPLG+PSRM
Sbjct: 822 -SVLIHVAEKRRIQIGDKIAGRHGNKGIISKIVPSIDMPFLPDGTPVDMILNPLGIPSRM 880
Query: 862 NVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEY 921
NVGQ+FE L L+ L Y+I PFDE S+ V+ +L +A K+T W+F P Y
Sbjct: 881 NVGQVFESLLNLSSLFLKERYKIQPFDEVQTSMNSKSFVYKKLNEARKRTKKDWLFNPNY 940
Query: 922 PGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQG 981
PGK+ ++DGR PF+ PV G YILKLIH V DKIH R +G Y+ VTQQPL+G++K G
Sbjct: 941 PGKAFLYDGRNCRPFDHPVAFGYAYILKLIHMVKDKIHARVTGPYSSVTQQPLRGKSKNG 1000
Query: 982 GQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRL 1041
GQR GEMEVWA+EGFG A++LQE+LT KSD + R E L + I G SKP + PE+F+L
Sbjct: 1001 GQRFGEMEVWAIEGFGAAYLLQELLTIKSDDVLNRSEALFSLINGTYFSKP-NIPEAFKL 1059
Query: 1042 LVRELRSLALELNHFLVSEKNF 1063
+ E++SL +++ F + K F
Sbjct: 1060 FILEMQSLCIDIKIFTNNYKKF 1081
>gb|AAA91426.2| (U24494) DNA polymerase [Mycobacterium smegmatis]
Length = 1169
Score = 678 bits (1731), Expect = 0.0
Identities = 397/1068 (37%), Positives = 627/1068 (58%), Gaps = 61/1068 (5%)
Query: 30 GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKE-KDAVYESLTYSSELYVSAGLIW 88
GL E L + IED + + V+ S+ E KD + +TY++ L+V+A I
Sbjct: 76 GLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDECKD---KDMTYAAPLFVTAEFIN 132
Query: 89 KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGI-SVYT 147
N+ I+ QT+F+G+ P+M GT I+NG R+V++Q+++SPG+Y+ +D ++++
Sbjct: 133 NNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHS 192
Query: 148 GTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSF 207
+I G LE ++D++ + R+ RK++ + VL A+G +I+E + EI +
Sbjct: 193 VKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIVERFGFSEIMMGT 252
Query: 208 LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNM 266
L E+ + A+L+ YR+ G+P ES L+ FF++ R +L +GR +
Sbjct: 253 L---EKDTTSGTDEALLDIYRKLR--PGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 307
Query: 267 NRRLNLDI--PQNNTFLLPRDILTAADHLI-------------GMKFRMGTLDDMNHLKN 311
N++L L+ P ++ L D++ ++L+ G++F + + D++H N
Sbjct: 308 NKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVEFAVES-HDIDHFGN 366
Query: 312 KRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGL 371
+R+R+V +L+Q+Q + L R+E +VR + + TPQ L+ P+ + FFG
Sbjct: 367 RRLRTVGELIQNQIRVRLSRMERVVRERMTTQDVEAI--TPQTLINIRPVVAAIKEFFGT 424
Query: 372 HPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGIN 431
LSQ +D+ NPL+ + H R+LS LGPGGL+ A +RD+H SHYGR+CPI+T EG N
Sbjct: 425 SQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPN 484
Query: 432 VGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGN 491
+GLIGSL+++AR+ +G IE+P+ ++ E + YL+ ++ +++A N G
Sbjct: 485 IGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHVVAQANSPTDENGR 544
Query: 492 -QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQR 550
E++++ + E ++ +QV + Q S+ ++IPF+EH+DANRALM +NMQR
Sbjct: 545 FTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR 604
Query: 551 QAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKI--VLFGSGETLSVPL 608
QAVPL +SE +VGTG+E + A+D+ T + H+ +I + + V+ G S L
Sbjct: 605 QAVPLVRSEAPLVGTGMELRAAIDAVTWS--SHKTGVIEEVSADYITVMADDGTRQSYRL 662
Query: 609 VIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSE 668
+ RSN TC +Q+ V G+ ++ GQ++ADG T GE++LGKN+LVA MPWEG+N E
Sbjct: 663 RKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHNYE 722
Query: 669 DAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVIL 728
DA+++S+RLV ED+ TS HI ++EI T G E IT IP L +L +LD+ +V +
Sbjct: 723 DAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRVIPKLSDEVLADLDEPRIVRI 782
Query: 729 GSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDV 788
G+ V G+ILVGK+TP+ E+ PE+RLLRAI G + ++T LK+P G G+VI +
Sbjct: 783 GAEVRDGEILVGKVTPK--GETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGI 840
Query: 789 RWLHKKGGS----GYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQD 844
R ++ G N E + +Y+ QKR+I GDK+A RHGNKG++ KIL +DMP+L D
Sbjct: 841 RVFSREDDDELPVGVN-ELVRVYVAQKRKISDGDKLARRHGNKGVIGKILPVEDMPFLPD 899
Query: 845 GRPVDMVFNPLGVPSRMNVGQIFECSLG---LAGDVLDRHYRIAPFDERYEQE----ASR 897
G PVD++ N G +N+GQI E LG AG +D + + + +E +
Sbjct: 900 GTPVDIILNTHGCRVVLNIGQILETHLGWGAKAGWNIDVLAGVPDWASKLPEELYSAPAD 959
Query: 898 KLVFSELYQASKQTSNPWIFEPEYP-----------GKSRIFDGR-TGTPFEQPVIIGNP 945
V + ++ +++ + P GK+ +FDGR +G PF PV +G
Sbjct: 960 STVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSSGEPFPYPVTVGYM 1019
Query: 946 YILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEM 1005
YILKL H VDDKIH RS+G Y+++TQQPL G+A+ GGQR GEME WA++ +G A+ LQE+
Sbjct: 1020 YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQEL 1079
Query: 1006 LTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
LT KSD R +V + G I +P PESF++L++EL+SL L +
Sbjct: 1080 LTIKSDDTVGRVKVYEAIVKGENIPEP-GIPESFKVLLKELQSLCLNV 1126
>gb|AAA20242.2| (U12205) RNA-polymerase beta subunit [Mycobacterium tuberculosis]
Length = 1092
Score = 677 bits (1728), Expect = 0.0
Identities = 384/1022 (37%), Positives = 607/1022 (58%), Gaps = 55/1022 (5%)
Query: 30 GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKE-KDAVYESLTYSSELYVSAGLIW 88
GL E L++ IED + + V+ + E KD + +TY++ L+V+A I
Sbjct: 85 GLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKD---KDMTYAAPLFVTAEFIN 141
Query: 89 KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHK-GISVYT 147
N+ I+ QT+F+G+ P+M GT I+NG R+V++Q+++SPG+Y+ +D ++++
Sbjct: 142 NNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHS 201
Query: 148 GTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSF 207
+I G LE ++D++ + R+ RK++ + VL A+G +I+E + EI S
Sbjct: 202 VKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRST 261
Query: 208 LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNM 266
L +++ +G+ E A+L+ YR+ G+P ES L+ FF++ R +L +GR +
Sbjct: 262 L--EKDNTVGTDE-ALLDIYRKLR--PGEPPTKESAQTLLENLFFKEKRYDLARVGRYKV 316
Query: 267 NRRLNLDI--PQNNTFLLPRDILTAADHLIGMKFRMGTL------------DDMNHLKNK 312
N++L L + P ++ L D++ ++L+ + T+ DD++H N+
Sbjct: 317 NKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNR 376
Query: 313 RIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
R+R+V +L+Q+Q + + R+E +VR + + TPQ L+ P+ + FFG
Sbjct: 377 RLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAI--TPQTLINIRPVVAAIKEFFGTS 434
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+ NPL+ + H R+LS LGPGGL+ A +RD+H SHYGR+CPI+T EG N+
Sbjct: 435 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 494
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGN- 491
GLIGSL+++AR+ +G IE+P+ ++ + ++YL+ ++ +++A N G
Sbjct: 495 GLIGSLSVYARVNPFGFIETPYRKVVDGVVSDGIVYLTADEEDRHVVAQANSPIDADGRF 554
Query: 492 QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQ 551
E +++ R E + +V + Q S+ ++IPF+EH+DANRALM +NMQRQ
Sbjct: 555 VEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ 614
Query: 552 AVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVI 610
AVPL +SE +VGTG+E + A+D+ T + ++ G I + I V+ +G + +
Sbjct: 615 AVPLVRSEAPLVGTGMELRAAIDAATSS-SQESGVIEEVSADYITVMHDNGTRRTYRMRK 673
Query: 611 YRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDA 670
+ RSN TC +Q V G ++ GQ++ADG T GE++LGKN+LVA MPWEG+N EDA
Sbjct: 674 FARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDA 733
Query: 671 VLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGS 730
+++S+RLV ED+ TS HI ++EI T G E IT IP++ +L +LD+ G+V +G+
Sbjct: 734 IILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGA 793
Query: 731 WVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRW 790
V GDILVGK+TP+ E+ PE+RLLRAI G + ++T LK+P G G+VI +R
Sbjct: 794 EVRDGDILVGKVTPK--GETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRV 851
Query: 791 LHKKG----GSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGR 846
++ +G N E + +Y+ QKR+I GDK+AGRHGNKG++ KIL +DMP+L DG
Sbjct: 852 FSREDEDELPAGVN-ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGT 910
Query: 847 PVDMVFNPLGVPSRMNVGQIFECSLGL---AGDVLDRHYRIAPFDERYEQE----ASRKL 899
PVD++ N GVP RMN+GQI E LG +G +D + + R E +
Sbjct: 911 PVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAI 970
Query: 900 VFSELYQASKQTSNPWIFEPEYP-----------GKSRIFDGRTGTPFEQPVIIGNPYIL 948
V + ++ +++ + P GK+ +FDGR+G PF PV +G YI+
Sbjct: 971 VSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIM 1030
Query: 949 KLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTY 1008
KL H VDDKIH RS+G Y+++TQQPL G+A+ GGQR GEME WA++ +G A+ LQE+LT
Sbjct: 1031 KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI 1090
Query: 1009 KS 1010
KS
Sbjct: 1091 KS 1092
>pir||S52324 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Arabidopsis
thaliana chloroplast (fragment)
emb|CAA58965.1| (X84159) RNA polymerase subunit beta [Arabidopsis thaliana]
Length = 368
Score = 659 bits (1683), Expect = 0.0
Identities = 321/368 (87%), Positives = 346/368 (93%), Gaps = 2/368 (0%)
Query: 346 YKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRT 405
YKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRT
Sbjct: 1 YKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRT 60
Query: 406 ASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSK--R 463
A+FRIRDIH SHYGRICPIDTSEGINVGLIGSL+IHARIG WGS+ESPF+E+ E+SK R
Sbjct: 61 ANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELFEKSKKAR 120
Query: 464 IHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQY 523
I ML+LSPS+DEYYMIA GN LALN+G QEEQ VPARYRQEFLTIAWE+VHLRSIF FQY
Sbjct: 121 IRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQAVPARYRQEFLTIAWEEVHLRSIFPFQY 180
Query: 524 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEH 583
FSIGASLIPFIEHNDANRALMSSNMQRQAVPLS+SEKCIVGTGLERQVALDSG AIAEH
Sbjct: 181 FSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEH 240
Query: 584 EGKIIYKDTNKIVLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAA 643
EGKI+Y DT KIVL G+G+TLS+PL++Y+RSNKNTCMHQK QV+RGKCIK+GQILADGAA
Sbjct: 241 EGKILYTDTEKIVLSGNGDTLSIPLIMYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAA 300
Query: 644 TVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPE 703
TVGGEL+LGKN+LVAYMPWEGYN EDAVLIS+ LVY DIYTSFHIRKYEIQTHVT+ GPE
Sbjct: 301 TVGGELALGKNILVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPE 360
Query: 704 RITNKIPH 711
RIT +IPH
Sbjct: 361 RITKEIPH 368
>sp|O83269|RPOB_TREPA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||C71350 probable DNA-directed RNA polymerase, beta subunit (rpoB) - syphilis
spirochete
gb|AAC65229.1| (AE001205) DNA-directed RNA polymerase, beta subunit (rpoB)
[Treponema pallidum]
Length = 1178
Score = 656 bits (1675), Expect = 0.0
Identities = 369/876 (42%), Positives = 524/876 (59%), Gaps = 37/876 (4%)
Query: 210 DKEEKKIGSKESAILEFYRQFA-CV------GGDPVFPESLCRELQKKFFQ-QRCELGEI 261
++EE K SK A E R+ A C+ DP+ ++ ++LQ FF +R +LG +
Sbjct: 313 EREEMKF-SKSGAQDELSREEALCIVYSALRPSDPMTMDAAEKDLQTMFFSPRRYDLGRV 371
Query: 262 GRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLL 321
GR +N++ D P L DI+ LI M DD++HL N+RIRSV +L+
Sbjct: 372 GRYKLNKKFRSDSPTTECTLTLDDIVNTMKFLIRMYSGDAQEDDIDHLGNRRIRSVGELM 431
Query: 322 QDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRT 381
+ A +R+E + + + + PQ+L++ P+ + FFG LSQ +D+
Sbjct: 432 TNTLKTAFLRMERIAKERMSSKETETI--KPQDLISIKPIMAAIKEFFGASQLSQFMDQV 489
Query: 382 NPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIH 441
NPL ++ H R+L+ LGPGGL+ A F +RD+H +HYGR+CPI+T EG N+GLI S+A +
Sbjct: 490 NPLAELTHKRRLNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSMANY 549
Query: 442 ARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARY 501
AR+ +G +E P+ + + + YL ++ Y I + G V R+
Sbjct: 550 ARVNGYGFLEVPYVRVRDGVVTKEIEYLDAMDEDRYYIGQDSTAVGPDGVIRVDHVSCRH 609
Query: 502 RQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKC 561
R ++ T + + + + Q S+ ASLIPF+EH+DANRALM SNMQRQ VPL E
Sbjct: 610 RGDYSTRSPKDIQYMDVSPKQIISVSASLIPFLEHDDANRALMGSNMQRQGVPLIFPEPP 669
Query: 562 IVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL---FGSGETLSV--PLVIYRRSNK 616
VGTG+E + A DSG L A+ +G + Y + KIV+ SGE V PL+ Y+R+N+
Sbjct: 670 RVGTGMEEKCAYDSGVLVKAKQDGTVAYVSSEKIVVCSAAASGEEQEVVYPLLKYQRTNQ 729
Query: 617 NTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDR 676
+TC HQ+ V G ++ G LADG AT GEL+LG+N+LV ++PW GYN EDA+LIS R
Sbjct: 730 DTCYHQRPIVHVGDRVQVGDALADGPATYRGELALGRNILVGFVPWNGYNYEDAILISHR 789
Query: 677 LVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGD 736
+V ED++TS HI+++ + T G ER+TN IP+ L NLD G++ +GS V AGD
Sbjct: 790 VVKEDMFTSVHIKEFSTEVRETKLGSERMTNDIPNKSEKNLDNLDAEGIIRIGSKVRAGD 849
Query: 737 ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGG 796
+L+GK+TP+ ES PE RLL +I G + +++ L++P G G VIDV+ L + G
Sbjct: 850 VLIGKITPK--SESETTPEFRLLNSIFGEKAKEVRDSSLRVPHGVEGTVIDVQRLRRSEG 907
Query: 797 SGYNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFN 853
NP E + + I KR+++ GDK+AGRHGNKGIV++IL +DMPYL DG P+D+ N
Sbjct: 908 DDLNPGVSEVVKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPYLDDGTPLDVCLN 967
Query: 854 PLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSN 913
PLGVPSRMN+GQI E LGLAG LD Y F Q S + + +L QA T++
Sbjct: 968 PLGVPSRMNIGQILESELGLAGLRLDEWYESPVF-----QSPSNEQIGEKLMQAGFPTNS 1022
Query: 914 PWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQP 973
K + DGRTG F+ PV +G Y +KL H VDDK+H RS+G Y+LVTQQP
Sbjct: 1023 ----------KVMLRDGRTGDYFQNPVFVGVIYFMKLAHLVDDKMHARSTGPYSLVTQQP 1072
Query: 974 LKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPV 1033
L G+A+ GGQR+GEMEVWALE +G A+ LQE+LT KSD + R ++ I+ G S P
Sbjct: 1073 LGGKAQFGGQRLGEMEVWALEAYGAANTLQELLTIKSDDMHGRSKIY-EAIVKGEASSPT 1131
Query: 1034 DAPESFRLLVRELRSLALELNHFLVSEKNFRIHRKE 1069
PESF +LV+ELR LAL+ + K + ++
Sbjct: 1132 GIPESFNVLVQELRGLALDFTIYDAKGKQIPLTERD 1167
Score = 87.0 bits (212), Expect = 1e-15
Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 10/174 (5%)
Query: 33 EELFK--FPKIEDT-DQEIEFQLFVETYQLVEPSIK--EKDAVYESLTYSSELYVSAGLI 87
E++FK FP T D +E+Q +Y L E +IK E + + LTY+ L L
Sbjct: 62 EDVFKTTFPIESSTGDMTLEYQ----SYSLDEKNIKFSEAECKQKGLTYAIPLKALVDLR 117
Query: 88 WKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVYT 147
+ N+ I+ + I++G+IP M GT I+NG R+V++QI +SPG+ + E D +G V++
Sbjct: 118 FNNTGEIRRKDIYMGDIPKMTERGTFIINGAERVVVSQIHRSPGVVFSHEKDKEGREVFS 177
Query: 148 GTIISDWGGRLELEID-RKARIWARVSRKQKISILVLSSAMGSNLNEILENVCY 200
II G LE EID +K I+A++ +K++I V A+ E + Y
Sbjct: 178 SRIIPYRGSWLEFEIDQKKDLIYAKLDKKRRILGTVFLRALHYETREQIIEAFY 231
>sp|Q59191|RPOB_BORBU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||D70148 DNA-directed RNA polymerase (rpoB) homolog - Lyme disease spirochete
gb|AAB91501.1| (AE001144) DNA-directed RNA polymerase (rpoB) [Borrelia burgdorferi]
Length = 1155
Score = 656 bits (1673), Expect = 0.0
Identities = 354/858 (41%), Positives = 527/858 (61%), Gaps = 32/858 (3%)
Query: 206 SFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFF-QQRCELGEIGRR 264
+F K+ K KES +L Y G+P+ ++ +L+ FF ++R +LG +GR
Sbjct: 299 AFFALKDGSKELPKESVMLAVYGSL--FPGEPISIDNAENDLKTIFFSERRYDLGRVGRY 356
Query: 265 NMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQ 324
++++ D + L DI+ HL+ + LDD++HL N+R+RSV +LL +
Sbjct: 357 KLSKKFGFD-DLTTSVLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNI 415
Query: 325 FGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPL 384
+ A+ R+E + + + + L PQ L++ P+ + + FF LSQ +D+ NPL
Sbjct: 416 YKGAMSRVEKIAKDRMSNKEVFNL--KPQELISVKPIVSAVKEFFATSQLSQFMDQVNPL 473
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
++ H R+L+ LGPGGL+ A F +RD+H +HYGR+CPI+T EG N+GLI SLA ++R+
Sbjct: 474 AELTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRV 533
Query: 445 GRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQE 504
+G +E+P+ ++ + YLS +E IA N + G E +V R +
Sbjct: 534 NDYGFLETPYRKVVNGVVTDQLEYLSAIDEEKKCIAQANAAFNSNGKYLEDLVSVRISGD 593
Query: 505 FLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVG 564
+ T + + + Q S+ ++LIPF+EHNDANRALM SNMQRQAVPL + IVG
Sbjct: 594 YTTTSPTNIDYMDVSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVG 653
Query: 565 TGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL-----FGSGETLSVPLVIYRRSNKNTC 619
TG+E VA DSG + A+ G++I ++KIV+ + + +V Y R+N++TC
Sbjct: 654 TGMESVVAKDSGVVVKAKRSGEVILATSSKIVVKPFEAENAKDLDEYHIVKYERTNQDTC 713
Query: 620 MHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVY 679
+Q V+ G+ ++RG+I+ADG AT GEL+LG N+L+ +PW G+N EDA+LISDR+V
Sbjct: 714 FNQSVLVKEGQKVERGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVK 773
Query: 680 EDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILV 739
ED+YTS HI+++ I+ T GPE++T IP++ +L LD+NG++ +G++V+ GDILV
Sbjct: 774 EDLYTSIHIKEFSIEVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILV 833
Query: 740 GKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGY 799
GK+TP+ E PE RLL +I G + K LK+P G G VIDV+ + K+
Sbjct: 834 GKVTPK--SEGDITPEFRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDVGNL 891
Query: 800 NP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLG 856
+P E + +Y+ +KR++K GDK+AGRHGNKG+V+KIL +DMPYL DG P+D+ NPLG
Sbjct: 892 SPGVEEILKVYVAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADGTPLDICLNPLG 951
Query: 857 VPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWI 916
VPSRMN+GQ+ E LGLAG L Y + F+ ++ KL + SK+
Sbjct: 952 VPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPTSKEI----- 1006
Query: 917 FEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKG 976
++DG TG PFE V++G Y+LKL H VDDK+H RS+G Y+LV+QQPL G
Sbjct: 1007 ----------LYDGYTGEPFENEVMVGVIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGG 1056
Query: 977 RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAP 1036
+A+ GGQR+GEMEVWALE +G AH LQE+LT KSD + R ++ I+ G + P
Sbjct: 1057 KAQFGGQRLGEMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIY-ENIVKGVPTNVSGIP 1115
Query: 1037 ESFRLLVRELRSLALELN 1054
ESF +L++ELR L L+L+
Sbjct: 1116 ESFNVLMQELRGLGLDLS 1133
Score = 80.0 bits (194), Expect = 1e-13
Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 26/206 (12%)
Query: 12 LPGLNQIQFEGFCRFI------------DRGLTEELFK--FP-KIEDTDQEIEFQ-LFVE 55
LP L +IQ + +F+ + GL E +F+ FP K + D +E++ ++E
Sbjct: 18 LPNLIEIQLNSYEKFLQLDKLKSKKPLLNEGL-ESVFRNIFPIKSGNGDVALEYERYYIE 76
Query: 56 TYQLVEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIV 115
L + EK+ + +Y + L V L + + I+++ +++G IPLM GT I+
Sbjct: 77 NDAL---NFTEKECKRKGQSYEAVLKVRLNLQFLTTGEIRQKDVYMGTIPLMTERGTFII 133
Query: 116 NGIYRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEID-RKARIWARVSR 174
NG R+V++QI +SPG+ + E D +Y+ II G LE EID +K ++ ++ R
Sbjct: 134 NGAERVVVSQIHRSPGVVFYKEKD-----LYSARIIPYRGSWLEFEIDSKKDYLYVKIDR 188
Query: 175 KQKISILVLSSAMGSNLNEILENVCY 200
K++I I + A+G + E + Y
Sbjct: 189 KKRILITLFLRALGFDTREKIIETFY 214
>pir||G75459 DNA-directed RNA polymerase, beta subunit - Deinococcus radiodurans
(strain R1)
gb|AAF10490.1|AE001944_1 (AE001944) DNA-directed RNA polymerase, beta subunit [Deinococcus
radiodurans]
Length = 1179
Score = 653 bits (1666), Expect = 0.0
Identities = 421/1134 (37%), Positives = 615/1134 (54%), Gaps = 108/1134 (9%)
Query: 12 LPGLNQIQFEGFCRFI----------DRGLTEELFKFPKIEDTDQEIEFQLFVE--TYQL 59
LP L ++Q F F+ D GL + I+++++ + ++ Y+L
Sbjct: 42 LPNLTEVQVNSFKAFLQDDKAPDQREDVGLQSAFREVFPIDESEKGRSTGMVLDFIEYRL 101
Query: 60 VEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQ--------EQTIFIGNIPLMNSLG 111
EP ++ + LTY + LYV LI K++ I+ E +F+GN+PLM G
Sbjct: 102 GEPEYSPEECREKDLTYEAPLYVKLELIHKDTGVIKGFKPDSPPESWVFLGNLPLMTFDG 161
Query: 112 TSIVNGIYRIVINQILQSPGIYYQSELDHKGISV-YTGTIIS--DWGGRLELEIDRKARI 168
+ I+NG R+VI+QI +SPG+Y+ S +KGI YT II G +ELE
Sbjct: 162 SFIINGADRVVISQIHRSPGVYFTSS--YKGIKKQYTAAIIPMPKRGPWIELEFAGDVLE 219
Query: 169 WARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIG-SKESAILEFY 227
RK +S+L+ M L PE+ E+K G + A+L +
Sbjct: 220 MKVNKRKFPVSLLLRVLGMDDASIRALFTEFTPEV-----EPGEDKSAGMGADEALLRLF 274
Query: 228 RQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRD- 285
GDP + + L +R +LGE GR MN +L + Q T L D
Sbjct: 275 TVLR--PGDPPKRDKAIQYLFGLLADPRRYDLGEPGRFKMNTKLGVQ-RQERTLLKFEDG 331
Query: 286 ------ILTAADHLIGMKFRMGTL----------------DDMNHLKNKRIRSVADLLQD 323
++ +L+ ++ + T+ DD++HL N+R+R+V +LL D
Sbjct: 332 KFSDAGLVDTIRYLMALQQGLETVPMVDEDGVVTDVPVAEDDIDHLGNRRVRTVGELLAD 391
Query: 324 QFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNP 383
Q + + R+ VR + + TP LV + P+ FFG LSQ D+TNP
Sbjct: 392 QLRVGMGRMARGVRERML--LGNPDAATPTKLVNNRPIVAAMREFFGRSQLSQFKDQTNP 449
Query: 384 LTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHAR 443
L+ + H R++S LGPGGLT A F +RD+H +HYGRICPI+T EG N+GLI SL+ +A+
Sbjct: 450 LSDLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPIETPEGANIGLISSLSSYAK 509
Query: 444 IGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ-EEQIVPARYR 502
+ G I +P+ ++ + + Y++ ++ Y IA N LN+ N ++ V AR +
Sbjct: 510 VNDLGFIMAPYRKVEDGKVTNQVEYMTADIEDRYTIAQAN-SPLNEDNTFADERVLARRK 568
Query: 503 QEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCI 562
+ L ++V + Q SI SLIPF+EH+DANRALM SNMQ QAVPL +++
Sbjct: 569 GDPLLYTPDEVDYMDVSPKQIVSINTSLIPFLEHDDANRALMGSNMQSQAVPLVRADSPA 628
Query: 563 VGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL----------FGSGETLSVPLVIYR 612
VGTG+ER+V DSGT +++ G++ Y D I + +G + L+ +
Sbjct: 629 VGTGVERRVVTDSGTSVVSDVNGRVSYVDARAIQVTLSEDHRELNMNAGNVRTFELIRFT 688
Query: 613 RSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVL 672
RSN+ T + Q V G +K GQ++ADG A+ G L+LG+N+ +A MP++G+N EDA+
Sbjct: 689 RSNQGTNLDQHPIVSVGDEVKVGQVIADGPASERGRLALGQNITIAIMPFDGFNFEDAIC 748
Query: 673 ISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWV 732
I++ LV +D YTS HI K EI+ T GPE+IT IP L LR+LD++G+V +G+ V
Sbjct: 749 INEDLVRQDFYTSVHIEKDEIEARDTKLGPEKITRDIPGLSEAALRDLDEDGIVRVGAEV 808
Query: 733 EAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVI-DVRWL 791
+ GDILVGK + ES PE+RLLR+I G + K+T L++ G G V+ VR+
Sbjct: 809 KPGDILVGKTS--FKGESEPTPEERLLRSIFGEKAREVKDTSLRVQSGQGGIVVKTVRFR 866
Query: 792 HKKGGSGYNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPV 848
G P E + +Y+ QKR+++VGDKVA RHGNKG+VSKI+ +DMPYL+DG PV
Sbjct: 867 RGDEGVDLKPGVREMVRVYVAQKRQLQVGDKVANRHGNKGVVSKIVRPEDMPYLEDGTPV 926
Query: 849 DMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFD-------------------- 888
D+VFNPLGVPSRMN+GQI E LG + + + FD
Sbjct: 927 DIVFNPLGVPSRMNLGQILETHLGEVARLTGQKFETPVFDSVTEATIKEMLEVAAAERLQ 986
Query: 889 ---------ERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQP 939
++ EQE + + A + GKS ++DGRTG P P
Sbjct: 987 ARKDDGFELDKREQEVLDRAGKLGVIDAPGDDYEKGQMQLARTGKSILYDGRTGEPISGP 1046
Query: 940 VIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVA 999
V++G Y++KL H V+DK+H RS+G Y+L+TQQPL G+A+ GGQR GEMEVWALE +G A
Sbjct: 1047 VVVGIMYVMKLYHMVEDKLHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1106
Query: 1000 HILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
H+LQEMLT KSD I R + + G +S PESF++LV+EL SL L++
Sbjct: 1107 HVLQEMLTIKSDDIDGRDAAYQSIVKGEEVSGST-IPESFKVLVKELHSLGLDV 1159
>sp|Q9Z9M2|RPOB_BACHD DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||T44375 rpoB protein [imported] - Bacillus halodurans
dbj|BAA75263.1| (AB017508) rpoB homologue (identity of 87% to B. subtilis )
[Bacillus halodurans]
dbj|BAB03845.1| (AP001507) DNA-directed RNA polymerase beta subunit [Bacillus
halodurans]
Length = 1180
Score = 637 bits (1626), Expect = 0.0
Identities = 340/805 (42%), Positives = 509/805 (62%), Gaps = 38/805 (4%)
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
+ P DI+ + ++ + +G DD++HL N+R+RSV +LLQ+QF + L R+E +VR +
Sbjct: 377 ITPADIIASINYFFNLLHSVGGTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERM 436
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
+I+ TPQ L+ P+ + + FFG LSQ +D+TNPL ++ H R+LS LGPGG
Sbjct: 437 --SIQDPNSITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGG 494
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
LT A F +RD+H SHYGR+CPI+T EG N+GLI SL+ +A++ +G +E+P+ +
Sbjct: 495 LTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNEFGFMETPYRRVDPE 554
Query: 461 SKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSI 518
+ ++ + YL+ ++ Y++A N G+ ++ + AR+R E + ++ ++V +
Sbjct: 555 TGKVTAQIDYLTADEEDNYVVAQANMKLAEDGSFIDENIIARFRGENIVVSRDRVDYMDV 614
Query: 519 FSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTL 578
Q S S IPF+E++D+NRALM +NMQRQAVPL E IVGTG+E A DSG
Sbjct: 615 SPKQVVSAATSCIPFLENDDSNRALMGANMQRQAVPLLVPEAPIVGTGMEHVSAKDSGAA 674
Query: 579 AIAEHEGKIIYKDTNKIVLFG-----SGETLSVPLVIYR-----RSNKNTCMHQKSQVQR 628
+++H G I+ + T K + G+ + L YR RSN+ T +Q+ V+
Sbjct: 675 IVSKHRG-IVERVTAKEIWVRRLEEVDGKEIKGDLDKYRLQKFIRSNQGTSYNQRPIVKE 733
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
G +++ +ILADG + GE++LG+NVLV +M WEGYN EDA+++S+RLV +D+YTS HI
Sbjct: 734 GDVVEKREILADGPSMEKGEMALGRNVLVGFMTWEGYNYEDAIILSERLVKDDVYTSIHI 793
Query: 689 RKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAK 748
+YE + T GPE IT IP++ LRNLD+ G++ +G+ V+ GDILVGK+TP+
Sbjct: 794 EEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDILVGKVTPKGVT 853
Query: 749 ESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNP---ETIH 805
E E+RLL AI G + ++T L+ P GG G V+DV+ +++ G P + +
Sbjct: 854 E--LTAEERLLHAIFGEKAREVRDTSLRAPHGGDGIVLDVKIFNREDGDELPPGVNQLVR 911
Query: 806 IYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQ 865
+YI+QKR+I GDK+AGRHGNKG++S+IL +DMPYL DG P+D++ NPLGVPSRMN+GQ
Sbjct: 912 VYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQ 971
Query: 866 IFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKS 925
+ E LG+A L H FD E++ V++ L +A GK+
Sbjct: 972 VLELHLGMAARRLGLHVASPVFDGASEED-----VWATLEEAGMARD----------GKT 1016
Query: 926 RIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRV 985
++DGRTG PF+ V +G Y++KL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR
Sbjct: 1017 ILYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRF 1076
Query: 986 GEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRE 1045
GEMEVWALE +G A+ LQE+LT KSD + R + + G + +P PESF++L++E
Sbjct: 1077 GEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEP-GVPESFKVLIKE 1135
Query: 1046 LRSLALELNHFLVSEKNFRIHRKEV 1070
L+SL +++ ++S I KE+
Sbjct: 1136 LQSLGMDVK--MLSSTEEEIEMKEL 1158
Score = 141 bits (352), Expect = 4e-32
Identities = 84/262 (32%), Positives = 143/262 (54%), Gaps = 7/262 (2%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
LP L +IQ + F+D GL E I+D + + F++ Y L EP ++
Sbjct: 26 LPNLIEIQTASYQWFLDEGLREMFQDISPIQDFTGNLVLE-FID-YSLGEPKYPVDESKE 83
Query: 72 ESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPG 131
+TY++ L V LI K + ++EQ +F+G+ PLM GT I+NG R++++Q+++SP
Sbjct: 84 RDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTDTGTFIINGAERVIVSQLVRSPS 143
Query: 132 IYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNL 191
+YY ++D G YT T+I + G LELE D K ++ R+ R +KI + VL A+G
Sbjct: 144 VYYSEKIDKNGKKGYTATVIPNRGAWLELETDAKDIVYVRIDRTRKIPVTVLLRALGFGS 203
Query: 192 NEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKF 251
++ + ++ + +L N E+ S E A+LE Y + G+P E+ L +F
Sbjct: 204 DQEIIDLLGEDEYLR--NTLEKDNTDSAEKALLEIYERLR--PGEPPTVENAKSLLDSRF 259
Query: 252 FQ-QRCELGEIGRRNMNRRLNL 272
F +R +L +GR +N++L++
Sbjct: 260 FDPKRYDLANVGRYKVNKKLHI 281
>emb|CAB56706.1| (Y16468) DNA-dependent RNA polymerase subunit beta [Listeria
monocytogenes]
Length = 1184
Score = 635 bits (1620), Expect = 0.0
Identities = 332/809 (41%), Positives = 505/809 (62%), Gaps = 34/809 (4%)
Query: 271 NLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALV 330
N I +N + P DI+++ + + +G DD++HL N+R+RSV +LLQ+QF + L
Sbjct: 367 NAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLS 426
Query: 331 RLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHG 390
R+E +VR + +I+ TPQ L+ P+ + + FFG LSQ +D+TNPL ++ H
Sbjct: 427 RMERVVRERM--SIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHK 484
Query: 391 RKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSI 450
R+LS LGPGGLT A + +RD+H SHYGR+CPI+T EG N+GLI SL+ A++ ++G I
Sbjct: 485 RRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFI 544
Query: 451 ESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTI 508
E+P+ + + R+ + YL+ ++ Y++A N QG E+ V AR+R E L +
Sbjct: 545 ETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSENLAV 604
Query: 509 AWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLE 568
E++ + Q S+ + IPF+E++D+NRALM +NMQRQAVPL E VGTG+E
Sbjct: 605 EKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGME 664
Query: 569 RQVALDSGTLAIAEHEGKIIYKDTNKI------VLFGSGETLSVPLVIYR---RSNKNTC 619
A DSG A+H+G + + + +I ++ G T + R RSN+ TC
Sbjct: 665 HVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTC 724
Query: 620 MHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVY 679
+Q+ V G + +G+IL +G + GEL+LG+NVLVA+M W+GYN EDA+++S+RLV
Sbjct: 725 YNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSERLVK 784
Query: 680 EDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILV 739
+D+YTS HI ++E + T GPE +T IP++ LR+LD+ G++ +G+ V+ D+LV
Sbjct: 785 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 844
Query: 740 GKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGY 799
GK+TP+ E E+RLL AI G + ++T L++P GG G V+DV+ ++ G
Sbjct: 845 GKVTPKGVTE--LTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDEL 902
Query: 800 NP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLG 856
P + + +YI+QKR+I GDK+AGRHGNKG++S+IL +DMP++ DG PVD++ NPLG
Sbjct: 903 PPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLG 962
Query: 857 VPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWI 916
VPSRMN+GQ+ E LG+A L H FD E++ V+S + +A
Sbjct: 963 VPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEED-----VWSTVEEAGMARD---- 1013
Query: 917 FEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKG 976
K+ ++DGR+G F+ + +G Y++KL H VDDK+H RS+G Y+LVTQQPL G
Sbjct: 1014 ------AKTILYDGRSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 1067
Query: 977 RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAP 1036
+A+ GGQR GEMEVWALE +G A+ LQE+LT KSD + R + + G ++ +P P
Sbjct: 1068 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEP-GVP 1126
Query: 1037 ESFRLLVRELRSLALELNHFLVSEKNFRI 1065
ESF++L++EL+SL +++ E+ +
Sbjct: 1127 ESFKVLIKELQSLGMDVKMLSADEEEIEM 1155
Score = 131 bits (325), Expect = 6e-29
Identities = 79/262 (30%), Positives = 140/262 (53%), Gaps = 7/262 (2%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
LP L +IQ + F+D GL E IED + + F++ Y L EP +++
Sbjct: 29 LPNLIEIQTASYQWFLDEGLREMFRDISPIEDFAGNLSLE-FID-YDLGEPKYSVEESKN 86
Query: 72 ESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPG 131
Y++ L V LI K + +++Q +F+G+ PLM +GT I+NG R++++Q+++SPG
Sbjct: 87 RDANYAAPLRVKLRLINKETGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPG 146
Query: 132 IYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNL 191
+Y+ +LD G + T+I + G LE E D K + R+ R +K+ + VL A+G
Sbjct: 147 VYFNGKLDKNGKKGFGSTVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGS 206
Query: 192 NEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKF 251
++ + ++ +L N E+ + E A+LE Y + G+P ++ L +F
Sbjct: 207 DQEIIDLIGDNDYLR--NTLEKDNTDNAEKALLEIYERLR--PGEPPTVDNARSLLVSRF 262
Query: 252 FQ-QRCELGEIGRRNMNRRLNL 272
F +R +L +GR +N++L+L
Sbjct: 263 FDPKRYDLASVGRYKINKKLHL 284
>gb|AAK05898.1|AE006409_8 (AE006409) DNA-directed RNA polymerase beta chain (EC 2.7.7.6)
[Lactococcus lactis subsp. lactis]
Length = 1196
Score = 635 bits (1619), Expect = e-180
Identities = 336/780 (43%), Positives = 495/780 (63%), Gaps = 28/780 (3%)
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
L P D+++ + +G+ +G +DD++HL N+RIRSV +LLQ+Q + L R+E ++R +
Sbjct: 380 LTPADVISNISYWLGLAEGIGKVDDIDHLGNRRIRSVGELLQNQVRIGLSRMERVIRERM 439
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
+ + TPQ L+ P+T + + FFG LSQ +D+ NPL+++ H R+ S LGPGG
Sbjct: 440 SSSENENI--TPQGLINIRPVTASIKEFFGSSQLSQFMDQHNPLSELSHKRRFSALGPGG 497
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
++ AS+ +RD+H +HYGR+CPI+T EG N+GLI +L+ +A++ +G I SP+ +
Sbjct: 498 ISRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYAKVNEYGFIMSPYRRVDRV 557
Query: 461 SKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSI 518
+ + + YL+ ++ Y +A N + V AR+ + + +
Sbjct: 558 NGVVTDEVEYLTADEEDNYTVAQANSPLTEDSRFANETVMARHTGNNIEVEASTADYMDV 617
Query: 519 FSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTL 578
Q ++ A+ IPF+E++D+NRALM +NMQRQAVPL +GTG+E Q A DSG
Sbjct: 618 SPKQVIAVAAACIPFLENDDSNRALMGANMQRQAVPLIDPHAPWIGTGMEHQTARDSGAA 677
Query: 579 AIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQI 637
IA+H G + Y D N+I V SGE + YRRSN T +Q+ + G+ +++G I
Sbjct: 678 LIAKHAGVVEYVDGNEIRVRRTSGELDIYNITKYRRSNSGTSYNQRPLARLGEKVEKGDI 737
Query: 638 LADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHV 697
+ADG + GE++LG+N LVAYM WEGYN EDAV++S+RL+ +D+YTS I +YE +T
Sbjct: 738 IADGPSMENGEMALGQNPLVAYMTWEGYNFEDAVIMSERLIKDDVYTSIAIEEYESETRD 797
Query: 698 TSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDR 757
T GPE IT +IP++ L+NLD++G++ +G+ V+ GD+LVGK+TP+ E+ PE+R
Sbjct: 798 TKLGPEEITREIPNVGDEALKNLDESGIIRIGAEVKDGDLLVGKVTPK--GETDPTPEER 855
Query: 758 LLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGG----SGYNPETIHIYILQKRE 813
LLRAI G + ++T L++P GG G V DVR ++ G SG N + + ++I QKR+
Sbjct: 856 LLRAIFGEKAREVRDTSLRVPHGGGGIVHDVRVFTRENGDELPSGVN-KLVRVFIAQKRK 914
Query: 814 IKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGL 873
I VGDK+AGRHGNKG+VS I+ +DMPYL DG P+D++ NPLGVPSRMN+GQ+ E LG+
Sbjct: 915 IHVGDKMAGRHGNKGVVSNIVPMEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVMELHLGM 974
Query: 874 AGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTG 933
A L H FD AS + ++ + +A K+ ++DGRTG
Sbjct: 975 AARTLGIHIATPVFD-----GASDEDIWDTVKEAGMADD----------AKTVLYDGRTG 1019
Query: 934 TPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWAL 993
PF+ + +G Y++KL H VDDK+H RS G Y+LVTQQPL G+A+ GGQR GEMEVWAL
Sbjct: 1020 EPFDNRISVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1079
Query: 994 EGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
E +G A++LQE+LTYKSD + R + G I KP PESFR+LV+EL+SL L++
Sbjct: 1080 EAYGAANVLQEILTYKSDDVIGRTRAYEAIVKGERIPKP-GLPESFRVLVKELQSLGLDM 1138
Score = 105 bits (260), Expect = 3e-21
Identities = 74/268 (27%), Positives = 131/268 (48%), Gaps = 14/268 (5%)
Query: 12 LPGLNQIQFEGFCRFIDRGLT---EELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKD 68
LP L ++Q + F+D GL +E+F T E+EF Y++ P ++
Sbjct: 26 LPNLIEVQTLSYKNFLDEGLANVFKEMFPIDNFAGT-MELEFV----GYEMKTPKYTVEE 80
Query: 69 AVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQ 128
A YS+ +YV+ L+ K + ++ Q +F G+ PLM +GT I NG R++++Q+++
Sbjct: 81 ARAHDANYSAPIYVTFRLVNKETGELKTQEVFFGDFPLMTEMGTFINNGSERLIVSQLVR 140
Query: 129 SPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMG 188
SPG Y+ + D G+ + T I + G EL+ D K + R+ R +K++ + A+G
Sbjct: 141 SPGSYFHLKADKNGLESFGHTTIPNRGAWFELDTDAKGIGYVRIDRTRKLTFTTMLRALG 200
Query: 189 -SNLNEILENVCYPEIFLSFLNDKEEKKIGSK--ESAILEFYRQFACVGGDPVFPESLCR 245
+ EILE + ++ + K E A+ + Y + G+P +S
Sbjct: 201 FGSDEEILELLGETQLLTDTIAKDVHKNPADTRVEEALKDIYDRLR--PGEPKTADSSRG 258
Query: 246 ELQKKFFQ-QRCELGEIGRRNMNRRLNL 272
L +FF +R + +GR N++L L
Sbjct: 259 LLVARFFDPKRYDFAPVGRYKFNKKLAL 286
>sp|P47768|RPOB_STAAU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||S59951 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Staphylococcus
aureus
emb|CAA45512.1| (X64172) DNA-directed RNA polymerase beta chain [Staphylococcus
aureus]
prf||2107219B RNA polymerase:SUBUNIT=beta [Staphylococcus aureus]
prf||2113202B RNA polymerase:SUBUNIT=beta [Staphylococcus aureus]
Length = 1182
Score = 634 bits (1618), Expect = e-180
Identities = 343/807 (42%), Positives = 504/807 (61%), Gaps = 40/807 (4%)
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
+ P DI+ + + + +G DD++HL N+R+RSV +LLQ+QF + L R+E +VR +
Sbjct: 375 ITPADIIASMSYFFNLLSGIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERM 434
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
+I+ TPQ L+ P+ + + FFG LSQ +D+ NPL ++ H R+LS LGPGG
Sbjct: 435 --SIQDTESITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELTHKRRLSALGPGG 492
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
LT A +RD+H SHYGR+CPI+T EG N+GLI SL+ +AR+ +G IE+P+ ++
Sbjct: 493 LTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDLD 552
Query: 461 SKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSI 518
+ I + YL+ ++ Y++A N G + V R+R +A E++ +
Sbjct: 553 THAITDQIDYLTADEEDSYVVAQANSKLDENGRFMDDEVVCRFRGNNTVMAKEKMDYMDV 612
Query: 519 FSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTL 578
Q S + IPF+E++D+NRALM +NMQRQAVPL E VGTG+E A DSG
Sbjct: 613 SPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTGMEHVAARDSGAA 672
Query: 579 AIAEHEGKIIYKDTNKIVLFG---------SGETLSVPLVIYRRSNKNTCMHQKSQVQRG 629
A+H G++ + ++N+I++ GE PL ++RSN TC +Q+ V G
Sbjct: 673 ITAKHRGRVEHVESNEILVRRLVEENGVEHEGELDRYPLAKFKRSNSGTCYNQRPIVAVG 732
Query: 630 KCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIR 689
++ +ILADG + GE++LG+NV+V +M W+GYN EDAV++S+RLV +D+YTS HI
Sbjct: 733 DVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIE 792
Query: 690 KYEIQTHV-TSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAK 748
+YE + T GPE IT IP++ L+NLD G+V +G+ V+ GDILVGK+TP+
Sbjct: 793 EYESRRQRDTKLGPEEITRDIPNVSESALKNLDDRGIVYIGAEVKDGDILVGKVTPKGVT 852
Query: 749 ESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGS-----GYNPET 803
E + E+RLL AI G + ++T L++P G G V+DV+ +++ G G N +
Sbjct: 853 ELT--AEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVN-QL 909
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +YI+QKR+I VGDK+ GRHGNKG++SKI+ +DMPYL DGRP+D++ NPLGVPSRMN+
Sbjct: 910 VRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNI 969
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPG 923
GQ+ E LG+A L H FD + + V+S + +A G
Sbjct: 970 GQVLELHLGMAAKNLGIHVASPVFDGANDDD-----VWSTIEEAGMARD----------G 1014
Query: 924 KSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQ 983
K+ ++DGRTG PF+ + +G Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQ
Sbjct: 1015 KTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQ 1074
Query: 984 RVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLV 1043
R GEMEVWALE +G A+ LQE+LTYKSD R + + G IS+P PESFR+L+
Sbjct: 1075 RFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRP-SVPESFRVLM 1133
Query: 1044 RELRSLALELNHFLVSEKNFRIHRKEV 1070
+EL+SL L++ ++ E++ I +V
Sbjct: 1134 KELQSLGLDVK--VMDEQDNEIEMTDV 1158
Score = 132 bits (329), Expect = 2e-29
Identities = 90/326 (27%), Positives = 162/326 (49%), Gaps = 15/326 (4%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
LP L +IQ + + F+ GL E IED + + FV+ Y+L EP +++
Sbjct: 26 LPNLIEIQTKSYEWFLREGLIEMFRDISPIEDFTGNLSLE-FVD-YRLGEPKYDLEESKN 83
Query: 72 ESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPG 131
TY++ L V LI K + ++EQ +F+G+ PLM GT ++NG R++++Q+++SP
Sbjct: 84 RDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPS 143
Query: 132 IYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNL 191
+Y+ ++D G Y TII + G LE E D K ++ R+ R +K+ + VL A+G +
Sbjct: 144 VYFNEKIDKNGRENYDATIIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGFSS 203
Query: 192 NEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKF 251
++ + ++ +L N E+ + E A+LE Y + G+P E+ L +F
Sbjct: 204 DQEIVDLLGDNEYLR--NTLEKDGTENTEQALLEIYERLR--PGEPPTVENAKSLLYSRF 259
Query: 252 FQ-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLK 310
F +R +L +GR N++L+L N L + T ++ +++ L
Sbjct: 260 FDPKRYDLASVGRYKTNKKLHLKHRLFNQKLAEPIVNTETGEIV--------VEEGTVLD 311
Query: 311 NKRIRSVADLLQDQFGLALVRLENMV 336
++I + D+L+ + L V
Sbjct: 312 RRKIDEIMDVLESNANSEVFELHGSV 337
>emb|CAC10557.1| (Y16469) DNA-dependent RNA polymerase subunit beta [Listeria murrayi]
Length = 1062
Score = 633 bits (1615), Expect = e-180
Identities = 333/805 (41%), Positives = 507/805 (62%), Gaps = 34/805 (4%)
Query: 271 NLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALV 330
N I ++ + P DI+++ + + +G DD++HL N+R+RSV +LLQ+QF + L
Sbjct: 244 NAYIEEDVKHITPSDIVSSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLS 303
Query: 331 RLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHG 390
R+E +VR + +I+ TPQ L+ P+ + + FFG LSQ +D+TNPL ++ H
Sbjct: 304 RMERVVRERM--SIQDMSTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHK 361
Query: 391 RKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSI 450
R+LS LGPGGLT A + +RD+H SHYGR+CPI+T EG N+GLI SL+ +A++ ++G I
Sbjct: 362 RRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNKFGFI 421
Query: 451 ESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTI 508
E+P+ + + R+ + YL+ ++ Y++A N + G+ E+ V AR+R E L +
Sbjct: 422 ETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDDDGSFAEEEVMARFRSENLAV 481
Query: 509 AWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLE 568
E+V + Q S+ + IPF+E++D+NRALM +NMQRQAVPL E VGTG+E
Sbjct: 482 TKERVDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGME 541
Query: 569 RQVALDSGTLAIAEHEGKIIYKDTNKIVLF------GSGETLSVPLVIYR---RSNKNTC 619
A DSG A+++G + + + +I + G+ T + R RSN+ TC
Sbjct: 542 HVSAKDSGAAITAKYDGIVEHVEAKEIWIRRVSDVDGTEVTGGIDKYTLRKFVRSNQGTC 601
Query: 620 MHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVY 679
+Q+ V G + +G+ILA+G + GEL+LG+NVLVA+M W+GYN EDA+++S+RLV
Sbjct: 602 YNQRPNVAEGDRVVKGEILANGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSERLVK 661
Query: 680 EDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILV 739
+D+YTS HI ++E + T GPE +T IP++ LR+LD+ G++ +G+ V+ D+LV
Sbjct: 662 DDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLV 721
Query: 740 GKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGY 799
GK+TP+ E E+RLL AI G + ++T L++P GG G V+DV+ ++ G
Sbjct: 722 GKVTPKGVTE--LTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDEL 779
Query: 800 NP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLG 856
P + + +YI+QKR+I G K+AGRHGNKG++S+IL +DMP++ DG PVD++ NPLG
Sbjct: 780 PPGVNQLVRVYIVQKRKIHEGSKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLG 839
Query: 857 VPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWI 916
VPSRMN+GQ+ E LG+A L H FD E++ V+S + +A
Sbjct: 840 VPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEED-----VWSTVEEAGMARD---- 890
Query: 917 FEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKG 976
K+ ++DGRTG PF+ V +G Y++KL H VDDK+H RS+G Y+LVTQQPL G
Sbjct: 891 ------AKTILYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGG 944
Query: 977 RAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAP 1036
+A+ GGQR GEMEVWALE +G A+ LQE+LT KSD + R + + G ++ +P P
Sbjct: 945 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPQP-GVP 1003
Query: 1037 ESFRLLVRELRSLALELNHFLVSEK 1061
ESF++L++EL+SL +++ E+
Sbjct: 1004 ESFKVLIKELQSLGMDVKILSADEE 1028
Score = 83.1 bits (202), Expect = 2e-14
Identities = 48/163 (29%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 111 GTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWA 170
G I+NG R++++Q+++SPG+Y+ ++D G + + T+I + G LE E D K +
Sbjct: 3 GYFIINGAERVIVSQLVRSPGVYFNDKIDKNGRTGFGSTVIPNRGAWLEYETDAKDVVHV 62
Query: 171 RVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQF 230
R+ R +K+ + VL A+G ++ + + +L N E+ + E A+LE Y +
Sbjct: 63 RIDRTRKLPVTVLLRALGFGSDQDIIELVGDNEYLR--NTLEKDNTDNAEKALLEIYERL 120
Query: 231 ACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNL 272
G+P E+ L +FF +R +L +GR +N++L+L
Sbjct: 121 R--PGEPPTVENARNLLISRFFDPKRYDLASVGRYKINKKLHL 161
>gb|AAF73184.1|AF150880_1 (AF150880) RNA polymerase beta subunit [Leptospira biflexa]
Length = 1228
Score = 632 bits (1612), Expect = e-180
Identities = 394/1141 (34%), Positives = 612/1141 (53%), Gaps = 166/1141 (14%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVN 116
Y L EP ++ +++ L LI K++ I+EQ +++G++P+M GT I+N
Sbjct: 76 YVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKDTGEIREQVVYMGDLPVMTDHGTFIIN 135
Query: 117 GIYRIVINQILQSPGIYYQSELDHKGISV----YTGTIIS---DWGGRLELEIDRKARIW 169
G R+V++Q+ +SPGI++ + S Y G+ + D G L +IDRK +
Sbjct: 136 GAERVVVSQLHRSPGIFFSYDQVRDTFSARVIPYRGSWLEFEMDNKGILVAKIDRKKKFP 195
Query: 170 ARV-------------------SRKQKIS------------------ILVLSSA-----M 187
A + S K KI+ I+ + +
Sbjct: 196 ATLLVKAMGMGTNEEVLRLFYGSSKMKIAGANPKDLKRLIGRRTIADIINMETGEVMLDA 255
Query: 188 GSNLNE----ILENVCYPEIFLS----------FLNDKEEKKIGSKESAILEFYRQFACV 233
GS +NE IL + E+ + +N E+ + E A+ +F+
Sbjct: 256 GSKINEDNISILREMKVKEVDVIEFPKGKDNPVLINCLEKDGVNDYEDAVKKFHTIMR-- 313
Query: 234 GGDPVFPESLCRELQKKFFQQRC-ELGEIGRRNMNRRLNLDIPQ-----NNTFLLPRDIL 287
G+P E+ EL++ FF + +LG +GR +N + + P+ ++ L +DI+
Sbjct: 314 PGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFSKADDRVLRKQDII 373
Query: 288 TAADHLIGMKFRMGTL--DDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIR 345
+L+ + DD++HL N+RIRSV +L+ +Q L R+E +++ + ++
Sbjct: 374 ETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRVERVIKERM--TVQ 431
Query: 346 YKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRT 405
TPQ L++ P+T FFG LSQ +D+TNPL ++ H R+L+ LGPGGL+
Sbjct: 432 EPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLNALGPGGLSRDR 491
Query: 406 ASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIH 465
A F +RD+H SHYGR+CPI+T EG N+GLI S++ AR+ +G IE+P+ + +
Sbjct: 492 AGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPYRLVKNGKVQKQ 551
Query: 466 MLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFS 525
+ YL+ ++EY+ +A N +G +++ R+R +F + ++ + Q S
Sbjct: 552 VEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQYMDLAPLQVVS 611
Query: 526 IGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEG 585
+ +LIPF+EH+DANRALM SNMQRQAVPL E VGTG+E + A D+G +A+ +G
Sbjct: 612 VSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYDAGVCIVAKKDG 671
Query: 586 KIIYKDTNKIVL--FGSGETLSVPLVIYRRSNKNTCMHQK-------------------- 623
+ D + + S E + PL+ ++++N+ TC +QK
Sbjct: 672 VVSKVDATGVWIKEDQSKEIVHYPLIKFKKTNQGTCFNQKPNVSMLHTTTGGKVSKVSKE 731
Query: 624 -------------------SQVQRGKCIKRGQILADGAATVG------------------ 646
+VQ +K GQ + GA G
Sbjct: 732 RVEVTTPNGEKETHELLLSDEVQFHAVVKEGQEVGIGAPVAGQIIKGEKYGDFGQILQKG 791
Query: 647 -----------GELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQT 695
G L+LG+NVLVA+MPWEGYN EDA+LIS+R++ +D+++S HI ++EIQ
Sbjct: 792 TVLANGPSTDAGYLALGRNVLVAFMPWEGYNFEDAILISERIIKDDVFSSIHIEEFEIQA 851
Query: 696 HVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPE 755
T G E+IT IP+L R+LD++G++ +G+ V+ GDILVG +TP+ E+ PE
Sbjct: 852 RETKLGQEQITRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGMVTPK--GETDLTPE 909
Query: 756 DRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGG---SGYNPETIHIYILQKR 812
+LL +I G + +++ L++P G G VID++ ++ G + E + +Y+ +KR
Sbjct: 910 YKLLHSIFGEKAKEVRDSSLRMPNGFEGTVIDIKRYSRETGDELAAGVEEMVKVYVARKR 969
Query: 813 EIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLG 872
++ VGDK+AGRHGNKG+V++++A++DMPY++DG PVD+V NPLGVPSRMN+GQIFE LG
Sbjct: 970 KLLVGDKMAGRHGNKGVVARVMAQEDMPYMEDGSPVDIVLNPLGVPSRMNLGQIFETQLG 1029
Query: 873 LAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRT 932
A L ++ FD E + + + L + S K +++DGRT
Sbjct: 1030 FAAKKLGINFETPVFDGASEGDVNDFCKKAGLPENS---------------KFQLYDGRT 1074
Query: 933 GTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWA 992
G F V G Y+LKL H VDDKIH RS+G Y+LVTQQPL G+A+ GGQR+GEMEVWA
Sbjct: 1075 GEKFINQVFCGYIYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWA 1134
Query: 993 LEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALE 1052
LE +G +H LQE+LT KSD + R + + G KP PESF +LV+ELR LAL+
Sbjct: 1135 LEAYGASHTLQELLTIKSDDMLGRARIYEAIVKGIHSIKP-GIPESFNVLVQELRGLALD 1193
Query: 1053 L 1053
+
Sbjct: 1194 I 1194
>sp|P37870|RPOB_BACSU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||F69698 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Bacillus
subtilis
gb|AAB00972.1| (L24376) RNA polymerase beta-subunit [Bacillus subtilis]
emb|CAB11883.1| (Z99104) RNA polymerase (beta subunit) [Bacillus subtilis]
Length = 1193
Score = 623 bits (1590), Expect = e-177
Identities = 333/808 (41%), Positives = 501/808 (61%), Gaps = 38/808 (4%)
Query: 262 GRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLL 321
G + +N N I + + P DI+++ + + +G DD++HL N+R+RSV +LL
Sbjct: 357 GEQVINVIGNAYIEEEIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELL 416
Query: 322 QDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRT 381
Q+QF + L R+E +VR + +I+ TPQ L+ P+ + + FFG LSQ +D+T
Sbjct: 417 QNQFRIGLSRMERVVRERM--SIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQT 474
Query: 382 NPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIH 441
NPL ++ H R+LS LGPGGLT A +RD+H SHYGR+CPI+T EG N+GLI SL+ +
Sbjct: 475 NPLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSY 534
Query: 442 ARIGRWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPA 499
A++ R+G IE+P+ + + ++ + YL+ ++ Y++A N ++G + + A
Sbjct: 535 AKVNRFGFIETPYRRVDPETGKVTGRIDYLTADEEDNYVVAQANARLDDEGAFIDDSIVA 594
Query: 500 RYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSE 559
R+R E ++ +V + Q S + IPF+E++D+NRALM +NMQRQAVPL Q E
Sbjct: 595 RFRGENTVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPE 654
Query: 560 KCIVGTGLERQVALDSGTLAIAEHEGKII-----------YKDTNKIVLFGSGETLSVPL 608
VGTG+E DSG I +H G + Y++ + + G+ + S L
Sbjct: 655 APFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYS--L 712
Query: 609 VIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSE 668
+ + RSN+ TC +Q+ V G + +G+ILADG + GEL+LG+NV+V +M W+GYN E
Sbjct: 713 LKFVRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYE 772
Query: 669 DAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVIL 728
DA+++S+RLV +D+YTS HI +YE + T GPE IT IP++ LRNLD G++ +
Sbjct: 773 DAIIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRI 832
Query: 729 GSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDV 788
G+ V+ GD+LVGK+TP+ E E+RLL AI G + ++T L++P GG G + DV
Sbjct: 833 GAEVKDGDLLVGKVTPKGVTE--LTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDV 890
Query: 789 RWLHKKGGSGYNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDG 845
+ +++ G P + + +YI+QKR+I GDK+AGRHGNKG++SKIL +DMPYL DG
Sbjct: 891 KVFNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDG 950
Query: 846 RPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELY 905
P+D++ NPLGVPSRMN+GQ+ E +G+A L H FD E++ V+ L
Sbjct: 951 TPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREED-----VWETLE 1005
Query: 906 QASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGH 965
+A K+ ++DGRTG PF+ V +G Y++KL H VDDK+H RS+G
Sbjct: 1006 EAGMSRD----------AKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGP 1055
Query: 966 YALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTII 1025
Y+LVTQQPL G+A+ GG GEMEVWALE +G A+ LQE+LT KSD + R + +
Sbjct: 1056 YSLVTQQPLGGKAQFGGHGFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVK 1115
Query: 1026 GGTISKPVDAPESFRLLVRELRSLALEL 1053
G + +P PESF++L++EL+SL +++
Sbjct: 1116 GDNVPEP-GVPESFKVLIKELQSLGMDV 1142
Score = 134 bits (335), Expect = 4e-30
Identities = 78/262 (29%), Positives = 143/262 (53%), Gaps = 7/262 (2%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
LP L +IQ + F+D GL E IED + + F++ Y L EP +++
Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTGNLSLE-FID-YSLGEPKYPVEESKE 83
Query: 72 ESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPG 131
+TYS+ L V LI K + +++Q +F+G+ P+M GT I+NG R++++Q+++SP
Sbjct: 84 RDVTYSAPLRVKVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPS 143
Query: 132 IYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNL 191
+Y+ ++D G +T T+I + G LE E D K ++ R+ R +K+ + VL A+G
Sbjct: 144 VYFSGKVDKNGKKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGS 203
Query: 192 NEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKF 251
++ + ++ +L DK+ + + + A+LE Y + G+P E+ L +F
Sbjct: 204 DQEILDLIGENEYLRNTLDKDNTE--NSDKALLEIYERLR--PGEPPTVENAKSLLDSRF 259
Query: 252 FQ-QRCELGEIGRRNMNRRLNL 272
F +R +L +GR +N++L++
Sbjct: 260 FDPKRYDLANVGRYKINKKLHI 281
>sp|P47767|RPOB_SPICI DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||T43230 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Spiroplasma
citri
gb|AAC44217.1| (U25815) DNA-dependent RNA polymerase beta subunit [Spiroplasma
citri]
Length = 1302
Score = 617 bits (1574), Expect = e-175
Identities = 326/794 (41%), Positives = 495/794 (62%), Gaps = 24/794 (3%)
Query: 270 LNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLAL 329
+ +D + ++ D+L +L+ + +G +DD++HL N+R+R++ +LLQ+QF + L
Sbjct: 444 IGIDPNATDEYVTVPDVLATFSYLLNLTDGIGEVDDIDHLGNRRVRTIGELLQNQFRIGL 503
Query: 330 VRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVH 389
+R+E V+ + + +K+ P N++ + PL+ FF L LSQ +D+TNPL ++ +
Sbjct: 504 LRIEKNVKEKMSTSNLFKM--KPSNIINNKPLSAIIGEFFNLSQLSQFMDQTNPLAELTN 561
Query: 390 GRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGS 449
R+L+ LGPGGL+ A +RD+H SHYGRICPI+T EG N+GLI +LA +A+I +G
Sbjct: 562 KRRLTALGPGGLSRERAGLEVRDVHYSHYGRICPIETPEGPNIGLINNLATYAKINSYGF 621
Query: 450 IESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIA 509
IE+P+ + + YL+ ++ Y++A N ++G ++ V AR++ E +
Sbjct: 622 IETPYRRVIGCKVTMENDYLTADEEKNYVVAQANIRLSDKGEILDEQVVARFQGENIIAG 681
Query: 510 WEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLER 569
V + Q SI S IPF+E++DANRALM +NMQRQA+PL VGTG+E
Sbjct: 682 RNDVDYVDVSPKQIVSIATSCIPFLENDDANRALMGANMQRQAIPLIAPNSPYVGTGVEY 741
Query: 570 QVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRG 629
A DSG +++++G + + D +IVL + L + RSN+ T + V++G
Sbjct: 742 AAARDSGLAIVSQYDGIVDFVDATRIVLKTKEGLKNYNLDTFVRSNQGTSLTHVPLVRQG 801
Query: 630 KCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIR 689
+ +++GQ+LADG + GEL+LG+NV+VA+ W GYN EDA+++S+RLV ED++TS HI
Sbjct: 802 QKVEKGQVLADGPSIDKGELALGQNVVVAFTTWNGYNYEDAIIVSERLVSEDVFTSIHIE 861
Query: 690 KYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKE 749
+Y I+ T GPE IT +IP++ + + LD +GLVI+G+ V+ GDILVGK+TP+ +
Sbjct: 862 EYTIERRQTKQGPEEITREIPNISENARKFLDDDGLVIIGTEVKPGDILVGKVTPK--GQ 919
Query: 750 SSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWL--HKKGGSGYNPETIHIY 807
+ +PED+LL+AI G + K+ L++P GG G + ++ K S E I IY
Sbjct: 920 TQLSPEDKLLQAIFGEKSKNVKDNSLRVPNGGEGIIQAIKRFPREKYEVSADVLEVIKIY 979
Query: 808 ILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIF 867
I+QKR+I+ GDK+AGRHGNKG++SKIL +DMP+++DG PVD++ NPLGVPSRMN+GQ+
Sbjct: 980 IVQKRKIQEGDKMAGRHGNKGVISKILPLEDMPHMEDGTPVDIMLNPLGVPSRMNIGQVL 1039
Query: 868 ECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRI 927
E LG+A L + FD +E + + +A + GK +
Sbjct: 1040 EIHLGMAAKKLGQKISTPVFDGMINEE-----LIEIMDKAGMKNF----------GKEVL 1084
Query: 928 FDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGE 987
DGRTG F+ PV +G Y+LKL H VDDK+H R+ G Y+L+TQQPL G+A+ GGQR GE
Sbjct: 1085 IDGRTGEKFDNPVSVGVMYMLKLSHMVDDKLHARNVGPYSLITQQPLGGKAQNGGQRFGE 1144
Query: 988 MEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELR 1047
MEVWALE +G AH L+E+LT KSD IK R + + I +P PESF +L RE++
Sbjct: 1145 MEVWALEAYGAAHTLREILTIKSDDIKGRTRAYESIVKDKKIPEP-GIPESFNVLTREIQ 1203
Query: 1048 SLALELNHFLVSEK 1061
L ++ ++ EK
Sbjct: 1204 GLGFNIH--MIDEK 1215
Score = 67.1 bits (161), Expect = 1e-09
Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 22/245 (8%)
Query: 95 QEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHK-GISVYTGTIISD 153
+E +F G+ PLM GT IVNG ++V++Q+++SPG YY+ +L+ K G +VY +I
Sbjct: 174 KEGEVFFGDFPLMTGKGTFIVNGSEKVVVSQLVRSPGAYYKIDLNRKNGENVYYVDLIPS 233
Query: 154 WGGRLELEIDRKA-----------RIWARVSRKQKISILVLSSAMGSNLNEILENVCYPE 202
G LE E D K + ++ + +K+S+ +A+G + L+ +
Sbjct: 234 RGTWLEFESDHKKIKVGKEEKFENVFYVKIDKSRKVSVANFLTALGIIKEDALDIFGDNK 293
Query: 203 IFLSF--LNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQR-CELG 259
+ S L+ + + A+ E Y++ G+ P+ + L F +R +L
Sbjct: 294 LVKSTYELDPYTGDILYDQSIAVQEIYKKIR--SGETATPDGATKYLYGLLFDKRKYDLT 351
Query: 260 EIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHL-KNKRIRSVA 318
+ GR + ++L+++ N +L DI ++ F GTL D + K K I
Sbjct: 352 KAGRFKLIQKLSVENRIYNK-ILAEDIKDVNGKVV---FTEGTLMDKEAINKLKGILKAG 407
Query: 319 DLLQD 323
LQ+
Sbjct: 408 ACLQE 412
>gb|AAC37118.1| (L48488) RNA polymerase beta subunit [Borrelia burgdorferi]
Length = 1154
Score = 615 bits (1568), Expect = e-174
Identities = 343/857 (40%), Positives = 514/857 (59%), Gaps = 32/857 (3%)
Query: 206 SFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFF-QQRCELGEIGRR 264
+F K+ K KES L Y G+P+ ++ +L+ FF ++R +LG +GR
Sbjct: 300 AFFALKDASKELPKESVSLAVYGSL--FPGEPISIDNAENDLKTIFFSERRYDLGRVGRY 357
Query: 265 NMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQ 324
++++ D + L DI+ HL+ + LDD++HL N+R+RSV +LL +
Sbjct: 358 KLSKKFGFD-DLTTSVLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNI 416
Query: 325 FGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPL 384
+ A+ R+E + + + + L PQ L++ P+ + + FF LSQ +D+ NPL
Sbjct: 417 YKGAMSRVEKIAKDRMSNKEVFNL--KPQELISVKPIVSAVKEFFATSQLSQFMDQVNPL 474
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
++ H R+L+ LGPGGL+ A F +RD+H +HYGR+CPI+T EG N+GLI SLA ++R+
Sbjct: 475 AELTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRV 534
Query: 445 GRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQE 504
+G +E+P+ ++ + YLS +E +IA N + GN E +V R +
Sbjct: 535 NDYGFLETPYRKVVNGVVTDQLEYLSAIDEEKNVIAQANRRFNSNGNDLEDLVSVRISGD 594
Query: 505 FLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVG 564
+ T + + + Q S+ ++LIPF+EHNDANRALM SNMQRQAVPL + IVG
Sbjct: 595 YTTTSPTNIDYMDVSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVG 654
Query: 565 TGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL-----FGSGETLSVPLVIYRRSNKNTC 619
TG+E VA DSG + A+ G++I ++KIV+ + + +V Y R+N++TC
Sbjct: 655 TGMESVVAKDSGVVVKAKRSGEVILATSSKIVVKPFEAENAKDLDEYHIVKYERTNQDTC 714
Query: 620 MHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVY 679
+Q V+ G+ ++RG+I+ADG AT GEL+LG N+L+ +PW G+N EDA+LISDR+V
Sbjct: 715 FNQSVLVKEGQKVERGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVK 774
Query: 680 EDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILV 739
ED+YTS HI+++ I+ T GPE++T IP++ +L LD+NG++ +G++V+ GDILV
Sbjct: 775 EDLYTSIHIKEFSIEVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILV 834
Query: 740 GKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKK--GGS 797
GK+TP+ E PE RLL +I G + K LK + + ++ + L K+ S
Sbjct: 835 GKVTPK--SEGDITPEFRLLTSIFGEKAKDVKNNSLKFLMVLKVLLLMFKGLPKRILVSS 892
Query: 798 GYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGV 857
E + +KR++K GDK+AGRHGNKG+V+KIL +DMPYL DG P+D+ NPLGV
Sbjct: 893 PGVEENLSSLAAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADGTPLDICLNPLGV 952
Query: 858 PSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIF 917
PSRMN+GQ+ E LGLAG L Y + F+ ++ KL + SK+
Sbjct: 953 PSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNEQIQEKLKTAGFNPTSKEI------ 1006
Query: 918 EPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGR 977
++DG TG PFE V++G Y+LKL H VDDK+H RS+G Y+LV+QQPL G+
Sbjct: 1007 ---------LYDGYTGEPFENEVMVGVIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGK 1057
Query: 978 AKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPE 1037
A+ GGQR+GEMEVWALE +G LT KSD + R ++ I+ G + PE
Sbjct: 1058 AQFGGQRLGEMEVWALEAYG-RRTPSRTLTVKSDDMSGRVKIY-ENIVKGVPTNVSGIPE 1115
Query: 1038 SFRLLVRELRSLALELN 1054
SF +L++ELR L L+L+
Sbjct: 1116 SFNVLMQELRGLGLDLS 1132
Score = 75.3 bits (182), Expect = 4e-12
Identities = 58/206 (28%), Positives = 101/206 (48%), Gaps = 25/206 (12%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFK--------------FP-KIEDTDQEIEFQ-LFVE 55
LP L +IQ + +F+ E++ K FP K + D +E++ ++E
Sbjct: 18 LPNLIEIQLNSYEKFLQLDKLEKVKKPLLNEGLESVFRNIFPIKSGNGDVALEYERYYIE 77
Query: 56 TYQLVEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIV 115
L + EK+ + +Y + L V L + + I+++ +++G IPLM T I+
Sbjct: 78 NVAL---NFTEKECKRKGQSYEAVLKVRLNLQFLTTGEIRQKDVYMGTIPLMTERATFII 134
Query: 116 NGIYRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIW-ARVSR 174
NG R+V++QI +SPG+ + E D +Y+ II G LE EID K I+ ++ R
Sbjct: 135 NGAERVVVSQIHRSPGVVFYKEKD-----LYSARIIPYRGSWLEFEIDSKKIIFIEKIDR 189
Query: 175 KQKISILVLSSAMGSNLNEILENVCY 200
K++ I + A+G + E + Y
Sbjct: 190 KKEYVITLFLRALGFDTREKIIETFY 215
>gb|AAD48492.1|AF172323_1 (AF172323) RNA polymerase beta subunit [Bacillus licheniformis]
Length = 1105
Score = 614 bits (1566), Expect = e-174
Identities = 325/769 (42%), Positives = 478/769 (61%), Gaps = 33/769 (4%)
Query: 262 GRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLL 321
G + +N N I + + P DI+ + + + +G DD++HL N+R+RSV +LL
Sbjct: 347 GEQTINVIGNAYIEEGVKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELL 406
Query: 322 QDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRT 381
Q+QF + L R+E +VR + +I+ TPQ L+ P+ + + FFG LSQ +D+T
Sbjct: 407 QNQFRIGLSRMERVVRERM--SIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQT 464
Query: 382 NPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIH 441
NPL ++ + R+LS LGPGGLT A +RD+H SHYGR+CPI+T EG N+GLI SL+
Sbjct: 465 NPLAELTYKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSF 524
Query: 442 ARIGRWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPA 499
A++ R+G IE+P+ + + ++ + YL+ ++ Y++A N + G+ + + A
Sbjct: 525 AKVNRFGFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANARLNDDGSFVDDSIVA 584
Query: 500 RYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSE 559
R+R E + ++V + Q S + IPF+E++D+NRALM +NMQRQAVPL Q E
Sbjct: 585 RFRGENTVVPKDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPE 644
Query: 560 KCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFG---------SGETLSVPLVI 610
IVGTG+E A DSG + I H G + + I + G L+
Sbjct: 645 SPIVGTGMEYVSAKDSGAVVICRHPGIVERVEAKNIWVRRYEEVDGQKVKGNLDKYSLLK 704
Query: 611 YRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDA 670
+ RSN+ TC +Q+ V G +++G+ILADG + GEL+LG+NV+V +M W+GYN EDA
Sbjct: 705 FVRSNQGTCYNQRPIVSVGDEVEKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDA 764
Query: 671 VLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGS 730
+++S+RLV +D+YTS HI +YE + T GPE IT IP++ LRNLD+ G++ +G+
Sbjct: 765 IIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGA 824
Query: 731 WVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRW 790
V+ GD+LVGK+TP+ E E+RLL AI G + ++T L++P GG G ++DV+
Sbjct: 825 EVKDGDLLVGKVTPKGVTE--LTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKV 882
Query: 791 LHKKGGSGYNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRP 847
+++ G P + + +YI+QKR+I GDK+AGRHGNKG++SKIL +DMPYL DG P
Sbjct: 883 FNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTP 942
Query: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQA 907
+D++ NPLGVPSRMN+GQ+ E LG+A L H FD E++ V+ L +A
Sbjct: 943 IDIMLNPLGVPSRMNIGQVLELHLGMAARRLGLHVASPVFDGAREED-----VWETLEEA 997
Query: 908 SKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYA 967
K+ ++DGRTG PF+ V +G Y++KL H VDDK+H RS+G Y+
Sbjct: 998 GMSRD----------AKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYS 1047
Query: 968 LVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKAR 1016
LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE+LT KSD + R
Sbjct: 1048 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGR 1096
Score = 135 bits (336), Expect = 3e-30
Identities = 78/262 (29%), Positives = 144/262 (54%), Gaps = 7/262 (2%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
LP L +IQ + F+D GL E IED + + F++ Y L EP +++
Sbjct: 16 LPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTGNLSLE-FID-YSLGEPKYPVEESKE 73
Query: 72 ESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPG 131
+TYS+ L V LI K + +++Q +F+G+ P+M GT I+NG R++++Q+++SP
Sbjct: 74 RDVTYSAPLRVKVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPS 133
Query: 132 IYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNL 191
+Y+ ++D G +T T+I + G LE E D K ++ R+ R +K+ + VL A+G
Sbjct: 134 VYFSGKVDKNGKKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGS 193
Query: 192 NEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKF 251
++ + ++ +L DK+ + + + A+LE Y + G+P E+ L+ +F
Sbjct: 194 DQEIIDLIGENEYLRNTLDKDNTE--NTDQALLEIYERLR--PGEPPTVENAKSLLESRF 249
Query: 252 FQ-QRCELGEIGRRNMNRRLNL 272
F +R +L +GR +N++L++
Sbjct: 250 FDPKRYDLASVGRYKINKKLHI 271
>gi|12545412 RNA polymerase subunit [Astasia longa]
emb|CAC24573.1| (AJ294725) RNA polymerase subunit [Astasia longa]
Length = 1076
Score = 596 bits (1519), Expect = e-169
Identities = 367/1095 (33%), Positives = 595/1095 (53%), Gaps = 79/1095 (7%)
Query: 9 MSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKD 68
+ T L IQ + F F+ G+ EL K KI ++ EI F + Y+ +P + +
Sbjct: 5 LKTYSNLLNIQSKSFKNFLKIGIINELKKIQKIIHSNFEINFHINALKYK--KPKLSSES 62
Query: 69 AVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQ 128
+ ++ TY+ ++ + + ++ +++ I IP M GT I NG RI+INQ+++
Sbjct: 63 CLIKNETYNIDIKIPMEIKYEGKIIFKKKYISFCKIPFMTEKGTFICNGNTRIIINQLIR 122
Query: 129 SPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSR-KQKISILVLSSAM 187
SPGIY + K + T+I G + ++ ++K + ++ + I + + +
Sbjct: 123 SPGIYIK-----KKKNCLLATLIPKTGSWITIKRNKKKENFIKIDKINNSIPLFTFLNIL 177
Query: 188 GSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCREL 247
G + +I + L+ N + KI K+ + + + +++ L
Sbjct: 178 GLSKKKIT-------LSLNKNNYSKNFKISKKKKIEIPTINLTQLSKENNI--KTIRNNL 228
Query: 248 QKKFFQQ-RCELGEIGRRNMNRRL-NLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDD 305
+F LG+ GR +N+++ + N L+P D L +++I +K +
Sbjct: 229 YNRFLNSDNYNLGDTGRFKINKKIYKTEFFTNKKILMPEDFLGIFNYMIKIKNINIKSNK 288
Query: 306 MNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQN----------- 354
++ LKNK + SV +L+Q++F + + + I + K N
Sbjct: 289 IDDLKNKIVLSVGELMQNKFNNIIKDIYTKIIEKINKFEQKKKQEEKYNKEKKEEKIKIN 348
Query: 355 ---LVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
+ S LT + F +PLSQ+L+ NPL+++ H RK+S LG GG+ AS +IR
Sbjct: 349 KTYFINSKNLTDNIKKFITTNPLSQLLNDLNPLSELTHKRKISTLGIGGIEKNKASTKIR 408
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERS--KRIHMLYL 469
+IH+SHYGRICPI+TSEG N GL+ SLA RI + G IESPF+++ + + K + ++
Sbjct: 409 EIHNSHYGRICPIETSEGKNAGLVLSLAKDIRINKHGFIESPFYKVIKGNIKKNKGIFFI 468
Query: 470 SPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
S ++ IA + L + N+ + + + EF +++ ++ S + Q+ SIG
Sbjct: 469 SSENEKNIKIAPCDILKNFKLNKNYGV---KNKNEFYYDSYKSINFISTSTDQFNSIGTG 525
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIY 589
+IPF+EHNDANR LM + MQ+QA+ L E ++ TG E + DS + IA+ G +IY
Sbjct: 526 IIPFLEHNDANRVLMGATMQKQALILKNKEPSLIETGREILINRDSKSTIIAKESGTVIY 585
Query: 590 KDTNKIVLFGSGETLSVP----------------------------LVIYRRSNKNTCMH 621
+ KI++ + L I ++N N
Sbjct: 586 SSSKKIIIQKKSKKSKFKNINLFKKYFKKKLKKNKKIKKHKHTIYLLNIDEKNNSNIYQT 645
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYED 681
+ S V++ IK+GQI+A+G ++ G L LGKN+LV Y+ WEGYN EDA++IS+RL ED
Sbjct: 646 RTSIVKKNDWIKKGQIIAEGIGSLNGNLCLGKNILVGYLSWEGYNFEDAIIISERLRNED 705
Query: 682 IYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGK 741
I TS H++K + E IT IP +++ ++NL+ NG++ +GS + +IL+G
Sbjct: 706 ILTSIHVKKCKSFLINHKEKKEEITKNIPDIKLKNVKNLNNNGIIKIGSKINGKEILIGI 765
Query: 742 LTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNP 801
+ ++ E L+ IL K + P G V + + +HK N
Sbjct: 766 IKKRLINY-----EVELIYEILSEY--ERKNISVLSPKNLVGIVTNTK-IHKIK----NC 813
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
I IYI +K++I++GDK++GRHGNKG++SKI+ DMPYL DG P+D++ NPLG+PSRM
Sbjct: 814 YQIEIYITEKKKIQIGDKLSGRHGNKGVISKIIPIVDMPYLPDGTPIDIILNPLGIPSRM 873
Query: 862 NVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEY 921
NVGQI+EC L L+ L Y+I PFDE + S L++ +L Q+ K+T W+F P
Sbjct: 874 NVGQIYECLLNLSAINLKERYKIQPFDEYQYKNNSEILIYKKLNQSRKKTKKEWLFNPNN 933
Query: 922 PGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQG 981
PGK+ +F+G+ G PF+Q + G YILKL+H ++KIH ++ +Y+ + +QP+KG++K G
Sbjct: 934 PGKTILFNGKNGKPFKQTISFGYSYILKLMHIAEEKIHAKTISNYSSIIKQPVKGKSKNG 993
Query: 982 GQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRL 1041
GQR GEMEVWA+EGFG A +LQE+LT KSD + + ++L + G ++SKP + PESF+L
Sbjct: 994 GQRFGEMEVWAIEGFGAAFLLQELLTIKSDDLHNKSQILKNLMNGLSMSKP-NVPESFKL 1052
Query: 1042 LVRELRSLALELNHF 1056
L+ EL+SL L +N F
Sbjct: 1053 LILELQSLGLNINIF 1067
>sp|P29398|RPOB_THEMA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||F44466 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Thermotoga
maritima (strain MSB8)
emb|CAA51246.1| (X72695) RNA polymerase, beta subunit [Thermotoga maritima]
gb|AAD35543.1|AE001724_1 (AE001724) DNA-directed RNA polymerase, beta subunit [Thermotoga
maritima]
Length = 1263
Score = 593 bits (1512), Expect = e-168
Identities = 325/776 (41%), Positives = 479/776 (60%), Gaps = 38/776 (4%)
Query: 304 DDMNHLKNKRIRSVADLLQDQFGLALVRLENMV--RGTICGAIRYKLIPTPQNLVTSTPL 361
D +HL NKR+R+V +L+Q +F R + + R T+ ++ I Q+L+ +
Sbjct: 485 DTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTLINSLSKVSI---QSLINIKSI 541
Query: 362 TTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRI 421
+T FF ++ LSQ +D+ NPL+++ H R++S +GPGGL + F R++H S YGR+
Sbjct: 542 ISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESKVFEARNVHYSQYGRL 601
Query: 422 CPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIAT 481
CPI+T EG N+G I SLAI+A+I +G + +P+ ++ ++YL + +E Y I
Sbjct: 602 CPIETPEGANIGFITSLAIYAKIDEYGFLMTPYRKVVNGKVTDEVVYLRANEEEEYKIIP 661
Query: 482 GNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANR 541
+GN + V AR ++ + E+V + + Q FS+ ASLIPF+EH+DA+R
Sbjct: 662 ATTPVDEEGNIIPERVVARMGEDIRLVPKEEVDFMDVSTKQPFSVSASLIPFLEHDDASR 721
Query: 542 ALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSG 601
ALM SNMQRQAVPL ++E +VGTG+E + A +SG + +AEH+G + D ++V+ +
Sbjct: 722 ALMGSNMQRQAVPLLKTEAPLVGTGMEWEAAKNSGYVILAEHDGIVKEVDAARVVVHRTD 781
Query: 602 ETLSV-------------PLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGE 648
E ++ L+ + RSN++T ++QK V G +K+G +ADG AT GE
Sbjct: 782 ENGNLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVKKGDPIADGPATDMGE 841
Query: 649 LSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNK 708
L+LG+N+LVA+MPWEGYN EDA+L+S L+ ED++TS HI YE Q T GPE IT
Sbjct: 842 LALGRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIEVYETQARETRLGPEEITAD 901
Query: 709 IPHLEVHLLRNLDKNGLVILGSWVEAG------DILVGKLTPQMAKESSYAPEDRLLRAI 762
IP++ LL+NLD+NG++ +G++V + ILVGK+TP+ E PE++++R++
Sbjct: 902 IPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPK--GEGDTTPEEKIIRSV 959
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG----GSGYNPETIHIYILQKREIKVGD 818
G + K+T L+LP G GRVI V + G+G + + +Y+ ++ + +GD
Sbjct: 960 FGERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDIAELGAGV-LKLVRVYVASRKTLDIGD 1018
Query: 819 KVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVL 878
K+AGRHGNKG+VS IL ++DMP+L DG PV MV NPLG+PSRMNVGQI E LG +
Sbjct: 1019 KLAGRHGNKGVVSNILPKEDMPFLPDGTPVQMVLNPLGIPSRMNVGQILETHLGWLAKLT 1078
Query: 879 DRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYP-GKSRIFDGRTGTPFE 937
+ + F+ E E + LY+ K+ + P GK + DGRTG PF+
Sbjct: 1079 GKWFATPVFEGAKEDE-----ILRPLYEERKKRGLHLGDDENNPNGKVVLRDGRTGEPFD 1133
Query: 938 QPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFG 997
PV++G Y+LKLIH +KIH RS+G Y+L+ QQPL G++ GGQR+GEMEVWALE +G
Sbjct: 1134 NPVVVGYMYMLKLIHIAKEKIHARSTGPYSLIHQQPLGGKSHFGGQRLGEMEVWALEAYG 1193
Query: 998 VAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
AH L EMLT KSD IK R E + I +P PESFR+L++ELR LAL++
Sbjct: 1194 AAHTLAEMLTIKSDDIKGRNEAYKAILKNMNIPEP-GVPESFRVLIKELRGLALDV 1248
Score = 87.0 bits (212), Expect = 1e-15
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKI--EDTDQEIE-----FQLFVETYQLVEPSI 64
+P L +IQ + RF++ GL E L KF I + T ++ F L + + EP+I
Sbjct: 23 IPDLVEIQKSSYRRFLEEGLLEVLKKFSPIYSQATRSDLRKSDRGFALEFVSTRTGEPAI 82
Query: 65 KEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVIN 124
+ + LTYS +Y +A L S ++E+ +F+G IP M GT I+NG R+V+N
Sbjct: 83 DPLECKAKGLTYSVPIYATARLTDMKSGEMKEEEVFLGYIPYMTDRGTFIINGAERVVVN 142
Query: 125 QILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLS 184
QI+ SPG+Y+ SE + Y G + G LE+ +D + +K+++ +
Sbjct: 143 QIVVSPGLYFSSEYIDR--EEYGGYFLPSRGAWLEVILDPYDGVLYAGLDGKKVNLFLFL 200
Query: 185 SAMGSNLNE 193
+G +E
Sbjct: 201 KTIGYEKDE 209
>emb|CAC10527.1| (Y16472) DNA-dependent RNA polymerase subunit beta [Clostridium
argentinense]
Length = 907
Score = 566 bits (1443), Expect = e-160
Identities = 298/723 (41%), Positives = 458/723 (63%), Gaps = 29/723 (4%)
Query: 263 RRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQ 322
+ + +N IP++ ++ DI + +G+ + +G +DD++HL N+R+RSV +LLQ
Sbjct: 207 KEQIKSNINRLIPKH---IIKDDIYATVSYELGLTYGIGYIDDIDHLGNRRLRSVGELLQ 263
Query: 323 DQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTN 382
+QF + L R+E +V+ + I+ + I TPQ L+ P+ + FFG LSQ +D+TN
Sbjct: 264 NQFRIGLSRMERVVKERM--TIQDQDIITPQALINIRPVVAAIKEFFGSSQLSQFMDQTN 321
Query: 383 PLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHA 442
PL+++ H R+LS LGPGGL+ A F +RD+H SHYGR+CPI+T EG N+GLI SL+ +A
Sbjct: 322 PLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSYA 381
Query: 443 RIGRWGSIESPFFEISERSKRIH--MLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPAR 500
++ +G +E+P+ + +++ ++ + Y++ ++ Y++A N G ++ V R
Sbjct: 382 KVNEYGFMETPYRVVDKKTGKVTDTIRYMTADEEDNYLVAQANEPIDEDGMFVDKKVTVR 441
Query: 501 YRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEK 560
+ E + + E V L I Q S+ ++IPF+E++DA+RALM SNMQRQAVPL +++
Sbjct: 442 AKHEIVIVPKEDVDLIDISPRQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKTQT 501
Query: 561 CIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGE--TLSVPLVIYRRSNKNT 618
IVGTG+E + A+DSG L A+ G + Y N+I + + T + L+ ++RSN+ T
Sbjct: 502 PIVGTGIEYKAAVDSGVLPKAKSAGTVSYVSANEIRVKRDEDSGTDTYKLLKFKRSNQGT 561
Query: 619 CMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLV 678
C++Q+ V +G+ ++ G +LADG +T GE++LGKN+ + ++ WEGYN EDA+L+S+ LV
Sbjct: 562 CINQRPIVSKGEKVEVGTVLADGPSTDLGEIALGKNIRIGFITWEGYNYEDAMLVSEELV 621
Query: 679 YEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDIL 738
+DI+TS HI +YE + T GPE IT IP++ L+++D+ G++ +G+ V +GDIL
Sbjct: 622 KDDIFTSVHIEEYEAEARDTKLGPEEITRDIPNVGEEALKDIDERGIIRIGAEVRSGDIL 681
Query: 739 VGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSG 798
VGK+TP+ E+ E+RLLRAI G + ++T L++P G G ++DV+ K+
Sbjct: 682 VGKVTPK--GETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTKENADE 739
Query: 799 YNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPL 855
P + + YI QKR+I VGDK+AGRHGNKG++S++L +DMP+L DGRP+ + NPL
Sbjct: 740 LPPGVNQLVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPL 799
Query: 856 GVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPW 915
GVPSRMN+GQ+ E LG A L H FD + E + L QA
Sbjct: 800 GVPSRMNIGQVLEVHLGWAASELGWHIATPVFDGAXDTE-----IEDCLEQAGYNRD--- 851
Query: 916 IFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLK 975
GK+ ++DGRTG F+ V +G YILKL H VDDKIH RS+G Y+LVTQQPL
Sbjct: 852 -------GKTVLYDGRTGEAFDNRVTVGYMYILKLHHLVDDKIHARSTGPYSLVTQQPLG 904
Query: 976 GRA 978
G+A
Sbjct: 905 GKA 907
>emb|CAC10556.1| (Y16467) DNA-dependent RNA polymerase subunit beta [Leuconostoc
mesenteroides]
Length = 969
Score = 563 bits (1435), Expect = e-159
Identities = 306/728 (42%), Positives = 451/728 (61%), Gaps = 25/728 (3%)
Query: 271 NLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALV 330
N I +++ + P DIL ++ + ++ +G +DD++HL N+RIRSV +LLQ+QF + L
Sbjct: 261 NGHIDEDDRTVRPADILAGMNYFLNLQEGVGHVDDIDHLGNRRIRSVGELLQNQFRIGLT 320
Query: 331 RLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHG 390
R+E +VR + +I+ TPQ L+ P+ + FFG LSQ +D+TNPL ++ H
Sbjct: 321 RMERVVRERM--SIQDANTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQTNPLGEMNHK 378
Query: 391 RKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSI 450
R+LS LGPGGLT A +RD+H +HYGRI PI+T EG N+GLI SLA + RI ++G +
Sbjct: 379 RRLSALGPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSLATYGRINKYGFV 438
Query: 451 ESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTI 508
E+P+ + + ++ + YL+ ++ Y++A N G+ V AR+ +E +
Sbjct: 439 ETPYRRVDWTTHKVTDKIDYLTADEEDNYIVAQANSPLNEDGSFVHNTVMARFGEENIET 498
Query: 509 AWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLE 568
+++ + Q S+G + IPF+E++D+NRALM +NMQRQAVPL +VGTG+E
Sbjct: 499 PIDRIDYMDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQAVPLLDPHSPLVGTGIE 558
Query: 569 RQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQ 627
+ A DSG IA G++ Y D +I V G+ + L+ +RRSN +QK V
Sbjct: 559 YKAAHDSGVAMIARASGEVEYVDGRQIRVRREDGQLDTYELMKFRRSNGGKNYNQKPIVH 618
Query: 628 RGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFH 687
G+ I+ ++LADG + GEL+LG+N L+A+M W+GYN EDA+++++RLV ED+YTS H
Sbjct: 619 VGEHIEADEVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIVLNERLVREDVYTSIH 678
Query: 688 IRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMA 747
I +Y+ + T GPE +T +IP+ L++LD +G++ +G+ V GDILVGK+TP+
Sbjct: 679 IEEYDSEARDTKLGPEEMTREIPNTGEDQLKDLDADGIIRVGAEVHDGDILVGKVTPKGV 738
Query: 748 KESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPET---I 804
E S E+R+L AI G + ++T L++P GG G V +VR + G P +
Sbjct: 739 TELS--AEERVLHAIFGEKAREVRDTSLRVPHGGGGVVQNVRIYTPENGDELAPGVNMMV 796
Query: 805 HIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVG 864
+YI QKR+I+VGDK+AGRHGNKG VS ++ +DMPY+ DG P+D++ +P+GVPSRMN+G
Sbjct: 797 RVYIAQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPYMPDGTPIDILLSPMGVPSRMNIG 856
Query: 865 QIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGK 924
Q+ E LG A L H FD + E L + L Q GK
Sbjct: 857 QVLELHLGFAAKKLGIHVASPVFDGASDDEIEMALREAGLPQ---------------DGK 901
Query: 925 SRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQR 984
S ++DGRTG F++ V +G + +KL H VDDKIH RS G Y+LVTQQPL G+A+ GGQR
Sbjct: 902 SVVYDGRTGEAFDKRVGVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQR 961
Query: 985 VGEMEVWA 992
GEMEVWA
Sbjct: 962 FGEMEVWA 969
Score = 81.1 bits (197), Expect = 6e-14
Identities = 55/178 (30%), Positives = 97/178 (53%), Gaps = 6/178 (3%)
Query: 99 IFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRL 158
+F+G+ PLM GT I+NG R++++Q+++SPGIYY D G + T+I + G L
Sbjct: 1 VFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGIYYNQTTDKNGRPHFGTTVIPNRGAWL 60
Query: 159 ELEIDRKARIW-ARVSRKQKISILVLSSAMGSNLNEI-LENVCYPEIFLSFLNDKEEKKI 216
E E D KA + A ++R ++ LV + GS+ + I + + Y + ++ D +
Sbjct: 61 EYETDAKALLTSALIARVSAMTELVRALGFGSDSDIIDIFSDQYDALNMTLEKDVHKDMS 120
Query: 217 GSK-ESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNL 272
S+ E A+ + Y + G+P +S L +FF +R +L +GR +N++L+L
Sbjct: 121 DSRVEEALKDVYERLR--PGEPKTADSSRALLVARFFDPKRYDLASVGRYKINKKLSL 176
>emb|CAC10529.1| (Y16466) DNA-dependent RNA polymerase subunit beta [Clostridium
botulinum]
Length = 961
Score = 558 bits (1422), Expect = e-157
Identities = 293/700 (41%), Positives = 440/700 (62%), Gaps = 32/700 (4%)
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
++ DI ++ + + + +G DD++HL N+R+RSV +LLQ L L R+E +V+ +
Sbjct: 284 IIREDIYATINYELALSYDIGYKDDIDHLGNRRLRSVGELLQINLELGLSRMERVVKERM 343
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
I+ + + TPQ L+ P+ + + FFG LSQ +D+TNPL+++ H R+LS LGPGG
Sbjct: 344 --TIQDQEVITPQALINIRPVAASIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGG 401
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
L+ A F +RD+H SHYGR+CPI+T EG N+GLI SLA A++ +G IE+P+ I +
Sbjct: 402 LSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAKVNEYGFIETPYRRIDPK 461
Query: 461 SKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSI 518
+KR ++Y++ ++ Y+IA + G + V R ++E L + +V I
Sbjct: 462 NKRATNDIVYMTADEEDLYVIARSDEPIDENGYFIDDKVTVRAKEEVLVVPVSEVEYMDI 521
Query: 519 FSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTL 578
Q S+ ++IPF+E++DA+RALM SNMQRQAVPL + + IVGTG+E + A DSG L
Sbjct: 522 SPRQLVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAATDSGVL 581
Query: 579 AIAEHEGKIIYKDTNKIVLF--GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQ 636
A++ G ++Y ++I + G L+ ++RSN+ TC++Q+ V +G+ + +
Sbjct: 582 PKAKNAGTVVYVSADEIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKET 641
Query: 637 ILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTH 696
+LADG +T GE++LGKN+L+ ++ WEGYN EDA+LIS++LV ED++TS HI +YE +
Sbjct: 642 LLADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVKEDVFTSIHIEEYEAEAR 701
Query: 697 VTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPED 756
T GPE IT IP + L+++D+ G++ +G+ V +GDILVGK+TP+ E+ E+
Sbjct: 702 DTKLGPEEITRDIPDVGEEALKDIDERGIIRIGAEVRSGDILVGKVTPK--GETELTAEE 759
Query: 757 RLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNP---ETIHIYILQKRE 813
RLLRAI G + ++T L++P G G ++DV+ ++ G P + + YI QKR+
Sbjct: 760 RLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQKRK 819
Query: 814 IKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGL 873
I VGDK+AGRHGNKG++S++L +DMP+L DGRP+ + NPLGVPSRMN+GQ+ E LGL
Sbjct: 820 ISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGL 879
Query: 874 AGDVLDRHYRIAPFDERYEQ---EASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDG 930
A L H FD E + RK +SE GK+ ++DG
Sbjct: 880 AASKLGWHIATPVFDGAIESDIVDCLRKAGYSE------------------DGKTVLYDG 921
Query: 931 RTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVT 970
RTG PF+ V +G YILKL H VDDKIH RS+G Y+LVT
Sbjct: 922 RTGEPFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVT 961
Score = 93.2 bits (228), Expect = 1e-17
Identities = 54/180 (30%), Positives = 100/180 (55%), Gaps = 7/180 (3%)
Query: 101 IGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLEL 160
+G+ PLM GT I+NG R++++Q+++SPG+YY +D G +++ T+I + G LE
Sbjct: 1 MGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYDMTVDKTGSKLFSATVIPNRGAWLEY 60
Query: 161 EIDRKARIWARVSRKQKISILVLSSAMGSNLN-EILENVCYPEIFLSFLNDKEEKKIGSK 219
E D I+ R+ + +K+ I +L+ A+G + EI+E E + + E+ ++
Sbjct: 61 ETDSNNIIYVRIDKTRKLPITILARALGYGTDAEIIEFFGEDERLKATI---EKDNTKTR 117
Query: 220 ESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNN 278
E A+LE Y++ G+P +S ++ FF +R +L +GR N++L + + N
Sbjct: 118 EEALLEIYKRLR--PGEPPTVDSAESLIESLFFDAKRYDLSRVGRYKFNQKLAIHLRITN 175
>gi|12045200 DNA-directed RNA polymerase, subunit beta (rpoB) [Mycoplasma
genitalium]
sp|P47583|RPOB_MYCGE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||G64237 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Mycoplasma
genitalium
gb|AAC71566.1| (U39715) DNA-directed RNA polymerase, subunit beta (rpoB) [Mycoplasma
genitalium]
Length = 1390
Score = 544 bits (1386), Expect = e-153
Identities = 322/855 (37%), Positives = 486/855 (56%), Gaps = 88/855 (10%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTIC--- 341
D + + ++I + + +G DD++HL NKR++ + +L+ + R+E ++ +
Sbjct: 502 DFIASISYVINLPYGIGKYDDIDHLGNKRVKLINELITAKLESGFTRMERFLKEKLTIAD 561
Query: 342 GAIRYKLIP--------------TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQI 387
G R + I T ++L+ S P+ + FF H L+Q LD NPL+++
Sbjct: 562 GVNRGQQINEEGQVIEQGEKKELTIKSLINSKPIQIVIKDFFNTHQLTQFLDHQNPLSEL 621
Query: 388 VHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRW 447
+ R++S +GPGG++ + IRD+H S YGRICPI+T EG+N+GLI SLA A+I
Sbjct: 622 SNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIETPEGMNIGLIMSLASFAKIDEN 681
Query: 448 GSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLA--LNQGNQEEQIVPARYRQEF 505
G + +P+ +I + YL+ R++ ++IA + L N ++ + RYR
Sbjct: 682 GFLMAPYRKIKAGVITDEVEYLTALREDEHIIAEISSLVNISNDNKILDKEIIGRYRSMQ 741
Query: 506 LTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565
++ + Q SIG+SLIPF+E++D+ RALM +NMQRQA PL + VGT
Sbjct: 742 GLYDPLKIDYIDVAPHQVVSIGSSLIPFLENDDSARALMGTNMQRQAYPLIKPYAPAVGT 801
Query: 566 GLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFG-SGETLSVPLVIYRRSNKNTCMHQKS 624
G E ++A DSG + G + Y D +KI++ S + +V LV + RSN+NTC + K
Sbjct: 802 GQEHKIASDSGLTMSSPCSGVVSYVDNSKIIITSDSSKKETVNLVKFERSNQNTCYNHKP 861
Query: 625 QVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYT 684
V+ G+ + + +I+ DG A EL+LG+NVLVA+ W GYN EDA++IS+RLV EDI T
Sbjct: 862 IVEIGQRVNKDEIIVDGPAVNKSELALGQNVLVAFTTWNGYNYEDAIVISERLVKEDILT 921
Query: 685 SFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTP 744
S I +Y Q T NG E+IT IP++ R LD+NG++++G+ V+ GD+LVGK++P
Sbjct: 922 SLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDENGIIMVGAEVKEGDVLVGKVSP 981
Query: 745 QMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNP--- 801
+ E S PE++L +AI V +++ LK+ GG G V V+ G N
Sbjct: 982 KGQVEVS--PEEKLFKAIFPESVQNVRDSSLKVSHGGDGIVSAVKRFSIANGDELNDGVI 1039
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
E I +Y++QKR+I++GDK+AGRHGNKG++SK++ +DMP+L+DG PVD++ NPLGVPSRM
Sbjct: 1040 EMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPIEDMPHLEDGTPVDILLNPLGVPSRM 1099
Query: 862 NVGQIFECSLGLAGDVLDRHYRIAP-FDE------------------------------- 889
N+GQIFE LG A L I+ FD+
Sbjct: 1100 NIGQIFETHLGYAAHKLAVRSLISSCFDQNKAKEFAIEINQPQARVERLIKGLKNQINDR 1159
Query: 890 --RYEQEASRKLVFSELYQASKQTSNPW------IFEPEYPG------------------ 923
+ E+EA KL S++ K+ + I P + G
Sbjct: 1160 NIKSEKEALEKLDNSDISLVLKEIGMSFDDLIYKIATPIFQGVNFLDLQDVMQEAGLDPQ 1219
Query: 924 ----KSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAK 979
K ++ DGR+G PFE+P+ +G Y++KL H VDDKIH R+ G Y+ +TQQPL G+++
Sbjct: 1220 KNQGKFKLIDGRSGMPFERPISLGIMYMMKLNHMVDDKIHARAVGPYSKITQQPLGGKSQ 1279
Query: 980 QGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESF 1039
GGQR GEMEVWALE +G A+ LQE+LT KSD ++ R + G +P PESF
Sbjct: 1280 NGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNRAYAAIVKGAAFPEP-GIPESF 1338
Query: 1040 RLLVRELRSLALELN 1054
+LL +EL+ LAL ++
Sbjct: 1339 KLLTKELQGLALSVS 1353
Score = 56.6 bits (134), Expect = 2e-06
Identities = 38/133 (28%), Positives = 63/133 (46%), Gaps = 14/133 (10%)
Query: 13 PGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYE 72
P L IQ + + +F+D L + + + I+ + + + EP E + +
Sbjct: 31 PNLADIQIKSYQKFLDHDLEKLIASYFPIKSPNDR--YTINFRGLHRTEPERDEAQSRAQ 88
Query: 73 SLTYSSELYVSAGLI----------WKNSKNIQEQT--IFIGNIPLMNSLGTSIVNGIYR 120
S TY +Y L+ K+ KNI T +F+ ++PL+ G I+NGI +
Sbjct: 89 SKTYEVGIYADLELVDNDKGTVKKARKSKKNIASNTNGVFLASMPLITHDGVFIINGIEK 148
Query: 121 IVINQILQSPGIY 133
VI+QI +SPGIY
Sbjct: 149 FVISQITRSPGIY 161
>pir||C82923 DNA-directed RNA polymerase beta subunit UU187 [imported] -
Ureaplasma urealyticum
gb|AAF30594.1|AE002118_4 (AE002118) DNA-directed RNA polymerase beta subunit [Ureaplasma
urealyticum]
Length = 1434
Score = 532 bits (1356), Expect = e-150
Identities = 318/862 (36%), Positives = 483/862 (55%), Gaps = 99/862 (11%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGA- 343
D++ ++ + + +G DD++HL NKR++ + +LL+ + ++ R+E + + +
Sbjct: 514 DLVATTSYIYNLNYEIGEFDDIDHLGNKRLKLIHELLRARIATSMARIEKFINEKLAISD 573
Query: 344 --------IRYKLIPTP---------------------QNLVTSTPLTTTYESFFGLHPL 374
+ K I T ++++ + + + FF H L
Sbjct: 574 GSSNNITNVNDKGIDTELDREIEESDMSDEEKKKAISVKSIINTKQFQSLVKDFFNSHQL 633
Query: 375 SQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGL 434
Q +D+ NPL ++ + R++S +GPGG++ + IRD+H SH RICPI+T EG+N+GL
Sbjct: 634 IQFIDQQNPLAELTNKRRISAMGPGGISREDPNLDIRDVHHSHSSRICPIETPEGMNIGL 693
Query: 435 IGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNY-LALNQGNQE 493
I SLA A++ G I +P++ + + + YL+ D+ Y+IA + L N+ +
Sbjct: 694 IMSLASLAKVDENGFIVAPYYVVEDGVVKEDYKYLTAHEDDNYIIAESSVQLDENKRILD 753
Query: 494 EQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAV 553
EQ+V ARYR + +V I Q SI AS IPFIE++D RALM SNMQRQA
Sbjct: 754 EQVV-ARYRGSTGLFSPNEVDFIDIVPKQVVSIAASAIPFIENDDGARALMGSNMQRQAT 812
Query: 554 PLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLS-VPLVIYR 612
PL + IVGTG E ++A DSG +A+++G + + D+ KI++ + L L+ YR
Sbjct: 813 PLIKPYAPIVGTGTEFKIAHDSGMAVVAKNDGVVEFVDSQKIIIRNDNDKLDDYKLIKYR 872
Query: 613 RSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVL 672
+SN++TC +Q V+ G+ + + + + DG A GEL+LG+N+LV Y W GYN EDA++
Sbjct: 873 KSNQDTCNNQIPIVKVGQRVHKSETIGDGPAMQNGELALGRNILVGYTTWRGYNFEDAII 932
Query: 673 ISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWV 732
IS+RLV +D++TS HI ++ IQ T NG E IT +P++ R LD G+V++G+ V
Sbjct: 933 ISERLVDQDVFTSIHIDEHTIQCMKTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEV 992
Query: 733 EAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLH 792
GD+LVGK TP+ E+ APEDRLL+ I G + T K++ LK+ G G V V+ +
Sbjct: 993 HEGDVLVGKTTPRGNVET--APEDRLLQTIFGDKSKTVKDSSLKVKHGQEGIVAAVKRIK 1050
Query: 793 KKGGSGYN-----PETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRP 847
+G E I +YI+QKR+I+VGDK+AGRHGNKGIVSK++ QDMP+L+DG P
Sbjct: 1051 SSDENGSELPDDVIEIIKVYIVQKRKIQVGDKMAGRHGNKGIVSKVVPIQDMPFLKDGTP 1110
Query: 848 VDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRH--YRIAPFDERYEQEAS----RKLVF 901
+D++ NPLGVPSRMN+GQI E LG A + + +IA YE+ S +++
Sbjct: 1111 LDIMLNPLGVPSRMNIGQILELHLGYAAAEIGKKQLIQIAIDQLGYEKYISLFGINEIIA 1170
Query: 902 SELYQ---------ASKQTSNPWIFEPEYPGK--------------SRIFDG-------- 930
+LY+ +KQ + + + K + +FDG
Sbjct: 1171 KKLYENISNLIKHKQAKQAKDIDLIDVTIILKELGLSYDDIGIKISTPVFDGANHDDIVS 1230
Query: 931 ---------------------RTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALV 969
RTG PF+ + +G Y+LKL H VDDKIH RS G Y+ +
Sbjct: 1231 IMNEANIDIENNKGKQVLYDGRTGEPFDGLISVGLTYMLKLDHMVDDKIHSRSVGPYSKI 1290
Query: 970 TQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTI 1029
TQQPL G+++ GGQR GEMEVWALE +G A+ L E+LT KSD ++ R + I G +
Sbjct: 1291 TQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLLEILTIKSDDVQGRNQAYNAIIKGHDV 1350
Query: 1030 SKPVDAPESFRLLVRELRSLAL 1051
PESF+LL ++++ L L
Sbjct: 1351 VAD-GMPESFKLLTKQMQGLGL 1371
Score = 63.6 bits (152), Expect = 1e-08
Identities = 79/330 (23%), Positives = 142/330 (42%), Gaps = 51/330 (15%)
Query: 13 PGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYE 72
P L +IQ E F RF+++ L E + ++ + + L + ++ +P+ E E
Sbjct: 31 PNLLEIQVESFKRFMEKDLKEVISSIFPLKSPQGK--YTLAFKGLKIKQPTKDESACRDE 88
Query: 73 SLTYSSELYVS-------AGLIWKNSKNIQ--EQTIFIGNIPLMNSLGTSIVNGIYRIVI 123
T+ + +Y+ G + + +N + E I++G IP M GT ++NGI + VI
Sbjct: 89 GKTFETPIYIDLELTDNYTGEVKRAQRNTKTGEDGIYLGAIPKMTEKGTFVINGIEKFVI 148
Query: 124 NQILQSPGIYY----QSELDHKGISVYTGTIISDWGGRLELEI-----DR-KARIWARVS 173
+QI++SPGIY +L+ ++ G I + + L + DR +I AR S
Sbjct: 149 SQIVRSPGIYVLGKSSIKLNGSRKRLFEGKICEIYPSKGTLMLGYIPKDRHNIQIVARDS 208
Query: 174 ---RKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQF 230
Q S+ L A G EIL+ F N+KE +ES +E Y
Sbjct: 209 SGDNAQTFSVTTLLKAFGLTSAEILK---------IFNNEKE-----IRESLEIEKY--- 251
Query: 231 ACVGGDPVFPESLCRELQKKFFQQRCELGE-IGRRNMNRRLNLDIPQNNTFLLPR----- 284
+ +F S E+ K + ++ E RR N +L + + + LL +
Sbjct: 252 ---APEYIFENSQENEIIFKIYSDAHDIHEKADRRESNNKLKEEYIEQGSPLLSKLKQLI 308
Query: 285 -DILTAADHLIGMKFRMGTLDDMNHLKNKR 313
+ + D + + ++D + +KN +
Sbjct: 309 FNYVEKNDEIDALLHENKDVEDASFIKNNK 338
>emb|CAC10572.1| (Y16471) DNA-dependent RNA polymerase subunit beta [Weissella
paramesenteroides]
Length = 929
Score = 502 bits (1279), Expect = e-141
Identities = 268/681 (39%), Positives = 416/681 (60%), Gaps = 25/681 (3%)
Query: 283 PRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICG 342
P DI+ ++ + + +GT DD++HL N+RIR V +LLQ+ F + L R+E +VR +
Sbjct: 268 PADIIAGMNYFLNLPLGVGTTDDIDHLGNRRIRRVGELLQNTFRIGLSRMERVVRERM-- 325
Query: 343 AIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLT 402
+I+ TPQ L+ P+ + FFG LSQ +D+TNPL ++ + R+LS LGPGGLT
Sbjct: 326 SIQDPDTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQTNPLGELTNKRRLSALGPGGLT 385
Query: 403 GRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSK 462
A + +RD+H +HYGR+ PI+T EG N+GLI SLA + R+ ++G IE+P+ + +
Sbjct: 386 RDRAGYEVRDVHYTHYGRMDPIETPEGPNIGLINSLATYGRVNKYGFIETPYRRVDWTTH 445
Query: 463 RI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
++ + YL+ ++ +++A GN + G+ V AR E + + +QV +
Sbjct: 446 KVTDRIDYLTADEEDNFVVAQGNSVLNEDGSFATDTVLARKSDENVEVPIDQVDYMDVSP 505
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q ++ + IPF+ ++D+NRALM +NM+RQAVPL ++GTG+E + A D+G I
Sbjct: 506 KQIVAVATAAIPFLXNDDSNRALMGANMRRQAVPLIDPHAPLIGTGIEYKAAHDAGVAII 565
Query: 581 AEHEGKIIYKDTNKI-VLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILA 639
+++ G + Y D +I V G L+ +RRSN +Q+ V+ G + ++LA
Sbjct: 566 SQYPGVVEYVDGREIRVRREDGSLDKYALMKFRRSNAGKNYNQRPIVKVGDKVDADEVLA 625
Query: 640 DGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTS 699
DG + GEL+LG+N L+A+M W+GYN EDA++I++RL+ +D+YTS HI +YE + T
Sbjct: 626 DGPSMEQGELALGQNPLIAFMTWQGYNFEDAIIINERLIRDDVYTSIHIEEYESEARDTK 685
Query: 700 NGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLL 759
GPE T +IP+ L+NLD+ G++ +G+ VE GDILVGK+TP+ E S E+RLL
Sbjct: 686 LGPEEFTREIPNTGEDQLKNLDERGIIRIGAEVEDGDILVGKVTPKGVTELS--AEERLL 743
Query: 760 RAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPET---IHIYILQKREIKV 816
AI G + ++T LK+P GG G V DVR ++ G +P + +YI Q+R+I+V
Sbjct: 744 HAIFGEKAREVRDTSLKVPHGGGGFVQDVRIFTRENGDELSPGVNMMVRVYIAQRRKIQV 803
Query: 817 GDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGD 876
GDK+ GRHGNKG VS I+ +DMP++ DG P+D++ +P+GVPSRMN+GQ+ E LG+A
Sbjct: 804 GDKMXGRHGNKGTVSVIVPSEDMPFMPDGTPIDIMLSPMGVPSRMNIGQVLELHLGMAAR 863
Query: 877 VLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPF 936
L H FD + ++++ A ++ P GKS ++DGRTG F
Sbjct: 864 ELGIHVASPVFDGARD---------TDIWDAIQEAGLP------ADGKSILYDGRTGEAF 908
Query: 937 EQPVIIGNPYILKLIHQVDDK 957
++ V +G + +KL H VDDK
Sbjct: 909 DKRVSVGIMHYMKLAHMVDDK 929
Score = 87.8 bits (214), Expect = 6e-16
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 7/173 (4%)
Query: 105 PLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDR 164
PLM GT I+NG R++++Q+++SPG+YY ELD G Y T I G LE E D
Sbjct: 1 PLMTPTGTFIINGAERVIVSQLVRSPGVYYNEELDKNGRPNYGTTFIPSRGAWLEFETDA 60
Query: 165 KARIWARVSRKQKISILVLSSAMG-SNLNEILENVCYPEIFLSFLNDKEEKK---IGSKE 220
K + R+ R +K+ I L A+G + +EIL+ + +S DK+ K E
Sbjct: 61 KGLSYVRIDRTRKLPITELVRALGYGSDSEILQMLGDQYDSISLTLDKDVHKDIEHSRVE 120
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNL 272
A+ + Y + G+P +S L +FF +R +L +GR +N++L+L
Sbjct: 121 EALKDIYERLR--PGEPKTADSARALLTARFFDPKRYDLAPVGRYKINKKLSL 171
>pir||S26873 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Chlamydomonas
reinhardtii chloroplast
Length = 626
Score = 492 bits (1254), Expect = e-138
Identities = 250/496 (50%), Positives = 336/496 (67%), Gaps = 33/496 (6%)
Query: 590 KDTNKIVLFGSGET-----LSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAAT 644
K T +F G + + L Y RSN++TC+ K V+ G ++ G +LAD A++
Sbjct: 75 KKTQNATIFSMGTSAFKNQVKYNLETYHRSNQDTCLIHKPAVKEGDWVEVGDLLADSASS 134
Query: 645 VGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPER 704
+GGEL++G N++VAYMPWEGYN EDA+LI++RLVYEDIYTS HI +YE+ T T G E+
Sbjct: 135 IGGELAIGHNIIVAYMPWEGYNYEDAILINERLVYEDIYTSIHIERYEVTTKETKLGFEQ 194
Query: 705 ITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILG 764
IT +IP + + +++LDK G+ +GSWVE GDILVGK+TP K + P+ +LL I
Sbjct: 195 ITREIPDISENEIKHLDKTGIAKIGSWVEEGDILVGKITPFNIK--TLTPQQKLLYKIFD 252
Query: 765 IQVSTSKETCLKLPIGGRGRVIDVRWL----------HKKGGSGYNPET----------- 803
Q+ST+K++ L+ P G + VI++ L K G G P
Sbjct: 253 KQLSTTKDSSLRAPKGIKANVININILARQKIQINTKSKNTGKGSKPPRASKAQNTMVSQ 312
Query: 804 ---IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSR 860
IHIY+ +KR+++VGDK+AGRHGNKGIVS+IL RQDMP+L DG VD+V NPLGVPSR
Sbjct: 313 PSYIHIYLAEKRKMQVGDKMAGRHGNKGIVSRILPRQDMPFLPDGAAVDIVLNPLGVPSR 372
Query: 861 MNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPE 920
MNVGQI+EC LGLAG L HY+I PFDE Y +ASR V S+LY+A K+T W+ +P
Sbjct: 373 MNVGQIYECLLGLAGRYLGEHYKIPPFDEMYGADASRSFVLSKLYEARKKTGLKWLLDPN 432
Query: 921 YPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQ 980
+PGK R+FDGR F+Q V +G Y+LKL+H VDDK+H RS+G Y+LVTQQPL+GR+KQ
Sbjct: 433 HPGKIRLFDGRNSECFDQTVTVGIAYVLKLVHMVDDKMHARSTGPYSLVTQQPLRGRSKQ 492
Query: 981 GGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFR 1040
GGQR+GEMEVWA+EG+G A +L EMLT KSD + RQ + I IS + +PESF+
Sbjct: 493 GGQRLGEMEVWAIEGYGAAFVLSEMLTIKSDDMTGRQNLWKNLIENKEIS--LGSPESFK 550
Query: 1041 LLVRELRSLALELNHF 1056
+L+ EL++L L++ F
Sbjct: 551 VLICELQALCLDIGLF 566
>gi|7524891 RNA polymerase beta subunit [Chlorella vulgaris]
sp|P56299|RPOB_CHLVU DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||T07321 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Chlorella
vulgaris chloroplast
dbj|BAA57969.1| (AB001684) RNA polymerase beta subunit [Chlorella vulgaris]
Length = 1301
Score = 464 bits (1180), Expect = e-129
Identities = 241/479 (50%), Positives = 325/479 (67%), Gaps = 32/479 (6%)
Query: 603 TLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPW 662
T + L+ Y+R+N++TC ++ + + +++G +LADGA++ G+LS+G+NVLVAY+PW
Sbjct: 808 TTTYSLIQYQRTNQSTCFSERPILPENEWVEKGDLLADGASSSQGKLSIGQNVLVAYLPW 867
Query: 663 EGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIP------HLEVHL 716
EGYN EDA+LIS RLV ++I+TS H+ Y+I T G ERITN IP +++
Sbjct: 868 EGYNFEDAILISQRLVDQEIFTSLHMDHYDIAVQNTQYGLERITNLIPLKISDSTRDIYK 927
Query: 717 LRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSY-APEDRLLRAILGIQVSTSKETCL 775
+ NLD GLV +GSWVE GD LVGK++P K +P ++L IL + ++ + T L
Sbjct: 928 MGNLDSRGLVEIGSWVEPGDYLVGKMSPLDPKSPPLQSPHEKLYNVILQREKTSFRNTSL 987
Query: 776 KLPIGGRGRVIDVRWLHKKGGSGYNPET-----------IHIYILQKREIKVGDKVAGRH 824
++P G +G V+ V+ L + P+ + + +LQ+R+I+VGDK+AGRH
Sbjct: 988 RVPKGVQGFVLGVQILPSQ-----EPDVAALAEKDEILRVRVLLLQRRKIQVGDKMAGRH 1042
Query: 825 GNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRI 884
GNKGIVS IL RQDMPYL DG PVD+V NPLGVPSRMNVGQI EC LGLAG L Y
Sbjct: 1043 GNKGIVSLILPRQDMPYLPDGTPVDIVLNPLGVPSRMNVGQILECLLGLAGHFLHERYTT 1102
Query: 885 APFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGN 944
FDE+Y EASR LV+S+LYQAS +T NPW+FEP +PGK R+FDGRTG F+QP+ G
Sbjct: 1103 YLFDEQYGAEASRSLVYSKLYQASLKTRNPWVFEPHHPGKIRVFDGRTGLTFDQPITAGY 1162
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
YILKL+H VDDKIH R +G Y+ +TQQP+KGRA+ GGQR+GEMEVWAL+ +G AH L E
Sbjct: 1163 AYILKLVHLVDDKIHARPTGPYSAITQQPVKGRARNGGQRLGEMEVWALQAYGAAHTLHE 1222
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDA--PESFRLLVRELRSLALELNHFLVSEK 1061
T KSD + RQ+ ++ +KPV PESF+L++REL++L +F V EK
Sbjct: 1223 FFTVKSDDLDGRQQ----AVLNIYANKPVTTGNPESFKLILRELQALCF---NFQVYEK 1274
Score = 274 bits (694), Expect = 3e-72
Identities = 188/632 (29%), Positives = 315/632 (49%), Gaps = 45/632 (7%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
+P L +Q + F FI+ GL E K + T ++E + F E Q +P +K AV
Sbjct: 42 IPNLIDVQRQSFYSFIEYGLKEAFQKPLRFSTTKHDLEIRFFPEGIQFRKPDFTQKQAVV 101
Query: 72 ESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPG 131
Y S +Y+ G+ K S + + +F+G +P+M G +VNG+ R+V++Q++++PG
Sbjct: 102 LGKIYGSAVYIPVGIHSKKSSTFRIEWLFVGILPIMTRQGHFVVNGVSRVVLHQMVRNPG 161
Query: 132 IYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARV-SRKQKISILVLSSAMGSN 190
IY H + T I+ + GG + + +D+K R+W S ++K+S+L+ A+G
Sbjct: 162 IYTLPI--HPRTKIGTLRIVPEKGGWIHITVDKKHRVWFLTRSLRRKVSLLIFLQAVGIP 219
Query: 191 LNEILENVCYPEIFL----------SFLNDKEEKKIG------SKESAILEFYRQFACVG 234
++I + + +I S +D ++ G ++E A Y F
Sbjct: 220 FHDIFLRLEHSKILQNSFVAELGEGSARHDDVLERAGLYAHPATQEEAWQYLYSHFKEYS 279
Query: 235 GDPVFPESLCRELQ--KKFF------QQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDI 286
P ++L + Q ++FF + + LG IGR+ ++ P NT L D+
Sbjct: 280 --PYAHKNLAAKEQTAREFFYSTLWNKDKLILGHIGRQQFREKIGSIEPLENTSLTREDL 337
Query: 287 LTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRY 346
L A L+ + + +D+++ L KRIR + L + + E R +
Sbjct: 338 LEATQALLSLMHKKRVVDEIDSLTQKRIRGCDEFLLEHLATGMKEFELFFRRKVTFLPAT 397
Query: 347 KLIPTPQN----------LVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYL 396
K I +N V S ++ +++ FF L Q +D+TN L + H R+L+ L
Sbjct: 398 KSITGAENPFRSLWRQNKAVFSKTVSKSWKRFFTSGTLGQFMDQTNSLAETTHKRRLTVL 457
Query: 397 GPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWG--SIESPF 454
GPGG++G+ + +IR IH ++YGR+CPI+T EG N GL+ S + + + ++G ++ +PF
Sbjct: 458 GPGGISGKQTTIQIRGIHPTYYGRLCPIETPEGKNAGLVNSFTVLSVLSKYGARTLTTPF 517
Query: 455 FEI--SERSKRIHMLYLSPSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWE 511
+++ + K + L +SP R EY +I + L N + +P R F +
Sbjct: 518 YQVYKGQVQKTLPPLRVSP-RQEYKLIEAPADIQLTAWNVLPKTHLPVRKELNFHSDVAT 576
Query: 512 QVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQV 571
++ +S+ Q S+ SLIPF+EHNDANRALM SNMQRQAVPL + + +VGTGLE +V
Sbjct: 577 RITTQSVGILQNISVATSLIPFLEHNDANRALMGSNMQRQAVPLLKPQAPLVGTGLESRV 636
Query: 572 ALDSGTLAIAEHEGKIIYKDTNKIVLFGSGET 603
D A G I + KI + +T
Sbjct: 637 IGDVNHSMQASKTGFITKVSSTKIQVLSPRKT 668
>sp|P47715|RPOB_MYCGA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
gb|AAB40951.1| (L38402) RNA polymerase beta subunit [Mycoplasma gallisepticum]
Length = 1390
Score = 457 bits (1164), Expect = e-127
Identities = 250/635 (39%), Positives = 385/635 (60%), Gaps = 33/635 (5%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAI 344
D+++ +++ + F +G DD++HL NKR++ + +LL+ + ++R+E ++ + A
Sbjct: 493 DLISIVSYIVNLPFNIGLYDDIDHLGNKRLKLINELLKSKVQTGMMRIEKYIKDKLQTAD 552
Query: 345 RYKLIP--------------------TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPL 384
+ T ++++ P + FF H L+Q LD+ NPL
Sbjct: 553 GNNKLADQDAENDPDSDLGTKSGNDLTVKSVINPKPFQIVIKDFFNTHQLTQFLDQQNPL 612
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ + R++S +GPGG++ + IRD+H SHYGRICPI+T EG+N+GLI SLA +A I
Sbjct: 613 SELTNKRRISAMGPGGISREDPNLDIRDVHYSHYGRICPIETPEGMNIGLIMSLAFYATI 672
Query: 445 GRWGSIESPFFEISE---RSKRIHMLYLSPSRDEYYMIATGNYL-ALNQGNQEEQIVPAR 500
+ G + +P+ ++ K H+ L + DEY + +Y+ G + + AR
Sbjct: 673 DKNGFLMTPYLKVENGKITDKVEHLTAL--TEDEYIIAEASSYMDVAKDGTINNEKIIAR 730
Query: 501 YRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEK 560
YR +QV + Q S+ ASLIPF+E++D++RALM +NMQRQA PL +
Sbjct: 731 YRSSQDLYDPKQVDYIVVSPKQVVSVAASLIPFLENDDSSRALMGANMQRQATPLLKPYS 790
Query: 561 CIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFG-SGETLSVPLVIYRRSNKNTC 619
+VGTG+E ++A DSG L A++ G + Y D +KI + G ++ L+ + +SNKNTC
Sbjct: 791 PLVGTGVEYKIAQDSGMLVTAKNPGTVTYVDASKITVKGEDNKSTDYNLLKFVKSNKNTC 850
Query: 620 MHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVY 679
+Q V G I+ Q LADG + GEL+LG+NVLV + W GYN EDAV+ISDRL
Sbjct: 851 YNQSPIVAVGDKIETNQALADGPSMKNGELALGQNVLVGFTTWSGYNYEDAVIISDRLFK 910
Query: 680 EDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILV 739
+D+Y+S HI +Y I+ T NG E I IP++ R LD+ G++++G+ V+ GDILV
Sbjct: 911 DDVYSSIHIDEYTIECLRTKNGDEEIIRDIPNISESAKRYLDEEGVIMVGAEVKEGDILV 970
Query: 740 GKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGY 799
GK +P+ E PE++L++ ILG +V +E+ LK+P GG G V ++ G
Sbjct: 971 GKTSPKGQVE--LTPEEKLIQVILGDKVKQVRESSLKVPNGGDGIVAGIKRFSIANGDEL 1028
Query: 800 NP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLG 856
E + +Y++QKR+I++GDKVAGRHGNKGI+SKI+A++DMP+L+DG P+D++ NPLG
Sbjct: 1029 EDDVLELVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMPHLEDGTPLDILLNPLG 1088
Query: 857 VPSRMNVGQIFECSLGLAGDVLDRHYRI-APFDER 890
VPSRMN+GQIFE LG A L + I A FD++
Sbjct: 1089 VPSRMNIGQIFELHLGYAARELAKAKLIEACFDKK 1123
Score = 146 bits (365), Expect = 1e-33
Identities = 69/132 (52%), Positives = 94/132 (70%), Gaps = 1/132 (0%)
Query: 923 GKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGG 982
GK ++ DGRTG PFE+P+ +G Y+LKL H VDDKIH R+ G Y+ +TQQPL G+++ GG
Sbjct: 1217 GKFKLIDGRTGEPFEKPISVGIMYMLKLDHMVDDKIHARAVGPYSKITQQPLGGKSQNGG 1276
Query: 983 QRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLL 1042
QR GEMEVWAL+ +G AH L+E+LT KSD ++ R + G +I +P PESF+LL
Sbjct: 1277 QRFGEMEVWALQAYGAAHNLREILTIKSDDVRGRNMTYNAIVKGLSIPEP-GVPESFKLL 1335
Query: 1043 VRELRSLALELN 1054
+EL+ L + LN
Sbjct: 1336 TKELQGLGMTLN 1347
Score = 62.5 bits (149), Expect = 3e-08
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVY 71
LPG IQ + +F+++ L E + + I+ + + + ++++P I +++A
Sbjct: 33 LPG---IQVNAYKQFLEKELEEIIGSYFPIKSPNGKYSVEF--HGMKILDPQITKEEASA 87
Query: 72 ESLTYSSELYVSAGL----------IWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRI 121
ES TY + LYV+ L I K S + + I+ +IPLM G IVNGI +
Sbjct: 88 ESKTYDASLYVNLSLVNHQTGTVKKISKKSAKSKAEGIYFADIPLMTENGAFIVNGIEKF 147
Query: 122 VINQILQSPGIY 133
V+ QI++SPG Y
Sbjct: 148 VVAQIVRSPGAY 159
>gb|AAF87049.1|AF171070_1 (AF171070) RNA polymerase beta subunit [Bartonella henselae]
Length = 1383
Score = 445 bits (1132), Expect = e-123
Identities = 240/594 (40%), Positives = 365/594 (61%), Gaps = 18/594 (3%)
Query: 210 DKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNR 268
DK E S++ A+ + YR G+P ++ FF +R +L +GR MN
Sbjct: 368 DKNE----SRQDALFDIYRVMR--PGEPPTMDTAEAMFHSLFFDPERYDLSAVGRVKMNL 421
Query: 269 RLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLA 328
R++LD P L DIL L+ ++ G +DD+++L N+R+RSV +L+++Q+ +
Sbjct: 422 RMDLDCPDTVRVLRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRIG 481
Query: 329 LVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIV 388
L+R+E ++ + ++ + PQ+L+ + P FFG LSQ +D+TNPL++I
Sbjct: 482 LLRMERAIKERM-SSVEIDTV-MPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEIT 539
Query: 389 HGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWG 448
H R+LS LGPGGLT A F +RD+H +HYGRICPI+T EG N+GLI SLA AR+ ++G
Sbjct: 540 HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG 599
Query: 449 SIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTI 508
IESP+ +I + ++YLS + + +A N +G E+ V R+ E L
Sbjct: 600 FIESPYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAEGRLSEEFVVCRHAGEVLMA 659
Query: 509 AWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLE 568
+ V L + Q S+ A+LIPF+E++DANRALM SNMQRQAVPL ++E VGTG+E
Sbjct: 660 PRDHVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGME 719
Query: 569 RQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSG--ETLSVPLVIYR-----RSNKNTCMH 621
VA DSG A G + D +IV+ + + + IYR RSN++TC++
Sbjct: 720 SIVARDSGAAVAARRSGIVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQSTCIN 779
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYED 681
Q+ V G +++G I+ADG +T G+L+LG+NVLVA+MPW GYN ED++L+S+R+V +D
Sbjct: 780 QRPLVHVGDRVEKGNIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADD 839
Query: 682 IYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGK 741
++TS HI ++E+ T GPE IT IP++ LRNLD+ G++ +G+ V+ GDILVGK
Sbjct: 840 VFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIIYIGAEVQPGDILVGK 899
Query: 742 LTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
+TP+ ES PE++LLRAI G + S ++T +++P G G V++VR ++ G
Sbjct: 900 ITPK--GESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHG 951
Score = 229 bits (577), Expect = 2e-58
Identities = 131/289 (45%), Positives = 177/289 (60%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +++ KR+I+ GDK+AGRHGNKG+VS+IL +DMP+L+DG D+V NPLGVPSRMNV
Sbjct: 1076 VKVFVAVKRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHADIVLNPLGVPSRMNV 1135
Query: 864 GQIFECSLGLA------------------GDVLDRHYRIA---PFDE------RYEQEAS 896
GQI E LG A GD+L RI P D+ +Y+ E+
Sbjct: 1136 GQILETHLGWACAGMGKKIGDLVDLYQETGDILPLRQRIENLMPDDDHNEPVRQYDNESL 1195
Query: 897 RKL---------VFSELYQASKQTSNPWIFEP---EYPGKSRIFDGRTGTPFEQPVIIGN 944
KL + + ++ + + + E + G+ ++DGRTG PF++PV +G
Sbjct: 1196 YKLALQMRKGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGY 1255
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDKIH RS G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE
Sbjct: 1256 IYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1315
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R +V I+ G + PESF +LV+E+RSLAL +
Sbjct: 1316 MLTVKSDDVAGRTKVY-EAIVRGDDTFEAGIPESFNVLVKEMRSLALNV 1363
Score = 83.9 bits (204), Expect = 9e-15
Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 12/151 (7%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIW---------KNSKNIQEQTIFIGNIPLM 107
YQ P ++ LTY++ L V LI K+ K+I+EQ +++G++PLM
Sbjct: 83 YQFDSPKFDVEECRQRDLTYAAPLKVILRLIVFDVDEDTGSKDIKDIKEQGVYMGDMPLM 142
Query: 108 NSLGTSIVNGIYRIVINQILQSPGIYY---QSELDHKGISVYTGTIISDWGGRLELEIDR 164
+ GT IVNG R++++Q+ +SPG+++ + + G ++ +I G L++E D
Sbjct: 143 TTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKFLFAARVIPYRGSWLDIEFDA 202
Query: 165 KARIWARVSRKQKISILVLSSAMGSNLNEIL 195
K I+AR+ R++KI + L A+G + ++IL
Sbjct: 203 KDIIYARIDRRRKIPVTSLLMALGMDASDIL 233
>sp|P78013|RPOB_MYCPN DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||S73652 RNA polymerase beta chain rpoB - Mycoplasma pneumoniae (strain ATCC
29342)
gb|AAB95974.1| (AE000030) RNA polymerase beta subunit [Mycoplasma pneumoniae]
Length = 1391
Score = 445 bits (1132), Expect = e-123
Identities = 251/640 (39%), Positives = 392/640 (61%), Gaps = 28/640 (4%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTIC--- 341
D + + ++I + +G DD++HL NKR++ + +L+ + + R+E ++ +
Sbjct: 503 DFIASISYVINIPSAIGKYDDIDHLGNKRVKLINELISSRLESGITRMERFLKEKLTIAD 562
Query: 342 GAIRYKLIP--------------TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQI 387
G R + I T ++L+ S P+ FF H L+Q LD NPL+++
Sbjct: 563 GVNRGQQINEEGQVIEQAEKKELTIKSLINSKPIQIVIRDFFNTHQLTQFLDHQNPLSEL 622
Query: 388 VHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRW 447
+ R++S +GPGG++ + IRD+H S YGRICPI+T EG+N+GLI SLA A+I
Sbjct: 623 SNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIETPEGMNIGLIMSLASFAKIDEN 682
Query: 448 GSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLA-LNQGNQ--EEQIVPARYRQE 504
G + +P+ +I + YL+ R++ ++IA + L +++ N+ +++I+ RYR
Sbjct: 683 GFLMAPYRKIKNGVITDEVEYLTALREDEHIIAEISSLVNIDENNKILDKEII-GRYRSM 741
Query: 505 FLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVG 564
++ + Q SIG+SLIPF+E++D+ RALM +NMQRQA PL + +VG
Sbjct: 742 QGLYDPSKIDYIDVAPHQVVSIGSSLIPFLENDDSARALMGTNMQRQAYPLIKPYAPVVG 801
Query: 565 TGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFG-SGETLSVPLVIYRRSNKNTCMHQK 623
TG E ++A DSG +A G + Y D +KI + SGE ++ L+ + RSN+NTC +
Sbjct: 802 TGQEYKIARDSGLTMLAPCSGTVKYVDNSKITIESDSGEQHTLDLIKFERSNQNTCYNHV 861
Query: 624 SQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIY 683
V++G+ + + +++ADG A ELSLG+NVLVA+ W GYN EDA++IS+RLV +D+
Sbjct: 862 PLVEKGQRVTKDEVIADGPAVNKSELSLGQNVLVAFTTWNGYNYEDAIVISERLVKDDVL 921
Query: 684 TSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLT 743
TS I +Y Q T NG E+IT IP++ R LD+NG++++G+ V+ GD+LVGK++
Sbjct: 922 TSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDENGIIMVGAEVKEGDVLVGKVS 981
Query: 744 PQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNP-- 801
P+ E S PE++L +AI V +++ LKLP GG G V V+ G+ N
Sbjct: 982 PKGQVEVS--PEEKLFKAIFPESVQNVRDSSLKLPHGGDGIVSCVKRFSIANGNELNDGV 1039
Query: 802 -ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSR 860
E I +Y++QKR+I++GDK+AGRHGNKG++SK++ DMP+L+DG PVD++ NPLGVPSR
Sbjct: 1040 IEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADMPHLEDGTPVDILLNPLGVPSR 1099
Query: 861 MNVGQIFECSLGLAGDVLDRHYRI-APFDERYEQEASRKL 899
MN+GQIFE LG A L + I A FD++ Q S ++
Sbjct: 1100 MNIGQIFEMHLGYAAHNLAKRMLISACFDDKKAQALSTEI 1139
Score = 147 bits (367), Expect = 7e-34
Identities = 70/135 (51%), Positives = 95/135 (69%), Gaps = 1/135 (0%)
Query: 920 EYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAK 979
E GK ++ DGRTG PFE+P+ +G YI+KL H VDDKIH R+ G Y+ +TQQPL G+++
Sbjct: 1221 ETHGKFKLIDGRTGLPFEKPISLGIMYIMKLNHMVDDKIHARAVGPYSKITQQPLGGKSQ 1280
Query: 980 QGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESF 1039
GGQR GEMEVWALE +G A+ LQE+LT KSD ++ R + + G +P PESF
Sbjct: 1281 NGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNKAYAAIVKGAAFPEP-GIPESF 1339
Query: 1040 RLLVRELRSLALELN 1054
+LL +EL+ LAL ++
Sbjct: 1340 KLLTKELQGLALSVS 1354
Score = 52.7 bits (124), Expect = 2e-05
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 13 PGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYE 72
P L IQ + F+D L + + I+ + + + + + P E + E
Sbjct: 31 PNLADIQIRSYQTFLDHDLENLIAAYFPIKSPNDR--YTINFKGLRRTAPERNEAQSRSE 88
Query: 73 SLTYSSELYVSAGLI-------------WKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIY 119
S TY +Y LI KNS +F+ N+PL+ G IVNGI
Sbjct: 89 SKTYEIGIYADLELIDSATGTIKKPRKSKKNSATSSVDGVFLTNLPLITRDGVFIVNGIE 148
Query: 120 RIVINQILQSPGIY 133
+ VI QI +SPGIY
Sbjct: 149 KFVIAQITRSPGIY 162
>gb|AAF80850.1|AF165994_1 (AF165994) RNA polymerase beta subunit [Bartonella quintana]
Length = 1383
Score = 443 bits (1128), Expect = e-123
Identities = 239/594 (40%), Positives = 366/594 (61%), Gaps = 18/594 (3%)
Query: 210 DKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNR 268
DK E S++ A+ + YR G+P ++ FF +R +L +GR MN
Sbjct: 368 DKNE----SQQDALFDIYRVMR--PGEPPTMDTAAAMFHSLFFDPERYDLSAVGRVKMNL 421
Query: 269 RLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLA 328
R++LD P L DIL L+ ++ G +DD+++L N+R+RSV +L+++Q+ +
Sbjct: 422 RMDLDCPDTVRILRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRIG 481
Query: 329 LVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIV 388
L+R+E ++ + ++ + PQ+L+ + P FFG LSQ +D+TNPL++I
Sbjct: 482 LLRMERAIKERM-SSVEIDTV-MPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEIT 539
Query: 389 HGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWG 448
H R+LS LGPGGLT A F +RD+H +HYGRICPI+T EG N+GLI SLA AR+ ++G
Sbjct: 540 HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG 599
Query: 449 SIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTI 508
IESP+ +I + ++YLS + + +A N +G ++ V R+ E L
Sbjct: 600 FIESPYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAEGRFTDEFVVCRHAGEVLMA 659
Query: 509 AWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLE 568
+ V L + Q S+ A+LIPF+E++DANRALM SNMQRQAVPL ++E VGTG+E
Sbjct: 660 PRDHVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGME 719
Query: 569 RQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSG--ETLSVPLVIYR-----RSNKNTCMH 621
VA DSG A+ G + D +IV+ + + + IYR RSN++TC++
Sbjct: 720 SIVARDSGAAVSAKRGGIVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQSTCIN 779
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYED 681
Q+ V G +++G I+ADG +T G+L+LG+NVLVA+MPW GYN ED++L+S+R+V +D
Sbjct: 780 QRPLVHVGDRVEKGNIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADD 839
Query: 682 IYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGK 741
++TS HI ++E+ T GPE IT IP++ LRNLD+ G++ +G+ V+ GDILVGK
Sbjct: 840 VFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEESLRNLDEAGIIYIGAEVQPGDILVGK 899
Query: 742 LTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
+TP+ ES PE++LLRAI G + S ++T +++P G G V++VR ++ G
Sbjct: 900 ITPK--GESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHG 951
Score = 227 bits (572), Expect = 7e-58
Identities = 130/289 (44%), Positives = 177/289 (60%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +++ KR+I+ GDK+AGRHGNKG+VS+IL +DMP+L+DG D+V NPLGVPSRMNV
Sbjct: 1076 VKVFVAVKRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHADIVLNPLGVPSRMNV 1135
Query: 864 GQIFECSLGLA--------GDVLDRHYR---IAPFDER----------------YEQEAS 896
GQI E LG A GD++D + I P +R Y+ E+
Sbjct: 1136 GQILETHLGWACAGMGKKIGDLVDLYQETGDIFPLRQRIENLMPDNDHNEPVRQYDNESL 1195
Query: 897 RKL---------VFSELYQASKQTSNPWIFEP---EYPGKSRIFDGRTGTPFEQPVIIGN 944
KL + + ++ + + + E + G+ ++DGRTG PF++PV +G
Sbjct: 1196 YKLALQMRKGVSIATPVFDGAHEADINMMLEDADLDSSGQVVLYDGRTGEPFDRPVTVGY 1255
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDKIH RS G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE
Sbjct: 1256 IYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1315
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R +V I+ G + PESF +LV+E+RSLAL +
Sbjct: 1316 MLTVKSDDVAGRTKVY-EAIVRGDDTFEAGIPESFNVLVKEMRSLALNV 1363
Score = 83.5 bits (203), Expect = 1e-14
Identities = 48/151 (31%), Positives = 87/151 (56%), Gaps = 12/151 (7%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIW---------KNSKNIQEQTIFIGNIPLM 107
Y+ P ++ LTY++ L V LI K+ K+I+EQ +++G++PLM
Sbjct: 83 YEFDLPKFDVEECRQRDLTYAAPLKVILRLIVFDVDEDTGSKDIKDIKEQGVYMGDMPLM 142
Query: 108 NSLGTSIVNGIYRIVINQILQSPGIYY---QSELDHKGISVYTGTIISDWGGRLELEIDR 164
+ GT IVNG R++++Q+ +SPG+++ + + G ++ +I + G L++E D
Sbjct: 143 TTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKFLFAARVIPNRGSWLDIEFDA 202
Query: 165 KARIWARVSRKQKISILVLSSAMGSNLNEIL 195
K I+AR+ R++KI I L A+G + ++IL
Sbjct: 203 KDIIYARIDRRRKIPITSLLMALGMDASDIL 233
>gb|AAG48562.1|AF236795_1 (AF236795) RNA polymerase beta subunit [Rickettsia pulicis]
Length = 1289
Score = 442 bits (1124), Expect = e-122
Identities = 243/587 (41%), Positives = 364/587 (61%), Gaps = 17/587 (2%)
Query: 219 KESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQN 277
+E+A+ + +R G+P E+ FF +R +L E+GR MN RL L+I +
Sbjct: 376 REAALCDIFRVLR--PGEPANIEAAENLFYNLFFDAERYDLSEVGRIKMNSRLELNISEE 433
Query: 278 NTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE-NMV 336
T L DI L+ +K G +DD++HL N+R+RSV +L+++QF + LVR+E +++
Sbjct: 434 VTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVI 493
Query: 337 RGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYL 396
G + + P +LV S L + + FF LSQ +D+TNPL++I H R+LS L
Sbjct: 494 ERMSAGDVDTVM---PHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSAL 550
Query: 397 GPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFE 456
GPGGL+ A F +RD+H +HYGRICPI+T EG N+GLI S+A +ARI + G IESP+
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRR 610
Query: 457 ISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQ-EFLTIAWEQVHL 515
+ +R ++YLS + Y I N G + + + R F+ + ++V
Sbjct: 611 VKDRHVTDEVVYLSAIEEGKYKIGQANSKVDKDGKLQGEFINCRVEGGNFVMVEPQEVDF 670
Query: 516 RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDS 575
+ Q S+ ASLIPF+E++DANRALM SNMQRQAVPL +++ VGTG+E VA DS
Sbjct: 671 IDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDS 730
Query: 576 GTLAIAEHEGKIIYKDTNKIVLF-------GSGETLSVPLVIYRRSNKNTCMHQKSQVQR 628
G +A H+G + D+N+IV+ GS L+ +++SN NTC++QK V+
Sbjct: 731 GASVLALHDGIVEQVDSNRIVIRTLEQKIDGSPSVDIYNLLKFQKSNHNTCINQKPLVKV 790
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
G +K+ I+ADG +T GE++LG+NVLVA++PW GYN ED++LIS+R+V ED++TS HI
Sbjct: 791 GHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHI 850
Query: 689 RKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAK 748
++E+ T GPE IT IP++ LR+LD+ G++ +G+ V+AGDILVGK+TP+
Sbjct: 851 EEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPK--S 908
Query: 749 ESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
ES PE++LLRAI G + K++ L +P G G V++VR ++G
Sbjct: 909 ESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRG 955
Score = 133 bits (331), Expect = 1e-29
Identities = 79/212 (37%), Positives = 117/212 (54%), Gaps = 40/212 (18%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + ++I K +++ GDK+AGRHGNKG++S+I+ +DMP+L+DG VD+V NPLG+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 862 NVGQIFECSLG------------LAGDVLDRHYRIAPFDE----------RYEQEASRKL 899
N+GQI E LG L + ++H I + Y E S +
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLLELYGENINYILERSEEE 1197
Query: 900 VFSELYQASK--QTSNPWIFE---------------PEYPGKSRIFDGRTGTPFEQPVII 942
+ S + SK + P +F+ + G+ ++ DGRTG F++ V +
Sbjct: 1198 IISFCNKVSKGVHFATP-VFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTV 1256
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPL 974
G Y+LKL H VD+KIH RS G Y+LVT QPL
Sbjct: 1257 GQKYLLKLHHLVDNKIHSRSIGPYSLVTLQPL 1288
Score = 85.4 bits (208), Expect = 3e-15
Identities = 56/181 (30%), Positives = 98/181 (53%), Gaps = 14/181 (7%)
Query: 28 DRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGL- 86
++GL L I D+ + FV+ Y+ P ++ SL+Y++ L V+ L
Sbjct: 59 NKGLQSILNSIFPISDSSNIANLE-FVK-YEFDTPKYDVEECSQRSLSYAAPLKVTLRLS 116
Query: 87 IW--------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY---Q 135
IW + K I+EQ +++G+IPLM GT I+NG R+V++Q+ +SPG+++ +
Sbjct: 117 IWDIDEDTGSREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDE 176
Query: 136 SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ G +Y+ +I G L+LE D K I+ R+ RK+K+ L A+G + EI+
Sbjct: 177 GKVHSSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMSTEEII 236
Query: 196 E 196
+
Sbjct: 237 K 237
>gb|AAC69338.1| (AF087812) RNA polymerase B-subunit [Legionella pneumophila]
Length = 1368
Score = 439 bits (1118), Expect = e-122
Identities = 270/705 (38%), Positives = 404/705 (57%), Gaps = 42/705 (5%)
Query: 217 GSKESAILEFYRQFACVGGDPVFPESLCRELQKKFF-QQRCELGEIGRRNMNRRLNLDIP 275
GS+ A++E YR G+P E+ + FF ++R +L +GR NRR+ +
Sbjct: 372 GSQLEALVEIYRMMR--PGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGIKSD 429
Query: 276 QNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENM 335
+ L DIL+ LI ++ +G +DD++HL N+R+RSV ++ ++QF + LVR+E
Sbjct: 430 EGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVERA 489
Query: 336 VRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSY 395
V+ + L+P Q+L+ + P++ + FFG LSQ +D+ NPL+ + H R++S
Sbjct: 490 VKERLSLVESENLMP--QDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTHKRRVSA 547
Query: 396 LGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFF 455
LGPGGLT A F +RD+H++HYGR+CPI+T EG N+GLI SL+++AR +G IE+P
Sbjct: 548 LGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFIETPCR 607
Query: 456 EISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHL 515
++ + YLS + IA N QGN +VP R++ EF ++++
Sbjct: 608 KVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLTTPDKINY 667
Query: 516 RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDS 575
+ Q S+ ASLIPF+EH+DANRALM SNMQRQAVP +SEK +VGTG+ER VA DS
Sbjct: 668 MDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMERIVASDS 727
Query: 576 GTLAIAEHEGKIIYKDTNKIVL-FGSGETLS-------VPLVIYRRSNKNTCMHQKSQVQ 627
G +A+ G I D ++IV+ ET + L Y RSN++TC++Q+ V
Sbjct: 728 GVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCINQRPIVS 787
Query: 628 RGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFH 687
G I+RG +LADG T GEL+LG+N+LVA+MPW GYN ED++LIS+R+V++D +T+ H
Sbjct: 788 TGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDDRFTTIH 847
Query: 688 IRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMA 747
I + T G E IT IP++ L NLD++G+V +G+ V+AGDILVGK+TP+
Sbjct: 848 IEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVGKVTPK-- 905
Query: 748 KESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIY 807
E+ PE++LLRAI G + S K++ L++P G G VIDV+ + G
Sbjct: 906 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDG------------ 953
Query: 808 ILQK--REIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQ 865
L+K R + ++ R I + + +D+ + +D V G P + G
Sbjct: 954 -LEKDARAKSIEEEHLARVRKDLIDERRIREEDIYHRVSHLLLDKV--ATGGPGSLKPGS 1010
Query: 866 IFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQ 910
+ D LD+ R FD R E +A V +L Q SKQ
Sbjct: 1011 ------KITQDYLDKVEREKWFDIRIEDDA----VSQQLEQLSKQ 1045
Score = 218 bits (549), Expect = 3e-55
Identities = 124/290 (42%), Positives = 171/290 (58%), Gaps = 44/290 (15%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++S ++ +DMP+++DG VD+V NPLGVPSRMN+
Sbjct: 1078 VKVYLAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNI 1137
Query: 864 GQIFECSLGLAGDVLDRHYRIAPF-DERYEQEASRKLVFSELYQ---------------- 906
GQ+ E LGLA L R +IA DER EA K ++Y
Sbjct: 1138 GQVLETHLGLAAKGLGR--KIAQMLDERQTPEAI-KAYLEKIYNHDGVQRVNLKCLNDDE 1194
Query: 907 ---------------------ASKQTSNPWIFEPEYP--GKSRIFDGRTGTPFEQPVIIG 943
A++Q + + P GK+ + DGRTG F+ PV +G
Sbjct: 1195 LMTLADNLRAGVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVG 1254
Query: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQ 1003
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQ
Sbjct: 1255 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1314
Query: 1004 EMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
EMLT KSD + R ++ I+ G PESF +L++E+R+L +++
Sbjct: 1315 EMLTVKSDDVGGRTKIY-KNIVDGDHRMDPGMPESFNVLLKEIRALGIDI 1363
Score = 89.7 bits (219), Expect = 2e-16
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 12/151 (7%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIW---------KNSKNIQEQTIFIGNIPLM 107
Y+L EP+ ++ LTYS+ L V L+ K K+I+EQ +F+G IPLM
Sbjct: 84 YKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDASDDPKPIKDIREQDVFMGEIPLM 143
Query: 108 NSLGTSIVNGIYRIVINQILQSPGIYYQ---SELDHKGISVYTGTIISDWGGRLELEIDR 164
+GT +VNG R+V++Q+ +SPG+ ++ + G +Y+ II G L+ E D
Sbjct: 144 TDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYSARIIPYRGSWLDFEFDP 203
Query: 165 KARIWARVSRKQKISILVLSSAMGSNLNEIL 195
K ++ R+ R++K+ + +L A+G +IL
Sbjct: 204 KDCVYVRIDRRRKLPVTILLRALGYEAEDIL 234
>gb|AAF22439.1|AF076437_1 (AF076437) RNA polymerase beta subunit; RpoB [Rickettsia
prowazekii]
Length = 1374
Score = 439 bits (1117), Expect = e-122
Identities = 250/630 (39%), Positives = 377/630 (59%), Gaps = 33/630 (5%)
Query: 176 QKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGG 235
+ +++LV++ GS + L DK + +E+A+ + +R G
Sbjct: 349 KNVNVLVINPQSGSYIRNTL------------FADKNQ----DREAALCDIFRVLR--PG 390
Query: 236 DPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLI 294
+P E+ FF +R +L E+GR MN RL L+I + T L DI L+
Sbjct: 391 EPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEVTVLTIDDIKNIVRILV 450
Query: 295 GMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE-NMVRGTICGAIRYKLIPTPQ 353
+K G +DD++HL N+R+RSV +L+++QF + LVR+E +++ G + + P
Sbjct: 451 ELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSAGDVDTVM---PH 507
Query: 354 NLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDI 413
+LV S L + + FF LSQ +D+TNPL++I H R+LS LGPGGL+ A F +RD+
Sbjct: 508 DLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRDRAGFEVRDV 567
Query: 414 HSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSR 473
H +HYGRICPI+T EG N+GLI S+A +ARI + G IESP+ + ++YLS
Sbjct: 568 HPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKNGYVTDEVVYLSAIE 627
Query: 474 DEYYMIATGNYLALNQGNQEEQIVPARYRQ-EFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
+ Y I N G + + + R F+ + ++V + Q S+ ASLIP
Sbjct: 628 EGKYKIGQANSKVDQDGKLQGEFINCRVEGGNFVMVEPDEVDFIDVTPMQVVSVAASLIP 687
Query: 533 FIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDT 592
F+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG +A H+G + D+
Sbjct: 688 FLENDDANRALMGSNMQRQAVPLIKTEAPFVGTGVEGVVAKDSGASVLALHDGIVERVDS 747
Query: 593 NKIVLF-------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATV 645
N+IV+ GS L+ +++SN NTC++QK V+ G +K+ I+ADG +T
Sbjct: 748 NRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHYVKKNDIIADGPSTD 807
Query: 646 GGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERI 705
GE++LG+NVLVA++PW GYN ED++LIS+R+V ED++TS HI ++E+ T GPE I
Sbjct: 808 NGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEFEVIARDTRLGPEEI 867
Query: 706 TNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGI 765
T IP++ LR+LD+ G++ +G+ V+AGDILVGK+TP+ ES PE++LLRAI G
Sbjct: 868 TRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPK--SESPITPEEKLLRAIFGE 925
Query: 766 QVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
+ K++ L +P G G V++VR ++G
Sbjct: 926 KAFDVKDSSLHVPSGVSGTVVEVRIFSRRG 955
Score = 204 bits (514), Expect = 4e-51
Identities = 117/291 (40%), Positives = 168/291 (57%), Gaps = 41/291 (14%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + ++I K +++ GDK+AGRHGNKG++S+I+ +DMP+L+DG VD+V NPLG+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 862 NVGQIFECSLGLAG------------DVLDRHYRIAPF----------DERYEQEASRKL 899
N+GQI E LG A + D H I D Y E S +
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKDNHIDIEEIKKFLLELYGKDINYILEGSEEE 1197
Query: 900 VFSELYQASKQT--SNPWIFE---------------PEYPGKSRIFDGRTGTPFEQPVII 942
+ S + SK + P +F+ + G+ ++ DGRTG F++ V +
Sbjct: 1198 IISFCNKVSKGVYFATP-VFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTV 1256
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G+ Y+LKL H VD+KIH RS G Y+LVTQQPL G++ GGQR GEME WAL+ +G A+ L
Sbjct: 1257 GHKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTL 1316
Query: 1003 QEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
QEMLT KSD + R + +I+ G + PESF ++++E RSL L +
Sbjct: 1317 QEMLTVKSDDVNGRIKTY-DSIVRGENNFESGIPESFNVMIKEFRSLCLNV 1366
Score = 83.9 bits (204), Expect = 9e-15
Identities = 57/196 (29%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 28 DRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGL- 86
++GL L I D+ + FV+ Y+ P ++ SL+Y++ L V+ L
Sbjct: 59 NKGLQSILNSIFPISDSSNIANLE-FVK-YEFDTPKYDVEECSQRSLSYAAPLKVTLRLS 116
Query: 87 IW--------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY---Q 135
IW + K I+EQ +++G+IPLM GT I+NG R+V++Q+ +SPG+++ +
Sbjct: 117 IWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDE 176
Query: 136 SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ G +Y+ +I G L+ E D K I+ R+ R++K+ L A+G + EI+
Sbjct: 177 GKVHSSGKLLYSARVIPYIGSWLDFEFDAKDIIYFRIDRRRKLYATTLLRAIGMSTEEII 236
Query: 196 ENVCYPEIFLSFLNDK 211
+ Y + F+ +K
Sbjct: 237 K-FYYNSVTYKFVKNK 251
>sp|O52271|RPOB_RICPR DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||A71724 dna-directed RNA polymerase beta chain (rpoB) RP140 - Rickettsia
prowazekii
gb|AAC38354.1| (AF034531) RNA polymerase beta subunit [Rickettsia prowazekii]
emb|CAA14608.1| (AJ235270) DNA-DIRECTED RNA POLYMERASE BETA CHAIN (rpoB)
[Rickettsia prowazekii]
Length = 1374
Score = 439 bits (1117), Expect = e-122
Identities = 250/630 (39%), Positives = 377/630 (59%), Gaps = 33/630 (5%)
Query: 176 QKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGG 235
+ +++LV++ GS + L DK + +E+A+ + +R G
Sbjct: 349 KNVNVLVINPQSGSYIRNTL------------FADKNQ----DREAALCDIFRVLR--PG 390
Query: 236 DPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLI 294
+P E+ FF +R +L E+GR MN RL L+I + T L DI L+
Sbjct: 391 EPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEVTVLTIDDIKNIVRILV 450
Query: 295 GMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE-NMVRGTICGAIRYKLIPTPQ 353
+K G +DD++HL N+R+RSV +L+++QF + LVR+E +++ G + + P
Sbjct: 451 ELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSAGDVDTVM---PH 507
Query: 354 NLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDI 413
+LV S L + + FF LSQ +D+TNPL++I H R+LS LGPGGL+ A F +RD+
Sbjct: 508 DLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRDRAGFEVRDV 567
Query: 414 HSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSR 473
H +HYGRICPI+T EG N+GLI S+A +ARI + G IESP+ + ++YLS
Sbjct: 568 HPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKNGYVTDEVVYLSAIE 627
Query: 474 DEYYMIATGNYLALNQGNQEEQIVPARYRQ-EFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
+ Y I N G + + + R F+ + ++V + Q S+ ASLIP
Sbjct: 628 EGKYKIGQANSKVDQDGKLQGEFINCRVEGGNFVMVEPDEVDFIDVTPMQVVSVAASLIP 687
Query: 533 FIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDT 592
F+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG +A H+G + D+
Sbjct: 688 FLENDDANRALMGSNMQRQAVPLIKTEAPFVGTGVEGVVAKDSGASVLALHDGIVERVDS 747
Query: 593 NKIVLF-------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATV 645
N+IV+ GS L+ +++SN NTC++QK V+ G +K+ I+ADG +T
Sbjct: 748 NRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHYVKKNDIIADGPSTD 807
Query: 646 GGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERI 705
GE++LG+NVLVA++PW GYN ED++LIS+R+V ED++TS HI ++E+ T GPE I
Sbjct: 808 NGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEFEVIARDTRLGPEEI 867
Query: 706 TNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGI 765
T IP++ LR+LD+ G++ +G+ V+AGDILVGK+TP+ ES PE++LLRAI G
Sbjct: 868 TRDIPNVSEEALRHLDEVGIIYVGAEVKAGDILVGKVTPK--SESPITPEEKLLRAIFGE 925
Query: 766 QVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
+ K++ L +P G G V++VR ++G
Sbjct: 926 KAFDVKDSSLHVPSGVSGTVVEVRIFSRRG 955
Score = 204 bits (514), Expect = 4e-51
Identities = 117/291 (40%), Positives = 168/291 (57%), Gaps = 41/291 (14%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + ++I K +++ GDK+AGRHGNKG++S+I+ +DMP+L+DG VD+V NPLG+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 862 NVGQIFECSLGLAG------------DVLDRHYRIAPF----------DERYEQEASRKL 899
N+GQI E LG A + D H I D Y E S +
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKDNHIDIEEIKKFLLELYGKDINYILEGSEEE 1197
Query: 900 VFSELYQASKQT--SNPWIFE---------------PEYPGKSRIFDGRTGTPFEQPVII 942
+ S + SK + P +F+ + G+ ++ DGRTG F++ V +
Sbjct: 1198 IISFCNKVSKGVYFATP-VFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTV 1256
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G+ Y+LKL H VD+KIH RS G Y+LVTQQPL G++ GGQR GEME WAL+ +G A+ L
Sbjct: 1257 GHKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTL 1316
Query: 1003 QEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
QEMLT KSD + R + +I+ G + PESF ++++E RSL L +
Sbjct: 1317 QEMLTVKSDDVNGRIKTY-DSIVRGENNFESGIPESFNVMIKEFRSLCLNV 1366
Score = 84.3 bits (205), Expect = 7e-15
Identities = 58/196 (29%), Positives = 102/196 (51%), Gaps = 15/196 (7%)
Query: 28 DRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGL- 86
++GL L I D+ + FV+ Y+ P + SL+Y++ L V+ L
Sbjct: 59 NKGLQSILNSIFPISDSSNIANLE-FVK-YEFDTPKYDVDECSQRSLSYAAPLKVTLRLS 116
Query: 87 IW--------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY---Q 135
IW + K I+EQ +++G+IPLM GT I+NG R+V++Q+ +SPG+++ +
Sbjct: 117 IWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDE 176
Query: 136 SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ G +Y+ +I G L+ E D K I+ R+ RK+K+ L A+G + EI+
Sbjct: 177 GKVHSSGKLLYSARVIPYRGSWLDFEFDAKDIIYFRIDRKRKLYATTLLRAIGMSTEEII 236
Query: 196 ENVCYPEIFLSFLNDK 211
+ Y + F+ +K
Sbjct: 237 K-FYYNSVTYKFVKNK 251
>gb|AAF22433.1|AF076434_1 (AF076434) RNA polymerase beta subunit; RpoB [Rickettsia conorii]
Length = 1373
Score = 437 bits (1113), Expect = e-121
Identities = 242/587 (41%), Positives = 362/587 (61%), Gaps = 17/587 (2%)
Query: 219 KESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQN 277
+E+A+ + +R G+P E+ FF +R +L E+GR MN RL L+I +
Sbjct: 376 REAALCDIFRVLR--PGEPANIEAAESLFYNLFFDTERYDLSEVGRIKMNSRLELNISEE 433
Query: 278 NTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE-NMV 336
T L DI L+ +K G +DD++HL N+R+RSV +L+++QF + LVR+E +++
Sbjct: 434 VTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVI 493
Query: 337 RGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYL 396
G + + P +LV S L + + FF LSQ +D+TNPL++I H R+LS L
Sbjct: 494 ERMSAGDVDTVM---PHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSAL 550
Query: 397 GPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFE 456
GPGGL+ A F +RD+H +HYGRICPI+T EG N+GLI S+A +ARI + G IESP+
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRR 610
Query: 457 ISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQ-EFLTIAWEQVHL 515
+ + ++YLS + Y I N G + + + R F+ + +V
Sbjct: 611 VKDGCVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNFVMVEPYEVDF 670
Query: 516 RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDS 575
+ Q S+ ASLIPF+E++DANRALM SNMQRQAVPL +++ VGTG+E VA DS
Sbjct: 671 IDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDS 730
Query: 576 GTLAIAEHEGKIIYKDTNKIVLF-------GSGETLSVPLVIYRRSNKNTCMHQKSQVQR 628
G +A H+G + D+N+IV+ GS L+ +++SN NTC++QK V+
Sbjct: 731 GASVLALHDGIVEQVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKV 790
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
G +K+ I+ADG +T GE++LG+NVLVA++PW GYN ED++LIS+R+V ED++TS HI
Sbjct: 791 GHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHI 850
Query: 689 RKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAK 748
++E+ T GPE IT IP++ LR+LD+ G++ +G+ V+AGDILVGK+TP+
Sbjct: 851 EEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPK--S 908
Query: 749 ESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
ES PE++LLRAI G + K++ L +P G G V++VR ++G
Sbjct: 909 ESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRG 955
Score = 198 bits (498), Expect = 3e-49
Identities = 114/292 (39%), Positives = 166/292 (56%), Gaps = 43/292 (14%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + ++I K +++ GDK+AGRHGNKG++S+I+ +DMP+L+DG VD+V NPLG+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 862 NVGQIFECSLGLAGDVLDRHYRIAPFDERYEQ-----EASRKLVFS-------------- 902
N+GQI E LG A L + +I+ + Y+ E +K +
Sbjct: 1138 NIGQILETHLGWASINLAK--KISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPE 1195
Query: 903 -ELYQASKQTSNPWIFEP--------------------EYPGKSRIFDGRTGTPFEQPVI 941
E+ K+ S F + G+ ++ DGRTG F++ V
Sbjct: 1196 EEIISFCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVT 1255
Query: 942 IGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHI 1001
+G Y+LKL H VD+KIH RS G Y+LVTQQPL G++ GGQR GEME WAL+ +G A+
Sbjct: 1256 VGQKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYT 1315
Query: 1002 LQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
LQEMLT KSD + R + +I+ G + PESF ++++E RSL L +
Sbjct: 1316 LQEMLTVKSDDVNGRIKTY-DSIVRGENNFESGIPESFNVMIKEFRSLCLNV 1366
Score = 85.4 bits (208), Expect = 3e-15
Identities = 56/181 (30%), Positives = 98/181 (53%), Gaps = 14/181 (7%)
Query: 28 DRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGL- 86
++GL L I D+ + FV+ Y+ P ++ SL+Y++ L V+ L
Sbjct: 59 NKGLQSILNSIFPISDSSNIANLE-FVK-YEFDTPKYDVEECSQRSLSYAAPLKVTLRLS 116
Query: 87 IW--------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY---Q 135
IW + K I+EQ +++G+IPLM GT I+NG R+V++Q+ +SPG+++ +
Sbjct: 117 IWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDE 176
Query: 136 SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ G +Y+ +I G L+LE D K I+ R+ RK+K+ L A+G + EI+
Sbjct: 177 GKVHSSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEII 236
Query: 196 E 196
+
Sbjct: 237 K 237
>gb|AAF22431.1| (AF076433) RNA polymerase beta subunit; RpoB [Rickettsia massiliae]
Length = 1373
Score = 437 bits (1113), Expect = e-121
Identities = 250/625 (40%), Positives = 377/625 (60%), Gaps = 22/625 (3%)
Query: 182 VLSSAMGSNLNEILENV-CYPEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFP 240
V+++ N+N ++ N P I + DK + +E+A+ + +R G+P
Sbjct: 342 VINALKIKNVNVLVINPQSGPYIRNTLFADKNQ----DREAALCDIFRVLR--PGEPANI 395
Query: 241 ESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFR 299
E+ FF R +L E+GR MN RL L+I + T L DI L+ +K
Sbjct: 396 EAAESLFYNLFFDVDRYDLSEVGRIKMNSRLELNISEEVTVLTIDDIKNIVRVLVELKDG 455
Query: 300 MGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE-NMVRGTICGAIRYKLIPTPQNLVTS 358
G +DD++HL N+R+RSV +L+++QF + LVR+E +++ G + + P +LV S
Sbjct: 456 KGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSAGDVDTVM---PHDLVNS 512
Query: 359 TPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHY 418
L + + FF LSQ +D+TNPL++I H R+LS LGPGGL+ A F +RD+H +HY
Sbjct: 513 KILVSVVKEFFNTSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRDRAGFEVRDVHPTHY 572
Query: 419 GRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYM 478
GRICPI+T EG N+GLI S+A +ARI + G IESP+ + + ++YLS + Y
Sbjct: 573 GRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDGCVTDEVVYLSAIEEGKYK 632
Query: 479 IATGNYLALNQGNQEEQIVPARYRQ-EFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHN 537
I N G + + + R F+ + +V + Q S+ ASLIPF+E++
Sbjct: 633 IGQANSKVNKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVTPMQVVSVAASLIPFLEND 692
Query: 538 DANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL 597
DANRALM SNMQRQAVPL +++ VGTG+E VA DSG +A H+G + D+N+IV+
Sbjct: 693 DANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASVLALHDGIVEQVDSNRIVI 752
Query: 598 F-------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELS 650
GS L+ +++SN NTC++QK V+ G +K+ I+ADG +T GE++
Sbjct: 753 RTLEQKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHYVKKNDIIADGPSTDNGEIA 812
Query: 651 LGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIP 710
LG+NVLVA++PW GYN ED++LIS+R+V ED++TS HI ++E+ T GPE IT IP
Sbjct: 813 LGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEFEVIARDTRLGPEEITRDIP 872
Query: 711 HLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTS 770
++ LR+LD+ G++ +G+ V+AGDILVGK+TP+ ES PE++LLRAI G +
Sbjct: 873 NVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPK--SESPITPEEKLLRAIFGEKAFDV 930
Query: 771 KETCLKLPIGGRGRVIDVRWLHKKG 795
K++ L +P G G V++VR ++G
Sbjct: 931 KDSSLHVPSGVSGTVVEVRVFSRRG 955
Score = 198 bits (498), Expect = 3e-49
Identities = 114/292 (39%), Positives = 166/292 (56%), Gaps = 43/292 (14%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + ++I K +++ GDK+AGRHGNKG++S+I+ +DMP+L+DG VD+V NPLG+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 862 NVGQIFECSLGLAGDVLDRHYRIAPFDERYEQ-----EASRKLVFS-------------- 902
N+GQI E LG A L + +I+ + Y+ E +K +
Sbjct: 1138 NIGQILETHLGWASINLAK--KISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPE 1195
Query: 903 -ELYQASKQTSNPWIFEP--------------------EYPGKSRIFDGRTGTPFEQPVI 941
E+ K+ S F + G+ ++ DGRTG F++ V
Sbjct: 1196 EEIISFCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVT 1255
Query: 942 IGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHI 1001
+G Y+LKL H VD+KIH RS G Y+LVTQQPL G++ GGQR GEME WAL+ +G A+
Sbjct: 1256 VGQKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYT 1315
Query: 1002 LQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
LQEMLT KSD + R + +I+ G + PESF ++++E RSL L +
Sbjct: 1316 LQEMLTVKSDDVNGRIKTY-DSIVRGENNFESGIPESFNVMIKEFRSLCLNV 1366
Score = 87.4 bits (213), Expect = 8e-16
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 28 DRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGL- 86
++GL L I D+ + FV+ Y+ P ++ SL+Y++ L V+ L
Sbjct: 59 NKGLQSILNSIFPISDSSNIANLE-FVK-YEFDTPKYDVEECSQRSLSYAAPLKVTLRLS 116
Query: 87 IW--------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY---Q 135
IW + K I+EQ +++G+IPLM GT I+NG R+V++Q+ +SPG+++ +
Sbjct: 117 IWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDE 176
Query: 136 SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ G +Y+ +I G L+LE D K I+ R+ RK+K+ I L A+G + EI+
Sbjct: 177 GKVHSSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYITTLLRAIGMSTEEII 236
Query: 196 E 196
+
Sbjct: 237 K 237
>gb|AAF22437.1|AF076436_1 (AF076436) RNA polymerase beta subunit; RpoB [Rickettsia sp. Bar29]
Length = 1373
Score = 436 bits (1110), Expect = e-121
Identities = 242/586 (41%), Positives = 360/586 (61%), Gaps = 17/586 (2%)
Query: 220 ESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNN 278
E+A+ + +R G+P E+ FF +R +L E+GR MN RL L+I +
Sbjct: 377 EAALCDIFRVLR--PGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEEV 434
Query: 279 TFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE-NMVR 337
T L DI L+ +K G +DD++HL N+R+RSV +L+++QF + LVR+E +++
Sbjct: 435 TVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIE 494
Query: 338 GTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397
G + + P +LV S L + + FF LSQ +D+TNPL++I H R+LS LG
Sbjct: 495 RMSAGDVDTVM---PHDLVNSKILVSVVKEFFNTSQLSQFMDQTNPLSEITHKRRLSALG 551
Query: 398 PGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEI 457
PGGL+ A F +RD+H +HYGRICPI+T EG N+GLI S+A +ARI + G IESP+ +
Sbjct: 552 PGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRV 611
Query: 458 SERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQ-EFLTIAWEQVHLR 516
++YLS + Y I N G + + + R F+ + +V
Sbjct: 612 KNGCVTDEVVYLSAIEEGKYKIGQANSKVNKDGKLQGEFINCRVEGGNFVMVEPYEVDFI 671
Query: 517 SIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSG 576
+ Q S+ ASLIPF+E++DANRALM SNMQRQAVPL +++ VGTG+E VA DSG
Sbjct: 672 DVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDSG 731
Query: 577 TLAIAEHEGKIIYKDTNKIVLF-------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRG 629
+A H+G + D+N+IV+ GS L+ +++SN NTC++QK V+ G
Sbjct: 732 ASVLALHDGIVEQVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVG 791
Query: 630 KCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIR 689
+K+ I+ADG +T GE++LG+NVLVA++PW GYN ED++LIS+R+V ED++TS HI
Sbjct: 792 HYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIE 851
Query: 690 KYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKE 749
++E+ T GPE IT IP++ LR+LD+ G++ +G+ V+AGDILVGK+TP+ E
Sbjct: 852 EFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPK--SE 909
Query: 750 SSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
S PE++LLRAI G + K++ L +P G G V++VR ++G
Sbjct: 910 SPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRG 955
Score = 197 bits (495), Expect = 7e-49
Identities = 115/291 (39%), Positives = 169/291 (57%), Gaps = 41/291 (14%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + ++I K +++ GDK+AGRHGNKG++S+I+ +DMP+L+DG VD+V NPLG+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 862 NVGQIFECSLGLAG------------DVLDRHYRIAPFD----ERYEQ------EASRKL 899
N+GQI E LG A + ++H I E Y + E S +
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERSEEE 1197
Query: 900 VFSELYQASKQT--SNPWIFE---------------PEYPGKSRIFDGRTGTPFEQPVII 942
+ S + SK + P +F+ + G+ ++ DGRTG F++ V +
Sbjct: 1198 IISFCKKVSKGVHFATP-VFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTV 1256
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y+LKL H V++KIH RS G Y+LVTQQPL G++ GGQR GEME WAL+ +G A+ L
Sbjct: 1257 GQKYLLKLHHLVNNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTL 1316
Query: 1003 QEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
QEMLT KSD + R + +I+ G + PESF ++++E RSL L +
Sbjct: 1317 QEMLTVKSDDVNGRIKTY-DSIVRGENNFESGIPESFNVMIKEFRSLCLNV 1366
Score = 87.4 bits (213), Expect = 8e-16
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 28 DRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGL- 86
++GL L I D+ + FV+ Y+ P ++ SL+Y++ L V+ L
Sbjct: 59 NKGLQSILNSIFPISDSSNIANLE-FVK-YEFDTPKYDVEECSQRSLSYAAPLKVTLRLS 116
Query: 87 IW--------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY---Q 135
IW + K I+EQ +++G+IPLM GT I+NG R+V++Q+ +SPG+++ +
Sbjct: 117 IWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDE 176
Query: 136 SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ G +Y+ +I G L+LE D K I+ R+ RK+K+ I L A+G + EI+
Sbjct: 177 GKVHSSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYITTLLRAIGMSTEEII 236
Query: 196 E 196
+
Sbjct: 237 K 237
>gb|AAF22435.1| (AF076435) RNA polymerase beta subunit; RpoB [Rickettsia conorii]
Length = 1373
Score = 436 bits (1109), Expect = e-121
Identities = 241/587 (41%), Positives = 362/587 (61%), Gaps = 17/587 (2%)
Query: 219 KESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQN 277
+E+A+ + +R G+P E+ FF +R +L E+GR MN RL L+I +
Sbjct: 376 REAALCDIFRVLR--PGEPANIEAAESLFYNLFFDTERYDLSEVGRIKMNSRLELNISEE 433
Query: 278 NTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE-NMV 336
T L DI L+ +K G +DD++HL N+R+RSV +L+++QF + LVR+E +++
Sbjct: 434 VTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVI 493
Query: 337 RGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYL 396
G + + P +LV S L + + FF LSQ +D+TNPL++I H R+LS L
Sbjct: 494 ERMSAGDVDTVM---PHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSAL 550
Query: 397 GPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFE 456
GPGGL+ A F +RD+H +HYGRICPI+T EG N+GLI S+A +ARI + G IESP+
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRR 610
Query: 457 ISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQ-EFLTIAWEQVHL 515
+ + ++YLS + Y I N G + + + R F+ + +V
Sbjct: 611 VKDGCVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNFVMVEPYEVDF 670
Query: 516 RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDS 575
+ Q S+ ASLIPF+E++DANRALM SNMQRQAVPL +++ VGTG+E VA DS
Sbjct: 671 IDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGTGVEGVVAKDS 730
Query: 576 GTLAIAEHEGKIIYKDTNKIVLF-------GSGETLSVPLVIYRRSNKNTCMHQKSQVQR 628
G +A H+G + D+N+IV+ GS L+ +++SN NTC++QK V+
Sbjct: 731 GASVLALHDGIVEQVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKV 790
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
G +K+ I+ADG +T GE++LG+NVLVA++PW GYN ED++LIS+R+V ED++TS HI
Sbjct: 791 GHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHI 850
Query: 689 RKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAK 748
++E+ T GPE IT IP++ LR+LD+ G++ +G+ V+AGDILVGK+TP+
Sbjct: 851 EEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDILVGKVTPK--S 908
Query: 749 ESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
ES PE++LLRAI G + +++ L +P G G V++VR ++G
Sbjct: 909 ESPITPEEKLLRAIFGEKAFDVEDSSLHVPSGVSGTVVEVRVFSRRG 955
Score = 198 bits (498), Expect = 3e-49
Identities = 114/292 (39%), Positives = 166/292 (56%), Gaps = 43/292 (14%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + ++I K +++ GDK+AGRHGNKG++S+I+ +DMP+L+DG VD+V NPLG+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 862 NVGQIFECSLGLAGDVLDRHYRIAPFDERYEQ-----EASRKLVFS-------------- 902
N+GQI E LG A L + +I+ + Y+ E +K +
Sbjct: 1138 NIGQILETHLGWASINLAK--KISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPE 1195
Query: 903 -ELYQASKQTSNPWIFEP--------------------EYPGKSRIFDGRTGTPFEQPVI 941
E+ K+ S F + G+ ++ DGRTG F++ V
Sbjct: 1196 EEIISFCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVT 1255
Query: 942 IGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHI 1001
+G Y+LKL H VD+KIH RS G Y+LVTQQPL G++ GGQR GEME WAL+ +G A+
Sbjct: 1256 VGQKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYT 1315
Query: 1002 LQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
LQEMLT KSD + R + +I+ G + PESF ++++E RSL L +
Sbjct: 1316 LQEMLTVKSDDVNGRIKTY-DSIVRGENNFESGIPESFNVMIKEFRSLCLNV 1366
Score = 82.7 bits (201), Expect = 2e-14
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 14/181 (7%)
Query: 28 DRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGL- 86
++GL L I D+ + FV+ Y+ P ++ SL+Y++ V+ L
Sbjct: 59 NKGLQSILNSIFPISDSSNIANLE-FVK-YEFDTPKYDVEECSQRSLSYAAPPKVTLRLS 116
Query: 87 IW--------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY---Q 135
IW + K I+EQ +++G+IPLM GT I+NG R+V++Q+ +SPG+++ +
Sbjct: 117 IWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDE 176
Query: 136 SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ G +Y+ +I G L+LE D K I+ R+ RK+K+ L A+G + EI+
Sbjct: 177 GKVHSSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEII 236
Query: 196 E 196
+
Sbjct: 237 K 237
>gb|AAF33499.1| (AF170176) Salmonella typhimurium DNA-directed RNA polymerase,
beta-subunit (RPOB) (SW:P06173) contains similarity to
Pfam domain PF00562 (RNA_pol_B), Score=1088, E=0, N=1
[Salmonella typhimurium LT2]
Length = 1342
Score = 435 bits (1107), Expect = e-120
Identities = 238/584 (40%), Positives = 362/584 (61%), Gaps = 15/584 (2%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ + FF + R +L +GR NR L D + +
Sbjct: 361 SALVEIYRMMR--PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSG 418
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ L+P Q+++ + P++ + FFG LSQ +D+ NPL++I H R++S LGPG
Sbjct: 479 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ +G +E+P+ + +
Sbjct: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVD 596
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ YLS + Y+IA N ++G+ E +V R + E + +QV +
Sbjct: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
+ Q S+GASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A
Sbjct: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716
Query: 580 IAEHEGKIIYKDTNKIVLF--------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
+A+ G + Y D ++IV+ G L Y RSN+NTC++Q V G+
Sbjct: 717 VAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
++RG +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
+ T GPE IT IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 894
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K++ L++P G G VIDV+ + G
Sbjct: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938
Score = 218 bits (549), Expect = 3e-55
Identities = 127/289 (43%), Positives = 172/289 (58%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109
Query: 864 GQIFECSLGLA----GD----VLDRHYRIAPFDERYEQ------EASRKL---VFSE--- 903
GQI E LG+A GD +L + +A E ++ + +K+ FS+
Sbjct: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEV 1169
Query: 904 LYQASKQTSNPWIFEPEYPGKSR-------------------IFDGRTGTPFEQPVIIGN 944
L A I P + G +FDGRTG FE+PV +G
Sbjct: 1170 LRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGY 1229
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE
Sbjct: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337
Score = 86.2 bits (210), Expect = 2e-15
Identities = 56/201 (27%), Positives = 99/201 (48%), Gaps = 18/201 (8%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L IQ + F +FI++ GL I+ E Q +Y+L EP
Sbjct: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNGI 118
++ +TYS+ L V L+ K+I+EQ +++G IPLM GT ++NG
Sbjct: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141
Query: 119 YRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK 175
R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R+
Sbjct: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201
Query: 176 QKISILVLSSAMGSNLNEILE 196
+K+ ++ A+ +IL+
Sbjct: 202 RKLPATIILRALNYTTEQILD 222
>sp|P06173|RPOB_SALTY DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||RNEBBT DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Salmonella
typhimurium
emb|CAA28302.1| (X04642) beta subunit rpoB (AA 1-1342) [Salmonella typhimurium]
Length = 1342
Score = 435 bits (1107), Expect = e-120
Identities = 238/584 (40%), Positives = 362/584 (61%), Gaps = 15/584 (2%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ + FF + R +L +GR NR L D + +
Sbjct: 361 SALVEIYRMMR--PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSG 418
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ L+P Q+++ + P++ + FFG LSQ +D+ NPL++I H R++S LGPG
Sbjct: 479 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ +G +E+P+ + +
Sbjct: 537 GLTRELAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVD 596
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ YLS + Y+IA N ++G+ E +V R + E + +QV +
Sbjct: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
+ Q S+GASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A
Sbjct: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716
Query: 580 IAEHEGKIIYKDTNKIVLF--------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
+A+ G + Y D ++IV+ G L Y RSN+NTC++Q V G+
Sbjct: 717 VAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
++RG +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
+ T GPE IT IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 894
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K++ L++P G G VIDV+ + G
Sbjct: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938
Score = 218 bits (549), Expect = 3e-55
Identities = 127/289 (43%), Positives = 172/289 (58%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109
Query: 864 GQIFECSLGLA----GD----VLDRHYRIAPFDERYEQ------EASRKL---VFSE--- 903
GQI E LG+A GD +L + +A E ++ + +K+ FS+
Sbjct: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEV 1169
Query: 904 LYQASKQTSNPWIFEPEYPGKSR-------------------IFDGRTGTPFEQPVIIGN 944
L A I P + G +FDGRTG FE+PV +G
Sbjct: 1170 LRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGY 1229
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE
Sbjct: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337
Score = 86.2 bits (210), Expect = 2e-15
Identities = 56/201 (27%), Positives = 99/201 (48%), Gaps = 18/201 (8%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L IQ + F +FI++ GL I+ E Q +Y+L EP
Sbjct: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNGI 118
++ +TYS+ L V L+ K+I+EQ +++G IPLM GT ++NG
Sbjct: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141
Query: 119 YRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK 175
R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R+
Sbjct: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201
Query: 176 QKISILVLSSAMGSNLNEILE 196
+K+ ++ A+ +IL+
Sbjct: 202 RKLPATIILRALNYTTEQILD 222
>gb|AAG59183.1|AE005630_3 (AE005630) RNA polymerase, beta subunit [Escherichia coli O157:H7]
Length = 1342
Score = 435 bits (1106), Expect = e-120
Identities = 240/604 (39%), Positives = 372/604 (60%), Gaps = 16/604 (2%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ + FF + R +L +GR NR L + + +
Sbjct: 361 SALVEIYRMMR--PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ L+P Q+++ + P++ + FFG LSQ +D+ NPL++I H R++S LGPG
Sbjct: 479 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ +G +E+P+ ++++
Sbjct: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ YLS + Y+IA N +G+ E +V R + E + +QV +
Sbjct: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
+ Q S+GASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A
Sbjct: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716
Query: 580 IAEHEGKIIYKDTNKIVLF--------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
+A+ G + Y D ++IV+ G L Y RSN+NTC++Q V G+
Sbjct: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
++RG +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
+ T GPE IT IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 894
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQK 811
PE++LLRAI G + S K++ L++P G G VIDV+ + + G + + I +Q
Sbjct: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ-VFTRDGVEKDKRALEIEEMQX 953
Query: 812 REIK 815
++ K
Sbjct: 954 KQAK 957
Score = 219 bits (553), Expect = 1e-55
Identities = 124/289 (42%), Positives = 175/289 (59%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109
Query: 864 GQIFECSLGLA----GD----VLDRHYRIAPFDE-------------------RYEQEAS 896
GQI E LG+A GD +L + +A E + E
Sbjct: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169
Query: 897 RKL---------VFSELYQASKQTSNPWIFE-PEYP--GKSRIFDGRTGTPFEQPVIIGN 944
+L + + ++ +K+ + + + P G+ R++DGRTG FE+PV +G
Sbjct: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE
Sbjct: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337
Score = 86.2 bits (210), Expect = 2e-15
Identities = 56/201 (27%), Positives = 99/201 (48%), Gaps = 18/201 (8%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L IQ + F +FI++ GL I+ E Q +Y+L EP
Sbjct: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNGI 118
++ +TYS+ L V L+ K+I+EQ +++G IPLM GT ++NG
Sbjct: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141
Query: 119 YRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK 175
R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R+
Sbjct: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201
Query: 176 QKISILVLSSAMGSNLNEILE 196
+K+ ++ A+ +IL+
Sbjct: 202 RKLPATIILRALNYTTEQILD 222
>sp|P00575|RPOB_ECOLI DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||RNECB DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Escherichia
coli
gb|AAB18647.1| (U76222) RNA polymerase beta subunit [Escherichia coli]
gb|AAC76961.1| (AE000472) RNA polymerase, beta subunit [Escherichia coli K12]
Length = 1342
Score = 434 bits (1105), Expect = e-120
Identities = 237/584 (40%), Positives = 363/584 (61%), Gaps = 15/584 (2%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ + FF + R +L +GR NR L + + +
Sbjct: 361 SALVEIYRMMR--PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ L+P Q+++ + P++ + FFG LSQ +D+ NPL++I H R++S LGPG
Sbjct: 479 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ +G +E+P+ ++++
Sbjct: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ YLS + Y+IA N +G+ E +V R + E + +QV +
Sbjct: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
+ Q S+GASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A
Sbjct: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716
Query: 580 IAEHEGKIIYKDTNKIVLF--------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
+A+ G + Y D ++IV+ G L Y RSN+NTC++Q V G+
Sbjct: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
++RG +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
+ T GPE IT IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 894
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K++ L++P G G VIDV+ + G
Sbjct: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938
Score = 219 bits (553), Expect = 1e-55
Identities = 124/289 (42%), Positives = 175/289 (59%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109
Query: 864 GQIFECSLGLA----GD----VLDRHYRIAPFDE-------------------RYEQEAS 896
GQI E LG+A GD +L + +A E + E
Sbjct: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169
Query: 897 RKL---------VFSELYQASKQTSNPWIFE-PEYP--GKSRIFDGRTGTPFEQPVIIGN 944
+L + + ++ +K+ + + + P G+ R++DGRTG FE+PV +G
Sbjct: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE
Sbjct: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337
Score = 86.2 bits (210), Expect = 2e-15
Identities = 56/201 (27%), Positives = 99/201 (48%), Gaps = 18/201 (8%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L IQ + F +FI++ GL I+ E Q +Y+L EP
Sbjct: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNGI 118
++ +TYS+ L V L+ K+I+EQ +++G IPLM GT ++NG
Sbjct: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141
Query: 119 YRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK 175
R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R+
Sbjct: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201
Query: 176 QKISILVLSSAMGSNLNEILE 196
+K+ ++ A+ +IL+
Sbjct: 202 RKLPATIILRALNYTTEQILD 222
>sp|Q51561|RPOB_PSEAE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||H83112 DNA-directed RNA polymerase beta chain PA4270 [imported] -
Pseudomonas aeruginosa (strain PAO1)
gb|AAG07658.1|AE004842_7 (AE004842) DNA-directed RNA polymerase beta chain [Pseudomonas
aeruginosa]
Length = 1357
Score = 434 bits (1103), Expect = e-120
Identities = 252/658 (38%), Positives = 385/658 (58%), Gaps = 34/658 (5%)
Query: 147 TGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIFLS 206
TG II++ L L++ A+V++ Q + I L + N+I C P I +
Sbjct: 311 TGEIIAECNTELTLDL------LAKVAKAQVVRIETLYT------NDI---DCGPFISDT 355
Query: 207 FLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRN 265
D ++ A++E YR G+P E+ FF +R +L +GR
Sbjct: 356 LKIDNTSNQL----EALVEIYRMMR--PGEPPTKEAAETLFGNLFFSAERYDLSAVGRMK 409
Query: 266 MNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQF 325
NRR+ + L DI+ L+ ++ G +DD++HL N+R+R V ++ ++QF
Sbjct: 410 FNRRIGRTEIEGPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQF 469
Query: 326 GLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLT 385
+ LVR+E V+ + A L+P Q+L+ + P+ + FFG LSQ +D+ NPL+
Sbjct: 470 RVGLVRVERAVKERLSMAESEGLMP--QDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLS 527
Query: 386 QIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIG 445
+I H R++S LGPGGLT A F +RD+H +HYGR+CPI+T EG N+GLI SLA +AR
Sbjct: 528 EITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTN 587
Query: 446 RWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEF 505
++G +ESP+ + + +++LS + ++IA + +G +++V R+ EF
Sbjct: 588 KYGFLESPYRVVKDSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEF 647
Query: 506 LTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGT 565
A E V L + Q S+ ASLIPF+EH+DANRALM SNMQRQAVP +++K +VGT
Sbjct: 648 TVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGT 707
Query: 566 GLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV--------PLVIYRRSNKN 617
G+ER VA DSG +A G I D +++V+ + + + L Y RSN+N
Sbjct: 708 GMERNVARDSGVCVVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQN 767
Query: 618 TCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRL 677
TC++Q+ V +G + RG ILADG +T GEL+LG+N+ VA+MPW G+N ED++ +S+R+
Sbjct: 768 TCINQRPLVSKGDVVARGDILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERV 827
Query: 678 VYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDI 737
V ED +T+ HI++ T GPE IT IP++ L LD+ G+V +G+ V+AGDI
Sbjct: 828 VQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDI 887
Query: 738 LVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
LVGK+TP+ E+ PE++LLRAI G + S K+T L++P G +G VIDV+ + G
Sbjct: 888 LVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDG 943
Score = 220 bits (556), Expect = 5e-56
Identities = 126/288 (43%), Positives = 171/288 (58%), Gaps = 40/288 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG+VS I+ +DMP+ +G PVD+V NPLGVPSRMNV
Sbjct: 1067 VKVYLAIKRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNV 1126
Query: 864 GQIFECSLGLAGD--------VLDRHYRIAPF----DERYEQEASRKLVFSEL------- 904
GQI E LGLA +L+ ++A E Y + R+ EL
Sbjct: 1127 GQILETHLGLAAKGLGEKINRMLEEQRKVAELRKFLHEIYNEIGGREENLDELGDNEILA 1186
Query: 905 ---------------YQASKQTSNPWIFE----PEYPGKSRIFDGRTGTPFEQPVIIGNP 945
+ +K+ + + PE G+ R+FDGRTG FE+P +G
Sbjct: 1187 LAKNLRGGVPMATPVFDGAKEREIKAMLKLADLPE-SGQMRLFDGRTGNQFERPTTVGYM 1245
Query: 946 YILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEM 1005
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQEM
Sbjct: 1246 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1305
Query: 1006 LTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
LT KSD + R ++ I+ G PESF +L++E+RSL +++
Sbjct: 1306 LTVKSDDVNGRTKMY-KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDI 1352
Score = 93.2 bits (228), Expect = 1e-17
Identities = 64/214 (29%), Positives = 106/214 (48%), Gaps = 24/214 (11%)
Query: 12 LPGLNQIQFEGFCRFIDRGLTEELFK-----------FPKIEDTDQEIEFQLFVETYQLV 60
+P L IQ + + F+ G T+E F+ FP I + L Y+L
Sbjct: 24 VPYLLAIQLDSYREFLQAGATKEQFRDVGLHAAFKSVFPIISYSGNAA---LEYVGYRLG 80
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIW-------KNSKNIQEQTIFIGNIPLMNSLGTS 113
EP+ K+ V +T++ L V LI K K+I+EQ +++G IPLM GT
Sbjct: 81 EPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNKAIKDIKEQEVYMGEIPLMTENGTF 140
Query: 114 IVNGIYRIVINQILQSPGIYY---QSELDHKGISVYTGTIISDWGGRLELEIDRKARIWA 170
I+NG R++++Q+ +SPG+++ + + G +Y+ II G L+ E D K ++
Sbjct: 141 IINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVFV 200
Query: 171 RVSRKQKISILVLSSAMGSNLNEILENVCYPEIF 204
R+ R++K+ VL A+G + EIL +F
Sbjct: 201 RIDRRRKLPASVLLRALGYSTEEILNAFYATNVF 234
>gb|AAA27215.1| (M38311) RNA polymerase (EC 2.7.7.6) [Salmonella typhimurium]
Length = 958
Score = 433 bits (1101), Expect = e-120
Identities = 237/584 (40%), Positives = 361/584 (61%), Gaps = 15/584 (2%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ + FF + R +L + R NR L D + +
Sbjct: 175 SALVEIYRMMR--PGEPPTREAAESLFENLFFSEDRYDLSAVARMKFNRSLLRDEIEGSG 232
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 233 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 292
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ L+P Q+++ + P++ + FFG LSQ +D+ NPL++I H R++S LGPG
Sbjct: 293 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 350
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ +G +E+P+ + +
Sbjct: 351 GLTRELAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVD 410
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ YLS + Y+IA N ++G+ E +V R + E + +QV +
Sbjct: 411 GVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 470
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
+ Q S+GASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A
Sbjct: 471 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 530
Query: 580 IAEHEGKIIYKDTNKIVLF--------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
+A+ G + Y D ++IV+ G L Y RSN+NTC++Q V G+
Sbjct: 531 VAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 590
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
++RG +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 591 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 650
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
+ T GPE IT IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 651 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 708
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K++ L++P G G VIDV+ + G
Sbjct: 709 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 752
Score = 99.5 bits (244), Expect = 2e-19
Identities = 44/71 (61%), Positives = 57/71 (79%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 864 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 923
Query: 864 GQIFECSLGLA 874
GQI E LG+A
Sbjct: 924 GQILETHLGMA 934
>gb|AAC43085.1| (U00006) DNA-directed RNA polymerase, beta-subunit [Escherichia
coli]
Length = 1342
Score = 432 bits (1098), Expect = e-119
Identities = 236/584 (40%), Positives = 362/584 (61%), Gaps = 15/584 (2%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ + FF + R +L +GR NR L + + +
Sbjct: 361 SALVEIYRMMR--PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ L+P Q+++ + P++ + FFG LSQ + + NPL++I H R++S LGPG
Sbjct: 479 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMXQNNPLSEITHKRRISALGPG 536
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ +G +E+P+ ++++
Sbjct: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ YLS + Y+IA N +G+ E +V R + E + +QV +
Sbjct: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
+ Q S+GASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A
Sbjct: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716
Query: 580 IAEHEGKIIYKDTNKIVLF--------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
+A+ G + Y D ++IV+ G L Y RSN+NTC++Q V G+
Sbjct: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
++RG +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
+ T GPE IT IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 894
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K++ L++P G G VIDV+ + G
Sbjct: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938
Score = 219 bits (553), Expect = 1e-55
Identities = 124/289 (42%), Positives = 175/289 (59%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109
Query: 864 GQIFECSLGLA----GD----VLDRHYRIAPFDE-------------------RYEQEAS 896
GQI E LG+A GD +L + +A E + E
Sbjct: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169
Query: 897 RKL---------VFSELYQASKQTSNPWIFE-PEYP--GKSRIFDGRTGTPFEQPVIIGN 944
+L + + ++ +K+ + + + P G+ R++DGRTG FE+PV +G
Sbjct: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE
Sbjct: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337
Score = 85.8 bits (209), Expect = 2e-15
Identities = 56/201 (27%), Positives = 98/201 (47%), Gaps = 18/201 (8%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L IQ + F +FI++ GL I+ E Q Y+L EP
Sbjct: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--XYRLGEPVFD 81
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNGI 118
++ +TYS+ L V L+ K+I+EQ +++G IPLM GT ++NG
Sbjct: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141
Query: 119 YRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK 175
R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R+
Sbjct: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201
Query: 176 QKISILVLSSAMGSNLNEILE 196
+K+ ++ A+ +IL+
Sbjct: 202 RKLPATIILRALNYTTEQILD 222
>prf||0705170A polymerase beta,RNA [Escherichia coli]
Length = 1342
Score = 431 bits (1096), Expect = e-119
Identities = 236/584 (40%), Positives = 362/584 (61%), Gaps = 15/584 (2%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ + FF + R +L +GR NR L + + +
Sbjct: 361 SALVEIYRMMR--PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ L+P Q+++ + P++ + FFG LSQ + + NPL++I H R++S LGPG
Sbjct: 479 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRISALGPG 536
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ +G +E+P+ ++++
Sbjct: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ YLS + Y+IA N +G+ E +V R + E + +QV +
Sbjct: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
+ Q S+GASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A
Sbjct: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716
Query: 580 IAEHEGKIIYKDTNKIVLF--------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
+A+ G + Y D ++IV+ G L Y RSN+NTC++Q V G+
Sbjct: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
++RG +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
+ T GPE IT IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 894
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K++ L++P G G VIDV+ + G
Sbjct: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938
Score = 219 bits (553), Expect = 1e-55
Identities = 124/289 (42%), Positives = 175/289 (59%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109
Query: 864 GQIFECSLGLA----GD----VLDRHYRIAPFDE-------------------RYEQEAS 896
GQI E LG+A GD +L + +A E + E
Sbjct: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169
Query: 897 RKL---------VFSELYQASKQTSNPWIFE-PEYP--GKSRIFDGRTGTPFEQPVIIGN 944
+L + + ++ +K+ + + + P G+ R++DGRTG FE+PV +G
Sbjct: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE
Sbjct: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337
Score = 85.0 bits (207), Expect = 4e-15
Identities = 55/201 (27%), Positives = 99/201 (48%), Gaps = 18/201 (8%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L IQ + F +FI++ GL I+ E Q +Y+L EP
Sbjct: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNGI 118
++ +TYS+ L V L+ K+I+E+ +++G IPLM GT ++NG
Sbjct: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEEEVYMGEIPLMTDNGTFVINGT 141
Query: 119 YRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK 175
R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R+
Sbjct: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201
Query: 176 QKISILVLSSAMGSNLNEILE 196
+K+ ++ A+ +IL+
Sbjct: 202 RKLPATIILRALNYTTEQILD 222
>gb|AAA24585.1| (M38287) RNA polymerase beta subunit (EC 2.7.7.6) [Escherichia
coli]
prf||0607192A polymerase beta,RNA [Escherichia coli]
Length = 958
Score = 431 bits (1096), Expect = e-119
Identities = 236/584 (40%), Positives = 362/584 (61%), Gaps = 15/584 (2%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ + FF + R +L +GR NR L + + +
Sbjct: 175 SALVEIYRMMR--PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 232
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 233 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 292
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ L+P Q+++ + P++ + FFG LSQ + + NPL++I H R++S LGPG
Sbjct: 293 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRISALGPG 350
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ +G +E+P+ ++++
Sbjct: 351 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 410
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ YLS + Y+IA N +G+ E +V R + E + +QV +
Sbjct: 411 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 470
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
+ Q S+GASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A
Sbjct: 471 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 530
Query: 580 IAEHEGKIIYKDTNKIVLF--------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
+A+ G + Y D ++IV+ G L Y RSN+NTC++Q V G+
Sbjct: 531 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 590
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
++RG +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 591 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 650
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
+ T GPE IT IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 651 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 708
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K++ L++P G G VIDV+ + G
Sbjct: 709 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 752
Score = 99.5 bits (244), Expect = 2e-19
Identities = 44/71 (61%), Positives = 57/71 (79%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 864 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 923
Query: 864 GQIFECSLGLA 874
GQI E LG+A
Sbjct: 924 GQILETHLGMA 934
>emb|CAA23625.1| (V00339) rpoB [Escherichia coli]
emb|CAA23627.1| (V00340) coding sequence [Escherichia coli]
prf||0808236A polymerase beta,RNA [Escherichia coli]
Length = 1342
Score = 431 bits (1096), Expect = e-119
Identities = 236/584 (40%), Positives = 362/584 (61%), Gaps = 15/584 (2%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ + FF + R +L +GR NR L + + +
Sbjct: 361 SALVEIYRMMR--PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ L+P Q+++ + P++ + FFG LSQ + + NPL++I H R++S LGPG
Sbjct: 479 LSLGDLDTLMP--QDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRISALGPG 536
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ +G +E+P+ ++++
Sbjct: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ YLS + Y+IA N +G+ E +V R + E + +QV +
Sbjct: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
+ Q S+GASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A
Sbjct: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716
Query: 580 IAEHEGKIIYKDTNKIVLF--------GSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
+A+ G + Y D ++IV+ G L Y RSN+NTC++Q V G+
Sbjct: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
++RG +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
+ T GPE IT IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQ 894
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K++ L++P G G VIDV+ + G
Sbjct: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938
Score = 219 bits (553), Expect = 1e-55
Identities = 124/289 (42%), Positives = 175/289 (59%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109
Query: 864 GQIFECSLGLA----GD----VLDRHYRIAPFDE-------------------RYEQEAS 896
GQI E LG+A GD +L + +A E + E
Sbjct: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169
Query: 897 RKL---------VFSELYQASKQTSNPWIFE-PEYP--GKSRIFDGRTGTPFEQPVIIGN 944
+L + + ++ +K+ + + + P G+ R++DGRTG FE+PV +G
Sbjct: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQE
Sbjct: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337
Score = 86.2 bits (210), Expect = 2e-15
Identities = 56/201 (27%), Positives = 99/201 (48%), Gaps = 18/201 (8%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L IQ + F +FI++ GL I+ E Q +Y+L EP
Sbjct: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNGI 118
++ +TYS+ L V L+ K+I+EQ +++G IPLM GT ++NG
Sbjct: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141
Query: 119 YRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK 175
R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R+
Sbjct: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201
Query: 176 QKISILVLSSAMGSNLNEILE 196
+K+ ++ A+ +IL+
Sbjct: 202 RKLPATIILRALNYTTEQILD 222
>sp|O87903|RPOB_COXBU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
gb|AAC61666.1| (U86688) RNA polymerase beta-subunit [Coxiella burnetii]
Length = 1375
Score = 430 bits (1094), Expect = e-119
Identities = 241/584 (41%), Positives = 357/584 (60%), Gaps = 16/584 (2%)
Query: 222 AILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTF 280
A++E YR G+P E+ + FF +R L +GR NRR+
Sbjct: 383 ALVEIYRIMR--PGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNRRVGRKELTGLDV 440
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
L DI+ L+ ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+ +
Sbjct: 441 LSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKDRL 500
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
A L+P Q+LV + P++ + FFG LSQ +D+ NPL++I H R++S LGPGG
Sbjct: 501 SLADVENLMP--QDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGG 558
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
LT A F +RD+H +HYGR+CPI+T EG N+GLI SLA+ AR +G +E+P+ ++ +R
Sbjct: 559 LTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFLETPYRKVVDR 618
Query: 461 SKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
YLS + Y IA N +G + ++ RY+ EF ++++ +
Sbjct: 619 VVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTPDKINYMDVSP 678
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q S+ A+LIPF+EH+DANRALM SNMQRQAVP + E +VGTG+ER VA+DSG I
Sbjct: 679 RQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGMERTVAVDSGVTVI 738
Query: 581 AEHEGKIIYKDTNKIVL------FGSGETLSVP---LVIYRRSNKNTCMHQKSQVQRGKC 631
A+ G I D ++IV+ + + V L + RSN+NTC++Q V+ G
Sbjct: 739 AKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTCINQHPIVEVGDK 798
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
+++G +LADG +T GEL+LG+N+LVA+MPW GYN ED++LIS+RLV ED +T+ HI+++
Sbjct: 799 VQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVEEDRFTTIHIQEF 858
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
T GPE IT+ IP++ L LD++G+V +G+ V AGDILVGK+TP+ E+
Sbjct: 859 TCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGKVTPK--GETQ 916
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K+T L++ G G VIDVR ++G
Sbjct: 917 LTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIDVRIFTREG 960
Score = 219 bits (553), Expect = 1e-55
Identities = 124/290 (42%), Positives = 170/290 (57%), Gaps = 44/290 (15%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++S I+ +DMPYL+DG PVD+V NPLGVPSRMN+
Sbjct: 1085 VKVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNI 1144
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASK-------------- 909
GQ+ E LG A L + +I E+ + +Y SK
Sbjct: 1145 GQVLETHLGWAAKGLGK--KIGEMIEKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEI 1202
Query: 910 -----------QTSNPWIFE-------------PEYP--GKSRIFDGRTGTPFEQPVIIG 943
S+P +F+ + P G++ ++DGRTG F++ V +G
Sbjct: 1203 VMLAKNLRKGVPISSP-VFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVG 1261
Query: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQ 1003
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQ
Sbjct: 1262 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1321
Query: 1004 EMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
EMLT KSD + R + I+ G PESF +LV+E+RSLA+++
Sbjct: 1322 EMLTVKSDDVAGRTRMY-KNIVDGDHRMDAGMPESFNVLVKEIRSLAIDI 1370
Score = 76.9 bits (186), Expect = 1e-12
Identities = 41/135 (30%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 74 LTYSSELYVSAGLIW---------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVIN 124
LTY++ L V+ L+ K K+I+EQ +++G IPLM G+ ++NG R+V++
Sbjct: 108 LTYAAPLKVNMRLVIYDKEAPAGKKAIKDIKEQEVYMGEIPLMTETGSLVINGTERVVVS 167
Query: 125 QILQSPGIYYQ---SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISIL 181
Q+ +SPG++++ + G +Y+ +I G L+ E D K ++ R+ R++K+
Sbjct: 168 QLHRSPGVFFEHDKGKTHSSGKLLYSARVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPAT 227
Query: 182 VLSSAMGSNLNEILE 196
V+ A+G + +IL+
Sbjct: 228 VILRALGYDTEQILD 242
>sp|P43738|RPOB_HAEIN DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||H64073 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Haemophilus
influenzae (strain Rd KW20)
gb|AAC22173.1| (U32733) DNA-directed RNA polymerase, beta chain (rpoB)
[Haemophilus influenzae Rd]
Length = 1343
Score = 426 bits (1083), Expect = e-118
Identities = 242/607 (39%), Positives = 363/607 (58%), Gaps = 17/607 (2%)
Query: 219 KESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQN 277
K SA+ E YR G+P PES FF +R +L +GR NR L +
Sbjct: 359 KTSALYEIYRMMR--PGEPPTPESSEALFNNLFFSAERYDLSTVGRMKFNRSLAFPEGEG 416
Query: 278 NTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVR 337
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 417 AGILSNEDIIAVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVK 476
Query: 338 GTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397
+ + TPQ+L+ P++ + FFG LSQ +D+ NPL+++ H R++S LG
Sbjct: 477 ERLSLGDLDAI--TPQDLINPKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG 534
Query: 398 PGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEI 457
PGGLT A F +RD+H++HYGR+CPI+T EG N+GLI SL+ AR +G +E+P+ ++
Sbjct: 535 PGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 594
Query: 458 SERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPAR-YRQEFLTIAWEQVHLR 516
+ + YLS + Y+IA N + V AR R E E +H
Sbjct: 595 VDGQVTEEIEYLSVIDEANYIIAQANSNLDENNRFTDAFVTARGERGESGLYKPEDIHYM 654
Query: 517 SIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSG 576
+ + Q S+ A+LIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+E+ +ALDSG
Sbjct: 655 DVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSG 714
Query: 577 TLAIAEHEGKIIYKDTNKIVL-FGSGETLS-------VPLVIYRRSNKNTCMHQKSQVQR 628
+A+ G + Y D ++IV+ ET++ L+ Y RSN+NTC++Q V
Sbjct: 715 VAVVAKRGGTVQYVDASRIVIKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPCVNL 774
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
G I RG++LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V +D +T+ HI
Sbjct: 775 GDPINRGEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTTIHI 834
Query: 689 RKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAK 748
++ T G E IT IP++ L LD++G+V +G+ V+ GDILVGK+TP+
Sbjct: 835 QELSCVARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPK--G 892
Query: 749 ESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYI 808
E+ PE++LLRAI G + S K++ L++P G G VIDV+ + + G + + I
Sbjct: 893 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQ-VFTRDGVEKDKRALEIEE 951
Query: 809 LQKREIK 815
+Q RE K
Sbjct: 952 MQLREAK 958
Score = 218 bits (549), Expect = 3e-55
Identities = 126/291 (43%), Positives = 174/291 (59%), Gaps = 40/291 (13%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + +Y+ KR+I+ GDK+AGRHGNKG++SKI +DMPY ++G+PV++V NPLGVPSRM
Sbjct: 1049 KVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNPLGVPSRM 1108
Query: 862 NVGQIFECSLGLA----GDVLDRHYRIAPFDER---YEQEA-------SRKLVFSE---- 903
N+GQI E LGLA GD ++ + E+ Y Q+A S+K+ S
Sbjct: 1109 NIGQILETHLGLAAKGIGDQINAMLKQKQEVEKLRSYIQKAYDLLGNGSQKVDLSTFTDE 1168
Query: 904 --LYQASKQTSNPWIFEPEYPGKSR-------------------IFDGRTGTPFEQPVII 942
L A + P + G ++DGRTG FE+PV +
Sbjct: 1169 EVLRLAGNLRKGLPVATPVFDGADEAEIKELLKLGGLPTSGQITLYDGRTGEKFERPVTV 1228
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ L
Sbjct: 1229 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1288
Query: 1003 QEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
QEMLT KSD + R ++ + G +P PESF ++++E+RSL L +
Sbjct: 1289 QEMLTVKSDDVNGRTKMYKNIVSGNQHMEP-GTPESFNVIMKEIRSLGLNI 1338
Score = 89.7 bits (219), Expect = 2e-16
Identities = 63/218 (28%), Positives = 109/218 (49%), Gaps = 23/218 (10%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFK--FPKIEDTDQEIEFQLFVETYQLVEPS 63
+P L IQ + F +FI + GL E F+ FP + + +L Y+L EP
Sbjct: 24 VPYLLTIQLDSFDKFIQKDPEGQQGL-EAAFRSVFPIVSNNGYT---ELQYVDYRLEEPE 79
Query: 64 IKEKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVN 116
++ TY++ L V L+ + K+I+E +++G IPLM GT ++N
Sbjct: 80 FDVRECQIRGSTYAAGLRVKLRLVSYDKESSSRAVKDIKENEVYMGEIPLMTDNGTFVIN 139
Query: 117 GIYRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVS 173
G R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++AR+
Sbjct: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARID 199
Query: 174 RKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDK 211
R++K+ ++ A+G EIL N+ + +I DK
Sbjct: 200 RRRKLPATIILRALGYTTEEIL-NLFFDKITFEIAGDK 236
>sp|P57146|RPOB_BUCAI DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
dbj|BAB12761.1| (AP001118) DNA-directed RNA polymerase beta chain [Buchnera sp.
APS]
Length = 1342
Score = 425 bits (1082), Expect = e-117
Identities = 249/665 (37%), Positives = 395/665 (58%), Gaps = 30/665 (4%)
Query: 172 VSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLND-------KEEKKIGSKE---S 221
V +K +I+ ++ + + E L+ + + I F ND E +I S S
Sbjct: 302 VDKKTGETIISSNTELSLEILEKLKKLGFYSIETLFTNDLDHGPYISETLRIDSSNDRMS 361
Query: 222 AILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNTF 280
A++E YR G+P E+ + FF + R +L +GR NR L + + ++
Sbjct: 362 ALIEIYRVMR--PGEPPTKEATENLFENLFFSEDRYDLSTVGRMKFNRSLLREETKGSST 419
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
L DI+ +I ++ G +DD++HL N+R+RSV ++ ++QF + LVR+E V+ +
Sbjct: 420 LNKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRVERAVKERL 479
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
L+P Q+++ + P++ + FFG LSQ +D+ NPL++I H R++S LG GG
Sbjct: 480 SIGDLDALMP--QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGLGG 537
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
LT A F +RD+H +HYGR+CPI+T EG N+GLI SL+++A+ G +E+P+ ++
Sbjct: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSHGFLETPYRKVCNG 597
Query: 461 --SKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSI 518
S+ IH YLS + Y+IA N G + +V R++ E QV+ +
Sbjct: 598 LVSEEIH--YLSAIEEGNYIIAQANTNIDKTGFFTDDLVTCRHKGESSLFNRNQVNYMDV 655
Query: 519 FSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTL 578
+ Q S+GASLIPF EH+DANRALM +NMQRQAVP +++K ++GTG+ER VA+DSG
Sbjct: 656 STQQIVSVGASLIPFPEHDDANRALMGANMQRQAVPTLKTDKPLIGTGMERAVAVDSGVT 715
Query: 579 AIAEHEGKIIYKDTNKIVLFGSGETL--------SVPLVIYRRSNKNTCMHQKSQVQRGK 630
A+A+ G + Y D ++IV+ + + L Y RSN+NTC++Q+ V G+
Sbjct: 716 AVAKRSGVVQYVDASRIVIKVDEKEMYSREAGIDIYNLTKYTRSNQNTCINQQPCVNLGE 775
Query: 631 CIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRK 690
IK+G +LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V ED +T+ HI++
Sbjct: 776 KIKKGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835
Query: 691 YEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKES 750
+ T G E I++ IP++ L LD++G+V +G+ V GDILVGK+TP+ E+
Sbjct: 836 LSCISRDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GET 893
Query: 751 SYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQ 810
PE++LLRAI G + S K++ L++P G G VIDV+ + + G + + I +Q
Sbjct: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ-IFTRDGVKKDKRALEIEDMQ 952
Query: 811 KREIK 815
++IK
Sbjct: 953 LKKIK 957
Score = 216 bits (545), Expect = 1e-54
Identities = 125/289 (43%), Positives = 173/289 (59%), Gaps = 40/289 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR+I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 1050 VKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVPSRMNI 1109
Query: 864 GQIFECSLGLA----GDVLD------------RHYRIAPFD--ERYEQEASRKLVFSE-L 904
GQI E LG+A GD ++ R + FD + Q+ + +E +
Sbjct: 1110 GQILETHLGMAAKGIGDKINHMLKTQEKISNLRKFIQKAFDLGDNLRQKVNLDTFSNEEI 1169
Query: 905 YQASKQTSNPW-IFEPEYPGKSR-------------------IFDGRTGTPFEQPVIIGN 944
+ +K N I P + G +FDGRTG FE+PV +G
Sbjct: 1170 LRLAKNLKNGIPISTPVFDGAQENEIKQMLKFAGLPTSGQIILFDGRTGEKFERPVTVGY 1229
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G ++ LQE
Sbjct: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQE 1289
Query: 1005 MLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
MLT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337
Score = 89.7 bits (219), Expect = 2e-16
Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 21/217 (9%)
Query: 12 LPGLNQIQFEGFCRFIDRGLT-----EELFK--FPKIEDTDQEIEFQLFVETYQLVEPSI 64
+P L IQ F +FI L+ E F+ FP I + E Q +Y+L E
Sbjct: 24 IPYLLSIQLNSFKKFIQPDLSGQHGLEAAFRSVFP-IRGYNGNSELQYV--SYRLGETIF 80
Query: 65 KEKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNG 117
K+ TYS+ L V L+ K+I+EQ +++G IPLM + GT I+NG
Sbjct: 81 DVKECQIRGATYSAALRVKLRLVIYERDILEATVKDIKEQEVYMGEIPLMTNNGTFIING 140
Query: 118 IYRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSR 174
R+V++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R
Sbjct: 141 TERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200
Query: 175 KQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDK 211
++K+ + ++ A+ N EIL N+ + + N+K
Sbjct: 201 RRKLPVSIILRALNYNTEEIL-NIFFEKNIFKIENNK 236
>pir||F82336 DNA-directed RNA polymerase, beta chain VC0328 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF93501.1| (AE004121) DNA-directed RNA polymerase, beta subunit [Vibrio
cholerae]
Length = 1375
Score = 423 bits (1075), Expect = e-117
Identities = 249/664 (37%), Positives = 385/664 (57%), Gaps = 37/664 (5%)
Query: 172 VSRKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKE----------S 221
++ Q+IS+ L++ L Y ++ + F ND + S+ S
Sbjct: 345 ITANQEISLEALAN---------LSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRIS 395
Query: 222 AILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTF 280
A++E YR G+P E+ + FF +R +L +GR N + + +
Sbjct: 396 ALVEIYRMMR--PGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGT 453
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+ +
Sbjct: 454 LDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 513
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
++P Q+L+ + P++ + FFG LSQ +D+ NPL+++ H R++S LGPGG
Sbjct: 514 SLGDLDNVMP--QDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGG 571
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
LT A F +RD+H +HYGR+CPI+T EG N+GLI SL+ AR +G +E+P+ +
Sbjct: 572 LTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNG 631
Query: 461 SKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
+ YLS + ++IA N +G +++V AR + E E V + +
Sbjct: 632 VVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVAT 691
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q SI ASLIPF+EH+DANRALM +NMQRQAVP +SEK +VGTG+ER VA+DSG A+
Sbjct: 692 NQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAV 751
Query: 581 AEHEGKIIYKDTNKIVLFGSGETLSVP---------LVIYRRSNKNTCMHQKSQVQRGKC 631
A+ G I D ++IV+ + E L +P L Y RSN+NTC++Q+ V G+
Sbjct: 752 AKRGGVIQSVDASRIVVKVNEEEL-IPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEP 810
Query: 632 IKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY 691
+ RG +LADG +T GEL+LG+N+ +A+MPW GYN ED++L+S+R+V +D +T+ HI++
Sbjct: 811 VARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQEL 870
Query: 692 EIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESS 751
T G E IT IP++ L LD++G+V +G+ V+ GDILVGK+TP+ E+
Sbjct: 871 SCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPK--GETQ 928
Query: 752 YAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQK 811
PE++LLRAI G + S K+T L++P G VIDV+ + + G + + I +Q
Sbjct: 929 LTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQ-VFTRDGVEKDKRALEIEQMQL 987
Query: 812 REIK 815
+E K
Sbjct: 988 KEAK 991
Score = 222 bits (561), Expect = 1e-56
Identities = 126/288 (43%), Positives = 175/288 (60%), Gaps = 39/288 (13%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G+PVD+V NPLGVPSRMN+
Sbjct: 1084 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNI 1143
Query: 864 GQIFECSLGLAG---------------------DVLDRHYRIAPFDERYE-----QEASR 897
GQI E LGLA + L + Y + +R + E R
Sbjct: 1144 GQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVR 1203
Query: 898 KL---------VFSELYQASKQTSNPWIFE-PEYP--GKSRIFDGRTGTPFEQPVIIGNP 945
L V + ++ + ++S + E + P G+ +FDGRTG FE+PV +G
Sbjct: 1204 TLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYM 1263
Query: 946 YILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEM 1005
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQEM
Sbjct: 1264 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1323
Query: 1006 LTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
LT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1324 LTVKSDDVNGRTKMYKNIVDGNHAMEP-GMPESFNVLLKEIRSLGINI 1370
Score = 91.3 bits (223), Expect = 6e-17
Identities = 59/201 (29%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L IQ + F +FI++ GL I+ + E Q +Y+L EP
Sbjct: 58 IPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYV--SYRLGEPVFD 115
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNGI 118
K+ +TYS L V L+ + K+I+EQ +++G IPLM GT ++NG
Sbjct: 116 VKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVYMGEIPLMTENGTFVINGT 175
Query: 119 YRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK 175
R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R+
Sbjct: 176 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYVRIDRR 235
Query: 176 QKISILVLSSAMGSNLNEILE 196
+K+ ++ A+G EIL+
Sbjct: 236 RKLPASIILRALGKTSAEILD 256
>sp|P41184|RPOB_BUCAP DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||S32680 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Buchnera
aphidicola
emb|CAA77970.1| (Z11913) beta subunit of RNA polymerase [Buchnera aphidicola]
prf||2003233A RNA polymerase:SUBUNIT=beta [Buchnera aphidicola]
Length = 1342
Score = 422 bits (1074), Expect = e-117
Identities = 243/636 (38%), Positives = 378/636 (59%), Gaps = 25/636 (3%)
Query: 179 SILVLSSAMGSNLNEILENVCYPEIFLSFLND-------KEEKKIGSKE---SAILEFYR 228
+I++ ++ + + L+N + I F ND E +I S SA++E YR
Sbjct: 309 TIILANTELSLEILTKLKNSSFFSIETLFTNDLDHGPYISETLRIDSSHDRISALMEIYR 368
Query: 229 QFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNTFLLPRDIL 287
G+P+ E+ + FF + R +L +GR NR L + + L DI+
Sbjct: 369 VMR--PGEPLTKEATENLFENLFFSEDRYDLSSVGRMKFNRSLLRKKIEGVSTLNKEDII 426
Query: 288 TAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYK 347
LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+ +
Sbjct: 427 DVIKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLSVGDLDT 486
Query: 348 LIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTAS 407
L+P Q+++ + P++ + FFG LSQ +D+ NPL++I H R++S LG GGLT A
Sbjct: 487 LMP--QDMINAKPISAAIKEFFGSSQLSQFMDQNNPLSEITHKRRISALGLGGLTRERAG 544
Query: 408 FRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHML 467
F +RD+H +HYGR+CPI+T EG N+GLI SL+++AR +G +E+P+ ++ R +
Sbjct: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNSYGFLETPYRKVHNRLVTDEIH 604
Query: 468 YLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIG 527
YLS + Y+IA N + +V R++ E QV + + Q S+G
Sbjct: 605 YLSAIEEGNYVIAQANTNIDKNNYFIDDLVTCRHKGESSLFNCNQVDYMDVSTQQIVSVG 664
Query: 528 ASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKI 587
ASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER VA+DSG +A+ G I
Sbjct: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLVGTGMERAVAVDSGVTVVAKRGGII 724
Query: 588 IYKDTNKIVL-FGSGETLS-------VPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILA 639
Y D ++I++ ET + L Y RSN+NTC++QK V+ + I + +LA
Sbjct: 725 QYIDASRIIIKVNEEETYTGEAGIDIYNLTKYTRSNQNTCINQKPCVKLREKINKNDVLA 784
Query: 640 DGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTS 699
DG +T GEL+LG+N+ VA+MPW GYN ED++L+S+++V ED +T+ HI++ + T
Sbjct: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSEKVVQEDRFTTIHIQELSCISRDTK 844
Query: 700 NGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLL 759
GPE I++ IP++ L LD++G+V +G+ V GDILVGK+TP+ E+ PE++LL
Sbjct: 845 LGPEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQLTPEEKLL 902
Query: 760 RAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
RAI G + S K++ L++P G G VIDV+ + G
Sbjct: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDG 938
Score = 215 bits (543), Expect = 2e-54
Identities = 124/295 (42%), Positives = 172/295 (58%), Gaps = 52/295 (17%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR+I+ GDK+AGRHGNKG++SKI +DMPY ++G PVD+V NPLGVPSRMN+
Sbjct: 1050 VKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVPSRMNI 1109
Query: 864 GQIFECSLGLA-------------------------------GDVLDRHYRIAPFDERYE 892
GQI E LG+A G+ L + + F
Sbjct: 1110 GQILETHLGMAAKGIGNKINNMLKKQEKISNLKKFIQKAFDLGENLRQKVNLDDFSNEEI 1169
Query: 893 QEASRKL---------VF-----SELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQ 938
+ ++ L VF +E+ Q K ++ P G+ +FDGRTG FE+
Sbjct: 1170 LDLAKNLKKGMPISTPVFDGAQENEIKQMLKFSNLPT------SGQISLFDGRTGEKFER 1223
Query: 939 PVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGV 998
PV +G Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G
Sbjct: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283
Query: 999 AHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
++ LQEMLT KSD + R ++ + G +P PESF +L++E+RSL + +
Sbjct: 1284 SYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINI 1337
Score = 86.2 bits (210), Expect = 2e-15
Identities = 63/224 (28%), Positives = 110/224 (48%), Gaps = 19/224 (8%)
Query: 12 LPGLNQIQFEGFCRFID------RGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L IQ + F +FI GL I + E Q +Y+L +
Sbjct: 24 IPYLLSIQLDSFKKFIKIDPEGLHGLEAAFRSVFPICGYNGNSELQYV--SYRLGDAIFD 81
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNGI 118
K+ TYS+ L V L+ K+I+EQ +++G IPLM + GT I+NG
Sbjct: 82 VKECQIRGATYSAPLRVRLRLVIYERDVLEPTVKDIKEQEVYMGEIPLMTNNGTFIINGT 141
Query: 119 YRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK 175
R+V++Q+ +SPG+++ S+ G +Y II G L+ E D K ++ R+ R+
Sbjct: 142 ERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201
Query: 176 QKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSK 219
+K+ + ++ A+ N EIL N+ + + + N+K + ++ S+
Sbjct: 202 RKLPVTIILRALNYNTEEIL-NLFFEKNIFNINNNKIQLELVSE 244
>gb|AAK03821.1| (AE006211) RpoB [Pasteurella multocida]
Length = 1342
Score = 421 bits (1071), Expect = e-116
Identities = 237/595 (39%), Positives = 362/595 (60%), Gaps = 36/595 (6%)
Query: 221 SAILEFYRQFACVGGDPVFPESLCRELQKKFFQQ-RCELGEIGRRNMNRRLNLDIPQNNT 279
SA++E YR G+P E+ FF R +L +GR NR L +D +
Sbjct: 361 SALVEIYRMMR--PGEPPTKEAAEGLFDNLFFSSDRYDLSAVGRMKFNRSLGIDEETGSG 418
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
L DI+ LI ++ G +DD++HL N+RIRSV ++ ++QF + LVR+E V+
Sbjct: 419 ILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKER 478
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ ++ TPQ+L+ + P++ + FFG LSQ +D+ NPL+++ H R++S LGPG
Sbjct: 479 L--SLGDLDAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPG 536
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT A F +RD+H++HYGR+CPI+T EG N+GLI SL+++AR +G +E+P+ ++
Sbjct: 537 GLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRKVVN 596
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWE-------- 511
+ YLS + Y+IA N N +E++ R+ F+T E
Sbjct: 597 GQVTEEIEYLSAIEEGKYVIAQAN------SNLDEEL---RFTDAFVTCRGEHGESGLYR 647
Query: 512 --QVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLER 569
++H + + Q S+ A+LIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+E+
Sbjct: 648 PDEIHYMDVSTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEK 707
Query: 570 QVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSVP---------LVIYRRSNKNTCM 620
VA+DSG IA+ G + Y D ++IV+ E ++P LV Y RSN+NTC+
Sbjct: 708 AVAVDSGVTVIAKRGGMVQYVDASRIVV-KVNEDETIPGEAGIDIYNLVKYTRSNQNTCI 766
Query: 621 HQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYE 680
+Q V G+ I RG++LADG +T GEL+LG+N+ VA+MPW GYN ED++L+S+R+V E
Sbjct: 767 NQIPCVSLGEPIGRGEVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQE 826
Query: 681 DIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVG 740
D +T+ HI++ T G E IT IP++ L LD++G+V +G+ V+ GDILVG
Sbjct: 827 DRFTTIHIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVG 886
Query: 741 KLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
K+TP+ E+ PE++LLRAI G + S K++ L++P G VIDV+ + G
Sbjct: 887 KVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDG 939
Score = 226 bits (571), Expect = 9e-58
Identities = 125/291 (42%), Positives = 176/291 (59%), Gaps = 39/291 (13%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + +Y+ KR+I+ GDK+AGRHGNKG++SKI +DMPY ++G+PVD+V NPLGVPSRM
Sbjct: 1049 KVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRM 1108
Query: 862 NVGQIFECSLGLA----GDVLD------------RHYRIAPFDERYEQEASRKLVFSE-- 903
N+GQI E LGLA GD ++ R Y +D + + FS+
Sbjct: 1109 NIGQILETHLGLAAKGIGDKINAMIKQQQDVAKLREYMQKAYDLGHGSQKVDLSTFSDEE 1168
Query: 904 -----------------LYQASKQTSNPWIFEP---EYPGKSRIFDGRTGTPFEQPVIIG 943
++ + ++ + E G+ +FDGRTG FE+PV +G
Sbjct: 1169 VMRLAQNLRKGLPLATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVG 1228
Query: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQ 1003
Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ LQ
Sbjct: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288
Query: 1004 EMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELN 1054
EMLT KSD + R ++ I+GGT PESF ++++E+RSL + ++
Sbjct: 1289 EMLTVKSDDVNGRTKMY-KNIVGGTHQMDPGTPESFNVIMKEIRSLGINID 1338
Score = 91.3 bits (223), Expect = 6e-17
Identities = 62/218 (28%), Positives = 111/218 (50%), Gaps = 23/218 (10%)
Query: 12 LPGLNQIQFEGFCRFIDR------GLTEELFK--FPKIEDTDQEIEFQLFVETYQLVEPS 63
+P L IQ + F +FI R GL E F+ FP + + +L +YQL EP
Sbjct: 24 VPYLLTIQLDSFDKFIQRDPEGQQGL-EAAFRSVFPIVSNNGNT---ELQYVSYQLGEPV 79
Query: 64 IKEKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVN 116
++ TY++ L V L+ + K+I+EQ +++G IPLM GT ++N
Sbjct: 80 FDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPGTIKDIKEQEVYMGEIPLMTDNGTFVIN 139
Query: 117 GIYRIVINQILQSPGIYYQSE---LDHKGISVYTGTIISDWGGRLELEIDRKARIWARVS 173
G R++++Q+ +SPG+++ S+ G +Y II G L+ E D K ++AR+
Sbjct: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYARID 199
Query: 174 RKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDK 211
R++K+ ++ A+ +IL+ + + ++ N+K
Sbjct: 200 RRRKLPATIILRALNYTTEQILD-IFFDKVVFEISNNK 236
>sp|Q59622|RPOB_NEIMB DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
Length = 1392
Score = 416 bits (1057), Expect = e-115
Identities = 232/618 (37%), Positives = 363/618 (58%), Gaps = 37/618 (5%)
Query: 209 NDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQRC-ELGEIGRRNMN 267
N + +++A + YR G+P E++ + + FF + +L +GR N
Sbjct: 354 NTLRTDETAGRQAARVAIYRMMR--PGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFN 411
Query: 268 RRL---NLDIPQNNTF-------------------LLPRDILTAADHLIGMKFRMGTLDD 305
R L Q N++ L DI+ + L+ ++ G +DD
Sbjct: 412 TRTYEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDD 471
Query: 306 MNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTY 365
++HL N+R+RSV +L ++QF L R+E V+ + A L+P +L+ + P++
Sbjct: 472 IDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMP--HDLINAKPVSAAI 529
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+TNPL+++ H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 530 KEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 589
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++AR +G +E+P+ + + + YLS + Y+IA N
Sbjct: 590 TPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANAD 649
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMS 545
+ GN +V R + E + ++V + + Q S+ ASLIPF+EH+DANRALM
Sbjct: 650 LDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMG 709
Query: 546 SNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLS 605
+NMQRQAVP + EK +VGTG+ER VA+DS T +A G + Y D N++V+ + +
Sbjct: 710 ANMQRQAVPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEAT 769
Query: 606 V--------PLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLV 657
LV + RSN++T ++Q+ V+ G ++RG ++ADGA+T GEL+LG+N+ +
Sbjct: 770 AGEVGVDIYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDFGELALGQNMTI 829
Query: 658 AYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLL 717
A+MPW GYN ED++LIS+++ +D YTS HI + + T G E IT IP+L +
Sbjct: 830 AFMPWNGYNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQ 889
Query: 718 RNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKL 777
LD++G+V +G+ VEAGD+LVGK+TP+ E+ PE++LLRAI G + S K+T L++
Sbjct: 890 NRLDESGIVYIGAEVEAGDVLVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDTSLRM 947
Query: 778 PIGGRGRVIDVRWLHKKG 795
P G G VIDV+ ++G
Sbjct: 948 PTGMSGTVIDVQVFTREG 965
Score = 212 bits (535), Expect = 1e-53
Identities = 122/299 (40%), Positives = 171/299 (56%), Gaps = 49/299 (16%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ ++I KR ++ GDK+AGRHGNKG+VS+IL +DMPY+ DGRPVD+V NPLGVPSRMN+
Sbjct: 1091 VKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPSRMNI 1150
Query: 864 GQIFECSLGLA----GDVLDRHYR-------IAPFDERYEQEASRK-------------- 898
GQI E LG A G+ +DR + + F R + +K
Sbjct: 1151 GQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDLDALTDEEIIEL 1210
Query: 899 --------LVFSELYQASKQTSNPWIFEPEYPGKS---------------RIFDGRTGTP 935
S ++ +K++ + YP ++DGR+G
Sbjct: 1211 ASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQITLYDGRSGEA 1270
Query: 936 FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEG 995
F++ V +G + LKL H VD+K+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE
Sbjct: 1271 FDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1330
Query: 996 FGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELN 1054
+G A+ LQEMLT KSD + R ++ I+ G PESF +LV+E+RSL L+++
Sbjct: 1331 YGAAYTLQEMLTVKSDDVNGRTKMY-ENIVKGEHKIDAGMPESFNVLVKEIRSLGLDID 1388
Score = 76.1 bits (184), Expect = 2e-12
Identities = 40/150 (26%), Positives = 80/150 (52%), Gaps = 10/150 (6%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNS 109
Y L EP + +TY++ L L+ + K ++E +++G IPLM
Sbjct: 77 YTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKEVRENEVYMGEIPLMTP 136
Query: 110 LGTSIVNGIYRIVINQILQSPGIYYQ---SELDHKGISVYTGTIISDWGGRLELEIDRKA 166
G+ ++NG R++++Q+ +SPG++++ + G +++ II G L+ E D K
Sbjct: 137 SGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKD 196
Query: 167 RIWARVSRKQKISILVLSSAMGSNLNEILE 196
++ R+ R++K+ + +L A+G N +IL+
Sbjct: 197 LLYFRIDRRRKMPVTILLKALGYNNEQILD 226
>pir||A81236 DNA-directed RNA polymerase, beta chain NMB0132 [imported] -
Neisseria meningitidis (group B strain MD58)
gb|AAF40591.1| (AE002371) DNA-directed RNA polymerase, beta subunit [Neisseria
meningitidis MC58]
Length = 1394
Score = 416 bits (1057), Expect = e-115
Identities = 232/618 (37%), Positives = 363/618 (58%), Gaps = 37/618 (5%)
Query: 209 NDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQRC-ELGEIGRRNMN 267
N + +++A + YR G+P E++ + + FF + +L +GR N
Sbjct: 356 NTLRTDETAGRQAARVAIYRMMR--PGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFN 413
Query: 268 RRL---NLDIPQNNTF-------------------LLPRDILTAADHLIGMKFRMGTLDD 305
R L Q N++ L DI+ + L+ ++ G +DD
Sbjct: 414 TRTYEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDD 473
Query: 306 MNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTY 365
++HL N+R+RSV +L ++QF L R+E V+ + A L+P +L+ + P++
Sbjct: 474 IDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMP--HDLINAKPVSAAI 531
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+TNPL+++ H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 532 KEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 591
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++AR +G +E+P+ + + + YLS + Y+IA N
Sbjct: 592 TPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANAD 651
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMS 545
+ GN +V R + E + ++V + + Q S+ ASLIPF+EH+DANRALM
Sbjct: 652 LDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMG 711
Query: 546 SNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLS 605
+NMQRQAVP + EK +VGTG+ER VA+DS T +A G + Y D N++V+ + +
Sbjct: 712 ANMQRQAVPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEAT 771
Query: 606 V--------PLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLV 657
LV + RSN++T ++Q+ V+ G ++RG ++ADGA+T GEL+LG+N+ +
Sbjct: 772 AGEVGVDIYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDFGELALGQNMTI 831
Query: 658 AYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLL 717
A+MPW GYN ED++LIS+++ +D YTS HI + + T G E IT IP+L +
Sbjct: 832 AFMPWNGYNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQ 891
Query: 718 RNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKL 777
LD++G+V +G+ VEAGD+LVGK+TP+ E+ PE++LLRAI G + S K+T L++
Sbjct: 892 NRLDESGIVYIGAEVEAGDVLVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDTSLRM 949
Query: 778 PIGGRGRVIDVRWLHKKG 795
P G G VIDV+ ++G
Sbjct: 950 PTGMSGTVIDVQVFTREG 967
Score = 212 bits (535), Expect = 1e-53
Identities = 122/299 (40%), Positives = 171/299 (56%), Gaps = 49/299 (16%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ ++I KR ++ GDK+AGRHGNKG+VS+IL +DMPY+ DGRPVD+V NPLGVPSRMN+
Sbjct: 1093 VKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPSRMNI 1152
Query: 864 GQIFECSLGLA----GDVLDRHYR-------IAPFDERYEQEASRK-------------- 898
GQI E LG A G+ +DR + + F R + +K
Sbjct: 1153 GQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDLDALTDEEIIEL 1212
Query: 899 --------LVFSELYQASKQTSNPWIFEPEYPGKS---------------RIFDGRTGTP 935
S ++ +K++ + YP ++DGR+G
Sbjct: 1213 ASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQITLYDGRSGEA 1272
Query: 936 FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEG 995
F++ V +G + LKL H VD+K+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE
Sbjct: 1273 FDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1332
Query: 996 FGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELN 1054
+G A+ LQEMLT KSD + R ++ I+ G PESF +LV+E+RSL L+++
Sbjct: 1333 YGAAYTLQEMLTVKSDDVNGRTKMY-ENIVKGEHKIDAGMPESFNVLVKEIRSLGLDID 1390
Score = 76.1 bits (184), Expect = 2e-12
Identities = 40/150 (26%), Positives = 80/150 (52%), Gaps = 10/150 (6%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNS 109
Y L EP + +TY++ L L+ + K ++E +++G IPLM
Sbjct: 79 YTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKEVRENEVYMGEIPLMTP 138
Query: 110 LGTSIVNGIYRIVINQILQSPGIYYQ---SELDHKGISVYTGTIISDWGGRLELEIDRKA 166
G+ ++NG R++++Q+ +SPG++++ + G +++ II G L+ E D K
Sbjct: 139 SGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKD 198
Query: 167 RIWARVSRKQKISILVLSSAMGSNLNEILE 196
++ R+ R++K+ + +L A+G N +IL+
Sbjct: 199 LLYFRIDRRRKMPVTILLKALGYNNEQILD 228
>sp|P57009|RPOB_NEIMA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||D82007 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain NMA0142
[imported] - Neisseria meningitidis (group A strain
Z2491)
emb|CAB83457.1| (AL162752) DNA-directed RNA polymerase beta chain [Neisseria
meningitidis Z2491]
Length = 1392
Score = 415 bits (1055), Expect = e-114
Identities = 232/618 (37%), Positives = 363/618 (58%), Gaps = 37/618 (5%)
Query: 209 NDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQRC-ELGEIGRRNMN 267
N + +++A + YR G+P E++ + + FF + +L +GR N
Sbjct: 354 NTLRTDETAGRQAARVAIYRMMR--PGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFN 411
Query: 268 RRL---NLDIPQNNTF-------------------LLPRDILTAADHLIGMKFRMGTLDD 305
R L Q N++ L DI+ + L+ ++ G +DD
Sbjct: 412 TRTYEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDD 471
Query: 306 MNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTY 365
++HL N+R+RSV +L ++QF L R+E V+ + A L+P +L+ + P++
Sbjct: 472 IDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMP--HDLINAKPVSAAI 529
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+TNPL+++ H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 530 KEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 589
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++AR +G +E+P+ + + + YLS + Y+IA N
Sbjct: 590 TPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANAD 649
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMS 545
+ GN +V R + E + ++V + + Q S+ ASLIPF+EH+DANRALM
Sbjct: 650 LDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMG 709
Query: 546 SNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLS 605
+NMQRQAVP + EK +VGTG+ER VA+DS T +A G + Y D N++V+ + +
Sbjct: 710 ANMQRQAVPCLRPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVVRVHDDEAT 769
Query: 606 V--------PLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLV 657
LV + RSN++T ++Q+ V+ G ++RG ++ADGA+T GEL+LG+N+ +
Sbjct: 770 AGEVGVDIYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTI 829
Query: 658 AYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLL 717
A+MPW GYN ED++LIS+++ +D YTS HI + + T G E IT IP+L +
Sbjct: 830 AFMPWNGYNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQ 889
Query: 718 RNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKL 777
LD++G+V +G+ VEAGD+LVGK+TP+ E+ PE++LLRAI G + S K+T L++
Sbjct: 890 NRLDESGIVYIGAEVEAGDVLVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDTSLRM 947
Query: 778 PIGGRGRVIDVRWLHKKG 795
P G G VIDV+ ++G
Sbjct: 948 PTGMSGTVIDVQVFTREG 965
Score = 212 bits (535), Expect = 1e-53
Identities = 122/299 (40%), Positives = 171/299 (56%), Gaps = 49/299 (16%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ ++I KR ++ GDK+AGRHGNKG+VS+IL +DMPY+ DGRPVD+V NPLGVPSRMN+
Sbjct: 1091 VKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPSRMNI 1150
Query: 864 GQIFECSLGLA----GDVLDRHYR-------IAPFDERYEQEASRK-------------- 898
GQI E LG A G+ +DR + + F R + +K
Sbjct: 1151 GQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNGSGKKEDLDALTDEEIIEL 1210
Query: 899 --------LVFSELYQASKQTSNPWIFEPEYPGKS---------------RIFDGRTGTP 935
S ++ +K++ + YP ++DGR+G
Sbjct: 1211 ASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQITLYDGRSGEA 1270
Query: 936 FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEG 995
F++ V +G + LKL H VD+K+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE
Sbjct: 1271 FDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1330
Query: 996 FGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELN 1054
+G A+ LQEMLT KSD + R ++ I+ G PESF +LV+E+RSL L+++
Sbjct: 1331 YGAAYTLQEMLTVKSDDVNGRTKMY-ENIVKGEHKIDAGMPESFNVLVKEIRSLGLDID 1388
Score = 76.1 bits (184), Expect = 2e-12
Identities = 40/150 (26%), Positives = 80/150 (52%), Gaps = 10/150 (6%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNS 109
Y L EP + +TY++ L L+ + K ++E +++G IPLM
Sbjct: 77 YTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKEVRENEVYMGEIPLMTP 136
Query: 110 LGTSIVNGIYRIVINQILQSPGIYYQ---SELDHKGISVYTGTIISDWGGRLELEIDRKA 166
G+ ++NG R++++Q+ +SPG++++ + G +++ II G L+ E D K
Sbjct: 137 SGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKD 196
Query: 167 RIWARVSRKQKISILVLSSAMGSNLNEILE 196
++ R+ R++K+ + +L A+G N +IL+
Sbjct: 197 LLYFRIDRRRKMPVTILLKALGYNNEQILD 226
>dbj|BAA99392.1| (AB045725) RNA polymerase beta subunit [Shewanella violacea]
Length = 1343
Score = 414 bits (1053), Expect = e-114
Identities = 225/583 (38%), Positives = 354/583 (60%), Gaps = 15/583 (2%)
Query: 222 AILEFYRQFACVGGDPVFPESLCRELQKKFF-QQRCELGEIGRRNMNRRLNLDIPQNNTF 280
A++E YR G+P ++ Q FF ++R +L ++GR NRRL++ + +
Sbjct: 363 ALVEIYRMMR--PGEPPTKDAAEGLFQNLFFSEERYDLSKVGRMKFNRRLSIGEDEGSGI 420
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
L DI+ ++I ++ +DD++HL N+RIRSV ++ ++QF + LVR+E VR +
Sbjct: 421 LSKEDIVAVMKNIITIRNGGDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL 480
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
+L+P Q+L+ + P++ + FFG LSQ +D+ NPL+++ H R++S LGPGG
Sbjct: 481 SLGDLNELMP--QDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGG 538
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
LT A F +RD+H +HYGR+CPI+T EG N+GLI SLA AR +G +E+P+ ++ +
Sbjct: 539 LTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVEDG 598
Query: 461 SKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
+ YLS + Y+IA N G E+ V R++ + + + +
Sbjct: 599 VVTDQIDYLSAIEEGRYVIAQANIDIDKNGRLLEEQVACRHKGDSTFMRGTDIQYMDVSP 658
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q S+ ASLIPF+EH+DANRALM +NMQRQAVP +++K +VGTG+ER +A+DSG + +
Sbjct: 659 QQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERIIAVDSGVVVV 718
Query: 581 AEHEGKIIYKDTNKIVLFGSGETLS--------VPLVIYRRSNKNTCMHQKSQVQRGKCI 632
A+ G I Y D ++IV+ + L L Y RSN+NTC++Q+ G +
Sbjct: 719 AKRGGSIDYVDASRIVVKVNESELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGDPV 778
Query: 633 KRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYE 692
G +LADG +T G+L+ G+N+ +A+MPW GYN ED++LIS+R+ ED +T+ HI++
Sbjct: 779 VVGDVLADGPSTDLGDLAFGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELS 838
Query: 693 IQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSY 752
T G E IT IP++ L LD++G+V +G+ V+ GDILVGK+TP+ E+
Sbjct: 839 CIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPK--GETQL 896
Query: 753 APEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K++ L++P +G +IDV+ + G
Sbjct: 897 TPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDG 939
Score = 212 bits (535), Expect = 1e-53
Identities = 119/291 (40%), Positives = 165/291 (55%), Gaps = 44/291 (15%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR I+ GDK+AGRHGNKG++SKI +DMPY ++G P+D+V NPLGVPSRMN+
Sbjct: 1051 VKVYLAVKRTIQPGDKMAGRHGNKGVISKINPVEDMPYDENGNPIDIVLNPLGVPSRMNI 1110
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQ----------------- 906
GQI E +G A + +I E Q A + E+Y+
Sbjct: 1111 GQILEVHMGAAAKGIGD--QITAMLEEQRQLAEIRGYIKEVYELGDEVLQRVDIDSFTDD 1168
Query: 907 ----------------------ASKQTSNPWIFEPEYP--GKSRIFDGRTGTPFEQPVII 942
A ++ + + P G+ ++DGRTG FE+ V +
Sbjct: 1169 EVLRLAKNLKGGIPIATPAFDGAKEKEIKEMLALAKLPTSGQRTLYDGRTGNEFERKVTV 1228
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+ L
Sbjct: 1229 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1288
Query: 1003 QEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
QEMLT KSD + R ++ I+ G PESF +L++E+RSL + +
Sbjct: 1289 QEMLTVKSDDVNGRTQMY-KNIVDGNYQMQPGMPESFNVLLKEIRSLGINI 1338
Score = 86.2 bits (210), Expect = 2e-15
Identities = 57/202 (28%), Positives = 106/202 (52%), Gaps = 20/202 (9%)
Query: 12 LPGLNQIQFEGFCRFIDRGLT-----EELFK--FPKIEDTDQEIEFQLFVETYQLVEPSI 64
+P L IQ + F +F D+ T E F+ FP I+ E Q +Y+L EP
Sbjct: 24 IPYLLSIQLDSFKKFTDQDPTGERGFEAAFRSVFP-IKSFSGNSELQYV--SYKLGEPVF 80
Query: 65 KEKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNSLGTSIVNG 117
K+ +TY++ L V ++ + K+I+EQ +++G+IPLM + GT ++NG
Sbjct: 81 DVKECQIRGITYAAPLRVKLRMVLYDREAAPGTVKDIKEQEVYMGDIPLMTNNGTFVING 140
Query: 118 IYRIVINQILQSPGIYY---QSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSR 174
R++++Q+ +SPG+++ + + G +Y II G L+ E D K ++ R+ R
Sbjct: 141 TERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDALFVRIDR 200
Query: 175 KQKISILVLSSAMGSNLNEILE 196
++K+ ++ A+ + +IL+
Sbjct: 201 RRKLPASIMLRALDYSTQDILD 222
>prf||1606216A RNA polymerase beta [Pseudomonas putida]
Length = 1357
Score = 414 bits (1052), Expect = e-114
Identities = 228/583 (39%), Positives = 351/583 (60%), Gaps = 15/583 (2%)
Query: 222 AILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTF 280
A++E YR G+P ++ FF +R +L +GR NRR+ + +
Sbjct: 367 ALVEIYRMMR--PGEPPTKDAAETLFNNLFFSAERYDLSPLGRMKFNRRIGRTEIEGSGV 424
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
L DI+ L+ ++ G +DD++HL N+R+R V ++ ++QF + LVR+E V+ +
Sbjct: 425 LSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERL 484
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
A L+P Q+L+ + P+ + FFG LSQ +D+ NPL++I H R+ S LGPGG
Sbjct: 485 SMAESEGLMP--QDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRCSALGPGG 542
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
LT A F +RD+H +HYGR+CPI+T EG N+GLI SLA +AR ++G +ESP+ + E
Sbjct: 543 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEG 602
Query: 461 SKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
+++LS + ++IA + ++ +++V R+ EF A E V L +
Sbjct: 603 VVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDVSP 662
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q S+ ASLIPF+EH+DANRALM SNMQRQAVP +++K +VGTG+ER VA DSG +
Sbjct: 663 KQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVV 722
Query: 581 AEHEGKIIYKDTNKIVLFGSGETLSV--------PLVIYRRSNKNTCMHQKSQVQRGKCI 632
G I D ++IV+ + + + L Y RSN+NTC++Q+ V +G +
Sbjct: 723 RRRGGVIDSVDASRIVVRVADDEVETGERRVDIYNLTKYTRSNQNTCINQRPLVSKGDKV 782
Query: 633 KRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYE 692
+RG I+AD A+T GEL+LG+N+ +A+M W G+N ED++ +S+R+V ED +T+ HI++
Sbjct: 783 QRGDIMADRASTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELT 842
Query: 693 IQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSY 752
GP IT+ IP++ L LD+ G+V +G+ V AGDILVGK+TP+ +
Sbjct: 843 CVARDNKLGPREITSGIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPK--GHTQL 900
Query: 753 APEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K+T L++P G +G VIDV+ + G
Sbjct: 901 TPEEKLLRAIFGEKASDVKDTSLRVPTGTQGTVIDVQVFTRDG 943
Score = 211 bits (531), Expect = 4e-53
Identities = 129/319 (40%), Positives = 180/319 (55%), Gaps = 49/319 (15%)
Query: 782 RGRVIDVRWLHKKG----GSGYNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKIL 834
R R++D ++ KK G P + + +Y+ +R I+ GDK+AGRHGNKG+VS I+
Sbjct: 1038 RRRLLDDKFEDKKRNVQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIM 1097
Query: 835 ARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQE 894
+DMP+ +G PVD+V NPLGVPSRMNVGQI E LGLA L +I E +
Sbjct: 1098 PVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKGLGE--KIDRMLEEQRKA 1155
Query: 895 ASRKLVFSELYQ-------------------------------------ASKQTSNPWIF 917
A ++ +E+Y A ++ +
Sbjct: 1156 AELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVPMATPVFDGAKEREIKAMLK 1215
Query: 918 EPEYP--GKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLK 975
+ P G+ +FDGRT FE+PV +G Y+LKL H VDDK+H RS+G Y+LVTQQPL
Sbjct: 1216 LADLPESGQMVLFDGRTRNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1275
Query: 976 GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDA 1035
G A+ GGQR GEMEVWALE +G A+ LQEMLT KSD + R ++ + G +P A
Sbjct: 1276 GLAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMA 1335
Query: 1036 PESFRLLVRELRSLALELN 1054
ESF +L++E+RSL ++++
Sbjct: 1336 -ESFNVLIKEIRSLGIDID 1353
Score = 87.4 bits (213), Expect = 8e-16
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIW-------KNSKNIQEQTIFIGNIPLMNS 109
Y+L EP+ K+ V +T++ L V LI K K+I+EQ +++G IPLM
Sbjct: 77 YRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTE 136
Query: 110 LGTSIVNGIYRIVINQILQSPGIYY---QSELDHKGISVYTGTIISDWGGRLELEIDRKA 166
GT ++NG R++++Q+ +SPG+++ + + G +Y+ II G L+ E D K
Sbjct: 137 NGTFVINGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKD 196
Query: 167 RIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIF 204
++ R+ R++K+ VL A+G + E+L +F
Sbjct: 197 CVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVF 234
>sp|P19175|RPOB_PSEPU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
emb|CAA33846.1| (X15849) beta-subunit of RNA polymerase [Pseudomonas putida]
Length = 1357
Score = 414 bits (1052), Expect = e-114
Identities = 228/583 (39%), Positives = 351/583 (60%), Gaps = 15/583 (2%)
Query: 222 AILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTF 280
A++E YR G+P ++ FF +R +L +GR NRR+ + +
Sbjct: 367 ALVEIYRMMR--PGEPPTKDAAETLFNNLFFSAERYDLSPLGRMKFNRRIGRTEIEGSGV 424
Query: 281 LLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
L DI+ L+ ++ G +DD++HL N+R+R V ++ ++QF + LVR+E V+ +
Sbjct: 425 LSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERL 484
Query: 341 CGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
A L+P Q+L+ + P+ + FFG LSQ +D+ NPL++I H R+ S LGPGG
Sbjct: 485 SMAESEGLMP--QDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRCSALGPGG 542
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISER 460
LT A F +RD+H +HYGR+CPI+T EG N+GLI SLA +AR ++G +ESP+ + E
Sbjct: 543 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEG 602
Query: 461 SKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
+++LS + ++IA + ++ +++V R+ EF A E V L +
Sbjct: 603 VVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDVSP 662
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q S+ ASLIPF+EH+DANRALM SNMQRQAVP +++K +VGTG+ER VA DSG +
Sbjct: 663 KQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVV 722
Query: 581 AEHEGKIIYKDTNKIVLFGSGETLSV--------PLVIYRRSNKNTCMHQKSQVQRGKCI 632
G I D ++IV+ + + + L Y RSN+NTC++Q+ V +G +
Sbjct: 723 RRRGGVIDSVDASRIVVRVADDEVETGERRVDIYNLTKYTRSNQNTCINQRPLVSKGDKV 782
Query: 633 KRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYE 692
+RG I+AD A+T GEL+LG+N+ +A+M W G+N ED++ +S+R+V ED +T+ HI++
Sbjct: 783 QRGDIMADRASTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQELT 842
Query: 693 IQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSY 752
GP IT+ IP++ L LD+ G+V +G+ V AGDILVGK+TP+ +
Sbjct: 843 CVARDNKLGPREITSGIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPK--GHTQL 900
Query: 753 APEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
PE++LLRAI G + S K+T L++P G +G VIDV+ + G
Sbjct: 901 TPEEKLLRAIFGEKASDVKDTSLRVPTGTQGTVIDVQVFTRDG 943
Score = 212 bits (535), Expect = 1e-53
Identities = 129/319 (40%), Positives = 181/319 (56%), Gaps = 49/319 (15%)
Query: 782 RGRVIDVRWLHKKG----GSGYNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKIL 834
R R++D ++ KK G P + + +Y+ +R I+ GDK+AGRHGNKG+VS I+
Sbjct: 1038 RRRLLDDKFEDKKRNVQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIM 1097
Query: 835 ARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQE 894
+DMP+ +G PVD+V NPLGVPSRMNVGQI E LGLA L +I E +
Sbjct: 1098 PVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKGLGE--KIDRMLEEQRKA 1155
Query: 895 ASRKLVFSELYQ-------------------------------------ASKQTSNPWIF 917
A ++ +E+Y A ++ +
Sbjct: 1156 AELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVPMATPVFDGAKEREIKAMLK 1215
Query: 918 EPEYP--GKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLK 975
+ P G+ +FDGRT FE+PV +G Y+LKL H VDDK+H RS+G Y+LVTQQPL
Sbjct: 1216 LADLPESGQMVLFDGRTRNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1275
Query: 976 GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDA 1035
G+A+ GGQR GEMEVWALE +G A+ LQEMLT KSD + R ++ + G +P A
Sbjct: 1276 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMA 1335
Query: 1036 PESFRLLVRELRSLALELN 1054
ESF +L++E+RSL ++++
Sbjct: 1336 -ESFNVLIKEIRSLGIDID 1353
Score = 87.4 bits (213), Expect = 8e-16
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 10/158 (6%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIW-------KNSKNIQEQTIFIGNIPLMNS 109
Y+L EP+ K+ V +T++ L V LI K K+I+EQ +++G IPLM
Sbjct: 77 YRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEIPLMTE 136
Query: 110 LGTSIVNGIYRIVINQILQSPGIYY---QSELDHKGISVYTGTIISDWGGRLELEIDRKA 166
GT ++NG R++++Q+ +SPG+++ + + G +Y+ II G L+ E D K
Sbjct: 137 NGTFVINGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKD 196
Query: 167 RIWARVSRKQKISILVLSSAMGSNLNEILENVCYPEIF 204
++ R+ R++K+ VL A+G + E+L +F
Sbjct: 197 CVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVF 234
>sp|P56869|RPOB_CHLMU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||G81686 DNA-directed RNA polymerase, beta chain TC0589 [imported] -
Chlamydia muridarum (strain Nigg)
gb|AAF39421.1| (AE002327) DNA-directed RNA polymerase, beta subunit [Chlamydia
muridarum]
Length = 1252
Score = 412 bits (1048), Expect = e-113
Identities = 238/610 (39%), Positives = 358/610 (58%), Gaps = 22/610 (3%)
Query: 218 SKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQ 276
S E+A+ +FYR+ G+P + + + FF +R LG +GR +N++L +
Sbjct: 296 SYEAALKDFYRRLR--PGEPATLANARSTIMRLFFDSKRYNLGRVGRYKLNKKLGFPLDD 353
Query: 277 ---NNTFLLPRDILTAADHLIGMKFRMG----TLDDMNHLKNKRIRSVADLLQDQFGLAL 329
+ L D++ A +LI + RMG ++DD++HL N+R+RSV +L+Q+ L
Sbjct: 354 ETLSQVTLRKEDVIGALKYLI--RLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGL 411
Query: 330 VRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVH 389
R+E +VR + TP ++++ L + + FF LSQ +D+TNP+ ++ H
Sbjct: 412 ARMEKIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTH 471
Query: 390 GRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGS 449
R+LS LGPGGL A F +RD+HSSHYGRICPI+T EG N+GLI SL+ A+I +G
Sbjct: 472 KRRLSALGPGGLNRERAGFEVRDVHSSHYGRICPIETPEGPNIGLITSLSSFAKINEFGF 531
Query: 450 IESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIA 509
IE+P+ + + + Y++ +E +IA + ++ + ARY+ E
Sbjct: 532 IETPYRVVRDGIVTDEIEYMTADVEEDCVIAQASAELDEYNMFKDSVCWARYKGEAFEAD 591
Query: 510 WEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLER 569
V + Q S+ LIPF+EH+DANRALM SNMQRQAVPL ++E IVGTGLE
Sbjct: 592 TSTVTHMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEG 651
Query: 570 QVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETL---SVPLVIYRRSNKNTCMHQKSQV 626
+ A DSG + +A+ +G + Y D+ +IV+ + PL + RSN TC++Q
Sbjct: 652 RAAKDSGAIVVAQEDGVVEYVDSYEIVVAKKNNPTLKDTYPLKKFLRSNSGTCINQTPLC 711
Query: 627 QRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSF 686
G + G +LADG AT GEL+LGKNVLVA+MPW GYN EDA++IS++L+ +D YTS
Sbjct: 712 SVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISEKLIKQDAYTSI 771
Query: 687 HIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQM 746
+I ++E+ T G E IT IP++ +L NL ++G+V +G+ V+ GDILVGK+TP+
Sbjct: 772 YIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGIVRIGAEVKPGDILVGKITPK- 830
Query: 747 AKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYN-----P 801
E+ APE+RLLRAI G + + K+ L +P G G V+DV+ +K +
Sbjct: 831 -SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVE 889
Query: 802 ETIHIYILQK 811
E +H+ LQK
Sbjct: 890 EAVHLKDLQK 899
Score = 226 bits (571), Expect = 9e-58
Identities = 116/255 (45%), Positives = 162/255 (63%), Gaps = 16/255 (6%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR+++VGDK+AGRHGNKG+VSKI+ DMP+L +G V M+ NPLGVPSRMN+
Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNL 1071
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPG 923
GQ+ E LG A + + F+ E ++ L PE G
Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQGL--------------PE-DG 1116
Query: 924 KSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQ 983
KS +FDG+TG F+ V++G Y+LKL H + DKIH RS G Y+LVTQQPL G+A+ GGQ
Sbjct: 1117 KSYLFDGKTGERFDSKVVVGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQ 1176
Query: 984 RVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLV 1043
R GEMEVWALE +GVAH+LQE+LT KSD + R + + + G + + PESF +L+
Sbjct: 1177 RFGEMEVWALEAYGVAHMLQEILTVKSDDVSGRTRIYESIVKGENLLRS-GTPESFNVLI 1235
Query: 1044 RELRSLALELNHFLV 1058
+E++ L L++ +V
Sbjct: 1236 KEMQGLGLDVRPMVV 1250
Score = 77.6 bits (188), Expect = 7e-13
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 13/193 (6%)
Query: 7 EGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEI-EFQLFVE-------TYQ 58
E + LP L ++Q + + +F+ G E + +E+ +EI + + E +Y
Sbjct: 14 EDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEATILEYLSYN 73
Query: 59 LVEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGI 118
L P ++ + +TYS L V L + I+E+ +++G IP+M GT I+NG
Sbjct: 74 LGVPKYSPEECIRRGITYSVTLKVRFRLT--DETGIKEEEVYMGTIPIMTDKGTFIINGA 131
Query: 119 YRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK--- 175
R+V++Q+ +SPGI ++ E KG +++ II G LE D I+ + RK
Sbjct: 132 ERVVVSQVHRSPGINFEQEKHSKGNVLFSFRIIPYRGSWLEASFDINDLIYIHIDRKKRR 191
Query: 176 QKISILVLSSAMG 188
+KI + A+G
Sbjct: 192 RKILAMTFIRALG 204
>pir||E82533 RNA polymerase beta subunit XF2633 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF85430.1|AE004070_2 (AE004070) RNA polymerase beta subunit [Xylella fastidiosa]
Length = 1388
Score = 411 bits (1045), Expect = e-113
Identities = 238/606 (39%), Positives = 343/606 (56%), Gaps = 38/606 (6%)
Query: 222 AILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTF 280
A +E YR G+P E+ FF R +L +GR NRR+
Sbjct: 372 AQVEIYRMMR--PGEPPTKEAAQNLFHNLFFTFDRYDLSMVGRMKFNRRVGRKEVAGEPV 429
Query: 281 LLPR----------------------DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVA 318
L + DIL L ++ G +DD++HL N+R+RSV
Sbjct: 430 LYDKKYFSDRNDEESRRLVSKLGETSDILDVIKGLCEIRNGRGVVDDIDHLGNRRVRSVG 489
Query: 319 DLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVL 378
++ ++ F + LVR+E V+ + A L TPQ L+ + P+ + FFG LSQ +
Sbjct: 490 EMAENVFRVGLVRVERAVKERLSMAESEGL--TPQELINAKPVAAAIKEFFGSSQLSQFM 547
Query: 379 DRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSL 438
D+ NPL+++ H R+LS LGPGGLT A F +RD+H SHYG +C I+T EG N+GLI SL
Sbjct: 548 DQNNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIGLINSL 607
Query: 439 AIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVP 498
A+ AR ++G +E+P+ ++ E + YLS + Y+IA N L + G E VP
Sbjct: 608 AVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQANTLTDDNGQLTESFVP 667
Query: 499 ARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQS 558
R++ E L VH + Q S+ A+L+PF+EH+DANRALM +NMQRQAVP ++
Sbjct: 668 CRFQGESLLKPPSYVHYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTLRA 727
Query: 559 EKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL-FGSGETLSVP--------LV 609
+K +VGTG+ER VA DSG A G I D +IV+ E + L+
Sbjct: 728 QKPLVGTGIERTVARDSGVTVNARRGGVIDQVDAGRIVVKVNESEIIGATDAGVDIYGLI 787
Query: 610 IYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSED 669
Y RSN+NTC++Q+ V G + G +LADG +T GEL+LG+N+L+A+MPW GYN ED
Sbjct: 788 KYTRSNQNTCINQRPLVNVGDIVTSGDVLADGPSTDIGELALGQNMLIAFMPWNGYNFED 847
Query: 670 AVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILG 729
++L+S+R+V ED YT+ HI + T G E I+ IP++ L LD++G+V +G
Sbjct: 848 SILLSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNRLDESGVVYIG 907
Query: 730 SWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVR 789
+ V AGDILVGK+TP+ ES PE++LLRAI G + S K++ L++P G G VIDV+
Sbjct: 908 AEVRAGDILVGKVTPK--GESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQ 965
Query: 790 WLHKKG 795
+ G
Sbjct: 966 VFTRDG 971
Score = 216 bits (544), Expect = 1e-54
Identities = 122/292 (41%), Positives = 169/292 (57%), Gaps = 45/292 (15%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +++ KR I+ GDK+AGRHGNKG+VS ++ +DMP+++DG PVD+V NPLGVPSRMN+
Sbjct: 1095 VKVFLAVKRCIQPGDKMAGRHGNKGVVSNVVPVEDMPFMEDGTPVDIVLNPLGVPSRMNI 1154
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQ----------------- 906
GQI E LG A L +RI E A + +E+Y
Sbjct: 1155 GQILEVHLGWAAKGLG--HRIQRMLEANAAIADLRKFLNEIYNHDKSVVGERVDLSQFSD 1212
Query: 907 -----------------------ASKQTSNPWIFEPEYP--GKSRIFDGRTGTPFEQPVI 941
AS+Q + E P G+++++DG TG PF++
Sbjct: 1213 DELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAELPTGGQTQLYDGHTGEPFDRKTT 1272
Query: 942 IGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHI 1001
+G + LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +G A+
Sbjct: 1273 VGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1332
Query: 1002 LQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
LQEMLT KSD ++ R ++ I+ G PESF +LV+E+RSLA+ +
Sbjct: 1333 LQEMLTVKSDDVQGRNQMY-KNIVDGDHQMVAGMPESFNVLVKEIRSLAINI 1383
Score = 87.4 bits (213), Expect = 8e-16
Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 10/149 (6%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLI-------WKNSKNIQEQTIFIGNIPLMNS 109
Y+L EP E++ ++Y + L V+ L+ K K I+EQ +++G IPLM
Sbjct: 82 YKLGEPMFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAVKYIKEQEVYLGEIPLMTE 141
Query: 110 LGTSIVNGIYRIVINQILQSPGIYY---QSELDHKGISVYTGTIISDWGGRLELEIDRKA 166
GT IVNG R++++Q+ +SPG+++ + + G +Y+ II G L+ E D K
Sbjct: 142 NGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPCRGSWLDFEFDPKD 201
Query: 167 RIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ R+ R++K+ + +L A+G + EIL
Sbjct: 202 ALFTRIDRRRKLPVSILLRALGYSNEEIL 230
>dbj|BAA98291.1| (AP002545) RNA polymerase beta [Chlamydophila pneumoniae J138]
Length = 1252
Score = 411 bits (1044), Expect = e-113
Identities = 241/609 (39%), Positives = 359/609 (58%), Gaps = 20/609 (3%)
Query: 218 SKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQ 276
S E+A+ +FYR+ G+P + + + FF +R LG +GR +NR+L I
Sbjct: 296 SYEAALKDFYRRLR--PGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFSIDD 353
Query: 277 ---NNTFLLPRDILTAADHLIGMKF--RMGTLDDMNHLKNKRIRSVADLLQDQFGLALVR 331
+ L D++ A +LI +K +DD++HL N+R+RSV +L+Q+Q L R
Sbjct: 354 EALSQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDHLANRRVRSVGELIQNQCRSGLAR 413
Query: 332 LENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGR 391
+E +VR + TP +V++ L + + FFG LSQ +D+TNP+ ++ H R
Sbjct: 414 MEKIVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKR 473
Query: 392 KLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIE 451
+LS LGPGGL A F +RD+H+SHYGRICPI+T EG N+GLI SL+ A+I +G IE
Sbjct: 474 RLSALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIE 533
Query: 452 SPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ-EEQIVPARYRQEFLTIAW 510
+P+ + + + Y++ +E +IA + +L++ N E + RY E
Sbjct: 534 TPYRIVRDGIVTDEIEYMTADVEEECVIAQAS-ASLDEYNMFTEPVCWVRYAGEAFEADT 592
Query: 511 EQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQ 570
V + Q SI LIPF+EH+DANRALM SNMQRQAVPL ++E +VGTGLE +
Sbjct: 593 STVTHMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPVVGTGLECR 652
Query: 571 VALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETL---SVPLVIYRRSNKNTCMHQKSQVQ 627
A DSG + +AE +G + + D K+V+ + L + RSN TC++Q+
Sbjct: 653 AAKDSGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIKRTYHLKKFLRSNSGTCINQQPLCA 712
Query: 628 RGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFH 687
G I +G ++ADG AT GEL+LGKNVLVA+MPW GYN EDA++IS++L+ ED YTS +
Sbjct: 713 VGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIREDAYTSIY 772
Query: 688 IRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMA 747
I ++E+ T G E IT IP++ +L NL ++G++ +G+ V+ GDILVGK+TP+
Sbjct: 773 IEEFELTARDTKLGKEEITRDIPNVSDEVLANLGEDGIIRIGAEVKPGDILVGKITPK-- 830
Query: 748 KESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYN-----PE 802
E+ APE+RLLRAI G + + K+ L +P G G V+DV+ +K + E
Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890
Query: 803 TIHIYILQK 811
+H+ LQK
Sbjct: 891 AVHLKDLQK 899
Score = 229 bits (578), Expect = 1e-58
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 16/255 (6%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR+++VGDK+AGRHGNKG+VSKI+ DMPYL +G V M+ NPLGVPSRMN+
Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1071
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPG 923
GQ+ E LG A + + F+ EQ ++ L PE G
Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGL--------------PE-DG 1116
Query: 924 KSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQ 983
KS ++DG+TG F+ V+IG Y+LKL H + DKIH RS G Y+LVTQQPL G+A+ GGQ
Sbjct: 1117 KSFLYDGKTGERFDNKVVIGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQ 1176
Query: 984 RVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLV 1043
R GEMEVWALE +GVAH+LQE+LT KSD + R + + + G + + PESF +L+
Sbjct: 1177 RFGEMEVWALEAYGVAHMLQEILTVKSDDVSGRTRIYESIVKGENLLRS-GTPESFNVLI 1235
Query: 1044 RELRSLALELNHFLV 1058
+E++ L L++ +V
Sbjct: 1236 KEMQGLGLDVRPMVV 1250
Score = 78.0 bits (189), Expect = 5e-13
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 13/193 (6%)
Query: 7 EGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEI--------EFQLFVETYQ 58
E + LP L +IQ + + +F+ G E + +E+ +EI L +Y
Sbjct: 14 EDIPDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEATVLEYLSYN 73
Query: 59 LVEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGI 118
L P ++ + +TYS L V L + I+E+ +++G IPLM GT I+NG
Sbjct: 74 LGVPKYSPEECIRRGITYSVTLKVRFRLT--DETGIKEEEVYMGTIPLMTDKGTFIINGA 131
Query: 119 YRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK--- 175
R+V++Q+ +SPGI ++ E KG +++ II G LE D I+ + RK
Sbjct: 132 ERVVVSQVHRSPGINFEQEKHSKGNILFSFRIIPYRGSWLEAIFDINDLIYIHIDRKKRR 191
Query: 176 QKISILVLSSAMG 188
+KI + A+G
Sbjct: 192 RKILAITFIRALG 204
>pir||F81548 DNA-directed RNA polymerase, beta chain CP0694 [imported] -
Chlamydophila pneumoniae (strain AR39)
gb|AAF38502.1| (AE002228) DNA-directed RNA polymerase, beta subunit [Chlamydophila
pneumoniae AR39]
Length = 1262
Score = 411 bits (1044), Expect = e-113
Identities = 241/609 (39%), Positives = 359/609 (58%), Gaps = 20/609 (3%)
Query: 218 SKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQ 276
S E+A+ +FYR+ G+P + + + FF +R LG +GR +NR+L I
Sbjct: 306 SYEAALKDFYRRLR--PGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFSIDD 363
Query: 277 ---NNTFLLPRDILTAADHLIGMKF--RMGTLDDMNHLKNKRIRSVADLLQDQFGLALVR 331
+ L D++ A +LI +K +DD++HL N+R+RSV +L+Q+Q L R
Sbjct: 364 EALSQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDHLANRRVRSVGELIQNQCRSGLAR 423
Query: 332 LENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGR 391
+E +VR + TP +V++ L + + FFG LSQ +D+TNP+ ++ H R
Sbjct: 424 MEKIVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKR 483
Query: 392 KLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIE 451
+LS LGPGGL A F +RD+H+SHYGRICPI+T EG N+GLI SL+ A+I +G IE
Sbjct: 484 RLSALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIE 543
Query: 452 SPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ-EEQIVPARYRQEFLTIAW 510
+P+ + + + Y++ +E +IA + +L++ N E + RY E
Sbjct: 544 TPYRIVRDGIVTDEIEYMTADVEEECVIAQAS-ASLDEYNMFTEPVCWVRYAGEAFEADT 602
Query: 511 EQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQ 570
V + Q SI LIPF+EH+DANRALM SNMQRQAVPL ++E +VGTGLE +
Sbjct: 603 STVTHMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPVVGTGLECR 662
Query: 571 VALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETL---SVPLVIYRRSNKNTCMHQKSQVQ 627
A DSG + +AE +G + + D K+V+ + L + RSN TC++Q+
Sbjct: 663 AAKDSGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIKRTYHLKKFLRSNSGTCINQQPLCA 722
Query: 628 RGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFH 687
G I +G ++ADG AT GEL+LGKNVLVA+MPW GYN EDA++IS++L+ ED YTS +
Sbjct: 723 VGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIREDAYTSIY 782
Query: 688 IRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMA 747
I ++E+ T G E IT IP++ +L NL ++G++ +G+ V+ GDILVGK+TP+
Sbjct: 783 IEEFELTARDTKLGKEEITRDIPNVSDEVLANLGEDGIIRIGAEVKPGDILVGKITPK-- 840
Query: 748 KESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYN-----PE 802
E+ APE+RLLRAI G + + K+ L +P G G V+DV+ +K + E
Sbjct: 841 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 900
Query: 803 TIHIYILQK 811
+H+ LQK
Sbjct: 901 AVHLKDLQK 909
Score = 229 bits (578), Expect = 1e-58
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 16/255 (6%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR+++VGDK+AGRHGNKG+VSKI+ DMPYL +G V M+ NPLGVPSRMN+
Sbjct: 1022 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1081
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPG 923
GQ+ E LG A + + F+ EQ ++ L PE G
Sbjct: 1082 GQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGL--------------PE-DG 1126
Query: 924 KSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQ 983
KS ++DG+TG F+ V+IG Y+LKL H + DKIH RS G Y+LVTQQPL G+A+ GGQ
Sbjct: 1127 KSFLYDGKTGERFDNKVVIGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQ 1186
Query: 984 RVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLV 1043
R GEMEVWALE +GVAH+LQE+LT KSD + R + + + G + + PESF +L+
Sbjct: 1187 RFGEMEVWALEAYGVAHMLQEILTVKSDDVSGRTRIYESIVKGENLLRS-GTPESFNVLI 1245
Query: 1044 RELRSLALELNHFLV 1058
+E++ L L++ +V
Sbjct: 1246 KEMQGLGLDVRPMVV 1260
Score = 78.0 bits (189), Expect = 5e-13
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 13/193 (6%)
Query: 7 EGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEI--------EFQLFVETYQ 58
E + LP L +IQ + + +F+ G E + +E+ +EI L +Y
Sbjct: 24 EDIPDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEATVLEYLSYN 83
Query: 59 LVEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGI 118
L P ++ + +TYS L V L + I+E+ +++G IPLM GT I+NG
Sbjct: 84 LGVPKYSPEECIRRGITYSVTLKVRFRLT--DETGIKEEEVYMGTIPLMTDKGTFIINGA 141
Query: 119 YRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK--- 175
R+V++Q+ +SPGI ++ E KG +++ II G LE D I+ + RK
Sbjct: 142 ERVVVSQVHRSPGINFEQEKHSKGNILFSFRIIPYRGSWLEAIFDINDLIYIHIDRKKRR 201
Query: 176 QKISILVLSSAMG 188
+KI + A+G
Sbjct: 202 RKILAITFIRALG 214
>sp|Q9Z9A0|RPOB_CHLPN DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||D72122 RNA polymerase beta - Chlamydophila pneumoniae (strain CWL029)
gb|AAD18234.1| (AE001593) RNA Polymerase Beta [Chlamydophila pneumoniae CWL029]
Length = 1252
Score = 411 bits (1044), Expect = e-113
Identities = 241/609 (39%), Positives = 359/609 (58%), Gaps = 20/609 (3%)
Query: 218 SKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQ 276
S E+A+ +FYR+ G+P + + + FF +R LG +GR +NR+L I
Sbjct: 296 SYEAALKDFYRRLR--PGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFSIDD 353
Query: 277 ---NNTFLLPRDILTAADHLIGMKF--RMGTLDDMNHLKNKRIRSVADLLQDQFGLALVR 331
+ L D++ A +LI +K +DD++HL N+R+RSV +L+Q+Q L R
Sbjct: 354 EALSQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDHLANRRVRSVGELIQNQCRSGLAR 413
Query: 332 LENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGR 391
+E +VR + TP +V++ L + + FFG LSQ +D+TNP+ ++ H R
Sbjct: 414 MEKIVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKR 473
Query: 392 KLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIE 451
+LS LGPGGL A F +RD+H+SHYGRICPI+T EG N+GLI SL+ A+I +G IE
Sbjct: 474 RLSALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIE 533
Query: 452 SPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ-EEQIVPARYRQEFLTIAW 510
+P+ + + + Y++ +E +IA + +L++ N E + RY E
Sbjct: 534 TPYRIVRDGIVTDEIEYMTADVEEECVIAQAS-ASLDEYNMFTEPVCWVRYAGEAFEADT 592
Query: 511 EQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQ 570
V + Q SI LIPF+EH+DANRALM SNMQRQAVPL ++E +VGTGLE +
Sbjct: 593 STVTHMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPVVGTGLECR 652
Query: 571 VALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETL---SVPLVIYRRSNKNTCMHQKSQVQ 627
A DSG + +AE +G + + D K+V+ + L + RSN TC++Q+
Sbjct: 653 AAKDSGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIKRTYHLKKFLRSNSGTCINQQPLCA 712
Query: 628 RGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFH 687
G I +G ++ADG AT GEL+LGKNVLVA+MPW GYN EDA++IS++L+ ED YTS +
Sbjct: 713 VGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIREDAYTSIY 772
Query: 688 IRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMA 747
I ++E+ T G E IT IP++ +L NL ++G++ +G+ V+ GDILVGK+TP+
Sbjct: 773 IEEFELTARDTKLGKEEITRDIPNVSDEVLANLGEDGIIRIGAEVKPGDILVGKITPK-- 830
Query: 748 KESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYN-----PE 802
E+ APE+RLLRAI G + + K+ L +P G G V+DV+ +K + E
Sbjct: 831 SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEE 890
Query: 803 TIHIYILQK 811
+H+ LQK
Sbjct: 891 AVHLKDLQK 899
Score = 229 bits (578), Expect = 1e-58
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 16/255 (6%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR+++VGDK+AGRHGNKG+VSKI+ DMPYL +G V M+ NPLGVPSRMN+
Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1071
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPG 923
GQ+ E LG A + + F+ EQ ++ L PE G
Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGL--------------PE-DG 1116
Query: 924 KSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQ 983
KS ++DG+TG F+ V+IG Y+LKL H + DKIH RS G Y+LVTQQPL G+A+ GGQ
Sbjct: 1117 KSFLYDGKTGERFDNKVVIGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQ 1176
Query: 984 RVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLV 1043
R GEMEVWALE +GVAH+LQE+LT KSD + R + + + G + + PESF +L+
Sbjct: 1177 RFGEMEVWALEAYGVAHMLQEILTVKSDDVSGRTRIYESIVKGENLLRS-GTPESFNVLI 1235
Query: 1044 RELRSLALELNHFLV 1058
+E++ L L++ +V
Sbjct: 1236 KEMQGLGLDVRPMVV 1250
Score = 78.0 bits (189), Expect = 5e-13
Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 13/193 (6%)
Query: 7 EGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEI--------EFQLFVETYQ 58
E + LP L +IQ + + +F+ G E + +E+ +EI L +Y
Sbjct: 14 EDIPDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEATVLEYLSYN 73
Query: 59 LVEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGI 118
L P ++ + +TYS L V L + I+E+ +++G IPLM GT I+NG
Sbjct: 74 LGVPKYSPEECIRRGITYSVTLKVRFRLT--DETGIKEEEVYMGTIPLMTDKGTFIINGA 131
Query: 119 YRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK--- 175
R+V++Q+ +SPGI ++ E KG +++ II G LE D I+ + RK
Sbjct: 132 ERVVVSQVHRSPGINFEQEKHSKGNILFSFRIIPYRGSWLEAIFDINDLIYIHIDRKKRR 191
Query: 176 QKISILVLSSAMG 188
+KI + A+G
Sbjct: 192 RKILAITFIRALG 204
>sp|O84317|RPOB_CHLTR DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||H71529 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Chlamydia
trachomatis (serotype D, strain UW3/Cx)
gb|AAC67908.1| (AE001304) RNA Polymerase Beta [Chlamydia trachomatis]
Length = 1252
Score = 406 bits (1032), Expect = e-112
Identities = 239/610 (39%), Positives = 357/610 (58%), Gaps = 22/610 (3%)
Query: 218 SKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQ 276
S E+A+ +FYR+ G+P + + + FF +R LG +GR +N++L +
Sbjct: 296 SYEAALKDFYRRLR--PGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDD 353
Query: 277 ---NNTFLLPRDILTAADHLIGMKFRMG----TLDDMNHLKNKRIRSVADLLQDQFGLAL 329
+ L D++ A +LI + RMG ++DD++HL N+R+RSV +L+Q+ L
Sbjct: 354 ETLSQVTLRKEDVIGALKYLI--RLRMGDEKTSIDDIDHLANRRVRSVGELIQNHCRSGL 411
Query: 330 VRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVH 389
R+E +VR + TP ++++ L + + FF LSQ +D+TNP+ ++ H
Sbjct: 412 ARMEKIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTH 471
Query: 390 GRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGS 449
R+LS LGPGGL A F +RD+H+SHYGRICPI+T EG N+GLI SL+ A+I +G
Sbjct: 472 KRRLSALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGF 531
Query: 450 IESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIA 509
IE+P+ + + + Y++ +E +IA + + + ARY+ E
Sbjct: 532 IETPYRVVRDGIVTDEIEYMTADVEEECVIAQASAELDEYDMFKTPVCWARYKGEAFEAD 591
Query: 510 WEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLER 569
V + Q S+ LIPF+EH+DANRALM SNMQRQAVPL ++E IVGTGLE
Sbjct: 592 TSTVTHMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLEG 651
Query: 570 QVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGE-TLS--VPLVIYRRSNKNTCMHQKSQV 626
+ A DSG + +A+ +G + Y D+ +IV+ TL L + RSN TC++Q
Sbjct: 652 RAAKDSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLKDRYQLKKFLRSNSGTCINQTPLC 711
Query: 627 QRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSF 686
G + G +LADG AT GEL+LGKNVLVA+MPW GYN EDA++IS+RL+ +D YTS
Sbjct: 712 SVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTSI 771
Query: 687 HIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQM 746
+I ++E+ T G E IT IP++ +L NL ++G+V +G+ V+ GDILVGK+TP+
Sbjct: 772 YIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGVVRIGAEVKPGDILVGKITPK- 830
Query: 747 AKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYN-----P 801
E+ APE+RLLRAI G + + K+ L +P G G V+DV+ +K +
Sbjct: 831 -SETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVE 889
Query: 802 ETIHIYILQK 811
E +H+ LQK
Sbjct: 890 EAVHLKDLQK 899
Score = 226 bits (571), Expect = 9e-58
Identities = 116/255 (45%), Positives = 162/255 (63%), Gaps = 16/255 (6%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +Y+ KR+++VGDK+AGRHGNKG+VSKI+ DMP+L +G V M+ NPLGVPSRMN+
Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNL 1071
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPG 923
GQ+ E LG A + + F+ E ++ L PE G
Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQGL--------------PE-DG 1116
Query: 924 KSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQ 983
KS +FDG+TG F+ V++G Y+LKL H + DKIH RS G Y+LVTQQPL G+A+ GGQ
Sbjct: 1117 KSYLFDGKTGERFDSKVVVGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQ 1176
Query: 984 RVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLV 1043
R GEMEVWALE +GVAH+LQE+LT KSD + R + + + G + + PESF +L+
Sbjct: 1177 RFGEMEVWALEAYGVAHMLQEILTVKSDDVSGRTRIYESIVKGENLLRS-GTPESFNVLI 1235
Query: 1044 RELRSLALELNHFLV 1058
+E++ L L++ +V
Sbjct: 1236 KEMQGLGLDVRPMVV 1250
Score = 76.9 bits (186), Expect = 1e-12
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 13/193 (6%)
Query: 7 EGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEI-EFQLFVE-------TYQ 58
E + LP L ++Q + + +F+ G E + +E+ +EI + + E +Y
Sbjct: 14 EDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEATILEYLSYN 73
Query: 59 LVEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGI 118
L P ++ + +TYS L V L + I+E+ +++G IP+M GT I+NG
Sbjct: 74 LGVPKYSPEECIRRGITYSVTLKVRFRLT--DETGIKEEEVYMGTIPIMTDKGTFIINGA 131
Query: 119 YRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK--- 175
R+V++Q+ +SPGI ++ E KG +++ II G LE D I+ + RK
Sbjct: 132 ERVVVSQVHRSPGINFEQEKHSKGNVLFSFRIIPYRGSWLEAVFDINDLIYIHIDRKKRR 191
Query: 176 QKISILVLSSAMG 188
+KI + A+G
Sbjct: 192 RKILAMTFIRALG 204
>emb|CAA52957.1| (X75046) DNA dependent RNA polymerase [Aquifex pyrophilus]
Length = 1469
Score = 400 bits (1018), Expect = e-110
Identities = 216/528 (40%), Positives = 332/528 (61%), Gaps = 14/528 (2%)
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
FLLP D++ +LI ++ DD+ HL N+R+RSV +LL++Q L + ++E + R
Sbjct: 499 FLLPIDLINILKYLIDLRHGRVKKDDIAHLGNRRVRSVGELLENQARLGIAKMEKVFRDR 558
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ PQ+ + +T F LSQ LD TNPL+++ H R+LS LGPG
Sbjct: 559 SATIHPEQPDLKPQDFINPRYVTNAIADFLKTGQLSQYLDNTNPLSELTHKRRLSALGPG 618
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT +A F IRD+H SHYGRICPI+T EG N+GL+ S ++AR+ +G + +P+ ++
Sbjct: 619 GLTRESAKFEIRDVHPSHYGRICPIETPEGQNIGLVTSPTVYARVNEYGFLITPYRKVEN 678
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ +L+ +E Y+IA +G + + V AR++ + + EQV +
Sbjct: 679 GRVTDKIEWLAAYEEENYVIAQSTPTD-EEGRIKAEFVLARHKNDIRLVKPEQVDYIDVS 737
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
Q S +SLIPF+EH+DANRALM SNMQRQAVPL ++ +VGTG+E+++A DS +
Sbjct: 738 PRQVISPSSSLIPFLEHDDANRALMGSNMQRQAVPLIFTQAPLVGTGMEKKIARDSHAVV 797
Query: 580 IAEHEGKIIYKDTNKIVLFGSGETLSV--PLVI---------YRRSNKNTCMHQKSQVQR 628
+A+ G + D +KI++ + E +++ PL I + R+N+ TC++Q+ V++
Sbjct: 798 VAKRGGVVEEVDGSKIIVRVNPEEINLEDPLDIGIDIYELRKFERTNQKTCVNQRPIVKK 857
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
G+ +++GQI+ADG +T GEL+LGK+VLVA+MPW GYN EDA++IS+RLV ED+YTS HI
Sbjct: 858 GERVEKGQIIADGHSTDRGELALGKDVLVAFMPWRGYNFEDAIVISERLVKEDVYTSIHI 917
Query: 689 RKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAK 748
+ E++ T G E IT +IP + L +LD++G+V +G++V+ GDILVGK+TP+
Sbjct: 918 EELEVEARETKVGDEEITRQIPGVPERALAHLDEHGIVRVGTYVKPGDILVGKVTPK--G 975
Query: 749 ESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGG 796
E+ PE++LL+AI G + K+ L+ P G G VIDV+ +KGG
Sbjct: 976 ETRLTPEEKLLQAIFGEKTKDVKDASLRCPPGVEGIVIDVQVFTRKGG 1023
Score = 228 bits (575), Expect = 3e-58
Identities = 132/308 (42%), Positives = 172/308 (54%), Gaps = 56/308 (18%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ ++I KR+IKVGDK+AGRHGNKG++S +L +DMP+L DG PVD+V NPLGVPSRMNV
Sbjct: 1155 VKVFIANKRKIKVGDKMAGRHGNKGVISVVLPVEDMPFLPDGTPVDIVLNPLGVPSRMNV 1214
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLV---FSELYQASKQTSNPWIFEPE 920
GQI E LG A L + E E+ RK + E+Y + F E
Sbjct: 1215 GQILETHLGWAAKELGKK-----IGEMIEKGRDRKAITEYLKEIYAVGDENGENAKFIEE 1269
Query: 921 Y-----------------------------------------------PGKSRIFDGRTG 933
+ GK+ ++DGRTG
Sbjct: 1270 FLNSLSEEEFWSVVRDYAQRGIPMATPAFEGADEKAVKELLKKAGLPESGKTTLYDGRTG 1329
Query: 934 TPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWAL 993
PF+ V +G ++LKLIH VDDKIH R++G Y+LVTQQPL GRA+ GGQR+GEMEVWAL
Sbjct: 1330 EPFDFEVTVGYMHMLKLIHMVDDKIHARATGPYSLVTQQPLGGRAQFGGQRLGEMEVWAL 1389
Query: 994 EGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
E G A+ LQEMLT KSD ++ R +V I+ G + PESF++LVREL+ L+L +
Sbjct: 1390 EAHGAAYTLQEMLTVKSDDVEGRSKVY-EAIVKGKYTYTPGIPESFKVLVRELKGLSLNV 1448
Query: 1054 NHFLVSEK 1061
EK
Sbjct: 1449 KCMNGEEK 1456
Score = 62.5 bits (149), Expect = 3e-08
Identities = 41/121 (33%), Positives = 66/121 (53%), Gaps = 9/121 (7%)
Query: 72 ESLTYSSELYVSAGLIWKNS---KNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQ 128
+ LTYS+ L V L K + + ++ G +PLM G+ I+NG RI+INQ+++
Sbjct: 120 KGLTYSAPLRVMLQLKAKTKNGYRTFPPRKVYFGEVPLMTDNGSFIINGTERIIINQLIR 179
Query: 129 SPGIYY-QSELDHKGISV----YTGTIISDWGGRLELEIDRKA-RIWARVSRKQKISILV 182
S G+++ + E K ++ Y +II D G R+E E+ I AR+ RK+ +I V
Sbjct: 180 SSGVFFDEKEEKQKDATITRILYRASIIPDKGSRVEFELSGATDLISARIDRKKLSAISV 239
Query: 183 L 183
L
Sbjct: 240 L 240
>sp|O67762|RPOB_AQUAE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||F70466 RNA polymerase beta subunit - Aquifex aeolicus
gb|AAC07723.1| (AE000764) RNA polymerase beta subunit [Aquifex aeolicus]
Length = 1468
Score = 400 bits (1016), Expect = e-110
Identities = 213/527 (40%), Positives = 333/527 (62%), Gaps = 14/527 (2%)
Query: 280 FLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGT 339
F+LP D++ +LI ++ DD+ HL N+R+RSV +LL++Q L + ++E + R
Sbjct: 499 FILPIDLVNILKYLIDLRHGRVKKDDIAHLGNRRVRSVGELLENQARLGIAKMEKVFRDR 558
Query: 340 ICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPG 399
+ PQ+ + +TT F LSQ LD TNPL+++ H R+LS LGPG
Sbjct: 559 SAVINPEQPDLKPQDFINPRYVTTAITDFLKTGQLSQYLDNTNPLSELTHKRRLSALGPG 618
Query: 400 GLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISE 459
GLT +A F IRD+H SHYGRICPI+T EG N+GL+ S ++AR+ +G + +P+ ++
Sbjct: 619 GLTRESAKFEIRDVHPSHYGRICPIETPEGQNIGLVTSPTVYARVNEYGFLITPYRKVEN 678
Query: 460 RSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIF 519
+ +L+ +E Y+IA +G + + + AR++ + + EQV +
Sbjct: 679 GKVTDKIEWLAAYEEENYVIAQSTPTD-EEGRLKAEFILARHKNDIRLVKPEQVEYIDVS 737
Query: 520 SFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLA 579
Q S +SLIPF+EH+DANRALM SNMQRQAVPL ++ ++GTG+E+++A DS +
Sbjct: 738 PRQVISPSSSLIPFLEHDDANRALMGSNMQRQAVPLIFTQAPLIGTGMEKKIARDSHAVV 797
Query: 580 IAEHEGKIIYKDTNKIVLFGSGETLSV--PLVI---------YRRSNKNTCMHQKSQVQR 628
+A+ G + D++KI++ + E ++ PL I ++R+N+ TC++Q+ V++
Sbjct: 798 VAKRGGVVEEVDSSKIIIRVNPEEINFDDPLDIGIDIYELRKFQRTNQKTCVNQRPIVRK 857
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
G+ +++GQI+ADG +T GEL+LGK+VLVA+MPW GYN EDA++IS+RLV ED+YTS HI
Sbjct: 858 GEKVEKGQIIADGHSTDRGELALGKDVLVAFMPWRGYNFEDAIVISERLVKEDVYTSIHI 917
Query: 689 RKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAK 748
+ E++ T G E IT +IP + L +LD++G+V +G++V+ GDILVGK+TP+
Sbjct: 918 EELEVEARETKVGEEEITRQIPGVPERALAHLDEHGIVRVGTYVKPGDILVGKVTPK--G 975
Query: 749 ESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
E+ PE++LL+AI G + K+ L+ P G G VIDV+ +KG
Sbjct: 976 ETRLTPEEKLLQAIFGEKTRDVKDASLRCPPGVEGIVIDVQVFTRKG 1022
Score = 227 bits (573), Expect = 5e-58
Identities = 133/308 (43%), Positives = 172/308 (55%), Gaps = 56/308 (18%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ ++I KR+IKVGDK+AGRHGNKG++S +L +DMP+L DG PVD+V NPLGVPSRMNV
Sbjct: 1154 VKVFIANKRKIKVGDKMAGRHGNKGVISVVLPVEDMPFLPDGTPVDIVLNPLGVPSRMNV 1213
Query: 864 GQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLV-------------------FSEL 904
GQI E LG A L + E E+ RK + F E
Sbjct: 1214 GQILETHLGWAAKELGKK-----IGEMIEKGRDRKAITEYLKEIFAIGDKDGENAKFIEE 1268
Query: 905 YQASKQTSNPWIFEPEYP-------------------------------GKSRIFDGRTG 933
+ S W +Y GK+ ++DGRTG
Sbjct: 1269 FLNSLSEEEFWSVVRDYAERGIPMATPAFEGAEEDAIKELLKKAGLPENGKTTLYDGRTG 1328
Query: 934 TPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWAL 993
PF+ V +G ++LKLIH VDDKIH R++G Y+LVTQQPL GRA+ GGQR+GEMEVWAL
Sbjct: 1329 EPFDFEVTVGYMHMLKLIHMVDDKIHARATGPYSLVTQQPLGGRAQFGGQRLGEMEVWAL 1388
Query: 994 EGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
E G A+ LQEMLT KSD ++ R +V I+ G + PESF++LVREL++L L +
Sbjct: 1389 EAHGAAYTLQEMLTVKSDDVEGRTKVY-EAIVKGKYTYTPGIPESFKVLVRELKALGLNV 1447
Query: 1054 NHFLVSEK 1061
EK
Sbjct: 1448 KCLNGEEK 1455
Score = 67.5 bits (162), Expect = 8e-10
Identities = 48/149 (32%), Positives = 76/149 (50%), Gaps = 10/149 (6%)
Query: 72 ESLTYSSELYVSAGLIWKNSKNIQE---QTIFIGNIPLMNSLGTSIVNGIYRIVINQILQ 128
+ LTYS+ L V L K +E + ++ G IPLM G+ I+NG RI+INQ+++
Sbjct: 120 KGLTYSAPLRVMLQLKAKTKNGYREFPPKKVYFGEIPLMTETGSFIINGTERIIINQLIR 179
Query: 129 SPGIYY-QSELDHKGISV----YTGTIISDWGGRLELEIDRKA-RIWARVSRKQKISILV 182
S G+++ + E K ++ Y G+II D G R+E E+ I AR+ RK K+S
Sbjct: 180 SSGVFFDEKEEKQKDATITRILYRGSIIPDKGSRVEFELSGATDLISARIDRK-KLSATA 238
Query: 183 LSSAMGSNLNEILENVCYPEIFLSFLNDK 211
+ A G + Y ++ + DK
Sbjct: 239 VLRAFGLETAYDILKYFYEDVRKFIVKDK 267
>emb|CAC10563.1| (Y16470) DNA-dependent RNA polymerase subunit beta [Porphyromonas
cangingivalis]
Length = 1270
Score = 399 bits (1015), Expect = e-110
Identities = 231/632 (36%), Positives = 368/632 (57%), Gaps = 30/632 (4%)
Query: 209 NDKEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFF-QQRCELGEIGRRNMN 267
N ++ S++ A+ Y+Q DPV S + FF ++R +LG++GR +N
Sbjct: 311 NTLQKDPSNSEKEAVYHIYKQLR--NQDPVDDASAREVINSLFFSEKRYDLGDVGRYRIN 368
Query: 268 RRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGL 327
++L ++I + L DI HL+ + +DD++HL N+R+R+V + L +QFG+
Sbjct: 369 KKLGINIDEETKVLTTEDITAIIAHLVELMNSKQVVDDIDHLSNRRVRTVGEQLYNQFGI 428
Query: 328 ALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQI 387
L R+ VR + +R + TP +L+ + +++ SFFG + LSQ +DRTNPL +I
Sbjct: 429 GLARMARTVRERM--NVRDNEVFTPIDLINAKTISSVVNSFFGTNALSQFMDRTNPLAEI 486
Query: 388 VHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRW 447
H R+LS LGPGGL+ A F +RD+H +HYGR+CPI+T EG N+GLI SL ++A+I
Sbjct: 487 THKRRLSSLGPGGLSRDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKINDL 546
Query: 448 GSIESPFFEISERSKRIH---MLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQE 504
G I +P+ ++ + + Y + ++ +A GN G + V ARY +
Sbjct: 547 GFISTPYRKVVDGKVDFSENGVEYYTAEAEDDKTVAQGNAPLDENGKFIKDAVYARYGSD 606
Query: 505 FLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVG 564
F ++ ++ L + Q SI ASLIPF+EH+DANRALM SNM RQAVPL S+ IVG
Sbjct: 607 FPVVSPSEIDLMDVSPIQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLIHSDAPIVG 666
Query: 565 TGLERQVALDSGTLAIAEHEGKIIYKDTNKIVL---------FGSGE-TLSV-PLVIYRR 613
TG+E+++ DS T +AE G + + D + I + F S E L + L +R+
Sbjct: 667 TGVEQKLVHDSRTQIVAEGAGTVEFVDASVIKIRYDRSEDDTFVSFEDNLKIYNLPKFRK 726
Query: 614 SNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLI 673
+N++T + + ++G +++G IL +G +T GEL+LG+NV VAYMPW+GYN EDA+++
Sbjct: 727 TNQSTTIDLRPICRKGDRVEKGDILTEGYSTENGELALGRNVQVAYMPWKGYNYEDAIVL 786
Query: 674 SDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVE 733
++R+V EDI+TS H+ +Y ++ T G E +T+ IP++ ++LD G++ +G+ V
Sbjct: 787 NERMVREDIFTSVHVDEYILEVRETKRGLEELTSDIPNVSEEATKDLDDRGIIRVGARVH 846
Query: 734 AGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDV----R 789
GDIL+GK+TP+ ES PE++LL AI G + K+ LK G VI +
Sbjct: 847 PGDILIGKITPK--GESDPTPEEKLLHAIFGDKAGDVKDASLKANPSLSGVVIKTHLFSK 904
Query: 790 WLHKKGGSGYNPETIHIYILQKREIKVGDKVA 821
+H K G E I++K + ++ +K+A
Sbjct: 905 AMHSKKDKGGVRE-----IVKKLDEEMEEKLA 931
Score = 225 bits (568), Expect = 2e-57
Identities = 120/248 (48%), Positives = 157/248 (62%), Gaps = 21/248 (8%)
Query: 806 IYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQ 865
+ I +KR+I+VGDK+AGRHGNKGIVSKI+ ++DMP+++DG P+D+ NPLGVPSRMN+GQ
Sbjct: 1037 VLIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFMEDGTPMDLCLNPLGVPSRMNLGQ 1096
Query: 866 IFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYP--G 923
IFE S + LD + FD AS + W + P G
Sbjct: 1097 IFELS-SMGSRRLDVKFATPIFDG-----------------ASLDDLDQWTDKAGIPRYG 1138
Query: 924 KSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQ 983
K+ ++DG TG F+QP +G Y LKL H VDDK+H RS G Y+L+TQQPL G+A+ GGQ
Sbjct: 1139 KTYLYDGGTGEQFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ 1198
Query: 984 RVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLV 1043
R GEMEVWALE +G AH+LQEMLT KSD + R + + G + P PES +L+
Sbjct: 1199 RFGEMEVWALEAYGAAHVLQEMLTIKSDDVVGRSKAYEAIVKGAPMPTP-GIPESLNVLL 1257
Query: 1044 RELRSLAL 1051
EL+ L L
Sbjct: 1258 HELKGLGL 1265
Score = 67.1 bits (161), Expect = 1e-09
Identities = 40/158 (25%), Positives = 76/158 (47%), Gaps = 4/158 (2%)
Query: 45 DQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTI----F 100
D F L Y + P + + LTY+ L L + ++ +T+ +
Sbjct: 62 DTRNNFVLEFLDYYIDPPRYTLDECISRGLTYNVPLKAKMKLYCTDPEHEDFETVIQDVY 121
Query: 101 IGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLEL 160
+G IP M GT I+NG R+V++Q+ +SPG+++ + G +++ II G +E
Sbjct: 122 LGPIPYMTESGTFIINGAERVVVSQMHRSPGVFFSESVHPNGTKLFSARIIPFKGSWIEF 181
Query: 161 EIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENV 198
D ++A + RK+K+ + L A+G ++ + N+
Sbjct: 182 ATDINNVMYAYIDRKKKLPVTTLLRAIGFETDKDILNL 219
>pir||T30824 RNA polymerase beta subunit - Neisseria meningitidis
emb|CAA91164.1| (Z54353) RNA polymerase beta subunit [Neisseria meningitidis]
Length = 1389
Score = 393 bits (1000), Expect = e-108
Identities = 226/612 (36%), Positives = 355/612 (57%), Gaps = 39/612 (6%)
Query: 215 KIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQRC-ELGEIGRRNMNRRL--- 270
K +++A + YR +P E++ + + FF + +L +GR N R
Sbjct: 360 KTAGRQAARVAIYRMMR---PEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQ 416
Query: 271 NLDIPQNNTF-------------------LLPRDILTAADHLIGMKFRMGTLDDMNHLKN 311
L Q N++ L DI+ + L+ ++ G +DD++HL N
Sbjct: 417 KLSEAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGN 476
Query: 312 KRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGL 371
+R+RSV +L ++QF L R+E V+ + A L+P +L+ + P++ + FFG
Sbjct: 477 RRVRSVGELTENQFRSGLARVERAVKERLNQAESENLMP--HDLINAKPVSAAIKEFFGS 534
Query: 372 HPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGIN 431
LSQ +D+TNPL+++ H R++S LGPGGLT A F +RD+H +HYGR+CPI+T EG N
Sbjct: 535 SQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 594
Query: 432 VGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGN 491
+GLI SL+++AR +G +E+P+ + + + YLS + Y+IA N + GN
Sbjct: 595 IGLINSLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANGDLDSDGN 654
Query: 492 QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQ 551
+V R + E + ++V + + Q S+ ASLIPF+EH+DANR LM +NMQRQ
Sbjct: 655 LIGDLVTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRPLMGANMQRQ 714
Query: 552 AVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV----- 606
A + EK +VGTG+ER VA+DS T AI + Y D N++V+ + +
Sbjct: 715 ASACLRPEKPMVGTGIERSVAVDSAT-AIVARRAVVEYVDANRVVIRVHDDEATAGEVGV 773
Query: 607 ---PLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWE 663
LV + RSN++T ++Q+ V+ G ++RG ++ADGA+T GEL+LG+N+ +A+MPW
Sbjct: 774 DIYNLVKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWN 833
Query: 664 GYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKN 723
N ED++LIS+++ +D YTS HI + + T G E IT IP+L + LD++
Sbjct: 834 VNNYEDSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDES 893
Query: 724 GLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRG 783
G+V +G+ VEAGD+LVGK+TP+ E+ PE++LLRAI G + S K+T L++P G G
Sbjct: 894 GIVYIGAEVEAGDVLVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSG 951
Query: 784 RVIDVRWLHKKG 795
VIDV+ ++G
Sbjct: 952 TVIDVQVFTREG 963
Score = 211 bits (532), Expect = 3e-53
Identities = 120/298 (40%), Positives = 172/298 (57%), Gaps = 48/298 (16%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ ++I KR ++ GDK+AGRHGNKG+VS+IL +DMPY+ DGRPVD+V NPLGVPSRMN+
Sbjct: 1089 VKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPSRMNI 1148
Query: 864 GQIFECSLGLA----GDVLDRHYR-------IAPFDERYEQEASRKLV------------ 900
GQI E LG A G+ +DR + + F R + ++ +
Sbjct: 1149 GQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLSRSGKKEDLDSLTDEEIIELA 1208
Query: 901 ---------FSELYQASKQTSNPWIFEPEYPGKSR---------------IFDGRTGTPF 936
S ++ +K++ + YP + ++DGR+G F
Sbjct: 1209 SNLRKGASFASPVFDGAKESEIREMLNLAYPSEDAEVEKLGFNDSKTQITLYDGRSGEAF 1268
Query: 937 EQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGF 996
++ V +G + LKL H VD+K+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWALE +
Sbjct: 1269 DRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1328
Query: 997 GVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELN 1054
G A+ LQEMLT KSD + R ++ I+ G PES +LV+E+RSL L+++
Sbjct: 1329 GAAYTLQEMLTVKSDDVNGRTKMY-ENIVKGEHKIDAGMPESLNVLVKEIRSLGLDID 1385
Score = 72.6 bits (175), Expect = 2e-11
Identities = 38/144 (26%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 57 YQLVEPSIKEKDAVYESLTYSSELYVSAGLIWKNS-------KNIQEQTIFIGNIPLMNS 109
Y L EP + +TY++ L L+ + K ++E +++G IPLM
Sbjct: 77 YTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKEVRENEVYMGEIPLMTP 136
Query: 110 LGTSIVNGIYRIVINQILQSPGIYYQ---SELDHKGISVYTGTIISDWGGRLELEIDRKA 166
G+ ++NG R++++Q+ +SPG++++ + G +++ II G L+ E D K
Sbjct: 137 SGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKD 196
Query: 167 RIWARVSRKQKISILVLSSAMGSN 190
++ R+ R++K+ + +L A+G N
Sbjct: 197 LLYFRIDRRRKMPVTILLKALGYN 220
>sp|Q46124|RPOB_CAMJE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||A81393 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain Cj0478
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB75116.1| (AL139075) DNA-directed RNA polymerase beta chain [Campylobacter
jejuni]
Length = 1378
Score = 391 bits (994), Expect = e-107
Identities = 231/609 (37%), Positives = 356/609 (57%), Gaps = 23/609 (3%)
Query: 203 IFLSFLNDKEEKKIGSKESAILEFYRQFACVG-------GDPVFPESLCRELQKKFFQ-Q 254
I SF D E K+ K+S ++ A + G+PV ++ + FF +
Sbjct: 348 IINSFAQDGETLKL-LKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPE 406
Query: 255 RCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRI 314
R +L ++GR MN +L L++P+ T L DI+ A +LI +K G +DD +HL N+RI
Sbjct: 407 RYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRI 466
Query: 315 RSVADLLQDQFGLALVRLENMVRG--TICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
RS+ +LL ++ L L +++ +R T A K++P +L+ +TTT FF
Sbjct: 467 RSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMP--YDLINPKMITTTIIEFFTGG 524
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+TNPL+++ H R+LS LG GGL A F +RD+H++HYGRICP++T EG N+
Sbjct: 525 QLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNI 584
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ 492
GLI +L+ +A++ G +E+P+ ++ ++YL+ +++E IA + +GN
Sbjct: 585 GLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNI 644
Query: 493 EEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQA 552
E+ V AR E + E+V L + S + ASLIPF+EH+DANRALM SNMQRQA
Sbjct: 645 VEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQA 704
Query: 553 VPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSVPLVIY- 611
VPL + IVGTG+E+ +A D+ A+ G ++ K NK + F GE P + +
Sbjct: 705 VPLLTASAPIVGTGMEQIIARDAWE-AVKAKRGGVVEKVDNKSI-FILGEDDKGPFIDHY 762
Query: 612 -----RRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYN 666
R+N+NT Q V++G +K GQI+ADG + GEL++GKN L+A+MPW GYN
Sbjct: 763 TMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYN 822
Query: 667 SEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLV 726
EDA+++S+R++ ED +TS HI + EI+ +G E IT IP+++ + +LD++G+
Sbjct: 823 YEDAIVVSERIIREDTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIA 882
Query: 727 ILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVI 786
+G+ ++ G ILVGK++P+ E PE+RLLRAI G + L G V+
Sbjct: 883 KIGTHIKPGMILVGKVSPK--GEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVV 940
Query: 787 DVRWLHKKG 795
DV+ KKG
Sbjct: 941 DVKIFTKKG 949
Score = 212 bits (535), Expect = 1e-53
Identities = 126/300 (42%), Positives = 167/300 (55%), Gaps = 42/300 (14%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +YI KR++KVGDK+AGRHGNKGIVS I+ DMPYL +G+ VD+ NPLGVPSRMN+
Sbjct: 1079 VKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNI 1138
Query: 864 GQIFECSLGLAG--------DVLDRHYRIAPFDERY-------------EQEASRKLVFS 902
GQI E LGL G ++ DR + + R E+E + L
Sbjct: 1139 GQILESHLGLVGLRLGDQIQEIFDRKQKDFLKELRAKILEICSIPRLANEKEFIKSLSDE 1198
Query: 903 ELYQASKQTSNPWIFEP--------------------EYPGKSRIFDGRTGTPFEQPVII 942
EL ++ S F + GK+ ++DGRTG + V +
Sbjct: 1199 ELLNYARDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHV 1258
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y+LKL H VD+K+H RS+G Y+LVTQQP+ G+A GGQR GEMEVWALE +G AH L
Sbjct: 1259 GCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTL 1318
Query: 1003 QEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSEKN 1062
+EMLT KSD ++ R G + PE+F +L EL+SLAL++ F E N
Sbjct: 1319 REMLTIKSDDVEGRFSAYKALTKGENV-PATGIPETFFVLTNELKSLALDVEIFDKDEDN 1377
Score = 83.5 bits (203), Expect = 1e-14
Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 22/218 (10%)
Query: 12 LPGLNQIQFEGFCRFI--DRGLT--EELFK--FPKIEDTDQEIEFQLFVETYQLVEPSIK 65
+P L Q+Q + F F+ D G + E++FK FP I D + + + ++ +P
Sbjct: 26 IPNLLQLQKKSFDYFLNLDNGESGIEKVFKSIFP-IHDPQNRLSLEYV--SSEIGKPKYT 82
Query: 66 EKDAVYESLTYSSELYVSAGLIWKNS----------KNIQEQTIFIGNIPLMNSLGTSIV 115
++ + LTYS L + L K+I+EQ I+I IPLM + I+
Sbjct: 83 IRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFII 142
Query: 116 NGIYRIVINQILQSPGIYYQSELDHKGIS--VYTGTIISDWGGRLELEIDRKARIWARVS 173
NG+ R+V+NQ+ +SPG+ ++ E + VYT II D G L E D K ++ R++
Sbjct: 143 NGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRIN 202
Query: 174 RKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDK 211
+++K+ + +L A+G +I++ + YP + DK
Sbjct: 203 KRRKVPVTMLFRALGYKKQDIIK-LFYPIQTIHVKKDK 239
>pir||S41868 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Campylobacter
jejuni (fragment)
emb|CAA54509.1| (X77304) RNA polymerase, beta subunit [Campylobacter jejuni]
Length = 694
Score = 387 bits (984), Expect = e-106
Identities = 229/609 (37%), Positives = 354/609 (57%), Gaps = 23/609 (3%)
Query: 203 IFLSFLNDKEEKKIGSKESAILEFYRQFACVG-------GDPVFPESLCRELQKKFFQ-Q 254
I SF D E K+ K+S ++ A + G+PV ++ + FF +
Sbjct: 11 IINSFAQDGETLKL-LKQSENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPE 69
Query: 255 RCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRI 314
R +L ++GR MN +L L++P+ T L DI+ A +LI +K G +DD +HL N+RI
Sbjct: 70 RYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRI 129
Query: 315 RSVADLLQDQFGLALVRLENMVRG--TICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
RS+ +LL ++ L L +++ +R T A K++P +L+ +TTT FF
Sbjct: 130 RSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMP--YDLINPKMITTTIIEFFTGG 187
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+TNPL+++ H R+LS LG GGL F +RD+H++HYGRICP++T EG N+
Sbjct: 188 QLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERRGFEVRDVHATHYGRICPVETPEGQNI 247
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ 492
GLI +L+ +A++ G +E+P+ ++ ++YL+ +++E IA + +GN
Sbjct: 248 GLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNI 307
Query: 493 EEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQA 552
E+ V AR E + E+V L + S + ASLIPF+EH+D NRALM SNMQRQA
Sbjct: 308 VEEFVEARQDGETILARREEVQLIDLSSGMVVGVAASLIPFLEHDDRNRALMGSNMQRQA 367
Query: 553 VPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSVPLVIY- 611
VPL + IVGTG+E+ +A D+ A+ G ++ K NK + F GE P + +
Sbjct: 368 VPLLTASAPIVGTGMEQIIARDAWE-AVKAKRGGVVEKVDNKSI-FILGEDDKGPFIDHY 425
Query: 612 -----RRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYN 666
R+N+NT Q V++G +K GQI+ADG + GEL++GKN L+A+MPW GYN
Sbjct: 426 TMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYN 485
Query: 667 SEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLV 726
EDA+++S+R++ ED +TS HI + EI+ +G E IT IP+++ + +LD++G+
Sbjct: 486 YEDAIVVSERIIREDTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIA 545
Query: 727 ILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVI 786
+G+ ++ G ILVGK++P+ E PE+RLLRAI G + L G V+
Sbjct: 546 KIGTHIKPGMILVGKVSPK--GEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVV 603
Query: 787 DVRWLHKKG 795
DV+ KKG
Sbjct: 604 DVKIFTKKG 612
>pir||F64669 DNA-directed RNA polymerase, beta subunit - Helicobacter pylori
(strain 26695)
gb|AAD08242.1| (AE000625) DNA-directed RNA polymerase, beta subunit (rpoB)
[Helicobacter pylori 26695]
Length = 2890
Score = 381 bits (967), Expect = e-104
Identities = 230/607 (37%), Positives = 342/607 (55%), Gaps = 19/607 (3%)
Query: 203 IFLSFLNDKEEKKIGSK------ESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QR 255
I SF D E K+ + E+A+ GDPV E + ++K FF +R
Sbjct: 347 IIQSFSADSESLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPER 406
Query: 256 CELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIR 315
+L +GR MN +L L +P T L DI+T +L+ +K G +DD +HL N+RIR
Sbjct: 407 YDLTMVGRMKMNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIR 466
Query: 316 SVADLLQDQFGLALVRLENMVRG---TICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
+V +LL ++ LV+++ ++ T+ GA + P +LV S +T+T FF
Sbjct: 467 AVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLM---PHDLVNSKMITSTIMEFFMGG 523
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+TNPL+++ H R+LS LG GGL F RD+H +HYGRICPI+T EG N+
Sbjct: 524 QLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNI 583
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ 492
GLI +L+ R+ G IE+P+ ++ + +YL+ +++ ++IA + +GN
Sbjct: 584 GLINTLSTFTRVNDLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNI 643
Query: 493 EEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQA 552
++ R E + +V L + S + ASLIPF+EH+DANRALM +NMQRQA
Sbjct: 644 LGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQA 703
Query: 553 VPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETL----SVPL 608
VPL +S+ IVGTG+E+ +A DS A G + D+ I + G + + L
Sbjct: 704 VPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGESKEEAYIDAYSL 763
Query: 609 VIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSE 668
R+N+NT +Q V+ G + GQI+ADG + GEL+LGKNV VA+MPW GYN E
Sbjct: 764 QKNLRTNQNTSFNQVPIVKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFE 823
Query: 669 DAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVIL 728
DA+++S+ + +DI+TS HI + E+ +G E T IP ++ L +LD++G+V +
Sbjct: 824 DAIVVSECITKDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKV 883
Query: 729 GSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDV 788
G++V AG ILVGK +P+ E PE+RLLRAI G + L P G VIDV
Sbjct: 884 GTYVSAGMILVGKTSPK--GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDV 941
Query: 789 RWLHKKG 795
+ KKG
Sbjct: 942 KVFTKKG 948
Score = 213 bits (538), Expect = 6e-54
Identities = 126/296 (42%), Positives = 168/296 (56%), Gaps = 44/296 (14%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +YI KR++KVGDK+AGRHGNKGIVS I+ DMPY DG PVD+V NPLGVPSRMN+
Sbjct: 1078 VKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNI 1137
Query: 864 GQIFECSLGLAG------------------------------------DVLDRHYRIAPF 887
GQI E LGL G D L H
Sbjct: 1138 GQILEMHLGLVGKEFGKQIARMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHALENCS 1197
Query: 888 DER---YEQEASRKLVFS-ELYQASKQTSNPWIFEPE---YPGKSRIFDGRTGTPFEQPV 940
DE Y ++ S+ + + +++ Q +FE GK ++DGRTG + V
Sbjct: 1198 DEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERV 1257
Query: 941 IIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAH 1000
+G Y++KL H VD+K+H RS+G Y+LVT QP+ G+A GGQR GEMEVWALE +G AH
Sbjct: 1258 NVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAH 1317
Query: 1001 ILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHF 1056
L+EMLT KSD I+ R+ G + + + PE+F +L +EL+SLAL++N F
Sbjct: 1318 TLKEMLTIKSDDIRGRENAYRAIAKGEQVGES-EIPETFYVLTKELQSLALDINIF 1372
Score = 93.2 bits (228), Expect = 1e-17
Identities = 53/157 (33%), Positives = 92/157 (57%), Gaps = 13/157 (8%)
Query: 67 KDAVYESLTYSSELYVSAGLI-WKNS---------KNIQEQTIFIGNIPLMNSLGTSIVN 116
++A+ +TYS L + LI W+ K+I+EQ+IFI IPLM + I+N
Sbjct: 83 REAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSIFIREIPLMTERTSFIIN 142
Query: 117 GIYRIVINQILQSPGIYYQSELDHKGIS--VYTGTIISDWGGRLELEIDRKARIWARVSR 174
G+ R+V+NQ+ +SPG+ ++ E ++ +YTG II D G L E D K ++AR+++
Sbjct: 143 GVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINK 202
Query: 175 KQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDK 211
++K+ + +L AM +I++ + YP + + + NDK
Sbjct: 203 RRKVPVTILFRAMDYQKQDIIK-MFYPLVKVRYENDK 238
>pir||B71846 dna-directed RNA polymerase, beta chain - Helicobacter pylori
(strain J99)
gb|AAD06699.1| (AE001540) DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter
pylori J99]
Length = 2890
Score = 377 bits (958), Expect = e-103
Identities = 219/569 (38%), Positives = 331/569 (57%), Gaps = 13/569 (2%)
Query: 235 GDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHL 293
GDPV E + ++K FF +R +L +GR MN +L L +P T L DI+T +L
Sbjct: 385 GDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDYITTLTHEDIITTVKYL 444
Query: 294 IGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRG---TICGAIRYKLIP 350
+ +K G +DD +HL N+RIR+V +LL ++ LV+++ ++ T+ GA +
Sbjct: 445 MKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLM-- 502
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
P +LV S +T+T FF LSQ +D+TNPL+++ H R+LS LG GGL F
Sbjct: 503 -PHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEA 561
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H ++YG+ PI+T EG N+GLI +L+ R+ G IE+P+ ++ + +YL+
Sbjct: 562 RDVHPTYYGQFGPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVAGETIYLT 621
Query: 471 PSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASL 530
+++ ++IA + +GN ++ R E + +V L + S + ASL
Sbjct: 622 AIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVAASL 681
Query: 531 IPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYK 590
IPF+EH+DANRALM +NMQRQAVPL +S+ IVGTG+E+ +A DS A G +
Sbjct: 682 IPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKI 741
Query: 591 DTNKIVLFGSGETL----SVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVG 646
D+ I + G G+ + L R+N+NT +Q V+ G ++ GQI+ADG +
Sbjct: 742 DSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVGDKVEAGQIIADGPSMDR 801
Query: 647 GELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERIT 706
GEL+LGKNV VA+MPW GYN EDA+++S+R+ +D++TS HI + E+ +G E T
Sbjct: 802 GELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTSTHIYEKEVDARELKHGVEEFT 861
Query: 707 NKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQ 766
IP ++ L +LD++G+V +G++V AG ILVGK +P+ E PE+RLLRAI G +
Sbjct: 862 ADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK--GEIKSTPEERLLRAIFGDK 919
Query: 767 VSTSKETCLKLPIGGRGRVIDVRWLHKKG 795
L P G VIDV+ KKG
Sbjct: 920 AGHVVNKSLYCPPSLEGTVIDVKVFTKKG 948
Score = 214 bits (539), Expect = 5e-54
Identities = 126/296 (42%), Positives = 168/296 (56%), Gaps = 44/296 (14%)
Query: 804 IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNV 863
+ +YI KR++KVGDK+AGRHGNKGIVS I+ DMPY DG PVD+V NPLGVPSRMN+
Sbjct: 1078 VKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNI 1137
Query: 864 GQIFECSLGLAG------------------------------------DVLDRHYRIAPF 887
GQI E LGL G D L H
Sbjct: 1138 GQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLENCS 1197
Query: 888 DER---YEQEASRKLVFS-ELYQASKQTSNPWIFEPE---YPGKSRIFDGRTGTPFEQPV 940
DE Y ++ S+ + + +++ Q +FE GK ++DGRTG + V
Sbjct: 1198 DEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERV 1257
Query: 941 IIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAH 1000
+G Y++KL H VD+K+H RS+G Y+LVT QP+ G+A GGQR GEMEVWALE +G AH
Sbjct: 1258 NVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAH 1317
Query: 1001 ILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHF 1056
L+EMLT KSD I+ R+ G + + + PE+F +L +EL+SLAL++N F
Sbjct: 1318 TLKEMLTIKSDDIRGRENAYRAIAKGEQVGES-EIPETFYVLTKELQSLALDINIF 1372
Score = 92.4 bits (226), Expect = 2e-17
Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 13/157 (8%)
Query: 67 KDAVYESLTYSSELYVSAGLI-WKNS---------KNIQEQTIFIGNIPLMNSLGTSIVN 116
++A+ +TYS L + LI W+ K+I+EQ+IFI IPLM + I+N
Sbjct: 83 REAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSIFIREIPLMTERTSFIIN 142
Query: 117 GIYRIVINQILQSPGIYYQSELDHKGIS--VYTGTIISDWGGRLELEIDRKARIWARVSR 174
G+ R+V+NQ+ +SPG+ ++ E + +YTG II D G L E D K ++AR+++
Sbjct: 143 GVERVVVNQLYRSPGVIFKEEESSTSSNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINK 202
Query: 175 KQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDK 211
++K+ + +L AM +I++ + YP + + + NDK
Sbjct: 203 RRKVPVTILFRAMDYQKQDIIK-MFYPLVKVRYENDK 238
>gb|AAD17842.1| (AF095904) DNA dependent RNA polymerase beta subunit [Toxoplasma
gondii]
Length = 1051
Score = 366 bits (930), Expect = e-100
Identities = 280/998 (28%), Positives = 476/998 (47%), Gaps = 76/998 (7%)
Query: 92 KNIQEQTIFIGNI-----PLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVY 146
+N++ +F N+ P NS +NG+ +I I++ S GI++ L K ++Y
Sbjct: 88 QNLKTNKVFFKNLLIFELPKYNSYNYCYLNGLKKIFISKYFTSNGIFFNKYLKRK-YNIY 146
Query: 147 TGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPE---- 202
++ + +D K + + K + ++ +G +IL+ Y
Sbjct: 147 YAKLLLTNSNFFNIILDLKLKQIYLSIKNLKFNFILFLYYLGIKNTDILKYSRYKNSKIL 206
Query: 203 ---IFLSFLNDK-EEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQRCEL 258
IF + D KKI K L+ +F ++ + K F
Sbjct: 207 KLLIFSALQTDLVNNKKIILKNLNYLK-----------SIFKLTILNKNYKNFI------ 249
Query: 259 GEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVA 318
I + +N D +NN ++ D + D L+ ++ + ++HL NK I ++
Sbjct: 250 --ISKDKLNYNYG-DFSKNNLLII--DFIFILDLLLDLQSKKLCFKTIDHLDNKHINTIG 304
Query: 319 DLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVL 378
+ Q F L + +++ I ++ L+ ++ L+PL Q L
Sbjct: 305 NYFQHNFKFYLKKFISIIPNLI-KLQKFSLLKV-----------YNFKELLILNPLIQYL 352
Query: 379 DRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSL 438
++ N ++++H KL+ + +R+I + G++C IDT+EGIN GL+ S
Sbjct: 353 EQINSFSELMHKYKLNNYN----SFSKGILNLREICLNQLGKLCLIDTTEGINCGLVVSF 408
Query: 439 AIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVP 498
A H RI + G I+ F I + + + + + E Y+I N + + ++
Sbjct: 409 AKHIRIYKKGIIQVYFSSIFKNKTKEFLNFKTSLDQELYLIQFNNINL----RKIKYLMN 464
Query: 499 AR--YRQEFLTIAWEQVHLRSIFSF-QYFSIGASLIPFIEHNDANRALMSSNMQRQAVPL 555
R Y + I + + F FS +LIPFI++ND R LM + MQ Q+VPL
Sbjct: 465 VRLVYNKNNFRIKFFSNKKSILLEFTDLFSFTENLIPFIKYNDPARCLMGAKMQSQSVPL 524
Query: 556 SQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGS-GETLSVPLVIYRRS 614
+K V TG E+++ S T A EG ++ + KI + + L Y++S
Sbjct: 525 LNKKKSFVITGYEKEIITKSDTTIKALQEGIVLNASSLKIHIKDLFNREIVYYLSKYKKS 584
Query: 615 NKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLIS 674
N+NT +HQK V G+ + Q+L + E ++G N+L+ Y + GY+ EDAV++S
Sbjct: 585 NQNTIIHQKPLVWNGERVFTNQLLTQHQDIIDSEFAIGNNLLIYYGNFCGYDFEDAVIVS 644
Query: 675 DRLVYEDIYTSFHIRKYEIQ-THVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVE 733
R++Y+ +++S H+ YE + N E T +IP ++ +NLD G++ G +
Sbjct: 645 KRVLYQQLFSSLHMDIYEFNFCYNNENDIEFSTLEIPKQSYYIKKNLDSLGIIKEGEKIL 704
Query: 734 AGDILVGKLTPQMAKES-SYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRV------- 785
G IL+ K+ ++AK + +Y +L+ +I G + K+ L + G GRV
Sbjct: 705 TGSILLTKI--KVAKPTYTYKSIFKLIYSIFGKTIRNIKDNSLYIQTGKSGRVSKIELFL 762
Query: 786 IDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDG 845
+++ HK + I+I ++R + VGDK+ GR+GNKGI+S I D+P+LQ+
Sbjct: 763 VNISSRHKYKTYNNSYLKCRIFICKQRFLTVGDKLCGRYGNKGILSYIAENADLPFLQNS 822
Query: 846 RPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPF---DERYEQEASRKLVFS 902
D++ LG+PSRMN+GQ+FE +G + RI P + L+++
Sbjct: 823 FYPDIIVGALGIPSRMNLGQLFEALVGKIS--FSYNIRILPSFTTSSNLYFNYLKILIYN 880
Query: 903 ELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRS 962
L + + W++ PGK I DGRTG + V+ G KLIH + DK+H R+
Sbjct: 881 FLMFNNFKKGFNWLYNFNLPGKFIIRDGRTGVKLKSSVLCGVSRYSKLIHLIKDKLHFRT 940
Query: 963 SGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGT 1022
+G Y + QQPLKG+ GGQR GEME+WALE FG ++ L+E+L YKSD AR +
Sbjct: 941 TGPYTEILQQPLKGKKNLGGQRFGEMEIWALEAFGASYNLKEILNYKSDDCFARNNLKEY 1000
Query: 1023 TIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSE 1060
+ T + ESFR++++E L L L FL+++
Sbjct: 1001 LLFRNTELQNSTITESFRVILKEFNGLILNLELFLITD 1038
>gi|11496555 RNA polymerase B [Toxoplasma gondii]
gb|AAD41152.1|U87145_21 (U87145) RNA polymerase B [Toxoplasma gondii]
Length = 1051
Score = 365 bits (926), Expect = 2e-99
Identities = 280/998 (28%), Positives = 475/998 (47%), Gaps = 76/998 (7%)
Query: 92 KNIQEQTIFIGNI-----PLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVY 146
+N++ +F N+ P NS +NG+ +I I++ S GI++ L K ++Y
Sbjct: 88 QNLKTNKVFFKNLLIFELPKYNSYNYCYLNGLKKIFISKYFTSNGIFFNKYLKRK-YNIY 146
Query: 147 TGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPE---- 202
++ + +D K + + K + ++ +G +IL+ Y
Sbjct: 147 YAKLLLTNSNFFNIILDLKLKQIYLSIKNLKFNFILFLYYLGIKNTDILKYSRYKNSKIL 206
Query: 203 ---IFLSFLNDK-EEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQRCEL 258
IF + D KKI K L+ +F ++ + K F
Sbjct: 207 KLLIFSALQTDLVNNKKIILKNLNYLK-----------SIFKLTILNKNYKNFI------ 249
Query: 259 GEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVA 318
I + +N D +NN ++ D + D L+ ++ + ++HL NK I ++
Sbjct: 250 --ISKDKLNYNYG-DFSKNNLLII--DFIFILDLLLDLQSKKLCFKTIDHLDNKHINTIG 304
Query: 319 DLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVL 378
+ Q F L + +++ I ++ L+ ++ L+PL Q L
Sbjct: 305 NYFQHNFKFYLKKFISIIPNLI-KLQKFSLLKV-----------YNFKELLILNPLIQYL 352
Query: 379 DRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSL 438
++ N ++++H KL+ + +R+I + G++C IDT+EGIN GL+ S
Sbjct: 353 EQINSFSELMHKYKLNNYN----SFSKGILNLREICLNQLGKLCLIDTTEGINCGLVVSF 408
Query: 439 AIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVP 498
A H RI + G I+ F I + + + + + E Y+I N + + ++
Sbjct: 409 AKHIRIYKKGIIQVYFSSIFKNKTKEFLNFKTSLDQELYLIQFNNINL----RKIKYLMN 464
Query: 499 AR--YRQEFLTIAWEQVHLRSIFSF-QYFSIGASLIPFIEHNDANRALMSSNMQRQAVPL 555
R Y + I + + F FS +LIPFI++ND R LM + MQ Q+VPL
Sbjct: 465 VRLVYNKNNFRIKFFSNKKSILLEFTDLFSFTENLIPFIKYNDPARCLMGAKMQSQSVPL 524
Query: 556 SQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGS-GETLSVPLVIYRRS 614
+K V TG E+++ S T A EG ++ + KI + + L Y++S
Sbjct: 525 LNKKKSFVITGYEKEIITKSDTTIKALQEGIVLNASSLKIHIKDLFNREIVYYLSKYKKS 584
Query: 615 NKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLIS 674
N+NT +HQK V G+ + Q+L + E ++G N+L Y + GY+ EDAV++S
Sbjct: 585 NQNTIIHQKPLVWNGERVFTNQLLTQHQDIIDSEFAIGNNLLFYYGNFCGYDFEDAVIVS 644
Query: 675 DRLVYEDIYTSFHIRKYEIQ-THVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVE 733
R++Y+ +++S H+ YE + N E T +IP ++ +NLD G++ G +
Sbjct: 645 KRVLYQQLFSSLHMDIYEFNFCYNNENDIEFSTLEIPKQSYYIKKNLDSLGIIKEGEKIL 704
Query: 734 AGDILVGKLTPQMAKES-SYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRV------- 785
G IL+ K+ ++AK + +Y +L+ +I G + K+ L + G GRV
Sbjct: 705 TGSILLTKI--KVAKPTYTYKSIFKLIYSIFGKTIRNIKDNSLYIQTGKSGRVSKIELFL 762
Query: 786 IDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDG 845
+++ HK + I+I ++R + VGDK+ GR+GNKGI+S I D+P+LQ+
Sbjct: 763 VNISSRHKYKTYNNSYLKCRIFICKQRFLTVGDKLCGRYGNKGILSYIAENADLPFLQNS 822
Query: 846 RPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPF---DERYEQEASRKLVFS 902
D++ LG+PSRMN+GQ+FE +G + RI P + L+++
Sbjct: 823 FYPDIIVGALGIPSRMNLGQLFEALVGKIS--FSYNIRILPSFTTSSNLYFNYLKILIYN 880
Query: 903 ELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRS 962
L + + W++ PGK I DGRTG + V+ G KLIH + DK+H R+
Sbjct: 881 FLMFNNFKKGFNWLYNFNLPGKFIIRDGRTGVKLKSSVLCGVSRYSKLIHLIKDKLHFRT 940
Query: 963 SGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGT 1022
+G Y + QQPLKG+ GGQR GEME+WALE FG ++ L+E+L YKSD AR +
Sbjct: 941 TGPYTEILQQPLKGKKNLGGQRFGEMEIWALEAFGASYNLKEILNYKSDDCFARNNLKEY 1000
Query: 1023 TIIGGTISKPVDAPESFRLLVRELRSLALELNHFLVSE 1060
+ T + ESFR++++E L L L FL+++
Sbjct: 1001 LLFRNTELQNSTITESFRVILKEFNGLILNLELFLITD 1038
>gb|AAF14261.1|AF138960_2 (AF138960) DNA dependent RNA polymerase beta subunit [Neospora
caninum]
Length = 1050
Score = 364 bits (924), Expect = 4e-99
Identities = 280/995 (28%), Positives = 473/995 (47%), Gaps = 71/995 (7%)
Query: 92 KNIQEQTIFIGNI-----PLMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHKGISVY 146
+N++ IF N+ P NS +NG+ +I I++ S GI++ L K +Y
Sbjct: 88 QNLKTNQIFFKNLLIFELPKYNSHNYCYLNGLKKIFISKYFTSNGIFFHKYLKRK-YDIY 146
Query: 147 TGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVCYPE---I 203
I+ + +D K + + K + ++ +G N +IL+ Y + +
Sbjct: 147 YAKILLTNSNFFNIVLDLKLKQIYLSIKNLKFNFILFLYYLGINNKDILKYSRYKKSKIL 206
Query: 204 FLSFLNDKEEKKIGSKESAI--LEFYRQFACVGGDPVFPESLCRELQKKFFQQRCELG-E 260
L + I +K+ + L + + +F + + K F + +L
Sbjct: 207 KLLIFTALQTNLINNKKFILKNLNYLKS--------IFKVTNLNKNYKHFIINKNKLNYN 258
Query: 261 IGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADL 320
G N N L +D F+L D L+ ++ + +++HL NK I ++ +
Sbjct: 259 YGNFNKNNFLTIDF----IFIL--------DLLLDLQSKKLCFKNIDHLDNKHINTIGNY 306
Query: 321 LQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDR 380
Q F L + +++ I ++ L+ ++ L+PL Q L++
Sbjct: 307 FQHNFKFYLKKFISIIPNLI-KLKKFSLLK-----------VYNFKELLILNPLIQYLEQ 354
Query: 381 TNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAI 440
N +++ H KL+ + +R+I + G++C IDT+EGIN GLI + A
Sbjct: 355 INSFSELTHKYKLNNYN----SSLKGILNLREICLNQIGKLCLIDTTEGINCGLIVNFAK 410
Query: 441 HARIGRWGSIE---SPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIV 497
H RI + G I+ SP F ++K + S D+ + N + L + + +
Sbjct: 411 HIRIYKKGIIQIYVSPVF----KNKTKEFINFKTSLDQELYLIQFNNINLRKNKLFNENI 466
Query: 498 PARYRQEFLTIAWEQVHLRSIFSF-QYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS 556
Y + I + + F FS +LIPFI++ND R LM + MQ Q+VPL
Sbjct: 467 KVVYNKNNFRIKFISNKKSFLLKFADLFSFTENLIPFIKYNDPARCLMGAKMQSQSVPLL 526
Query: 557 QSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFG-SGETLSVPLVIYRRSN 615
+K V TG E+++ S A EG ++ + KI + + L Y++SN
Sbjct: 527 NKKKSFVVTGYEKEIITKSDITIKALQEGIVLNASSLKIHIKDLFNREIVYYLSKYKKSN 586
Query: 616 KNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISD 675
+NT +HQK V G+ + Q+L + E ++G N+L+ Y + GY+ EDAV+ S
Sbjct: 587 QNTLIHQKPLVWNGERVFTNQLLTQHQDIIDSEFAIGNNLLIYYGNFCGYDFEDAVIGSK 646
Query: 676 RLVYEDIYTSFHIRKYEIQ-THVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEA 734
R++Y+ +++S H+ YE + N E T +IP ++ ++LD G+V G +
Sbjct: 647 RVLYQQLFSSLHMDIYEFNFGYNNENDIEFSTLEIPKQSYYIKKSLDSLGIVKEGEKILT 706
Query: 735 GDILVGKLTPQMAKES-SYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHK 793
G+IL+ K+ ++ K + +Y +L+ +I G + K+ L + G GRV +
Sbjct: 707 GNILLTKI--KVTKPNYTYKSIFKLIYSIFGKTIRNIKDNSLYIQTGKNGRVSKIELFLI 764
Query: 794 KGGSGYNPET-----IHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPV 848
S Y I+I ++R + VGDK+ GR+GNKGI+S I D+P+LQ+
Sbjct: 765 NTNSHYKTYNNSYLKCRIFICKQRFLTVGDKLCGRYGNKGILSYIAENADLPFLQNSFYP 824
Query: 849 DMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAP---FDERYEQEASRKLVFSELY 905
D++ LG+PSRMN+GQ+FE +G G + RI P + L+++ L
Sbjct: 825 DIIVGALGIPSRMNLGQLFEALVGKIG--FSYNIRILPSFTSSSNAYFNYLKILIYNFLM 882
Query: 906 QASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGH 965
+ + W++ PGK I DGRTG + V+ G KLIH + DK+H R++G
Sbjct: 883 FNNLKKGFNWLYNFNLPGKFLIRDGRTGIKLKSSVLCGVSRYSKLIHMIKDKLHFRTTGP 942
Query: 966 YALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTII 1025
Y + QQPLKG+ GGQR GEME+WALE FG ++ L+E+L YKSD AR + +
Sbjct: 943 YTEILQQPLKGKKNLGGQRFGEMEIWALEAFGASYNLKEILNYKSDDCFARNNLKDYLLF 1002
Query: 1026 GGTISKPVDAPESFRLLVRELRSLALELNHFLVSE 1060
+ + ESFR++++E L L L FL+++
Sbjct: 1003 RNSELQNSTITESFRVILKEFNGLILNLELFLITD 1037
>sp|P77941|RPOB_RICTY DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
gb|AAD52032.1|AF083622_1 (AF083622) RNA polymerase beta subunit [Rickettsia typhi]
Length = 1376
Score = 363 bits (921), Expect = 8e-99
Identities = 203/501 (40%), Positives = 302/501 (59%), Gaps = 15/501 (2%)
Query: 219 KESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQN 277
+E+A+ + +R G+P E+ FF +R +L E+GR MN RL L+I +
Sbjct: 376 REAALCDIFRVLR--PGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEE 433
Query: 278 NTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE-NMV 336
T L DI L+ +K G +DD++HL N+R+RSV +L+++QF + LVR+E +++
Sbjct: 434 ITVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRIEKSVI 493
Query: 337 RGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYL 396
G + + P +LV S L + + FF LSQ +D+TNPL++I H R+LS L
Sbjct: 494 ERMSAGDVDTVM---PHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSAL 550
Query: 397 GPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFE 456
GPGGL+ A F +RD+H +HYGRICPI+T EG N+GLI S+A +ARI + G IESP+
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRR 610
Query: 457 ISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYR-QEFLTIAWEQVHL 515
+ + ++YLS + Y I N G + + + R F+ + +V
Sbjct: 611 VKDGYVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNFVMVEPYEVDF 670
Query: 516 RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDS 575
+ Q S+ ASLIPF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DS
Sbjct: 671 IDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGTGVEGVVAKDS 730
Query: 576 GTLAIAEHEGKIIYKDTNKIVL-------FGSGETLSVPLVIYRRSNKNTCMHQKSQVQR 628
G +A H+G + D+N+IV+ GS L+ +++SN NTC++QK V+
Sbjct: 731 GASVLALHDGIVERVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKV 790
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
G +K+ I+ADG +T GE++LG+NVLVA++PW GYN ED++LIS+R+V ED++TS HI
Sbjct: 791 GHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHI 850
Query: 689 RKYEIQTHVTSNGPERITNKI 709
++E+ T G E +I
Sbjct: 851 EEFEVIARDTRLGGEDFDTRI 871
Score = 201 bits (505), Expect = 5e-50
Identities = 116/290 (40%), Positives = 168/290 (57%), Gaps = 39/290 (13%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + ++I K +++ GDK+AGRHGNKG++S+I+ +DMP+L+DG VD+V NPLG+PSRM
Sbjct: 1086 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1145
Query: 862 NVGQIFECSLGLAG-------DVLDRHYR--------IAPF-------DERYEQEASRKL 899
N+GQI E LG A L + Y+ I F D Y E S +
Sbjct: 1146 NIGQILETHLGWASINLAKKISTLVKEYKDNNIDIEQIKKFLLELYGKDINYILEGSEEG 1205
Query: 900 VFSELYQASKQT--SNPW--------------IFEPEYPGKSRIFDGRTGTPFEQPVIIG 943
+ S + SK + P + + + G+ ++ DGRTG F++ V +G
Sbjct: 1206 IISFCNKVSKGVYFATPVFDGAKVQDVKDMLKLADQDLSGQVKLIDGRTGEYFDRLVTVG 1265
Query: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQ 1003
+ Y+LKL H VD+KIH RS G Y+LVTQQPL ++ GGQR GEME WAL+ +G A+ LQ
Sbjct: 1266 HKYLLKLPHLVDNKIHSRSIGPYSLVTQQPLGSKSHFGGQRFGEMECWALQAYGAAYTLQ 1325
Query: 1004 EMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
EMLT KSD + R + +I+ G + PESF ++++E RSL L +
Sbjct: 1326 EMLTVKSDDVNGRIKTY-DSIVRGENNFESGIPESFNVMIKEFRSLCLNV 1374
Score = 86.6 bits (211), Expect = 1e-15
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 14/181 (7%)
Query: 28 DRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGL- 86
++GL L I D+ + FV+ Y+ P + SL+Y++ L V+ L
Sbjct: 59 NKGLQSILNSIFPISDSSNIANLE-FVK-YEFDTPKYDVDECSQRSLSYAAPLKVTLRLS 116
Query: 87 IW--------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY---Q 135
IW + K I+EQ +++G+IPLM GT I+NG R+V++Q+ +SPG+++ +
Sbjct: 117 IWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDE 176
Query: 136 SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ G +Y+ +I G L+LE D K I+ R+ RK+K+ L A+G N EI+
Sbjct: 177 GKVHSSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMNTEEIM 236
Query: 196 E 196
+
Sbjct: 237 K 237
>gb|AAB88811.1| (AF035660) DNA-dependent RNA polymerase beta subunit [Rickettsia
typhi]
Length = 864
Score = 360 bits (915), Expect = 4e-98
Identities = 201/493 (40%), Positives = 299/493 (59%), Gaps = 15/493 (3%)
Query: 219 KESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QRCELGEIGRRNMNRRLNLDIPQN 277
+E+A+ + +R G+P E+ FF +R +L E+GR MN RL L+I +
Sbjct: 376 REAALCDIFRVLR--PGEPANIEAAESLFYNLFFDAERYDLSEVGRIKMNSRLELNISEE 433
Query: 278 NTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLE-NMV 336
T L DI L+ +K G +DD++HL N+R+RSV +L+++QF + LVR+E +++
Sbjct: 434 ITVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRIEKSVI 493
Query: 337 RGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYL 396
G + + P +LV S L + + FF LSQ +D+TNPL++I H R+LS L
Sbjct: 494 ERMSAGDVDTVM---PHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSAL 550
Query: 397 GPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFE 456
GPGGL+ A F +RD+H +HYGRICPI+T EG N+GLI S+A +ARI + G IESP+
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRR 610
Query: 457 ISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYR-QEFLTIAWEQVHL 515
+ + ++YLS + Y I N G + + + R F+ + +V
Sbjct: 611 VKDGYVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNFVMVEPYEVDF 670
Query: 516 RSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDS 575
+ Q S+ ASLIPF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DS
Sbjct: 671 IDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGTGVEGVVAKDS 730
Query: 576 GTLAIAEHEGKIIYKDTNKIVL-------FGSGETLSVPLVIYRRSNKNTCMHQKSQVQR 628
G +A H+G + D+N+IV+ GS L+ +++SN NTC++QK V+
Sbjct: 731 GASVLALHDGIVERVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKV 790
Query: 629 GKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHI 688
G +K+ I+ADG +T GE++LG+NVLVA++PW GYN ED++LIS+R+V ED++TS HI
Sbjct: 791 GHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHI 850
Query: 689 RKYEIQTHVTSNG 701
++E+ T G
Sbjct: 851 EEFEVIARDTRLG 863
Score = 86.6 bits (211), Expect = 1e-15
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 14/181 (7%)
Query: 28 DRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGL- 86
++GL L I D+ + FV+ Y+ P + SL+Y++ L V+ L
Sbjct: 59 NKGLQSILNSIFPISDSSNIANLE-FVK-YEFDTPKYDVDECSQRSLSYAAPLKVTLRLS 116
Query: 87 IW--------KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYY---Q 135
IW + K I+EQ +++G+IPLM GT I+NG R+V++Q+ +SPG+++ +
Sbjct: 117 IWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDE 176
Query: 136 SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEIL 195
++ G +Y+ +I G L+LE D K I+ R+ RK+K+ L A+G N EI+
Sbjct: 177 GKVHSSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMNTEEIM 236
Query: 196 E 196
+
Sbjct: 237 K 237
>gb|AAB47279.1| (U86609) DNA-directed RNA polymerase homolog [Helicobacter pylori]
Length = 880
Score = 345 bits (875), Expect = 2e-93
Identities = 202/537 (37%), Positives = 307/537 (56%), Gaps = 17/537 (3%)
Query: 203 IFLSFLNDKEEKKIGSK------ESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ-QR 255
I SFL D E K+ + E+A+ GDPV E + ++K FF +R
Sbjct: 347 IIHSFLADYESLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPER 406
Query: 256 CELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIR 315
+L +GR MN +L L +P T L DI+T +L+ +K G +DD +HL N+RIR
Sbjct: 407 YDLTMVGRMKMNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIR 466
Query: 316 SVADLLQDQFGLALVRLENMVRG---TICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372
+V +LL ++ LV+++ ++ T+ GA + P +LV S +T+T FF
Sbjct: 467 AVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLM---PHDLVNSKMITSTIMEFFMGG 523
Query: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINV 432
LSQ +D+TNPL+++ H R+LS LG GGL F RD+H +HYGRICPI+T EG N+
Sbjct: 524 QLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNI 583
Query: 433 GLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQ 492
GLI +L+ R+ G IE+P+ ++ + +YL+ +++ ++IA + +GN
Sbjct: 584 GLINTLSTFTRVNDLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNI 643
Query: 493 EEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQA 552
++ R E + +V L + S + ASLIPF+EH+DANRALM +NMQRQA
Sbjct: 644 LGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQA 703
Query: 553 VPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETL----SVPL 608
VPL +S+ IVGTG+E+ +A DS A G + D+ I + G G+ + L
Sbjct: 704 VPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSL 763
Query: 609 VIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSE 668
R+N+NT +Q V+ G ++ GQI+ADG + GEL+LGKNV VA+MPW GYN E
Sbjct: 764 QKNLRTNQNTSFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFE 823
Query: 669 DAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGL 725
DA+++S+R+ +DI+TS HI + E+ +G E T IP ++ L +LD++G+
Sbjct: 824 DAIVVSERITKDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGI 880
Score = 93.2 bits (228), Expect = 1e-17
Identities = 53/157 (33%), Positives = 92/157 (57%), Gaps = 13/157 (8%)
Query: 67 KDAVYESLTYSSELYVSAGLI-WKNS---------KNIQEQTIFIGNIPLMNSLGTSIVN 116
++A+ +TYS L + LI W+ K+I+EQ+IFI IPLM + I+N
Sbjct: 83 REAMERGITYSIPLKIKVRLILWEKDTRSGEKNGIKDIKEQSIFIREIPLMTERTSFIIN 142
Query: 117 GIYRIVINQILQSPGIYYQSELDHKGIS--VYTGTIISDWGGRLELEIDRKARIWARVSR 174
G+ R+V+NQ+ +SPG+ ++ E ++ +YTG II D G L E D K ++AR+++
Sbjct: 143 GVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINK 202
Query: 175 KQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDK 211
++K+ + +L AM +I++ + YP + + + NDK
Sbjct: 203 RRKVPVTILFRAMDYQKQDIIK-MFYPLVKVRYENDK 238
>dbj|BAA02417.1| (D13109) rpoB protein [Oryza sativa]
Length = 193
Score = 305 bits (772), Expect = 2e-81
Identities = 153/195 (78%), Positives = 172/195 (87%), Gaps = 2/195 (1%)
Query: 1 MLGVGNEGMSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLV 60
ML GNEGMST+PG +QIQFEGFCRFI++GL EEL KFP I+D D I FQLF + YQL+
Sbjct: 1 MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHGISFQLFAKGYQLL 60
Query: 61 EPSIKEKDAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYR 120
EPSIKE+DAVYESLTYSSELYVSA LI+ ++Q+QTI+IGNIP+MNSLGT I+NGIYR
Sbjct: 61 EPSIKERDAVYESLTYSSELYVSARLIF--GFDVQKQTIYIGNIPIMNSLGTFIINGIYR 118
Query: 121 IVINQILQSPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI 180
IVINQIL SPGIYY+SELDHKGIS+YTGTIISDWGGR EL ID+K RIWARVSRKQKIS+
Sbjct: 119 IVINQILLSPGIYYRSELDHKGISIYTGTIISDWGGRSELAIDKKERIWARVSRKQKISV 178
Query: 181 LVLSSAMGSNLNEIL 195
LVLSSAMGSNL EIL
Sbjct: 179 LVLSSAMGSNLKEIL 193
>sp|P21421|RPOB_PLAFA DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||RNZQBF DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Plasmodium
falciparum plastid
emb|CAA53232.1| (X75544) beta subunit RNA polymerase [Plasmodium falciparum]
emb|CAA64572.1| (X95275) rpoB [Plasmodium falciparum]
Length = 1024
Score = 282 bits (714), Expect = 1e-74
Identities = 217/773 (28%), Positives = 372/773 (48%), Gaps = 45/773 (5%)
Query: 306 MNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTY 365
+N++ NK+ S+ D L L++ + ++ +Y+L+ +N+ + L
Sbjct: 260 INNIYNKKFYSIIDNL-------LIKSKKYLK-----IFKYQLLNINRNIYNNITLLLNN 307
Query: 366 ESFFGL-------HPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHY 418
+ + + +PL Q D+ N L++I K++ + G + + +R++ +
Sbjct: 308 KKYINIILENININPLVQYSDQVNNLSEINQKFKINMITTGLNSKFILNNDLRELPRNIL 367
Query: 419 GRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYM 478
G I I+T+EG+ GL+ L + + + I +L L+ +Y
Sbjct: 368 GYISLINTNEGLTCGLVNYLTTNIFLNLKYLFVIYYKHIFYNRYNFKLL-LNIFNKNFYN 426
Query: 479 IATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
I+ N N + + + F Q + F++ S +LIPFI +ND
Sbjct: 427 ISFNNIYLKKNINFNKTTILTINKNTFKICNITQNIIYIPFNY-LLSFIENLIPFIHYND 485
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLF 598
+ R LMS M Q VP+ + T + L I+ EG +IY KI++
Sbjct: 486 SIRNLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISYQEGIVIYVSCIKIIIR 545
Query: 599 GS-GETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLV 657
+ L Y++ N+N + K V G+ + GQILA + + E SLG N+LV
Sbjct: 546 DLFNRQIIYYLNNYKKINQNILLIYKPIVWVGEKVNIGQILAINSNLLNSEYSLGNNLLV 605
Query: 658 AYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLL 717
Y + GY EDA++IS +++Y ++YTS H+ YEI ++ +N PE + + + +
Sbjct: 606 GYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYEISLNIINNIPEICSINLSKMYYKNI 665
Query: 718 RNLDKNGLVILGSWVEAGDILVGKL--TPQMAKESSYAPEDRLLRAILGIQVSTSKETCL 775
++LDK G++ G+++ A +IL+ KL P + S ++ + G ++ K +
Sbjct: 666 KHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLI---NIINFLFGSKLRIFKNKPI 722
Query: 776 KLPIGGRGRVIDV----RWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVS 831
I GRVI + L+ K IYI ++ +++GDK+ RHG+KGI+S
Sbjct: 723 ISTIHDIGRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLGDKICNRHGHKGIIS 782
Query: 832 KILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIA-PFDER 890
I D+PYL + D+ + + +PSR+N+GQIFE GL L+ Y I+ ++
Sbjct: 783 YISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFEGIYGLNSLYLNTRYIISNNLNKN 842
Query: 891 YEQEASR-----KLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNP 945
Y + K ++ + + + S + K + + TG + + N
Sbjct: 843 YYNNYNHIFNYYKYNYNNNFNINSKMSYNY-------NKYYLKNPFTGNMINNSICLNNI 895
Query: 946 YILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEM 1005
Y KLIH + DK R G Y+ +TQQP+KG KQGGQR GEMEVWALE FG +++ +E
Sbjct: 896 YYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWALEAFGASYLFKEF 955
Query: 1006 LTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFLV 1058
TYKSD IK+R ++L + K E+F+L+++EL+SLA+ + F +
Sbjct: 956 FTYKSDDIKSR-KILKNYLFNNYKIKNTFISETFKLILKELQSLAINIEAFCI 1007
>emb|CAA36427.1| (X52177) RNA polymerase beta subunit (697 AA) [Plasmodium falciparum]
Length = 697
Score = 272 bits (689), Expect = 1e-71
Identities = 203/693 (29%), Positives = 338/693 (48%), Gaps = 26/693 (3%)
Query: 379 DRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSL 438
D+ N L++I K++ + G + + +R++ + G I I+T+EG+ GL+ L
Sbjct: 1 DQVNNLSEINQKFKINMITTGLNSKFILNNDLRELPRNILGYISLINTNEGLTCGLVNYL 60
Query: 439 AIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVP 498
+ + + I +L L+ +Y I+ N N + +
Sbjct: 61 TTNIFLNLKYLFVIYYKHIFYNRYNFKLL-LNIFNKNFYNISFNNIYLKKNINFNKTTIL 119
Query: 499 ARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQS 558
+ F Q + F++ S +LIPFI +ND+ R LMS M Q VP+
Sbjct: 120 TINKNTFKICNITQNIIYIPFNY-LLSFIENLIPFIHYNDSIRNLMSIKMHTQIVPIIYP 178
Query: 559 EKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGS-GETLSVPLVIYRRSNKN 617
+ T + L I+ EG +IY KI++ + L Y++ N+N
Sbjct: 179 NLSNIITNYNFILNKYLNHLIISYQEGIVIYVSCIKIIIRDLFNRQIIYYLNNYKKINQN 238
Query: 618 TCMHQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRL 677
+ K V G+ + GQILA + + E SLG N+LV Y + GY EDA++IS ++
Sbjct: 239 ILLIYKPIVWVGEKVNIGQILAINSNLLNSEYSLGNNLLVGYGSYLGYEYEDAIIISRKI 298
Query: 678 VYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDI 737
+Y ++YTS H+ YEI ++ +N PE + + + +++LDK G++ G+++ A +I
Sbjct: 299 LYNNLYTSLHLNIYEISLNIINNIPEICSINLSKMYYKNIKHLDKYGIIKEGTYILANNI 358
Query: 738 LVGKL--TPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDV----RWL 791
L+ KL P + S ++ + G ++ K + I GRVI + L
Sbjct: 359 LISKLMFMPFIFNNKSLI---NIINFLFGSKLRIFKNKPIISTIHDIGRVIKIEILPNHL 415
Query: 792 HKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMV 851
+ K IYI ++ +++GDK+ RHG+KGI+S I D+PYL + D+
Sbjct: 416 YNKTEKNNIYLKFRIYIGIQKYLQLGDKICNRHGHKGIISYISEINDIPYLNNKIQPDIF 475
Query: 852 FNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIA-PFDERYEQEASR-----KLVFSELY 905
+ + +PSR+N+GQIFE GL L+ Y I+ ++ Y + K ++ +
Sbjct: 476 ISAISIPSRINIGQIFEGIYGLNSLYLNTRYIISNNLNKNYYNNYNHIFNYYKYNYNNNF 535
Query: 906 QASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGH 965
+ + S + K + + TG + + N Y KLIH + DK R G
Sbjct: 536 NINSKMSYNY-------NKYYLKNPFTGNMINNSICLNNIYYYKLIHMIKDKFRYRFIGL 588
Query: 966 YALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTII 1025
Y+ +TQQP+KG KQGGQR GEMEVWALE FG +++ +E TYKSD IK+R ++L +
Sbjct: 589 YSELTQQPIKGNTKQGGQRFGEMEVWALEAFGASYLFKEFFTYKSDDIKSR-KILKNYLF 647
Query: 1026 GGTISKPVDAPESFRLLVRELRSLALELNHFLV 1058
K E+F+L+++EL+SLA+ + F +
Sbjct: 648 NNYKIKNTFISETFKLILKELQSLAINIEAFCI 680
>pir||S26872 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Chlamydomonas
reinhardtii chloroplast
Length = 822
Score = 265 bits (671), Expect = 2e-69
Identities = 142/378 (37%), Positives = 216/378 (56%), Gaps = 29/378 (7%)
Query: 250 KFFQQRC-ELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNH 308
KF R +LG++GR N NR+L L I Q+ T L P+D+L A ++LI + + LDD++H
Sbjct: 442 KFMNPRTYDLGKVGRVNFNRKLKLSISQDITTLTPQDLLAATNNLILVSKGLRELDDIDH 501
Query: 309 LKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQ--------------- 353
LKN+R+R+ +L+Q Q G+ LVRLE +R + A +P+ +
Sbjct: 502 LKNRRVRTSGELIQIQIGVGLVRLEKTIREKMTYASGLSSLPSQKFAFRSSKQRNQSPVG 561
Query: 354 -----------NLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLT 402
NL+ + P FFG PLSQ +D+ NPL ++ H R+LS +GPGG+T
Sbjct: 562 DAENATQLTIGNLINTKPFNGALREFFGTSPLSQFMDQINPLAELTHKRRLSSMGPGGVT 621
Query: 403 GRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEI--SER 460
+A+ IR IH SHYGRICP++T EG N GL+ SL +AR+ G IE+PF+ + +
Sbjct: 622 RDSATLAIRGIHPSHYGRICPVETPEGKNTGLVNSLTAYARVNAAGYIETPFYRVYKGQV 681
Query: 461 SKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
K+ + + S ++E + + G + +P R ++F I+ ++ +
Sbjct: 682 QKKTGLYFFSAKQEEKIKLGAPDLYTSEIGFLPKASIPVRIVEDFTKISRNEIQYVGVAP 741
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q SI SLIPF EH+DANRALM SNMQRQAVP+ + ++ IVGTGLE + DSG +
Sbjct: 742 IQMISIATSLIPFFEHDDANRALMGSNMQRQAVPILKPQRPIVGTGLEARAVSDSGHVIT 801
Query: 581 AEHEGKIIYKDTNKIVLF 598
A+ G ++Y + +I+++
Sbjct: 802 AKSSGIVMYTSSKEIIIY 819
Score = 109 bits (271), Expect = 1e-22
Identities = 64/205 (31%), Positives = 110/205 (53%), Gaps = 11/205 (5%)
Query: 17 QIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTY 76
+IQ F +++G+ EE K I ++ + +E + + YQL P A+ +S +Y
Sbjct: 129 EIQRNSFFTLLEKGIIEEFSKRNPITNSKKTMEIFFYPDYYQLTPPEYSPSQAIIKSKSY 188
Query: 77 SSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQ- 135
+S+LY+ L K+ I+ + ++IG+IPLM G I+NG R+++NQ+++SPGIYYQ
Sbjct: 189 TSKLYIPVQLTDKSKNIIKLKWVYIGDIPLMTKRGHFILNGCARVIVNQMVRSPGIYYQK 248
Query: 136 ----------SELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSS 185
SE + Y +I + G L +E+D+ +IWA++ R KI I+
Sbjct: 249 KIYENFSNKWSEKPENTFTRYFADLICNRGTWLRIEMDKYNKIWAQMKRVPKIPIMWFLI 308
Query: 186 AMGSNLNEILENVCYPEIFLSFLND 210
A+G +L+ V +I L L++
Sbjct: 309 AVGLTDKIVLKTVMDSKILLYNLDE 333
>emb|CAC14805.1| (AJ270501) RNA polymerase beta subunit [Neisseria meningitidis]
Length = 342
Score = 255 bits (644), Expect = 2e-66
Identities = 129/313 (41%), Positives = 198/313 (63%), Gaps = 2/313 (0%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAI 344
DI+ + L+ ++ G +DD++HL N+R+RSV +L ++QF L R+E V+ + A
Sbjct: 20 DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAE 79
Query: 345 RYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGR 404
L+P +L+ + P++ + FFG LSQ +D+TNPL+++ H R++S LGPGGLT
Sbjct: 80 SENLMP--HDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRE 137
Query: 405 TASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRI 464
A F +RD+H +HYGR+CPI+T EG N+GLI SL+++AR +G +E+P+ + +
Sbjct: 138 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTE 197
Query: 465 HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYF 524
+ YLS + Y+IA N + GN +V R + E + ++V + + Q
Sbjct: 198 EIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVV 257
Query: 525 SIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHE 584
S+ ASLIPF+EH+DANRALM +NMQRQAVP + EK +VGTG+ER VA+DS T +A
Sbjct: 258 SVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSATAIVARRG 317
Query: 585 GKIIYKDTNKIVL 597
G + Y D N++V+
Sbjct: 318 GVVEYVDANRVVI 330
>emb|CAC14804.1| (AJ270500) RNA polymerase beta subunit [Neisseria meningitidis]
emb|CAC14807.1| (AJ270503) RNA polymerase beta subunit [Neisseria meningitidis]
emb|CAC14808.1| (AJ270504) RNA polymerase beta subunit [Neisseria meningitidis]
Length = 342
Score = 255 bits (644), Expect = 2e-66
Identities = 129/313 (41%), Positives = 198/313 (63%), Gaps = 2/313 (0%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAI 344
DI+ + L+ ++ G +DD++HL N+R+RSV +L ++QF L R+E V+ + A
Sbjct: 20 DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAE 79
Query: 345 RYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGR 404
L+P +L+ + P++ + FFG LSQ +D+TNPL+++ H R++S LGPGGLT
Sbjct: 80 SENLMP--HDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRE 137
Query: 405 TASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRI 464
A F +RD+H +HYGR+CPI+T EG N+GLI SL+++AR +G +E+P+ + +
Sbjct: 138 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTE 197
Query: 465 HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYF 524
+ YLS + Y+IA N + GN +V R + E + ++V + + Q
Sbjct: 198 EIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVV 257
Query: 525 SIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHE 584
S+ ASLIPF+EH+DANRALM +NMQRQAVP + EK +VGTG+ER VA+DS T +A
Sbjct: 258 SVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSATAIVARRG 317
Query: 585 GKIIYKDTNKIVL 597
G + Y D N++V+
Sbjct: 318 GVVEYVDANRVVI 330
>emb|CAC14806.1| (AJ270502) RNA polymerase beta subunit [Neisseria meningitidis]
Length = 342
Score = 253 bits (640), Expect = 7e-66
Identities = 128/313 (40%), Positives = 199/313 (62%), Gaps = 2/313 (0%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAI 344
DI+ + L+ ++ G +DD++HL N+R+RSV +L+++QF L R+E V+ + A
Sbjct: 20 DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELIENQFRSGLARVERAVKERLNQAE 79
Query: 345 RYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGR 404
L+P +L+ + P++ + FFG LSQ +D+TNPL+++ + R++S LGPGGLT
Sbjct: 80 SENLMP--HDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTNKRRVSALGPGGLTRE 137
Query: 405 TASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRI 464
A F +RD+H +HYGR+CPI+T EG N+GLI SL+++AR +G +E+P+ + +
Sbjct: 138 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTE 197
Query: 465 HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYF 524
+ YLS + Y+IA N + GN +V R + E + ++V + + Q
Sbjct: 198 EIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVV 257
Query: 525 SIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHE 584
S+ ASLIPF+EH+DANRALM +NMQRQAVP + EK +VGTG+ER VA+DS T +A
Sbjct: 258 SVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSATAIVARRG 317
Query: 585 GKIIYKDTNKIVL 597
G + Y D N++V+
Sbjct: 318 GVVEYVDANRVVI 330
>emb|CAC14802.1| (AJ270498) RNA polymerase beta subunit [Neisseria meningitidis]
emb|CAC14803.1| (AJ270499) RNA polymerase beta subunit [Neisseria meningitidis]
Length = 342
Score = 252 bits (638), Expect = 1e-65
Identities = 128/313 (40%), Positives = 198/313 (62%), Gaps = 2/313 (0%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAI 344
DI+ + L+ ++ G +DD++HL N+R+RSV +L ++QF L R+E V+ + A
Sbjct: 20 DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAE 79
Query: 345 RYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGR 404
L+P +L+ + P++ + FFG LSQ +D+TNPL+++ + R++S LGPGGLT
Sbjct: 80 SENLMP--HDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTYKRRVSALGPGGLTRE 137
Query: 405 TASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRI 464
A F +RD+H +HYGR+CPI+T EG N+GLI SL+++AR +G +E+P+ + +
Sbjct: 138 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTE 197
Query: 465 HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYF 524
+ YLS + Y+IA N + GN +V R + E + ++V + + Q
Sbjct: 198 EIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVV 257
Query: 525 SIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHE 584
S+ ASLIPF+EH+DANRALM +NMQRQAVP + EK +VGTG+ER VA+DS T +A
Sbjct: 258 SVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSATAIVARRG 317
Query: 585 GKIIYKDTNKIVL 597
G + Y D N++V+
Sbjct: 318 GVVEYVDANRVVI 330
>emb|CAC14799.1| (AJ270495) RNA polymerase beta subunit [Neisseria meningitidis]
emb|CAC14800.1| (AJ270496) RNA polymerase beta subunit [Neisseria meningitidis]
emb|CAC14801.1| (AJ270497) RNA polymerase beta subunit [Neisseria meningitidis]
Length = 342
Score = 250 bits (631), Expect = 8e-65
Identities = 127/313 (40%), Positives = 196/313 (62%), Gaps = 2/313 (0%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAI 344
DI+ + L+ ++ G +DD++HL N+R+RSV +L ++QF L R+E V+ + A
Sbjct: 20 DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAE 79
Query: 345 RYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGR 404
L+P +L+ + P++ + FFG LSQ + +TNPL+++ H R++S LGPGGLT
Sbjct: 80 SENLMP--HDLINAKPVSAAIKEFFGSSQLSQFMVQTNPLSEVTHKRRVSALGPGGLTRE 137
Query: 405 TASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRI 464
A F +RD+H +HYGR+CPI+T EG N+GLI SL+++AR +G +E+P+ + +
Sbjct: 138 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTE 197
Query: 465 HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYF 524
+ YLS + Y+IA N + GN +V R + E + ++V + + Q
Sbjct: 198 EIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVV 257
Query: 525 SIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHE 584
S+ SLIPF+EH+DANRALM +NMQRQAVP + EK +VGTG+ER VA+DS T +A
Sbjct: 258 SVAVSLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSATAIVARRG 317
Query: 585 GKIIYKDTNKIVL 597
G + Y D N++V+
Sbjct: 318 GVVEYVDANRVVI 330
>emb|CAC14798.1| (AJ270494) RNA polymerase beta subunit [Neisseria meningitidis]
Length = 342
Score = 249 bits (630), Expect = 1e-64
Identities = 127/313 (40%), Positives = 197/313 (62%), Gaps = 2/313 (0%)
Query: 285 DILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAI 344
DI+ + L+ ++ G +DD++HL N+R+RSV +L ++QF L R+E V+ + A
Sbjct: 20 DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAE 79
Query: 345 RYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGR 404
L+P +L+ + P++ + FFG LSQ + +TNPL+++ H R++S LGPGGLT
Sbjct: 80 SENLMP--HDLINAKPVSAAIKEFFGSSQLSQFMVQTNPLSEVTHKRRVSALGPGGLTRE 137
Query: 405 TASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRI 464
A F +R++H +HYGR+CPI+T EG N+GLI SL+++AR +G +E+P+ + +
Sbjct: 138 RAGFEVRNVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDGKVTE 197
Query: 465 HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYF 524
+ YLS + Y+IA N + GN +V R + E + ++V + + Q
Sbjct: 198 EIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDVATGQVV 257
Query: 525 SIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHE 584
S+ ASLIPF+EH+DANRALM +NMQRQAVP + EK +VGTG+ER VA+DS T +A
Sbjct: 258 SVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSATAIVARRG 317
Query: 585 GKIIYKDTNKIVL 597
G + Y D N++V+
Sbjct: 318 GVVEYVDANRVVI 330
>prf||1411173A RNA polymerase beta [Pseudomonas putida]
Length = 287
Score = 240 bits (606), Expect = 7e-62
Identities = 123/285 (43%), Positives = 182/285 (63%), Gaps = 2/285 (0%)
Query: 303 LDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLT 362
+DD++HL N+R+R V ++ ++QF + LVR+E V+ + A L+P Q+L+ + P+
Sbjct: 1 VDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMP--QDLINAKPVA 58
Query: 363 TTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRIC 422
+ FFG LSQ +D+ NPL++I H R+ S LGPGGLT A F +RD+H +HYGR+C
Sbjct: 59 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRCSALGPGGLTRERAGFEVRDVHPTHYGRVC 118
Query: 423 PIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATG 482
PI+T EG N+GLI SLA +AR ++G +ESP+ + E +++LS + ++IA
Sbjct: 119 PIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGVVSDDIVFLSAIEEADHVIAQA 178
Query: 483 NYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRA 542
+ ++ +++V R+ EF A E V L + Q S+ ASLIPF+EH+DANRA
Sbjct: 179 SAAMNDKHQLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRA 238
Query: 543 LMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKI 587
LM SNMQRQAVP +++K +VGTG+ER VA DSG + G I
Sbjct: 239 LMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVRRRGGVI 283
>pir||S77830 probable DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Mycoplasma capricolum
emb|CAA83749.1| (Z33085) DNA-directed RNA polymerase (beta) [Mycoplasma capricolum]
Length = 356
Score = 236 bits (597), Expect = 8e-61
Identities = 125/329 (37%), Positives = 198/329 (59%), Gaps = 2/329 (0%)
Query: 457 ISERSKRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLR 516
+ E K I YL+ +++ ++IA N G ++I+ +R+ + E++H
Sbjct: 18 LMELFKTIKFEYLTADQEKNFIIAQSNVNQDENGKILDEIIVSRFNGDDYMAKVEEIHYI 77
Query: 517 SIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSG 576
+ Q S+ S IPF+E++DANRALM +NMQRQAVPL + E IV TG+E + A DSG
Sbjct: 78 DVSPKQIVSVATSGIPFLENDDANRALMGANMQRQAVPLIKPESPIVATGIEFEAARDSG 137
Query: 577 TLAIAEHEGKIIYKDTNKIVLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQ 636
+A+ + + Y D+ I+ G + L Y RSN T + Q V+ G +K+G+
Sbjct: 138 EAIVAKEDAIVKYVDSKTIITDGESGIRTYILSDYERSNNGTSLTQSPIVKVGDVVKKGE 197
Query: 637 ILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTH 696
I+ADG + GEL++G+NV+VA+ + GYN EDA+++S+R+V +D +TS HI +Y ++
Sbjct: 198 IIADGPSMDQGELAIGQNVVVAFSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVR 257
Query: 697 VTSNGPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPED 756
T G E +T +IP++ R+LD G+V +G+ V+ GD+LVGK+TP+ + +PED
Sbjct: 258 NTKQGQEEVTREIPNMSEQAKRHLDAEGIVAIGTEVKVGDVLVGKVTPK--GQVQLSPED 315
Query: 757 RLLRAILGIQVSTSKETCLKLPIGGRGRV 785
+LL AI G + K+ L++P GG G V
Sbjct: 316 KLLHAIFGEKSRNVKDNSLRVPNGGEGLV 344
>emb|CAB36987.1| (AJ236789) RNA polymerase beta subunit [Streptococcus pneumoniae]
Length = 400
Score = 235 bits (592), Expect = 3e-60
Identities = 116/315 (36%), Positives = 192/315 (60%), Gaps = 4/315 (1%)
Query: 283 PRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICG 342
P DIL + + + +G +DD++HL N+RIR+V +LL +Q L L R+E VR +
Sbjct: 75 PADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERM-- 132
Query: 343 AIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLT 402
+++ + TPQ ++ P+T + FFG LSQ +D+ NPL+++ H R+LS LGPGGLT
Sbjct: 133 SVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLT 192
Query: 403 GRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSK 462
A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + + ++G +++P+ ++ +
Sbjct: 193 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRATG 252
Query: 463 RI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
+ +++L+ ++ Y +A N G E++V R++ V +
Sbjct: 253 EVTNEIVWLTADEEDEYTVAQANSKLNADGTFAEKVVMGRHQGVNQEYPASSVDYMDVSP 312
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q ++ + IPF+E++D+NRALM +NMQRQAVPL + VGTG+E Q A DSG I
Sbjct: 313 KQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPFVGTGMEYQAAHDSGAAVI 372
Query: 581 AEHEGKIIYKDTNKI 595
A+++GK+ Y D +K+
Sbjct: 373 AQYDGKVTYADADKV 387
>gb|AAF08836.1| (AF194512) RNA polymerase beta subunit [Streptococcus constellatus]
Length = 290
Score = 233 bits (589), Expect = 7e-60
Identities = 114/290 (39%), Positives = 182/290 (62%), Gaps = 3/290 (1%)
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ H R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + +
Sbjct: 1 SELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL 60
Query: 445 GRWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYR 502
++G I++P+ ++ + + +++L+ ++ Y++A N G + IV R++
Sbjct: 61 NKYGFIQTPYRKVDRETGLVTNEIVWLTADEEDEYIVAQANSKLTEDGRFAKAIVMGRHQ 120
Query: 503 QEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCI 562
+QV + Q ++ + IPF+E++D+NRALM +NMQRQAVPL
Sbjct: 121 GNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHAPY 180
Query: 563 VGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCMH 621
VGTG+E Q A DSG IA+H+GK++Y D K+ + +L V + +RRSN TC +
Sbjct: 181 VGTGMEYQAAHDSGAAIIAQHDGKVVYSDAAKVEVRREDGSLDVYHITKFRRSNSGTCYN 240
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
Q++ V+ G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 241 QRTLVKVGDTVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAV 290
>emb|CAB36989.1| (AJ236791) RNA polymerase beta subunit [Streptococcus pneumoniae]
Length = 400
Score = 232 bits (585), Expect = 2e-59
Identities = 115/315 (36%), Positives = 192/315 (60%), Gaps = 4/315 (1%)
Query: 283 PRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICG 342
P DIL + + + +G +DD++HL N+RIR+V +LL +Q L L R+E VR +
Sbjct: 75 PADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERM-- 132
Query: 343 AIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLT 402
+++ + TPQ ++ P+T + FFG LSQ +D+ NPL+++ + R+LS LGPGGLT
Sbjct: 133 SVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSNKRRLSALGPGGLT 192
Query: 403 GRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSK 462
A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + + ++G +++P+ ++ +
Sbjct: 193 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRATG 252
Query: 463 RI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
+ +++L+ ++ Y +A N G E++V R++ V +
Sbjct: 253 EVTNEIVWLTADEEDEYTVAQANSKLNADGTFAEKVVMGRHQGVNQEYPASSVDYMDVSP 312
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q ++ + IPF+E++D+NRALM +NMQRQAVPL + VGTG+E Q A DSG I
Sbjct: 313 KQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPFVGTGMEYQAAHDSGAAVI 372
Query: 581 AEHEGKIIYKDTNKI 595
A+++GK+ Y D +K+
Sbjct: 373 AQYDGKVTYADADKV 387
>emb|CAB36990.1| (AJ236792) RNA polymerase beta subunit [Streptococcus pneumoniae]
Length = 400
Score = 231 bits (584), Expect = 3e-59
Identities = 116/315 (36%), Positives = 193/315 (60%), Gaps = 4/315 (1%)
Query: 283 PRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICG 342
P DIL + + + +G +DD++HL N+RIR+V +LL +Q L L R+E VR +
Sbjct: 75 PADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERM-- 132
Query: 343 AIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLT 402
+++ + TPQ+++ P+T + FFG LSQ +D+ NPL+++ + R+LS LGPGGLT
Sbjct: 133 SVQDNEVLTPQHIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSNKRRLSALGPGGLT 192
Query: 403 GRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSK 462
A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + + ++G +++P+ ++ +
Sbjct: 193 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRETG 252
Query: 463 RI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
+ +++L+ ++ Y +A N G E+IV R++ V +
Sbjct: 253 VVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRHQGVNQEYPANIVDYMDVSP 312
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q ++ + IPF+E++D+NRALM +NMQRQAVPL + VGTG+E Q A DSG I
Sbjct: 313 KQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPYVGTGMEYQAAHDSGAAVI 372
Query: 581 AEHEGKIIYKDTNKI 595
A+++GK+ Y D +K+
Sbjct: 373 AQYDGKVTYADADKV 387
>gb|AAF08834.1| (AF194510) RNA polymerase beta subunit [Streptococcus anginosus]
Length = 290
Score = 230 bits (580), Expect = 8e-59
Identities = 113/290 (38%), Positives = 182/290 (61%), Gaps = 3/290 (1%)
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ H R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + +
Sbjct: 1 SELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL 60
Query: 445 GRWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYR 502
++G I++P+ +++ + + +++L+ ++ +++A N G E IV R++
Sbjct: 61 NKYGFIQTPYRKVNRETGLVTNEIVWLTADEEDEFIVAQANSKLTEDGRFAEAIVMGRHQ 120
Query: 503 QEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCI 562
+QV + Q ++ + IPF+E++D+NRALM +NMQRQAVPL
Sbjct: 121 GNNQEFPSDQVDFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHAPY 180
Query: 563 VGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCMH 621
VGTG+E Q A DSG IA+H+GK++Y D K+ + +L V + +RRSN T +
Sbjct: 181 VGTGMEYQAAHDSGAADIAQHDGKVVYSDAAKVEVRREDGSLDVYHITKFRRSNSGTSYN 240
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
Q++ V+ G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 241 QRTLVKVGDTVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAV 290
>gb|AAF08844.1| (AF194522) RNA polymerase beta subunit [Streptococcus
parasanguinis]
Length = 290
Score = 229 bits (579), Expect = 1e-58
Identities = 116/291 (39%), Positives = 186/291 (63%), Gaps = 5/291 (1%)
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ H R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + +
Sbjct: 1 SELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL 60
Query: 445 GRWGSIESPFFEISERSKRI---HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARY 501
++G I++P+ ++ +R K + +++L+ ++ Y++A N +G E IV R+
Sbjct: 61 NKYGFIQTPYRKV-DREKGVVTNEIVWLTADEEDEYIVAQANSKLNEEGGFAEPIVMGRH 119
Query: 502 RQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKC 561
R +QV ++ Q ++ + IPF+E++D+NRALM +NMQRQAVPL +
Sbjct: 120 RGNNQEFPSDQVDYMAVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAP 179
Query: 562 IVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCM 620
VGTG+E Q A DSG IA+++GK+ Y D +K+ + +L V + +RRSN T
Sbjct: 180 YVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVKVCREDGSLDVYHIQKFRRSNSGTGY 239
Query: 621 HQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
+Q++ V+ G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 240 NQRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAV 290
>gb|AAF08852.1| (AF194516) RNA polymerase beta subunit [Streptococcus intermedius]
Length = 290
Score = 228 bits (576), Expect = 2e-58
Identities = 113/284 (39%), Positives = 178/284 (61%), Gaps = 3/284 (1%)
Query: 391 RKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSI 450
R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + + ++G I
Sbjct: 7 RRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFI 66
Query: 451 ESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTI 508
++P+ ++ ++ + +++L+ ++ Y++A N G E IV R++
Sbjct: 67 QTPYRKVDRKAGIVTNEIVWLTADEEDEYIVAQANSKLTENGRFAEAIVMGRHQGNNQEF 126
Query: 509 AWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLE 568
+QV + Q ++ + IPF+E++D+NRALM +NMQRQAVPL VGTG+E
Sbjct: 127 PSDQVDFMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHAPYVGTGME 186
Query: 569 RQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCMHQKSQVQ 627
Q A DSG IA+H+GK++Y D K+ + +L V + +RRSN T +Q++ V+
Sbjct: 187 YQAAHDSGAAIIAQHDGKVVYSDAAKVEVRREDGSLDVYHITKFRRSNSGTSYNQRTLVK 246
Query: 628 RGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 247 VGDTVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAV 290
>gb|AAF08850.1| (AF194528) RNA polymerase beta subunit [Streptococcus sanguinis]
Length = 290
Score = 228 bits (575), Expect = 3e-58
Identities = 113/290 (38%), Positives = 183/290 (62%), Gaps = 3/290 (1%)
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ H R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + +
Sbjct: 1 SELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL 60
Query: 445 GRWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYR 502
++G I++P+ ++ + + +++L+ ++ +++A N +G E IV R++
Sbjct: 61 NKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGRHQ 120
Query: 503 QEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCI 562
+QV + Q ++ + IPF+E++D+NRALM +NMQRQAVPL +
Sbjct: 121 GNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPY 180
Query: 563 VGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCMH 621
VGTG+E Q A DSG IA+H+GK+ Y D +K+ + +L V + +RRSN T +
Sbjct: 181 VGTGMEYQAAHDSGAAVIAQHDGKVTYADPDKVEVRREDGSLDVYQIQKFRRSNSGTSYN 240
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
Q++ V+ G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 241 QRTLVKVGDTVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAV 290
>gb|AAF08838.1| (AF194514) RNA polymerase beta subunit [Streptococcus cristatus]
Length = 290
Score = 227 bits (572), Expect = 7e-58
Identities = 112/290 (38%), Positives = 183/290 (62%), Gaps = 3/290 (1%)
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ H R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + +
Sbjct: 1 SELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL 60
Query: 445 GRWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYR 502
++G I++P+ ++ + + +++L+ ++ +++A N +G E IV R++
Sbjct: 61 NKYGFIQTPYRKVDREAGVVTNEIVWLTADEEDEFIVAQANSKLNEKGGFAEPIVMGRHQ 120
Query: 503 QEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCI 562
+QV + Q ++ + IPF+E++D+NRALM +NMQRQAVPL +
Sbjct: 121 GNNQEFPSDQVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAPY 180
Query: 563 VGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCMH 621
VGTG+E Q A DSG IA+++GK+ Y D +K+ + +L V + +RRSN T +
Sbjct: 181 VGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAYN 240
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
Q++ V+ G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 241 QRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAV 290
>emb|CAB36988.1| (AJ236790) RNA polymerase beta subunit [Streptococcus pneumoniae]
Length = 400
Score = 227 bits (572), Expect = 7e-58
Identities = 112/315 (35%), Positives = 192/315 (60%), Gaps = 4/315 (1%)
Query: 283 PRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICG 342
P DIL + + + +G +DD++HL N+RIR+V +LL +Q L L R+E R +
Sbjct: 75 PADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNARERM-- 132
Query: 343 AIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLT 402
+++ + TPQ+++ P+T + FFG LSQ +++ NPL+++ + R+LS LGPGGLT
Sbjct: 133 SVQDNEVLTPQHIINIRPVTAAVKEFFGSSQLSQFMEQHNPLSELSNKRRLSALGPGGLT 192
Query: 403 GRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSK 462
A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + + ++G +++P+ ++ +
Sbjct: 193 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRETG 252
Query: 463 RI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
+ +++L+ ++ + +A N G E++V R++ V +
Sbjct: 253 VVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGRHQGVNQEYPANVVDYMDVSP 312
Query: 521 FQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAI 580
Q ++ + IPF+E++D+NRALM +NMQRQAVPL + VGTG+E Q A DSG I
Sbjct: 313 KQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPYVGTGMEYQAAHDSGAAVI 372
Query: 581 AEHEGKIIYKDTNKI 595
A+++GK+ Y D +K+
Sbjct: 373 AQYDGKVTYADADKV 387
>gb|AAF08846.1| (AF194524) RNA polymerase beta subunit [Streptococcus pneumoniae]
Length = 290
Score = 223 bits (562), Expect = 1e-56
Identities = 111/290 (38%), Positives = 180/290 (61%), Gaps = 3/290 (1%)
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ H R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + +
Sbjct: 1 SELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL 60
Query: 445 GRWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYR 502
++G +++P+ ++ + + +++L+ ++ Y +A N G E+IV R++
Sbjct: 61 NKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRHQ 120
Query: 503 QEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCI 562
V + Q ++ + IPF+E++D+NRALM +NMQRQAVPL +
Sbjct: 121 GVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPY 180
Query: 563 VGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCMH 621
VGTG+E Q A DSG IA+++GK+ Y D +K+ + +L V + +RRSN T +
Sbjct: 181 VGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAYN 240
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
Q++ V+ G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 241 QRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAV 290
>gb|AAF80844.1| (AF165988) RNA polymerase beta subunit [Bartonella bacilliformis]
Length = 275
Score = 222 bits (561), Expect = 1e-56
Identities = 113/246 (45%), Positives = 156/246 (62%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I++ ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKITDGKVTTEVVYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N ++G E+ V R+ E L + + + L + Q S+ ASLI
Sbjct: 135 MEEAKHYVAQANSSLDSEGRFTEEFVVCRHAGEVLMVPRDHIDLMDVSPKQLVSVAASLI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL +SE VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLIRSEAPFVGTGMEAIVARDSGAAISAKRGGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAF08842.1| (AF194520) RNA polymerase beta subunit [Streptococcus oralis]
Length = 290
Score = 222 bits (561), Expect = 1e-56
Identities = 111/290 (38%), Positives = 181/290 (62%), Gaps = 3/290 (1%)
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ + R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + +
Sbjct: 1 SELSYKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL 60
Query: 445 GRWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYR 502
++G +++P+ ++ + + +++L+ ++ + +A N G E++V R++
Sbjct: 61 NKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEFTVAQANSRLNEDGTFAEKVVMGRHQ 120
Query: 503 QEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCI 562
E V + Q ++ + IPF+E+ND+NRALM +NMQRQAVPL +
Sbjct: 121 GVNQEYPAEVVDYMDVSPKQVVAVATACIPFLENNDSNRALMGANMQRQAVPLIDPKAPY 180
Query: 563 VGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCMH 621
VGTGLE Q A DSG IA+++GK+ Y D +K+ + +L V + +RRSN T +
Sbjct: 181 VGTGLEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAYN 240
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
Q++ V+ G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 241 QRTLVKVGDVVEKGDFIADGPSMEKGEMALGQNPIVAYMTWEGYNFEDAV 290
>gb|AAF08848.1| (AF194526) RNA polymerase beta subunit [Streptococcus pneumoniae]
Length = 290
Score = 220 bits (556), Expect = 5e-56
Identities = 110/290 (37%), Positives = 180/290 (61%), Gaps = 3/290 (1%)
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ + R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + +
Sbjct: 1 SELSYKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL 60
Query: 445 GRWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYR 502
++G +++P+ ++ + + +++L+ ++ Y +A N G E+IV R++
Sbjct: 61 NKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRHQ 120
Query: 503 QEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCI 562
V + Q ++ + IPF+E++D+NRALM +NMQRQAVPL +
Sbjct: 121 GVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPY 180
Query: 563 VGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCMH 621
VGTG+E Q A DSG IA+++GK+ Y D +K+ + +L V + +RRSN T +
Sbjct: 181 VGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAYN 240
Query: 622 QKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
Q++ V+ G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 241 QRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAV 290
>gb|AAF87050.1|AF171071_1 (AF171071) RNA polymerase beta subunit [Bartonella henselae]
Length = 275
Score = 219 bits (553), Expect = 1e-55
Identities = 112/246 (45%), Positives = 152/246 (61%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTTEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N +G E+ V R+ E L + V L + Q S+ A+LI
Sbjct: 135 MEESKHYVAQANSSLDAEGRLSEEFVVCRHAGEVLMAPRDHVDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG A G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESIVARDSGAAVAARRSGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAF80849.1|AF165993_1 (AF165993) RNA polymerase beta subunit [Bartonella grahamii]
Length = 275
Score = 219 bits (552), Expect = 1e-55
Identities = 112/246 (45%), Positives = 154/246 (62%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIVDGKVTKEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N ++G E+ V R+ E L + V L + Q S+ A+LI
Sbjct: 135 MEEAKHYVAQANSSLDSEGRFTEEFVVCRHAGEVLMAPRDHVDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAIVARDSGAAVSAKRSGVVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAF08832.1| (AF194508) RNA polymerase beta subunit [Granulicatella adiacens]
Length = 290
Score = 219 bits (551), Expect = 2e-55
Identities = 113/289 (39%), Positives = 177/289 (61%), Gaps = 3/289 (1%)
Query: 386 QIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIG 445
++ + R+LS LGPGGLT A + +RD+H SHYGR+CPI+T EG N+GLI SL+ +A+I
Sbjct: 2 ELTYKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKIN 61
Query: 446 RWGSIESPFFEISERSKRI--HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQ 503
++G IE+P+ + + ++ + YL+ ++ +++A N G+ +V ARY
Sbjct: 62 KYGFIETPYRRVDWNTHKVTDKIDYLTADEEDSFVVAQANSPLNEDGSFVNDVVMARYVS 121
Query: 504 EFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIV 563
E L + E+V + Q ++ + IPF+E++D+NRALM +NMQRQAVPL + +
Sbjct: 122 ENLEVPVERVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLNPKAPFI 181
Query: 564 GTGLERQVALDSGTLAIAEHEGKIIYKDTNKI-VLFGSGETLSVPLVIYRRSNKNTCMHQ 622
GTG+E A DSG + + +G + + D ++ V G + + + SN C +Q
Sbjct: 182 GTGMEYVSAHDSGVALLCKRDGVVEFVDAKEVRVRTADGSLDTYHITKFHGSNAGMCYNQ 241
Query: 623 KSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
+ V +G + +G+ILADG + GEL+LG+NVLVA+M WEGY EDAV
Sbjct: 242 RPIVAQGDKVVKGEILADGPSMEKGELALGQNVLVAFMTWEGYIYEDAV 290
>gb|AAF80853.1|AF165997_1 (AF165997) RNA polymerase beta subunit [Bartonella vinsonii subsp.
vinsonii]
Length = 275
Score = 218 bits (550), Expect = 3e-55
Identities = 112/246 (45%), Positives = 153/246 (61%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTTEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N +G E+ V R+ E L + V L + Q S+ A+LI
Sbjct: 135 MEESKHYVAQANSSLDAEGRFTEEFVVCRHAGEVLMAPRDHVDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESVVARDSGAAVSAKRGGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAF80848.1|AF165992_1 (AF165992) RNA polymerase beta subunit [Bartonella elizabethae]
Length = 275
Score = 218 bits (550), Expect = 3e-55
Identities = 112/246 (45%), Positives = 154/246 (62%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTKEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N ++G E+ V R+ E L + V L + Q S+ A+LI
Sbjct: 135 MEEAKHYVAQANSSLDSEGRFIEEFVVCRHAGEVLMAPRDHVDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESVVARDSGAAVSAKRSGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAF80852.1|AF165996_1 (AF165996) RNA polymerase beta subunit [Bartonella tribocorum]
Length = 275
Score = 218 bits (549), Expect = 3e-55
Identities = 111/246 (45%), Positives = 154/246 (62%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTKEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + ++ N ++G E+ V R+ E L + V L + Q S+ A+LI
Sbjct: 135 MEEAKHYVSQANSSLDSEGRFTEEFVVCRHAGEVLMAPRDHVDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAVVARDSGAAVSAKRSGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAF80847.1|AF165991_1 (AF165991) RNA polymerase beta subunit [Bartonella doshiae]
Length = 275
Score = 218 bits (549), Expect = 3e-55
Identities = 112/246 (45%), Positives = 154/246 (62%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTTEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N ++G E+ V R+ E L + V L + Q S+ A+LI
Sbjct: 135 MEESKHYVAQANSSLDSEGRFTEEFVVCRHAGEVLMAPRDHVDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAIVARDSGAAIGAKRGGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAF80851.1|AF165995_1 (AF165995) RNA polymerase beta subunit [Bartonella taylorii]
Length = 275
Score = 217 bits (548), Expect = 4e-55
Identities = 112/246 (45%), Positives = 152/246 (61%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRRIIDGKVTTEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N +G E+ V R+ E L + V L + Q S+ A+LI
Sbjct: 135 MEESKHYVAQANSSLDAEGRFTEEFVVCRHAGEVLMAPRDHVDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESIVARDSGAAVSAKRGGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAF80843.1| (AF165987) RNA polymerase beta subunit [Bartonella alsatica]
Length = 275
Score = 217 bits (548), Expect = 4e-55
Identities = 112/246 (45%), Positives = 153/246 (61%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTTEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N +G E+ V R+ E L + V L + Q S+ A+LI
Sbjct: 135 MEESKHYVAQANSSLDVEGRFTEEFVVCRHAGEVLMAPRDHVDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLIRAEAPFVGTGMESIVARDSGAAVSAKRGGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAF80845.1|AF165989_1 (AF165989) RNA polymerase beta subunit [Bartonella vinsonii subsp.
berkhoffii]
Length = 275
Score = 217 bits (547), Expect = 6e-55
Identities = 112/246 (45%), Positives = 152/246 (61%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTTEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N +G E+ V R+ E L V L + Q S+ A+LI
Sbjct: 135 MEESKHYVAQANSSLDVEGRFTEEFVVCRHAGEVLMAPRNHVDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMESVVARDSGAAVSAKRGGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 ATRIVI 260
>gb|AAA25985.1| (M99386) RNA polymerase [Pseudomonas aeruginosa]
Length = 281
Score = 217 bits (546), Expect = 7e-55
Identities = 107/246 (43%), Positives = 157/246 (63%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P+ + FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +R
Sbjct: 15 PQDLINAKPVAAADKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGR+CPI+T EG N+GLI SLA +A ++G +ESP+ + + +++LS
Sbjct: 75 DVHPTHYGRVCPIETPEGPNIGLINSLATYAAPNKYGFLESPYRVVKDSLVTDEIVFLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ ++IA + +G +++V R+ EF A E L + Q S+ ASLI
Sbjct: 135 IEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDADLMDVSPKQVVSVAASLI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+EH+DANRALM SNMQRQAVP +++K +VGTG+ER VA DSG +A G I D
Sbjct: 195 PFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVD 254
Query: 592 TNKIVL 597
+++V+
Sbjct: 255 ASRVVV 260
>gb|AAF80846.1|AF165990_1 (AF165990) RNA polymerase beta subunit [Bartonella clarridgeiae]
Length = 275
Score = 215 bits (542), Expect = 2e-54
Identities = 111/246 (45%), Positives = 154/246 (62%)
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
PQ+L+ + P FFG LSQ +D+TNPL++I H R+LS LGPGGLT A F +R
Sbjct: 15 PQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVR 74
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
D+H +HYGRICPI+T EG N+GLI SLA AR+ ++G IESP+ +I + ++YLS
Sbjct: 75 DVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIVDGRVTKEVIYLSA 134
Query: 472 SRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
+ + +A N +G E+ V R+ E L + + L + Q S+ A+LI
Sbjct: 135 MEESKHYVAQANSSLDVEGRFTEEFVVCRHAGEVLMAPRDHIDLMDVSPKQLVSVAAALI 194
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKD 591
PF+E++DANRALM SNMQRQAVPL ++E +VGTG+E VA DSG A+ G + D
Sbjct: 195 PFLENDDANRALMGSNMQRQAVPLLRAEAPLVGTGMEAIVACDSGAAIGAKRGGIVDQVD 254
Query: 592 TNKIVL 597
+IV+
Sbjct: 255 AMRIVI 260
>gb|AAF08840.1| (AF194518) RNA polymerase beta subunit [Streptococcus mitis]
Length = 290
Score = 213 bits (536), Expect = 1e-53
Identities = 107/291 (36%), Positives = 180/291 (61%), Gaps = 5/291 (1%)
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+++ H R+LS LGPGGLT A + +RD+H +HYGR+CPI+T EG N+GLI +L+ + +
Sbjct: 1 SELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHL 60
Query: 445 GRWGSIESPFFEISERSKRI---HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARY 501
++G +++P+ ++ +R K + +++L+ ++ + +A + E++V R+
Sbjct: 61 NKYGFVQTPYRKV-DREKGVVTNEIVWLTADEEDEFTVAQAYSCLNEEWTFAEKVVMGRH 119
Query: 502 RQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKC 561
+ V + Q ++ + IPF+E++D+ RALM +NMQRQAVPL +
Sbjct: 120 QGVNQEYPANVVDYMDVSPKQVVAVATACIPFLENDDSTRALMGANMQRQAVPLINPKAP 179
Query: 562 IVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIVLFGSGETLSV-PLVIYRRSNKNTCM 620
VGTG+E Q A DSG I++++GK+ Y D +K+ + +L V + +RRSN T
Sbjct: 180 YVGTGMEYQAAHDSGAAVISQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAY 239
Query: 621 HQKSQVQRGKCIKRGQILADGAATVGGELSLGKNVLVAYMPWEGYNSEDAV 671
+Q++ V+ G +++G +ADG + GE++LG+N +VAYM WEGYN EDAV
Sbjct: 240 NQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAV 290
>gi|11466500 RNA polymerase subunit beta [Reclinomonas americana]
pir||S78131 DNA-directed RNA polymerase (EC 2.7.7.6) chain beta - Reclinomonas
americana (ATCC 50394) mitochondrion
gb|AAD11864.1| (AF007261) RNA polymerase subunit beta [Reclinomonas americana]
Length = 1478
Score = 211 bits (532), Expect = 3e-53
Identities = 122/305 (40%), Positives = 171/305 (56%), Gaps = 45/305 (14%)
Query: 797 SGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLG 856
+ Y+ + + + K I+VGDK+ GR+GNKG++S+IL+ +DMPYL+DG P+D+V +PLG
Sbjct: 1179 NNYSLRMVKVVVACKHNIQVGDKLTGRYGNKGVISRILSLEDMPYLRDGTPLDIVLSPLG 1238
Query: 857 VPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQT----- 911
V SRMN+GQ+ EC LGLAG L + ++ + Y+ + S LY+ K+
Sbjct: 1239 VSSRMNIGQLLECHLGLAGVELSK--KLQQIIQTYDIVGKSRKYLSMLYRNKKELLLLNS 1296
Query: 912 -------------------SNPWIFEP---------------EYPGKSRIFDGRTGTPFE 937
S P IF K I DG TG +
Sbjct: 1297 LNDSQIICLFKNISHGIPISTP-IFNSANNFDIDNLLRISGLNIQSKVTIIDGITGVVLD 1355
Query: 938 QPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFG 997
V +G Y++KL H +D KIHGRS+G Y ++TQQ KG+++ GGQR+GEMEVWAL+ +G
Sbjct: 1356 NKVTVGYMYMMKLNHLIDHKIHGRSTGPYNIITQQASKGKSRNGGQRLGEMEVWALQAYG 1415
Query: 998 VAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALELNHFL 1057
A+ LQEMLT+KSD +R L I G T +D P +F+LL ELR L +ELN F+
Sbjct: 1416 AAYTLQEMLTFKSDSTISRSSFLQNFIRGKT--SRIDIPRTFKLLRDELRVLGMELN-FI 1472
Query: 1058 VSEKN 1062
V N
Sbjct: 1473 VKRSN 1477
Score = 205 bits (517), Expect = 2e-51
Identities = 198/762 (25%), Positives = 332/762 (42%), Gaps = 103/762 (13%)
Query: 42 EDTDQEIEFQLFVETYQLVEPSIKEKDAVYESLTYSSELYVSAGLIW------------- 88
++ +Q I Q + + S KE + E+ TYS Y + W
Sbjct: 194 KNLNQNITHQEIDKLLDSFKISFKE---IGETFTYSITEYKYCNMGWFIDFNWKEISKYR 250
Query: 89 --KNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQSPGIYYQSEL-------D 139
K +KNI ++ N L N+ SI+N V+N S + +L D
Sbjct: 251 FIKKNKNIISTSLSFDNNLLANNDYISILN----TVVNNKFISNDKFLNHDLFLLDIYKD 306
Query: 140 HKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLNEILENVC 199
+K I + T D+ LEL ++ + +S + L L +N+
Sbjct: 307 NKSIFIIENTN-DDFSYPLEL----LNKVGSHLSSFKNSDFLFLIEN---------KNIN 352
Query: 200 YPEIFLSFLNDKEEKK------IGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQ 253
Y IF++ + + I SK+ +L F+ + D L+K
Sbjct: 353 YQYIFINLKEQPDSIRNSLQVVIESKKKKLLMFFNSKHVLKNDFF--------LEKDVLF 404
Query: 254 QRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMK--FRMGTLDDMNHLKN 311
+LG IGR +N + L+ + L D +LI + F + + L N
Sbjct: 405 HNFKLGPIGRLKINLKFGLN--EKKEELTSIDFTRILRYLIQIDKGFIENDIYEEQSLLN 462
Query: 312 KRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTP--QNLVTSTPLTTTYESFF 369
+R ++ + L L+ E+ +Y + +N + + +F+
Sbjct: 463 RRFNNIGEHLYSCLSDYLISKEDS---------KYSVSKEDYIKNQMLFKKINNCRNAFY 513
Query: 370 GL------HPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICP 423
L L Q ++ N L+ + H RK+S +GPGGL S +RD+H S YG+ICP
Sbjct: 514 FLIRYLNKSSLCQYTEQANALSYLGHTRKVSIMGPGGLKNDNISLEMRDVHISTYGKICP 573
Query: 424 IDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGN 483
I+T EG +VG++ +L+++ R +E+P+ + E + YL+P ++YY IA
Sbjct: 574 IETPEGKSVGVVNNLSLYTRTNTLFQLETPYIFVKENFVTNIIHYLTPQEEKYYKIAHAT 633
Query: 484 YLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRA 542
+ G+ + + RY +T+ + V + S Q S+ AS+IPF+EHND NRA
Sbjct: 634 EVLKKDGSFLNTKEIYCRYLHSLITVDSKNVDYIEMSSGQITSLSASMIPFLEHNDGNRA 693
Query: 543 LMSSNMQRQAVPLSQSEKCIVGTGLERQVALD----SGTLAIAEHEGKIIY--------K 590
LM SNMQ+QAVPL EK ++GTG+E + D S L + + + ++ K
Sbjct: 694 LMGSNMQKQAVPLLNLEKSLIGTGIEGIIGRDFFNISKNLLLEKMTNENVFGISILKILK 753
Query: 591 DTNKIVLFGSGETLSV------PLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAAT 644
NK ++F L + + ++ SN+ T + K ++ I I G +
Sbjct: 754 KENKNIIFSQFVDLFIKNHFLYSTIKHKNSNQKTDIDFKYVNKKNINIFENNIDNIGYSI 813
Query: 645 VGGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPER 704
ELSLG NVLV + G+ ED+++IS+R+V ++ + S H+ Y+ + E
Sbjct: 814 KNNELSLGNNVLVGFTSMNGHTFEDSIVISERIVRDNYFQSIHLEVYKTMEMYEKDSQEI 873
Query: 705 ITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQM 746
I N + LD +G++ LG+ V DIL+GK Q+
Sbjct: 874 IRNFLS------TDFLDVDGVIHLGTNVCTNDILIGKEKRQL 909
Score = 50.8 bits (119), Expect = 9e-05
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 16/143 (11%)
Query: 63 SIKEKDAVYES-LTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRI 121
S K D E+ LTYS LYV + K++ + +IG IPL+ G+ I+NG+
Sbjct: 77 SEKNPDECLENGLTYSIPLYVFLKVNMKDNVKDTIKKYYIGEIPLLTDSGSFIINGVENT 136
Query: 122 VINQILQSPGIYYQSELDHKGISVYTGTIISDWGGR-LELEIDRKARIWARVSRKQKISI 180
VINQ+++ G+Y K + T I GR ++L+ I ++ K IS
Sbjct: 137 VINQLVRDSGVYINKS---KSPFIKTSLKIRGLKGRSIQLDYFYDNFIGQKIDTKTLIS- 192
Query: 181 LVLSSAMGSNLNEILENVCYPEI 203
G NLN +N+ + EI
Sbjct: 193 -------GKNLN---QNITHQEI 205
>pir||JN0419 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Pseudomonas
putida (fragment)
gb|AAA25986.1| (M38319) RNA polymerase (rpoB) (EC 2.7.7.6) [Pseudomonas putida]
Length = 322
Score = 209 bits (527), Expect = 1e-52
Identities = 128/319 (40%), Positives = 180/319 (56%), Gaps = 49/319 (15%)
Query: 782 RGRVIDVRWLHKKG----GSGYNP---ETIHIYILQKREIKVGDKVAGRHGNKGIVSKIL 834
R R++D ++ KK G P + + +Y+ +R I+ GDK+AGRHGNKG+VS I+
Sbjct: 3 RRRLLDDKFEDKKRNVQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIM 62
Query: 835 ARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQE 894
+DMP+ +G PVD+V NPLGVPSRMNVGQI E LGLA L +I E +
Sbjct: 63 PVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKGLGE--KIDRMLEEQRKA 120
Query: 895 ASRKLVFSELYQ-------------------------------------ASKQTSNPWIF 917
A ++ +E+Y A ++ +
Sbjct: 121 AELRVFLTEVYNEIGGRQENLDEFNDEEVLALANNLKKGVPMATPVFDGAKEREIKAMLK 180
Query: 918 EPEYP--GKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLK 975
+ P G+ +FDGRT E+PV +G Y+LKL H VDDK+H RS+G Y+LVTQQPL
Sbjct: 181 LADLPESGQMVLFDGRTRNKSERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 240
Query: 976 GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDA 1035
G+A+ GGQR GEMEVWALE +G A+ LQEMLT KSD + R ++ + G +P A
Sbjct: 241 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMA 300
Query: 1036 PESFRLLVRELRSLALELN 1054
ESF +L++E+RSL ++++
Sbjct: 301 -ESFNVLIKEIRSLGIDID 318
>gb|AAB88812.1| (AF035660) DNA-dependent RNA polymerase beta subunit [Rickettsia
typhi]
Length = 335
Score = 201 bits (505), Expect = 5e-50
Identities = 116/290 (40%), Positives = 168/290 (57%), Gaps = 39/290 (13%)
Query: 802 ETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRM 861
+ + ++I K +++ GDK+AGRHGNKG++S+I+ +DMP+L+DG VD+V NPLG+PSRM
Sbjct: 45 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 104
Query: 862 NVGQIFECSLGLAG-------DVLDRHYR--------IAPF-------DERYEQEASRKL 899
N+GQI E LG A L + Y+ I F D Y E S +
Sbjct: 105 NIGQILETHLGWASINLAKKISTLVKEYKDNNIDIEQIKKFLLELYGKDINYILEGSEEG 164
Query: 900 VFSELYQASKQT--SNPW--------------IFEPEYPGKSRIFDGRTGTPFEQPVIIG 943
+ S + SK + P + + + G+ ++ DGRTG F++ V +G
Sbjct: 165 IISFCNKVSKGVYFATPVFDGAKVQDVKDMLKLADQDLSGQVKLIDGRTGEYFDRLVTVG 224
Query: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQ 1003
+ Y+LKL H VD+KIH RS G Y+LVTQQPL ++ GGQR GEME WAL+ +G A+ LQ
Sbjct: 225 HKYLLKLPHLVDNKIHSRSIGPYSLVTQQPLGSKSHFGGQRFGEMECWALQAYGAAYTLQ 284
Query: 1004 EMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
EMLT KSD + R + +I+ G + PESF ++++E RSL L +
Sbjct: 285 EMLTVKSDDVNGRIKTY-DSIVRGENNFESGIPESFNVMIKEFRSLCLNV 333
>gb|AAC38472.1| (AF060292) RNA polymerase beta-subunit [Mycobacterium fortuitum]
Length = 234
Score = 197 bits (495), Expect = 7e-49
Identities = 97/228 (42%), Positives = 146/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+HSSHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E++++ R E +A V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38487.1| (AF060307) RNA polymerase beta-subunit [Mycobacterium fortuitum]
Length = 234
Score = 196 bits (494), Expect = 9e-49
Identities = 97/228 (42%), Positives = 147/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+HSSHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G+ E++++ R E +A V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDADGSFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38461.1| (AF060281) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38476.1| (AF060296) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38492.1| (AF060312) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38493.1| (AF060313) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38494.1| (AF060314) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38495.1| (AF060315) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38496.1| (AF060316) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38497.1| (AF060317) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38498.1| (AF060318) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38499.1| (AF060319) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38502.1| (AF060322) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38545.1| (AF060365) RNA polymerase beta-subunit [Mycobacterium xenopi]
Length = 234
Score = 196 bits (494), Expect = 9e-49
Identities = 96/228 (42%), Positives = 146/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+HSSHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ ++YL+
Sbjct: 67 RDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPYGFIETPYRKVVNGVVTDEIVYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E ++ +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDEDGRFTEPRVLVRRKGGEVEYVSSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38525.1| (AF060345) RNA polymerase beta-subunit [Mycobacterium chelonae]
Length = 234
Score = 196 bits (493), Expect = 1e-48
Identities = 98/228 (42%), Positives = 145/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGLT A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ E + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDEIRYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N +G EE+++ R E + V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPTDEKGRFTEERVLVRRKGGEVEFVPSTGVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38488.1| (AF060308) RNA polymerase beta-subunit [Mycobacterium fortuitum]
gb|AAC38543.1| (AF060363) RNA polymerase beta-subunit [Mycobacterium fortuitum]
Length = 234
Score = 196 bits (493), Expect = 1e-48
Identities = 97/228 (42%), Positives = 146/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+HSSHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E++++ R E +A V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDPDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38504.1| (AF060324) RNA polymerase beta-subunit [Mycobacterium fortuitum]
Length = 234
Score = 196 bits (492), Expect = 2e-48
Identities = 96/228 (42%), Positives = 148/228 (64%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+HSSHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVITDQIDYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N + G E++++ R E ++ +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDDNGRFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38503.1| (AF060323) RNA polymerase beta-subunit [Mycobacterium xenopi]
gb|AAC38534.1| (AF060354) RNA polymerase beta-subunit [Mycobacterium smegmatis]
Length = 234
Score = 195 bits (491), Expect = 2e-48
Identities = 95/228 (41%), Positives = 146/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E++++ + E ++ +QV + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38491.1| (AF060311) RNA polymerase beta-subunit [Mycobacterium avium]
Length = 234
Score = 195 bits (491), Expect = 2e-48
Identities = 96/228 (42%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGNQEE-QIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N ++G EE +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDDKGRFEEXRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38489.1| (AF060309) RNA polymerase beta-subunit [Mycobacterium fortuitum]
Length = 234
Score = 195 bits (491), Expect = 2e-48
Identities = 96/228 (42%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+HSSHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLT 126
Query: 471 PSRDEYYMIATGNY-LALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N + + E++++ R E +A V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIGADGSFTEDRVMVRRKGGEVENVAPIDVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38501.1| (AF060321) RNA polymerase beta-subunit [Mycobacterium xenopi]
Length = 234
Score = 195 bits (490), Expect = 3e-48
Identities = 95/228 (41%), Positives = 145/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+HSSHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ ++YL+
Sbjct: 67 RDVHSSHYGRMCPIETPEGPNIGLIGSLSVYARVNPYGFIETPYRKVVNGVVTDEIVYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E ++ +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDEDGRFTEPRVLVRRKGGEVEYVSSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL + E +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRXEAPLVGTGMELRAAIDAAT 234
>gb|AAC38474.1| (AF060294) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38481.1| (AF060301) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38482.1| (AF060302) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38484.1| (AF060304) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38485.1| (AF060305) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38486.1| (AF060306) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38510.1| (AF060330) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38521.1| (AF060341) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38532.1| (AF060352) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38537.1| (AF060357) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38538.1| (AF060358) RNA polymerase beta-subunit [Mycobacterium kansasii]
gb|AAC38547.1| (AF060367) RNA polymerase beta-subunit [Mycobacterium kansasii]
Length = 234
Score = 194 bits (489), Expect = 4e-48
Identities = 96/228 (42%), Positives = 146/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVIDGLVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N +G E +++ R E +A +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDAEGRFVEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38536.1| (AF060356) RNA polymerase beta-subunit [Mycobacterium scrofulaceum]
Length = 234
Score = 194 bits (488), Expect = 5e-48
Identities = 95/228 (41%), Positives = 145/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNTFGFIETPYRKVVDGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G +E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDASGRFEESRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38512.1| (AF060332) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38513.1| (AF060333) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38514.1| (AF060334) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38515.1| (AF060335) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38516.1| (AF060336) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38517.1| (AF060337) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38518.1| (AF060338) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38519.1| (AF060339) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38520.1| (AF060340) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38522.1| (AF060342) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38523.1| (AF060343) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38539.1| (AF060359) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
gb|AAC38540.1| (AF060360) RNA polymerase beta-subunit [Mycobacterium
intracellulare]
Length = 234
Score = 194 bits (488), Expect = 5e-48
Identities = 95/228 (41%), Positives = 146/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N +G +E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDAKGRFEESRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38463.1| (AF060283) RNA polymerase beta-subunit [Mycobacterium gordonae]
gb|AAC38468.1| (AF060288) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 194 bits (488), Expect = 5e-48
Identities = 96/228 (42%), Positives = 144/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ E+ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYREVVDGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDENGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38535.1| (AF060355) RNA polymerase beta-subunit [Mycobacterium scrofulaceum]
Length = 234
Score = 194 bits (487), Expect = 6e-48
Identities = 95/228 (41%), Positives = 145/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G +E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDASGRFEESRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38500.1| (AF060320) RNA polymerase beta-subunit [Mycobacterium kansasii]
Length = 234
Score = 194 bits (487), Expect = 6e-48
Identities = 96/228 (42%), Positives = 145/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVIDGLVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E +A +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38470.1| (AF060290) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 194 bits (487), Expect = 6e-48
Identities = 96/228 (42%), Positives = 144/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ E + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVSDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDESGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38459.1| (AF060279) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38473.1| (AF060293) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38477.1| (AF060297) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38479.1| (AF060299) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38480.1| (AF060300) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38505.1| (AF060325) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38506.1| (AF060326) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38507.1| (AF060327) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38508.1| (AF060328) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38509.1| (AF060329) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38511.1| (AF060331) RNA polymerase beta-subunit [Mycobacterium avium]
gb|AAC38531.1| (AF060351) RNA polymerase beta-subunit [Mycobacterium avium]
Length = 234
Score = 194 bits (487), Expect = 6e-48
Identities = 95/228 (41%), Positives = 146/228 (63%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N ++G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38533.1| (AF060353) RNA polymerase beta-subunit [Mycobacterium tuberculosis]
Length = 234
Score = 193 bits (486), Expect = 8e-48
Identities = 95/228 (41%), Positives = 145/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + ++YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38490.1| (AF060310) RNA polymerase beta-subunit [Mycobacterium avium]
Length = 234
Score = 193 bits (486), Expect = 8e-48
Identities = 95/228 (41%), Positives = 145/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINXRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N ++G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAXDAAT 234
>gb|AAC38478.1| (AF060298) RNA polymerase beta-subunit [Mycobacterium scrofulaceum]
Length = 234
Score = 193 bits (485), Expect = 1e-47
Identities = 95/228 (41%), Positives = 145/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + ++YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDADGRFVEGRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38465.1| (AF060285) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 193 bits (485), Expect = 1e-47
Identities = 96/228 (42%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ E+ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYREVVDGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDENGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAXDAAT 234
>gb|AAC38462.1| (AF060282) RNA polymerase beta-subunit [Mycobacterium gordonae]
gb|AAC38464.1| (AF060284) RNA polymerase beta-subunit [Mycobacterium gordonae]
gb|AAC38466.1| (AF060286) RNA polymerase beta-subunit [Mycobacterium gordonae]
gb|AAC38467.1| (AF060287) RNA polymerase beta-subunit [Mycobacterium gordonae]
gb|AAC38541.1| (AF060361) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 193 bits (485), Expect = 1e-47
Identities = 95/228 (41%), Positives = 144/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDESGRFAEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38483.1| (AF060303) RNA polymerase beta-subunit [Mycobacterium kansasii]
Length = 234
Score = 192 bits (482), Expect = 2e-47
Identities = 95/228 (41%), Positives = 145/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS GPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSAPGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVIDGLVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N +G E +++ R E +A +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDAEGRFVEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38528.1| (AF060348) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 191 bits (481), Expect = 3e-47
Identities = 94/228 (41%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDESGRFAEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + +D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAXIDAAT 234
>gb|AAC38527.1| (AF060347) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 191 bits (481), Expect = 3e-47
Identities = 96/228 (42%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRRVVSGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNY-LALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N LA E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPLAGASHFAEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38469.1| (AF060289) RNA polymerase beta-subunit [Mycobacterium gordonae]
gb|AAC38471.1| (AF060291) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 191 bits (481), Expect = 3e-47
Identities = 95/228 (41%), Positives = 142/228 (61%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRRVVSGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDENGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38460.1| (AF060280) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 191 bits (481), Expect = 3e-47
Identities = 95/228 (41%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
+ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEGDPHVVAQANSPIDESGRFAEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38542.1| (AF060362) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 190 bits (478), Expect = 7e-47
Identities = 94/228 (41%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG SQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQXSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAVLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDESGRFAEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAAT 234
>gb|AAC38529.1| (AF060349) RNA polymerase beta-subunit [Mycobacterium gordonae]
Length = 234
Score = 188 bits (473), Expect = 3e-46
Identities = 94/228 (41%), Positives = 141/228 (61%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRRVVSGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N G E +++ R E + +V + Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDADGRFVEGRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E + +D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAXIDAXT 234
>gb|AAC38546.1| (AF060366) RNA polymerase beta-subunit [Mycobacterium avium]
Length = 234
Score = 187 bits (470), Expect = 6e-46
Identities = 93/228 (40%), Positives = 142/228 (61%), Gaps = 1/228 (0%)
Query: 351 TPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TPQ L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +
Sbjct: 7 TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV 66
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
RD+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+
Sbjct: 67 RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLT 126
Query: 471 PSRDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGAS 529
++ +++A N +G E +++ R E + +V Q S+ +
Sbjct: 127 ADEEDRHVVAQANSPIDGKGRFAEARVLVRRKAGEVEYVPSSEVDYMDXSPRQMVSVATA 186
Query: 530 LIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGT 577
+IPF+EH+DANRALM +NM RQAVPL +S +VGTG+E + A+D+ T
Sbjct: 187 MIPFLEHDDANRALMGANMXRQAVPLVRSXAPLVGTGMELRAAIDAAT 234
>gb|AAC38524.1| (AF060344) RNA polymerase beta-subunit [Mycobacterium chelonae]
Length = 217
Score = 187 bits (470), Expect = 6e-46
Identities = 94/217 (43%), Positives = 139/217 (63%), Gaps = 1/217 (0%)
Query: 353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRD 412
Q L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGLT A +RD
Sbjct: 1 QTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRD 60
Query: 413 IHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPS 472
+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++SE + YL+
Sbjct: 61 VHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSEGVVTDEIHYLTAD 120
Query: 473 RDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
++ +++A N G E++I+ R E ++ +V + Q S+ ++I
Sbjct: 121 EEDRHVVAQANSPVDADGRFTEDKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMI 180
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLE 568
PF+EH+DANRALM +NMQRQAVPL +SE +VGTG+E
Sbjct: 181 PFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGME 217
>gb|AAC38544.1| (AF060364) RNA polymerase beta-subunit [Mycobacterium chelonae]
Length = 216
Score = 185 bits (465), Expect = 2e-45
Identities = 93/216 (43%), Positives = 138/216 (63%), Gaps = 1/216 (0%)
Query: 353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRD 412
Q L+ P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGLT A +RD
Sbjct: 1 QTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRD 60
Query: 413 IHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPS 472
+H SHYGR+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++SE + YL+
Sbjct: 61 VHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSEGVVTDEIHYLTAD 120
Query: 473 RDEYYMIATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLI 531
++ +++A N G E++I+ R E ++ +V + Q S+ ++I
Sbjct: 121 EEDRHVVAQANSPVDADGRFTEDKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMI 180
Query: 532 PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGL 567
PF+EH+DANRALM +NMQRQAVPL +SE +VGTG+
Sbjct: 181 PFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGM 216
>gb|AAC38530.1| (AF060350) RNA polymerase beta-subunit [Mycobacterium chelonae]
Length = 215
Score = 183 bits (461), Expect = 7e-45
Identities = 92/210 (43%), Positives = 136/210 (63%), Gaps = 1/210 (0%)
Query: 360 PLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYG 419
P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGLT A +RD+H SHYG
Sbjct: 5 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYG 64
Query: 420 RICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMI 479
R+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++SE + YL+ ++ +++
Sbjct: 65 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSEGVVTDEIHYLTADEEDRHVV 124
Query: 480 ATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
A N G E++I+ R E ++ +V + Q S+ ++IPF+EH+D
Sbjct: 125 AQANSPVDADGRFTEDKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDD 184
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGTGLE 568
ANRALM +NMQRQAVPL +SE +VGTG+E
Sbjct: 185 ANRALMGANMQRQAVPLVRSEAPLVGTGME 214
>sp|P27059|RPOB_ASTLO DNA-DIRECTED RNA POLYMERASE BETA CHAIN
pir||S23207 DNA-directed RNA polymerase (EC 2.7.7.6) chain a - euglenid
(Astasia longa) plastid (fragment)
Length = 528
Score = 183 bits (459), Expect = 1e-44
Identities = 147/547 (26%), Positives = 264/547 (47%), Gaps = 52/547 (9%)
Query: 9 MSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKD 68
+ T L IQ + F F+ G+ EL K KI ++ EI F + Y+ +P + +
Sbjct: 5 LKTYSNLLNIQSKSFKNFLKIGIINELKKIQKIIHSNFEINFHINALKYK--KPKLSSES 62
Query: 69 AVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQ 128
+ ++ TY+ ++ + + ++ +++ I IP M GT I NG RI+INQ+++
Sbjct: 63 CLIKNETYNIDIKIPMEIKYEGKIIFKKKYISFCKIPFMTEKGTFICNGNTRIIINQLIR 122
Query: 129 SPGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSR-KQKISILVLSSAM 187
SPGIY + K + T+I G + ++ ++K + ++ + I + + +
Sbjct: 123 SPGIYIK-----KKKNCLLATLIPKTGSWITIKRNKKKENFIKIDKINNSIPLFTFLNIL 177
Query: 188 GSNLNEILENVCYPEIFLSFLNDKEEKKIG---------SKESAILEFYRQFACVGGDPV 238
G + +I ++ +F K+ KKI SKE+ I+ +
Sbjct: 178 GLSKKKITLSLNKNNYSKNFKISKK-KKIEIPTINLTQLSKENNIMRLLK---------- 226
Query: 239 FPESLCRELQKKFFQQ-RCELGEIGRRNMNRRL-NLDIPQNNTFLLPRDILTAADHLIGM 296
++ L +F LG+ GR +N+++ + N L+P D L +++I +
Sbjct: 227 ---TIRNNLYNRFLNSDNYNLGDTGRFKINKKIYKTEFFTNKKILMPEDFLGIFNYMIKI 283
Query: 297 KFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQN-- 354
K + ++ LKNK + SV +L+Q++F + + + I + K N
Sbjct: 284 KNINIKSNKIDDLKNKIVLSVGELMQNKFNNIIKDIYTKIIEKINKFEQKKKQEEKYNKE 343
Query: 355 ------------LVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLT 402
+ S LT + F +PLSQ+L+ NPL+++ H RK+S LG GG+
Sbjct: 344 KKEEKIKINKTYFINSKNLTDNIKKFITTNPLSQLLNDLNPLSELTHKRKISTLGIGGIE 403
Query: 403 GRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERS- 461
AS +IR+IH+SHYGRICPI+TSEG N GL+ SLA RI + G IESPF+++ + +
Sbjct: 404 KNKASTKIREIHNSHYGRICPIETSEGKNAGLVLSLAKDIRINKHGFIESPFYKVIKGNI 463
Query: 462 -KRIHMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFS 520
K + ++S ++ IA + L + N+ + + + EF +++ ++ S +
Sbjct: 464 KKNKGIFFISSENEKNIKIAPCDILKNFKLNKNYGV---KNKNEFYYDSYKSINFISTST 520
Query: 521 FQYFSIG 527
Q+ SIG
Sbjct: 521 DQFNSIG 527
>gb|AAC38526.1| (AF060346) RNA polymerase beta-subunit [Mycobacterium chelonae]
Length = 213
Score = 182 bits (456), Expect = 3e-44
Identities = 91/209 (43%), Positives = 135/209 (64%), Gaps = 1/209 (0%)
Query: 360 PLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYG 419
P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGLT A +RD+H SHYG
Sbjct: 5 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYG 64
Query: 420 RICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMI 479
R+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++SE + YL+ ++ +++
Sbjct: 65 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSEGVVTDEIHYLTADEEDRHVV 124
Query: 480 ATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
A N G E++I+ R E ++ +V + Q S+ ++IPF+EH+D
Sbjct: 125 AQANSPVDADGRFTEDKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDD 184
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGTGL 567
ANRALM +NMQRQAVPL +SE +VGTG+
Sbjct: 185 ANRALMGANMQRQAVPLVRSEAPLVGTGM 213
>pir||G72571 probable DNA-directed RNA polymerase subunit B APE1856 - Aeropyrum
pernix (strain K1)
dbj|BAA80860.1| (AP000062) 1169aa long hypothetical DNA-directed RNA polymerase
subunit B [Aeropyrum pernix]
Length = 1169
Score = 177 bits (445), Expect = 5e-43
Identities = 129/428 (30%), Positives = 214/428 (49%), Gaps = 53/428 (12%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYE-IQTHVTSNGPERIT 706
E G+N++VA M + GYN EDA++ + + + ++ R Y I+ +RIT
Sbjct: 752 ERPAGQNMVVAIMSYTGYNIEDALIFNKGSIDMGLARAYFFRVYTGIENEYPGGERDRIT 811
Query: 707 NKIPHLEVHLLRN------LDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLR 760
P EV+ R L+ +G+V + VE G+IL+G+++P + E R
Sbjct: 812 LPKPD-EVYDYRGAAAYAKLEADGIVAPETEVEGGEILIGRVSPPR-----FLGEGR--- 862
Query: 761 AILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKV 820
++ + ++T + + +G +G V+D+ + + + + + + R ++GDK
Sbjct: 863 -VISMATVRRRDTSIPMRLGEKG-VVDMVVIST---TVERNKLVKVRVRNLRIPEIGDKF 917
Query: 821 AGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDR 880
A RHG KG++ I R DMPY ++G D++ NP +PSRM VGQ+ E G G + R
Sbjct: 918 ASRHGQKGVIGMIFPRYDMPYTEEGIEPDVILNPHAIPSRMTVGQLLEEIAGKLGAIKGR 977
Query: 881 HYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPV 940
PF + + + R + E Y + + ++DGRTG E P+
Sbjct: 978 FVDATPFFKE-DIDGLRIELLKEGYDPN--------------AREVMYDGRTGQIIEAPI 1022
Query: 941 IIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAH 1000
IG Y +L H V DKIH R++G L+T+QP +G+A+QGG R GEME L G G +
Sbjct: 1023 TIGVAYYQRLYHMVADKIHARATGRVHLLTRQPTEGKARQGGLRFGEMERDCLVGHGASM 1082
Query: 1001 ILQEMLTYKSD--------------HIKARQEVLGTTIIG--GTISKPVDAPESFRLLVR 1044
+L++ + SD R++VL I G G I +PV P +F+LL++
Sbjct: 1083 LLRDRMLDNSDAYVMYVCNTCGNIAWFNRRKKVLECPIHGEEGDI-RPVKVPYAFKLLLQ 1141
Query: 1045 ELRSLALE 1052
E+ S+ ++
Sbjct: 1142 EITSMMIK 1149
Score = 69.5 bits (167), Expect = 2e-10
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 304 DDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTT 363
DD + L NKR+R DL+ + F +L L N + + + + LV T ++
Sbjct: 365 DDKDFLGNKRLRLAGDLIAELFRESLEALANTMAQKLEEQLAERRQIRLDFLVRPTIISD 424
Query: 364 TYESFFGL-------HPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSS 416
+ +SQ LDRTN ++ + H R++ + P L+ A F RD+H S
Sbjct: 425 RLKGAIATGNWGQDRTGISQQLDRTNWISLLSHLRRV--ISP--LSRGQAHFEARDLHGS 480
Query: 417 HYGRICPIDTSEGINVGLIGSLAIHARI 444
H+GR CP +T EGIN GL+ +LA+ A I
Sbjct: 481 HWGRYCPFETPEGINCGLVKNLALSAYI 508
>gb|AAC38475.1| (AF060295) RNA polymerase beta-subunit [Mycobacterium avium]
Length = 208
Score = 174 bits (436), Expect = 6e-42
Identities = 86/207 (41%), Positives = 132/207 (63%), Gaps = 1/207 (0%)
Query: 360 PLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYG 419
P+ + FFG LSQ +D+ NPL+ + H R+LS LGPGGL+ A +RD+H SHYG
Sbjct: 2 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYG 61
Query: 420 RICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMI 479
R+CPI+T EG N+GLIGSL+++AR+ +G IE+P+ ++ + + YL+ ++ +++
Sbjct: 62 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHVV 121
Query: 480 ATGNYLALNQGN-QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHND 538
A N ++G E +++ R E + +V + Q S+ ++IPF+EH+D
Sbjct: 122 AQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDD 181
Query: 539 ANRALMSSNMQRQAVPLSQSEKCIVGT 565
ANRALM +NMQRQAVPL +SE +VGT
Sbjct: 182 ANRALMGANMQRQAVPLVRSEAPLVGT 208
>sp|O27124|RPB1_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT B'
pir||F69006 DNA-directed RNA polymerase (EC 2.7.7.6) chain B' - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85541.1| (AE000876) DNA-dependent RNA polymerase, subunit B'
[Methanothermobacter thermautotrophicus]
Length = 603
Score = 173 bits (434), Expect = 1e-41
Identities = 134/425 (31%), Positives = 202/425 (47%), Gaps = 59/425 (13%)
Query: 652 GKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPH 711
G+N +VA M +EGYN EDA++++ + + S R YE G E +IP
Sbjct: 203 GQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEAAERRYPGGQED-RFEIPE 261
Query: 712 LEVHLLRN------LDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI--L 763
V R+ LD++G++ + V +GD+L+GK +P R L I
Sbjct: 262 KGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPP-----------RFLEEIDEF 310
Query: 764 GIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGR 823
G +ET + + G +G V V GS I + ++R+ ++GDK A R
Sbjct: 311 GTVAERRRETSVTVRHGEKGIVDAVLLTETVEGS----RLAKIRVREQRQPELGDKFASR 366
Query: 824 HGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYR 883
HG KG+V I++++DMP+ +DG D++ NP +PSRM+VGQ+ E G A + R
Sbjct: 367 HGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVD 426
Query: 884 IAPF---DERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPV 940
PF DE +EA R F E G +++G TG E +
Sbjct: 427 GTPFTGEDEDDIKEALRANGF------------------ETAGVESLYNGITGERIEAEI 468
Query: 941 IIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAH 1000
IG Y KL H DK++ RS G ++T+QP +GRA++GG R GEME L G A
Sbjct: 469 FIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAAL 528
Query: 1001 ILQEMLTYKSDHIKAR--------------QEVLGTTIIGGTISKPVDAPESFRLLVREL 1046
L+E L +SD +A ++ I + S PV+ +F+LL+ EL
Sbjct: 529 ALKERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICEDSESFPVEVSYAFKLLLDEL 588
Query: 1047 RSLAL 1051
+SL +
Sbjct: 589 KSLCI 593
>sp|Q10578|RPB2_CAEEL DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT (RNA POLYMERASE
I SUBUNIT 2)
gb|AAA21158.1| (U13875) highly similar to DNA-directed RNA polymerase II
[Caenorhabditis elegans]
Length = 1193
Score = 173 bits (434), Expect = 1e-41
Identities = 247/1122 (22%), Positives = 431/1122 (38%), Gaps = 172/1122 (15%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIE----------DTDQEIEFQLFVETYQLVEPS 63
GL + Q + F F+ + + P +E D + +F L L +P+
Sbjct: 45 GLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKPT 104
Query: 64 IKEKD----------AVYESLTYSSELYVSAGLIWKNSKNIQEQT---IFIGNIPLM--- 107
EKD A +LTY+S LYV + + E+ +F+G +P+M
Sbjct: 105 HWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRS 164
Query: 108 ---------------------NSLGTSIVNGIYRIVINQILQSPGIYY------------ 134
+ G ++NG +++I Q + Y
Sbjct: 165 SYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYAFK 224
Query: 135 ---QSELDHKG---ISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMG 188
+S L++ +++ + GG + + ++ I KQ+I I+++ A+G
Sbjct: 225 TECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRI-IGILPYIKQEIPIMIVFRALG 283
Query: 189 S-NLNEILENVCY----PEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPESL 243
+ +IL ++ Y PE+ +E + +++ L F +G P +
Sbjct: 284 FVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALNF------IGARGAKP-GV 336
Query: 244 CRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMGTL 303
RE + K+ ++ + + ++ +++ R +L A +G + L
Sbjct: 337 TREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAA----LGRR----EL 388
Query: 304 DDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTT 363
DD +H+ NKR+ LL F L +R T I V ++ +T
Sbjct: 389 DDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITR 448
Query: 364 --TYESFFG-------LHP----LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRI 410
TY G H +SQVL+R + H R+ + P G G+ A +
Sbjct: 449 GLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRAN--SPIGREGKLA--KP 504
Query: 411 RDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLS 470
R +H++ +G +CP +T EG VGL+ +LA+ A I GS+ P E E ++ +S
Sbjct: 505 RQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISV-GSLPEPILEFLEEWSMENLEEVS 563
Query: 471 PSR--DEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQ---YFS 525
PS D + G ++ +++ + + R++ I E +R I + Y
Sbjct: 564 PSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTD 623
Query: 526 IGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKC----IVGTGLERQV-ALDSGTLAI 580
G P + + AL ++ + ++ K +VG G+ + +++ T I
Sbjct: 624 AGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMI 683
Query: 581 AEHEGKII---YKDTNKIVLFGSGETLSV-----PLVIYRRSNKNTCMHQKSQVQRGKCI 632
A + Y DT+ L V P + +S +NT + G
Sbjct: 684 AMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYT 743
Query: 633 KRGQILADGAATV------------------GGELSLGKNVLVAYMPWEGYNSEDAVLIS 674
+ D A V EL G N +VA + + GYN ED+V+++
Sbjct: 744 TNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMN 803
Query: 675 DRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRN-----LDKNGLVILG 729
+ + ++ S R Y N E + K + +R+ LD++G++ G
Sbjct: 804 NSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPG 863
Query: 730 SWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVR 789
V D+++GK + + S ET G V V
Sbjct: 864 MRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSET---------GIVDQVM 914
Query: 790 WLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVD 849
G+ + + I + R ++GDK A RHG KG + + ++DMP+ +G D
Sbjct: 915 LSLNSDGNKF----VKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPD 970
Query: 850 MVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASK 909
++ NP VPSRM +G + EC G PF++ + L+ Y
Sbjct: 971 IIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLR- 1029
Query: 910 QTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALV 969
G +++G TG + G Y +L H VDDKIH R+ G ++
Sbjct: 1030 -------------GNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMM 1076
Query: 970 TQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSD 1011
+QP++GRA+ GG R GEME G L+E L SD
Sbjct: 1077 NRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSD 1118
>gi|4505941 polymerase (RNA) II (DNA directed) polypeptide B (140kD) [Homo
sapiens]
sp|P30876|RPB2_HUMAN DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2) (RPB2)
pir||S28976 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - human
emb|CAA45124.1| (X63563) RNA polymerase II 140 kDa subunit [Homo sapiens]
gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
largest subunit [human, HeLa cells, Peptide, 1174 aa]
Length = 1174
Score = 170 bits (426), Expect = 9e-41
Identities = 258/1128 (22%), Positives = 445/1128 (38%), Gaps = 183/1128 (16%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIE----------DTDQEIEFQLFVETYQLVEPS 63
GL + Q + F FI + + P I+ + ++ + L E L +P+
Sbjct: 38 GLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPT 97
Query: 64 IKEKD----------AVYESLTYSSELYV--SAGLIWKNSKNIQ--EQTIFIGNIPLM-- 107
E+D A +LTYS+ LYV + +I + + +Q Q FIG IP+M
Sbjct: 98 HWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLR 157
Query: 108 ------NSL----------------GTSIVNGIYRIVINQILQSPG-IYYQSELDHKGIS 144
N L G I+NG +++I Q + +Y ++ D K
Sbjct: 158 STYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSK--Y 215
Query: 145 VYTGTIISD-----------WGGRLEL--EIDRKARIWARVSR-----KQKISILVLSSA 186
YTG S W L + +K+ I R+ KQ++ I+++ A
Sbjct: 216 AYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRA 275
Query: 187 MGS-NLNEILENVCY----PEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGDPVFPE 241
+G + +ILE++ Y PE+ +E + +++ L F +G P
Sbjct: 276 LGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF------IGSRGAKP- 328
Query: 242 SLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMKFRMG 301
+ +E + K+ ++ + + ++ +++ R +L A +G +
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAA----LGRR---- 380
Query: 302 TLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVR------------GTICGAIRYKLI 349
LDD +H NKR+ LL F L VR + AI+ ++I
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 350 PTPQNLVTST----PLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRT 405
+T +++ G+ SQVL+R + + H R+L+ P G G+
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGV---SQVLNRLTFASTLSHLRRLN--SPIGRDGKL 495
Query: 406 ASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIH 465
A + R +H++ +G +CP +T EG VGL+ +LA+ A I GS SP E E +
Sbjct: 496 A--KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV-GSQPSPILEFLEEWSMEN 552
Query: 466 MLYLSPSR--DEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQ- 522
+ +SP+ D + G ++ +++ ++ + R++ I E +R I +
Sbjct: 553 LEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 612
Query: 523 --YFSIGASLIPFIEHNDANRALMSSNMQ--RQAVPLSQSEKCIVGTGLERQV-ALDSGT 577
Y G P + L ++ ++ + S + +V +G+ + L+ T
Sbjct: 613 RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 672
Query: 578 LAIAE-----HEGKIIYKDT------NKIVLFGSGETLSVPLVIYRRSNKNTCMHQKSQV 626
+ +A E ++ Y T + ++ G ++ +P + +S +NT +
Sbjct: 673 VMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASI-IPFPDHNQSPRNTYQSAMGKQ 731
Query: 627 QRGKCIKRGQILADGAATV------------------GGELSLGKNVLVAYMPWEGYNSE 668
G I + D A V EL G N +VA + GYN E
Sbjct: 732 AMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQE 791
Query: 669 DAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRN-----LDKN 723
D+V+++ V + S R Y+ Q E + K +R+ LD +
Sbjct: 792 DSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDD 851
Query: 724 GLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRG 783
GL+ G V D+++GK E +R T ++ L G
Sbjct: 852 GLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRY---------TKRDCSTFLRTSETG 902
Query: 784 RVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQ 843
V V + G + I + R ++GDK A RHG KG ++DMP+
Sbjct: 903 IVDQVMVTLNQEGYKF----CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC 958
Query: 844 DGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSE 903
+G D++ NP +PSRM +G + EC G PF++ + L+
Sbjct: 959 EGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDY 1018
Query: 904 LYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSS 963
Y G +++G TG + IG Y +L H VDDKIH R+
Sbjct: 1019 GYHLR--------------GNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRAR 1064
Query: 964 GHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSD 1011
G ++ +QP++GR++ GG R GEME G A L+E L SD
Sbjct: 1065 GPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASD 1112
>pir||A27826 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
fruit fly (Drosophila melanogaster)
Length = 1176
Score = 169 bits (424), Expect = 2e-40
Identities = 259/1131 (22%), Positives = 441/1131 (38%), Gaps = 188/1131 (16%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIE------DTDQEIE----FQLFVETYQLVEPS 63
GL + Q + F FI + + P IE T E+E F L E L +P+
Sbjct: 39 GLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAERQHTSGEVETPPRFSLKFEQIYLSKPT 98
Query: 64 IKEKD----------AVYESLTYSSELYVSAGLIWKNSKNI--------QEQTIFIGNIP 105
EKD A +LTYS+ LYV +KN+ Q Q FIG IP
Sbjct: 99 HWEKDGSPSPMMPNEARLRNLTYSAPLYVDI----TKTKNVEGLDPVETQHQKTFIGKIP 154
Query: 106 LM------------------------NSLGTSIVNGIYRIVINQILQSPGIYY------- 134
+M + G I+NG +++I Q + Y
Sbjct: 155 IMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDG 214
Query: 135 --------QSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSR-----KQKISIL 181
+S L+H S T T+ + R I +K+ I R+ KQ+I I+
Sbjct: 215 KYAFKTEIRSCLEHS--SRPTSTLWVNMMARGSQNI-KKSAIGQRIIAILPYIKQEIPIM 271
Query: 182 VLSSAMGSNLN-EILENVCY----PEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGD 236
++ A+G + +ILE++ Y PE+ +E + +++ L F +G
Sbjct: 272 IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF------IGAR 325
Query: 237 PVFPESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGM 296
P + ++ + K+ ++ + + ++ +++ R +L + +G
Sbjct: 326 GARP-GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS----LGR 380
Query: 297 KFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVR----GTICGAIRYKL-IPT 351
+ LDD +H NKR+ LL F L VR I + L +
Sbjct: 381 R----ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAI 436
Query: 352 PQNLVTSTPLTTTYESFFGLHP--------LSQVLDRTNPLTQIVHGRKLSYLGPGGLTG 403
N++T + +G +SQVL+R + + H R+++ P G G
Sbjct: 437 KTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVN--SPIGRDG 494
Query: 404 RTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKR 463
+ A + R +H++ +G +CP +T EG VGL+ +LA+ A I GS SP E E
Sbjct: 495 KLA--KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISV-GSQPSPILEFLEEWSM 551
Query: 464 IHMLYLSPSR--DEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSF 521
++ ++PS D + G ++ +++ ++ + R++ I E +R I
Sbjct: 552 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611
Query: 522 Q---YFSIGASLIPFIEHNDANRALMSSNMQ--RQAVPLSQSEKCIVGTGL-ERQVALDS 575
+ Y G P + + + L ++++ ++ + S + +V +G+ E L+
Sbjct: 612 EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYMYTLEE 671
Query: 576 GTLAIA------EHEGKIIYKDT------NKIVLFGSGETLSVPLVIYRRSNKNTCMHQK 623
T+ IA + + Y T + ++ G ++ +P + +S +NT
Sbjct: 672 ETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASI-IPFPDHNQSPRNTYQSAM 730
Query: 624 SQVQRGKCIKRGQILADGAATV------------------GGELSLGKNVLVAYMPWEGY 665
+ G I + D A V EL G N +VA + + GY
Sbjct: 731 GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGY 790
Query: 666 NSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRN-----L 720
N ED+V+++ V + S R Y+ + E K +RN L
Sbjct: 791 NQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKL 850
Query: 721 DKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG 780
D +G++ G V D+++GK + + SK
Sbjct: 851 DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRF----------SKRDASTFLRN 900
Query: 781 GRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMP 840
++D L GY + I + R ++GDK A RHG KG ++DM
Sbjct: 901 SETGIVDQVML-TLNSEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMA 957
Query: 841 YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLV 900
+ +G D++ NP +PSRM +G + EC G G PF++ + +
Sbjct: 958 FTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFL 1017
Query: 901 FSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHG 960
Y G +++G TG V +G Y +L H VDDKIH
Sbjct: 1018 QEYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063
Query: 961 RSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSD 1011
R+ G ++ +QP++GRA+ GG R GEME G A L+E L SD
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 1114
>sp|P09845|RPB1_METTW DNA-DIRECTED RNA POLYMERASE SUBUNIT B'
pir||S02195 DNA-directed RNA polymerase (EC 2.7.7.6) chain B' - Methanobacterium
thermoautotrophicum (strain Winter)
emb|CAA30837.1| (X08038) RNA polymerase subunit B' (AA 1-604) [Methanobacterium
thermoautotrophicum]
Length = 604
Score = 169 bits (423), Expect = 2e-40
Identities = 130/423 (30%), Positives = 200/423 (46%), Gaps = 54/423 (12%)
Query: 652 GKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPH 711
G+N +VA M +EGYN EDA++++ + + S R YE G E +IP
Sbjct: 203 GQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEATERRYPGGQED-RFEIPE 261
Query: 712 LEVHLLRN------LDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI--L 763
V R+ LD++G++ + V +GD+L+GK +P R L I
Sbjct: 262 KGVRGYRSERDYRHLDEDGIINPETEVSSGDVLIGKTSPP-----------RFLEEIDEF 310
Query: 764 GIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIK-VGDKVAG 822
G +ET + + G G V V GS I + ++R+ + +GDK A
Sbjct: 311 GTVAERRRETSVTVRHGEEGIVDAVLLTETVEGS----RLAKIRVREQRQPEFIGDKFAS 366
Query: 823 RHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHY 882
RHG KG+V I++++DMP+ +DG D++ NP +PSRM+VGQ+ E G A + R
Sbjct: 367 RHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRV 426
Query: 883 RIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVII 942
PF E++ L + A +T +++G TG E + I
Sbjct: 427 DGTPFTGEEEKDLKEALKANGFESAGVET---------------LYNGITGERIEAEIFI 471
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y KL H D+I+ RS G ++T+QP +GRA++GG R GEME L G A L
Sbjct: 472 GVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALAL 531
Query: 1003 QEMLTYKSDHIKAR--------------QEVLGTTIIGGTISKPVDAPESFRLLVRELRS 1048
+E L +SD +A ++ I + S PV+ +F+LL+ EL+S
Sbjct: 532 KERLLDESDKYEALVCAECGMIAIYDKIRDKKYCPICEDSESFPVEISYAFKLLLDELKS 591
Query: 1049 LAL 1051
L +
Sbjct: 592 LCI 594
>sp|P08266|RPB2_DROME DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2)
gb|AAF55024.1| (AE003703) RpII140 gene product [Drosophila melanogaster]
Length = 1176
Score = 168 bits (422), Expect = 3e-40
Identities = 258/1131 (22%), Positives = 441/1131 (38%), Gaps = 188/1131 (16%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIE------DTDQEIE----FQLFVETYQLVEPS 63
GL + Q + F FI + + P IE T E+E F L E L +P+
Sbjct: 39 GLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPT 98
Query: 64 IKEKD----------AVYESLTYSSELYVSAGLIWKNSKNI--------QEQTIFIGNIP 105
EKD A +LTYS+ LYV +KN+ Q Q FIG IP
Sbjct: 99 HWEKDGSPSPMMPNEARLRNLTYSAPLYVDI----TKTKNVEGLDPVETQHQKTFIGKIP 154
Query: 106 LM------------------------NSLGTSIVNGIYRIVINQILQSPGIYY------- 134
+M + G I+NG +++I Q + Y
Sbjct: 155 IMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDG 214
Query: 135 --------QSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSR-----KQKISIL 181
+S L+H S T T+ + R I +K+ I R+ KQ+I I+
Sbjct: 215 KYAFKTEIRSCLEHS--SRPTSTLWVNMMARGSQNI-KKSAIGQRIIAILPYIKQEIPIM 271
Query: 182 VLSSAMGSNLN-EILENVCY----PEIFLSFLNDKEEKKIGSKESAILEFYRQFACVGGD 236
++ A+G + +ILE++ Y PE+ +E + +++ L F +G
Sbjct: 272 IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF------IGAR 325
Query: 237 PVFPESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGM 296
P + ++ + K+ ++ + + ++ +++ R +L + +G
Sbjct: 326 GARP-GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS----LGR 380
Query: 297 KFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVR----GTICGAIRYKL-IPT 351
+ LDD +H NKR+ LL F L VR I + L +
Sbjct: 381 R----ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAI 436
Query: 352 PQNLVTSTPLTTTYESFFGLHP--------LSQVLDRTNPLTQIVHGRKLSYLGPGGLTG 403
N++T + +G +SQVL+R + + H R+++ P G G
Sbjct: 437 KTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVN--SPIGRDG 494
Query: 404 RTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKR 463
+ A + R +H++ +G +CP +T EG VGL+ +LA+ A I GS SP E E
Sbjct: 495 KLA--KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISV-GSQPSPILEFLEEWSM 551
Query: 464 IHMLYLSPSR--DEYYMIATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSF 521
++ ++PS D + G ++ +++ ++ + R++ I E +R I
Sbjct: 552 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611
Query: 522 Q---YFSIGASLIPFIEHNDANRALMSSNMQ--RQAVPLSQSEKCIVGTGLERQV-ALDS 575
+ Y G P + + + L ++++ ++ + S + +V +G+ + L+
Sbjct: 612 EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEE 671
Query: 576 GTLAIA------EHEGKIIYKDT------NKIVLFGSGETLSVPLVIYRRSNKNTCMHQK 623
T+ IA + + Y T + ++ G ++ +P + +S +NT
Sbjct: 672 ETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASI-IPFPDHNQSPRNTYQSAM 730
Query: 624 SQVQRGKCIKRGQILADGAATV------------------GGELSLGKNVLVAYMPWEGY 665
+ G I + D A V EL G N +VA + + GY
Sbjct: 731 GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGY 790
Query: 666 NSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRN-----L 720
N ED+V+++ V + S R Y+ + E K +RN L
Sbjct: 791 NQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKL 850
Query: 721 DKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG 780
D +G++ G V D+++GK + + SK
Sbjct: 851 DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRF----------SKRDASTFLRN 900
Query: 781 GRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMP 840
++D L GY + I + R ++GDK A RHG KG ++DM
Sbjct: 901 SETGIVDQVML-TLNSEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMA 957
Query: 841 YLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLV 900
+ +G D++ NP +PSRM +G + EC G G PF++ + +
Sbjct: 958 FTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFL 1017
Query: 901 FSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHG 960
Y G +++G TG V +G Y +L H VDDKIH
Sbjct: 1018 QEYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1063
Query: 961 RSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSD 1011
R+ G ++ +QP++GRA+ GG R GEME G A L+E L SD
Sbjct: 1064 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 1114
>pir||A75182 DNA-directed RNA polymerase (EC 2.7.7.6) chain B PAB0423 - Pyrococcus
abyssi (strain Orsay)
emb|CAB49536.1| (AJ248284) DNA-directed RNA polymerase, subunit B (rpoB (EC 2.7.7.6)
[Pyrococcus abyssi]
Length = 1117
Score = 168 bits (422), Expect = 3e-40
Identities = 131/423 (30%), Positives = 203/423 (47%), Gaps = 54/423 (12%)
Query: 652 GKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNK--I 709
G+N +VA + + GYN EDA++I+ + + S R YE + G T+K I
Sbjct: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQ---TDKFEI 772
Query: 710 PHLEVH------LLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAIL 763
P V R+LD++GL+ S VE D+L+G+ +P E R +
Sbjct: 773 PSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE---------RGLG 823
Query: 764 GIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGR 823
+ + +ET + + RG V V + + G G + + + + R ++GDK A R
Sbjct: 824 AVSLQERRETSVAVRPSERGVVDKV--IITETGDG--TKLVKVTVRDLRIPEIGDKFASR 879
Query: 824 HGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYR 883
HG KG++ I+ ++DMP+ + G D++ NP G+PSRM VGQ+ E G + R
Sbjct: 880 HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVD 939
Query: 884 IAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIG 943
F E++ ++L EL K T G+ ++DG TG FE + +G
Sbjct: 940 GTAFIGEPEEKLRKEL--EEL--GFKHT-----------GREIMYDGITGKRFEADIFVG 984
Query: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQ 1003
Y +L H V DKIH RS G ++T+QP +GRA++GG R GEME L G G A +L
Sbjct: 985 VIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLI 1044
Query: 1004 EMLTYKSD-----------HI----KARQEVLGTTIIGGTISKPVDAPESFRLLVRELRS 1048
E L +SD HI K R +V V+ +F+LL+ EL++
Sbjct: 1045 ERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKA 1104
Query: 1049 LAL 1051
+ +
Sbjct: 1105 MVI 1107
Score = 81.9 bits (199), Expect = 4e-14
Identities = 123/480 (25%), Positives = 200/480 (41%), Gaps = 68/480 (14%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIEDT--DQEIEF-QLFVETYQLVEPSIKEK--- 67
GL + + + FIDRGL E + +F I+ D E++F ++ V + EP + K
Sbjct: 26 GLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLY 85
Query: 68 --DAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQ 125
DA +LTYS+ LY+ + + + + + IG +P+M + G+ + Q
Sbjct: 86 PMDARIRNLTYSAPLYLEMIPVIRGIEQ-EPVEVRIGELPIMLKSKVCRLYGLSDDELRQ 144
Query: 126 ILQSPGIYYQSELDHKGISVYTGT---IISDWGGRLELEIDRKARIWARVSRKQKISILV 182
+ + P D G + G+ I+S +E +I + + R++K V
Sbjct: 145 LGEDPK-------DPGGYFIINGSERVIVS-----IE-DIAPNRTLVEKDERQEKYIAKV 191
Query: 183 LSSAMGSNLNEILENVCYPEIFLSFLN-DKEEKKIGSKESAILEFYRQFA-CVGGDPVFP 240
S G +E +++ N K K + + LE + VG DP
Sbjct: 192 FSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQ 251
Query: 241 ESLCREL--------QKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFL-----LPRDIL 287
+ L L Q++ + +L G+ R + +N L P D +
Sbjct: 252 QILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRI 311
Query: 288 TAADHLIGMKFRMGTL-------DDMNHLKNKRIRSVADLLQDQFGLALVRL-------- 332
A +L M ++ L DD +H NKR+R DLL+D F +A +L
Sbjct: 312 RKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQM 371
Query: 333 --------ENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPL 384
E V G I IR + P L T G +SQ+LDRTN +
Sbjct: 372 TKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPG-GRTGVSQLLDRTNYV 430
Query: 385 TQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
+ + H R+++ L F RD+H +H+GRICP +T EG N GL+ +LA+ A+I
Sbjct: 431 STLSHLRRVT----SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
>pir||A71032 probable DNA-directed RNA polymerase subunit B - Pyrococcus
horikoshii
dbj|BAA30657.1| (AP000006) 1117aa long hypothetical DNA-directed RNA polymerase
subunit B [Pyrococcus horikoshii]
Length = 1117
Score = 168 bits (422), Expect = 3e-40
Identities = 128/420 (30%), Positives = 202/420 (47%), Gaps = 48/420 (11%)
Query: 652 GKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGP-ERITNKIP 710
G+N +VA + + GYN EDA++I+ + + S R YE + G +R P
Sbjct: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPAP 775
Query: 711 HLEVH----LLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQ 766
+ + R+LD++GL+ S VE D+L+G+ +P E R + +
Sbjct: 776 TVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE---------RGLGAVS 826
Query: 767 VSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGN 826
+ +ET + + +G V V + + G G + + + + R ++GDK A RHG
Sbjct: 827 LQERRETSVAVRPSEKGIVDKV--IITETGDG--TKLVKVTVRDLRIPEIGDKFASRHGQ 882
Query: 827 KGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAP 886
KG++ I+ ++DMP+ + G D++ NP G+PSRM VGQ+ E G + R
Sbjct: 883 KGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTA 942
Query: 887 FDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPY 946
F E++ ++L EL K T G+ ++DG TG FE + IG Y
Sbjct: 943 FIGEPEEKLRKEL--EEL--GFKHT-----------GREIMYDGITGKRFEADIFIGIIY 987
Query: 947 ILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEML 1006
+L H V DKIH RS G ++T+QP +GRA++GG R GEME L G G A +L E L
Sbjct: 988 YQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERL 1047
Query: 1007 TYKSD-----------HI----KARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLAL 1051
+SD HI K R +V V+ +F+LL+ EL+++ +
Sbjct: 1048 LEESDKTEVWVCENCGHIAIEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1107
Score = 74.9 bits (181), Expect = 5e-12
Identities = 120/487 (24%), Positives = 201/487 (40%), Gaps = 82/487 (16%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIEDT--DQEIEF-QLFVETYQLVEPSIKEK--- 67
GL + + + FI+RGL E + +F I+ D E++F ++ V + EP + K
Sbjct: 26 GLVRQHLDSYNAFIERGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLY 85
Query: 68 --DAVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQ 125
DA +LTYS+ LY+ + + + + + IG +P+M + G+ + +
Sbjct: 86 PMDARIRNLTYSAPLYLEMIPVIRGIEQDPVE-VRIGELPIMLKSKACRLYGLSDEELIK 144
Query: 126 ILQSPGIYYQSELDHKGISVYTGT---IISDWGGRLELEIDRKARIWARVSRKQKISILV 182
+ + P D G + G+ I+S +E +I + + R++K V
Sbjct: 145 LGEDPK-------DPGGYFIINGSERVIVS-----IE-DIAPNRTLVEKDERQEKYIAKV 191
Query: 183 LSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAI-LEFYRQFA-CVGGDPVFP 240
S G +E +++ N K A+ LE + VG DP
Sbjct: 192 FSYRHGYRALVTVERKKDGILYVGIPNVPRPVKFVYVMRALGLERDKDIVDAVGNDPEVQ 251
Query: 241 ESLCREL--------QKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFL-----LPRDIL 287
+ L L Q++ + +L G+ R + +N L P D +
Sbjct: 252 QILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHMGVTPEDRI 311
Query: 288 TAADHLIGMKFRMGTL-------DDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTI 340
A +L M ++ L DD +H NKR+R DLL+D F +A +L
Sbjct: 312 RKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLIK------ 365
Query: 341 CGAIRYKLIPTPQ----------------NLVTSTPLTTTYESFF-------GLHPLSQV 377
I+Y++ T Q N + LT E G +SQ+
Sbjct: 366 --DIQYQMTKTYQRRGEKYVFSNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQL 423
Query: 378 LDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGS 437
LDRTN ++ + H R+++ L F RD+H +H+GRICP +T EG N GL+ +
Sbjct: 424 LDRTNYVSTLSHLRRVT----SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKN 479
Query: 438 LAIHARI 444
LA+ A+I
Sbjct: 480 LALMAQI 486
>gi|11499471 DNA-directed RNA polymerase, subunit B' (rpoB1) [Archaeoglobus
fulgidus]
sp|O28392|RPB1_ARCFU DNA-DIRECTED RNA POLYMERASE SUBUNIT B'
pir||F69485 DNA-directed RNA polymerase, subunit B' (rpoB1) homolog -
Archaeoglobus fulgidus
gb|AAB89366.1| (AE000972) DNA-directed RNA polymerase, subunit B' (rpoB1)
[Archaeoglobus fulgidus]
Length = 604
Score = 166 bits (417), Expect = 1e-39
Identities = 117/373 (31%), Positives = 184/373 (48%), Gaps = 35/373 (9%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITN 707
E G+N +VA + +EGYN EDA++++ V + SF R YE + G E
Sbjct: 199 ERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRTYESEEMRYPGGQED-KF 257
Query: 708 KIPHLEVHLLR------NLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRA 761
+IP ++ R +LD++GL+ + V D+L+G+ +P E P +
Sbjct: 258 EIPGADISGFRGAEAYAHLDEDGLIFPETEVGPDDVLIGRTSPPRFLEE---PTE----- 309
Query: 762 ILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVA 821
LGI +ET + + +G V V + +GGS + + + R ++GDK A
Sbjct: 310 -LGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGGS----KLAKVRVRDLRIPELGDKFA 364
Query: 822 GRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRH 881
RHG KG+V ++ +DMP+ + G D++ NP +PSRM VG + E G G + R
Sbjct: 365 SRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGHVLEMIGGKVGSLEGRR 424
Query: 882 YRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVI 941
+ F E++ L + Y S + GK ++DG TG + +
Sbjct: 425 VDGSLFHGESEEDLRATL---KKYGFS------------HTGKEVMYDGITGRRYLVDIF 469
Query: 942 IGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHI 1001
+G Y KL H V KIH RS G ++T+QP +GRA++GG R GEME L G G A +
Sbjct: 470 VGVIYYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAALL 529
Query: 1002 LQEMLTYKSDHIK 1014
L++ L +SD ++
Sbjct: 530 LKDRLLEESDKVE 542
>sp|P15351|RPB1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT B'
pir||S03573 DNA-directed RNA polymerase (EC 2.7.7.6) chain B' - Halobacterium
salinarum
emb|CAA40425.1| (X57144) RNA polymerase subunit B' [Halobacterium halobium]
gb|AAG20693.1| (AE005138) DNA-directed RNA polymerase subunit B'; RpoB'
[Halobacterium sp. NRC-1]
Length = 608
Score = 166 bits (415), Expect = 2e-39
Identities = 130/425 (30%), Positives = 204/425 (47%), Gaps = 57/425 (13%)
Query: 652 GKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPH 711
G+N +VA M +EG+N EDA++++ V + S R YE + G E +IP
Sbjct: 206 GQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTYEGEERRYPGGQED-RFEIPG 264
Query: 712 LEVHLLR------NLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGI 765
+V R +LD +GLV + V+ +L+GK +P E PED + G+
Sbjct: 265 DDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTSPPRFLEE---PED-----MGGL 316
Query: 766 QVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHG 825
+ET + + G G V V + + GS + + + +R ++GDK A RHG
Sbjct: 317 SPQKRRETSVTMRSGEDGVVDTVTLMEGEDGS----KLAKVSVRDERIPELGDKFASRHG 372
Query: 826 NKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIA 885
KG+V + ++DMP+ Q+G D+V NP +PSRM VG + E G AG + R
Sbjct: 373 QKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGRSVDGT 432
Query: 886 PFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNP 945
PF E E R + +++S GK ++ G +G E + +G
Sbjct: 433 PFTGEGEDEI-RGTLEDRGFKSS--------------GKEVMYSGVSGEKIEAEIFVGTI 477
Query: 946 YILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEM 1005
+ KL H V +K+H RS G ++T+QP +GRA++GG RVGEME + G G A +L+E
Sbjct: 478 FYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLKER 537
Query: 1006 LTYKSDHIKARQEV-----LGTTIIGGTISKPVDAPE--------------SFRLLVREL 1046
L SD R+E+ G T + + V P +F+LL+ E+
Sbjct: 538 LLDSSD----REEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLLDEM 593
Query: 1047 RSLAL 1051
++L +
Sbjct: 594 KALGI 598
Score = 34.4 bits (77), Expect = 7.4
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 492 QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQ 551
+EE I+ +E T + HL I F IGA +IP+ EHN + R M + M +Q
Sbjct: 107 EEEDILVGVEEEELTT---DHTHLE-IDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQ 162
Query: 552 AVPL 555
++ L
Sbjct: 163 SLGL 166
>emb|CAA29180.2| (X05709) RNA polymerase [Drosophila melanogaster]
Length = 1123
Score = 164 bits (412), Expect = 4e-39
Identities = 250/1097 (22%), Positives = 429/1097 (38%), Gaps = 182/1097 (16%)
Query: 42 EDTDQEIE----FQLFVETYQLVEPSIKEKD----------AVYESLTYSSELYVSAGLI 87
+ T E+E F L E L +P+ EKD A +LTYS+ LYV
Sbjct: 20 QHTSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDI--- 76
Query: 88 WKNSKNI--------QEQTIFIGNIPLM------------------------NSLGTSIV 115
+KN+ Q Q FIG IP+M + G I+
Sbjct: 77 -TKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFII 135
Query: 116 NGIYRIVINQILQSPGIYY---------------QSELDHKGISVYTGTIISDWGGRLEL 160
NG +++I Q + Y +S L+H S T T+ + R
Sbjct: 136 NGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHS--SRPTSTLWVNMMARGSQ 193
Query: 161 EIDRKARIWARVSR-----KQKISILVLSSAMGSNLN-EILENVCY----PEIFLSFLND 210
I +K+ I R+ KQ+I I+++ A+G + +ILE++ Y PE+
Sbjct: 194 NI-KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 252
Query: 211 KEEKKIGSKESAILEFYRQFACVGGDPVFPESLCRELQKKFFQQRCELGEIGRRNMNRRL 270
+E + +++ L F +G P + ++ + K+ ++ + + ++
Sbjct: 253 LDEAFVVQEQNVALNF------IGARGARP-GVTKDKRIKYAKEILQKEMLPHVGVSDFC 305
Query: 271 NLDIPQNNTFLLPRDILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALV 330
+++ R +L + +G + LDD +H NKR+ LL F
Sbjct: 306 ETKKAYFLGYMVHRLLLAS----LGRR----ELDDRDHYGNKRLDLAGPLLAFLFRGLFK 357
Query: 331 RLENMVR----GTICGAIRYKL-IPTPQNLVTSTPLTTTYESFFGLHP--------LSQV 377
L VR I + L + N++T + +G +SQV
Sbjct: 358 NLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQV 417
Query: 378 LDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGS 437
L+R + + H R+++ P G G+ A + R +H++ +G +CP +T EG VGL+ +
Sbjct: 418 LNRLTFASTLSHLRRVN--SPIGRDGKLA--KPRQLHNTLWGMLCPAETPEGAAVGLVKN 473
Query: 438 LAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSR--DEYYMIATGNYLALNQGNQEEQ 495
LA+ A I GS SP E E ++ ++PS D + G ++ +++ ++
Sbjct: 474 LALMAYISV-GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 532
Query: 496 IVPARYRQEFLTIAWEQVHLRSIFSFQ---YFSIGASLIPFIEHNDANRALMSSNMQ--R 550
+ R++ I E +R I + Y G P + + + L ++++ +
Sbjct: 533 ATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLK 592
Query: 551 QAVPLSQSEKCIVGTGL-ERQVALDSGTLAIA------EHEGKIIYKDT------NKIVL 597
+ + S + +V +G+ E L+ T+ IA + + Y T + ++
Sbjct: 593 ERDYNNYSWQVLVASGVVEYMYTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMI 652
Query: 598 FGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATV------------ 645
G ++ +P + +S +NT + G I + D A V
Sbjct: 653 LGVCASI-IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTR 711
Query: 646 ------GGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTS 699
EL G N +VA + + GYN ED+V+++ V + S R Y+ +
Sbjct: 712 SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRV 771
Query: 700 NGPERITNKIPHLEVHLLRN-----LDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAP 754
E K +RN LD +G++ G V D+++GK +
Sbjct: 772 GDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDS 831
Query: 755 EDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREI 814
+ SK ++D L GY + I + R
Sbjct: 832 NTKRF----------SKRDASTFLRNSETGIVDQVML-TLNSEGY--KFCKIRVRSVRIP 878
Query: 815 KVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLA 874
++GDK A RHG KG ++DM + +G D++ NP +PSRM +G + EC G
Sbjct: 879 QIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKL 938
Query: 875 GDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGT 934
G PF++ + + Y G +++G TG
Sbjct: 939 GSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLR--------------GNEVMYNGHTGR 984
Query: 935 PFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALE 994
V +G Y +L H VDDKIH R+ G ++ +QP++GRA+ GG R GEME
Sbjct: 985 KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI 1044
Query: 995 GFGVAHILQEMLTYKSD 1011
G A L+E L SD
Sbjct: 1045 SHGAAQFLRERLFEVSD 1061
>sp|P31814|RPOB_THECE DNA-DIRECTED RNA POLYMERASE SUBUNIT B
pir||S25563 DNA-directed RNA polymerase (EC 2.7.7.6) chain B - Thermococcus celer
emb|CAA47722.1| (X67313) Subunit B of DNA-dependent RNA polymerase [Thermococcus
celer]
Length = 1122
Score = 160 bits (400), Expect = 1e-37
Identities = 128/425 (30%), Positives = 203/425 (47%), Gaps = 49/425 (11%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGP-ERIT 706
E G+N +VA + + GYN EDA++++ + + S R YE + G +R
Sbjct: 716 ERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFE 775
Query: 707 NKIPHLEVHL----LRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI 762
P ++ +L R+LD++G++ S V D+LVG+ +P E +
Sbjct: 776 IPDPTIQGYLGERYYRHLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQ--------SGL 827
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAG 822
GI + +ET L + G V V + + G G + + + R + GDK A
Sbjct: 828 GGIILQERRETSLTVRPSETGVVDKV--IITETGDG--TKLVKVTTRDLRIPEFGDKFAS 883
Query: 823 RHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHY 882
RHG KG++ I+ ++DMP+ + G D++ NP G+PSRM VGQ+ E G + R
Sbjct: 884 RHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRV 943
Query: 883 RIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVII 942
F E++ ++L EL ++ G+ ++DG TG E V +
Sbjct: 944 DGTAFIGEPEEKLRKEL--EELGF-------------KHSGREVMYDGITGRRLEADVFV 988
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y +L H V DK+H RS G ++T+QP +GRA++GG R GEME L G G A +L
Sbjct: 989 GVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLL 1048
Query: 1003 QEMLTYKSD-----------HIKARQEVLGTT---IIG--GTISKPVDAPESFRLLVREL 1046
E L +SD HI + G + G ISK V+ +F+LL+ EL
Sbjct: 1049 IERLLEESDKTEVWVCENCGHIALEDKRRGKVYCPVCGEEERISK-VEMSYAFKLLLDEL 1107
Query: 1047 RSLAL 1051
+++ +
Sbjct: 1108 KAMGI 1112
Score = 69.9 bits (168), Expect = 2e-10
Identities = 49/164 (29%), Positives = 78/164 (46%), Gaps = 35/164 (21%)
Query: 304 DDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQ---------- 353
DD +H NKR++ DLL D F +A G + ++Y++ T Q
Sbjct: 337 DDKDHYANKRLKLAGDLLMDLFRVAF--------GQLVKDMQYQMTKTYQRKGERYTFEN 388
Query: 354 ------NLVTSTPLTTTYESFF-------GLHPLSQVLDRTNPLTQIVHGRKLSYLGPGG 400
N + L+ E G +SQ+LDRTN ++ + H R+++
Sbjct: 389 IQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYISTLSHLRRVT----SP 444
Query: 401 LTGRTASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
L+ F RD+H +H+GRICP +T EG N GL+ +LA+ ++I
Sbjct: 445 LSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQI 488
>sp|Q03587|RPOB_THEAC DNA-DIRECTED RNA POLYMERASE SUBUNIT B
pir||S26722 DNA-directed RNA polymerase (EC 2.7.7.6) chain B - Thermoplasma
acidophilum
emb|CAA48280.1| (X68198) DNA-directed RNA polymerase [Thermoplasma acidophilum]
emb|CAC11534.1| (AL445064) probable DNA-directed RNA polymerase chain B [Thermoplasma
acidophilum]
Length = 1195
Score = 159 bits (397), Expect = 2e-37
Identities = 125/429 (29%), Positives = 200/429 (46%), Gaps = 53/429 (12%)
Query: 652 GKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPH 711
G+N +VA + +EGYN +DA++I+ + + S R Y + G E +IP
Sbjct: 793 GQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRTYSAEERRYPGGQED-KFEIPT 851
Query: 712 LEV------HLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGI 765
++ +NLD +G++ ++VE D+L+GK +P E E+RL G
Sbjct: 852 HDIIGARAEEYYKNLDDSGIIFPEAYVEGSDVLIGKTSPPRFLEEG---EERL-----GP 903
Query: 766 QVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHG 825
Q +E+ + + G V +V + N + I + +R ++GDK A RHG
Sbjct: 904 Q--RRRESSVTMRPNESGYVDNVFLTVSES----NSRVVKIKVRSERIPELGDKFASRHG 957
Query: 826 NKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIA 885
KG+V ++ ++DMP+ +DG D++FNP +PSRM VG I E G R
Sbjct: 958 QKGVVGLVVPQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFIDGT 1017
Query: 886 PFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNP 945
F E+ LV ++S + ++DG TG F+ + +G
Sbjct: 1018 IFSGEPEKSLRDALVKYGFRKSSTEV---------------MYDGITGRRFKADIFVGVI 1062
Query: 946 YILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEM 1005
Y KL H V K H RS G ++T+QP +GR++QGG R GEME L G A ++++
Sbjct: 1063 YYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIKDR 1122
Query: 1006 LTYKSD-------------HI---KARQEVLGTTIIGGTIS-KPVDAPESFRLLVRELRS 1048
L +SD HI R+ L + G T + P++ +F+L+ EL S
Sbjct: 1123 LLDQSDGTVLYVCGNPSCGHIAIYDRRKGTLRCPVCGNTGNIYPIETSYAFKLMRDELIS 1182
Query: 1049 LALELNHFL 1057
L + + L
Sbjct: 1183 LGVVMRLML 1191
Score = 67.1 bits (161), Expect = 1e-09
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 17/208 (8%)
Query: 304 DDMNHLKNKRIRSVADLLQDQFGLA----LVRLENMVRGTICGAIRYKLIPTP-QNLVTS 358
DD +HL NKRI+ DL+ + F A + L+ + T K+ P Q+L+T
Sbjct: 379 DDKDHLANKRIKLAGDLMDELFRSAFQSVMKDLKYQLEKTYNRKRGIKIRPAVRQDLLTQ 438
Query: 359 TPL--TTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSS 416
L +T G +SQ+LDR + L+ I H R++ + P LT F RD+H +
Sbjct: 439 RVLHAMSTGNWIGGRTGVSQLLDRVSNLSTISHLRRI--ISP--LTRTQPHFEARDLHPT 494
Query: 417 HYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEY 476
+GRICP +T EG N GL+ + A+ + + G EI + +L SP +
Sbjct: 495 QWGRICPNETPEGQNCGLVKNAALLINVTQ-GIDPDSVMEILKGMDVREVLEESPKKGRV 553
Query: 477 YMIATGNYLALNQGNQEEQIVPARYRQE 504
Y+ G+++ + + + + +R R+E
Sbjct: 554 YL--NGDFIGY---HDDPRYLVSRIREE 576
>sp|Q60181|RPB1_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT B'
pir||H64429 DNA-directed RNA polymerase (EC 2.7.7.6) subunit B' - Methanococcus
jannaschii
gb|AAB99044.1| (U67546) DNA-directed RNA polymerase, subunit B' (rpoB1)
[Methanococcus jannaschii]
Length = 636
Score = 157 bits (394), Expect = 5e-37
Identities = 113/367 (30%), Positives = 177/367 (47%), Gaps = 37/367 (10%)
Query: 652 GKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPH 711
G+N +VA M +EGYN EDA++ + + + S R Y+ G + +IP
Sbjct: 208 GQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYPGG-QMDRFEIPD 266
Query: 712 LEVHLLRN------LDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGI 765
V R+ L+++G+V + S V+ GD++VGK +P E + I
Sbjct: 267 KGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLEEHE----------ITI 316
Query: 766 QVSTSK-ETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRH 824
QV + ++ + + G G + V K G+ + + + R ++GDK A RH
Sbjct: 317 QVKPQRRDSSVVVRHGEEGYIDKVILTETKEGN----RLVKVKVRDLRIPELGDKFASRH 372
Query: 825 GNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRI 884
G KG++ + ++D+P+ + G D++ NP +PSRM VGQ+ E G G + R
Sbjct: 373 GQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGALEGRRIDG 432
Query: 885 APFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGN 944
F E + + L ++ GK ++DG+TG FE + IG
Sbjct: 433 TIFSGEKEWDLRKALEALGF---------------KHHGKEVMYDGKTGKKFEVEIYIGI 477
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y KL H V KIH RS G ++T+QP +GRA++GG R GEME L G G A +L+E
Sbjct: 478 AYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKE 537
Query: 1005 MLTYKSD 1011
L +SD
Sbjct: 538 RLMDESD 544
>gb|AAD13874.1|S54288_1 (S54288) Unknown [Helianthus]
Length = 98
Score = 156 bits (391), Expect = 1e-36
Identities = 77/98 (78%), Positives = 85/98 (86%), Gaps = 2/98 (2%)
Query: 9 MSTLPGLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKD 68
MST+PG NQIQFEGFCRFID+GL EEL KFPKIEDT+QEI+F+ F+E YQLVEP IKE+D
Sbjct: 1 MSTIPGFNQIQFEGFCRFIDQGLAEELSKFPKIEDTNQEIDFEFFLERYQLVEPLIKERD 60
Query: 69 AVYESLTYSSELYVSAGLIWKNSKN--IQEQTIFIGNI 104
AVYESLTYSSELYVSA LIWKN + IQEQTI IG I
Sbjct: 61 AVYESLTYSSELYVSARLIWKNDRRRYIQEQTILIGKI 98
>sp|P41557|RPB1_METVA DNA-DIRECTED RNA POLYMERASE SUBUNIT B'
pir||S47161 DNA-directed RNA polymerase (EC 2.7.7.6) - Methanococcus vannielii
emb|CAA51727.1| (X73293) DNA-directed RNA polymerase [Methanococcus vannielii]
Length = 614
Score = 156 bits (390), Expect = 1e-36
Identities = 116/367 (31%), Positives = 172/367 (46%), Gaps = 37/367 (10%)
Query: 652 GKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNG-------PER 704
G+N +VA M +EGYN EDA +I+ + + S R YE G PE+
Sbjct: 207 GQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEK 266
Query: 705 ITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILG 764
E + RNL +GL+ L S V +GD+++GK +P E + I
Sbjct: 267 GVRGYRAEEAY--RNLGDDGLIDLESEVRSGDVILGKTSPPRFLEE---------QEITL 315
Query: 765 IQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRH 824
S ++T + + G G V V K G+ + + R + GDK A RH
Sbjct: 316 QTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLGK----VRVRDLRVPEFGDKFASRH 371
Query: 825 GNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRI 884
G KG++ ++ ++D+P+ +DG D++ NP +PSRM +GQ+ E G G + R
Sbjct: 372 GQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECRRVDG 431
Query: 885 APFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGN 944
F E L E Y + + GK ++DG+TG E + +G
Sbjct: 432 TIFSGEGEWALRHAL---ENYGFT------------HSGKETMYDGKTGRKLECEIFVGV 476
Query: 945 PYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQE 1004
Y KL H V KIH RS G ++T+QP +GRA++GG R GEME L G A +L+E
Sbjct: 477 AYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAALLLKE 536
Query: 1005 MLTYKSD 1011
L +SD
Sbjct: 537 RLLDESD 543
>pir||T16011 hypothetical protein F09F7.3 - Caenorhabditis elegans
gb|AAA50695.1| (U00050) similarity across entire gene to DNA-directed RNA polymerase
[Caenorhabditis elegans]
Length = 1207
Score = 156 bits (390), Expect = 1e-36
Identities = 207/829 (24%), Positives = 338/829 (39%), Gaps = 133/829 (16%)
Query: 303 LDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTP--------QN 354
LDD + NKR+ LL F R + ++ A+ K + P Q+
Sbjct: 417 LDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALM-KTMAAPLDIVKHMRQD 475
Query: 355 LVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASF------ 408
++T+T + + + ++R +TQ++ +LSY+ G+ R S
Sbjct: 476 MITNTIVNAMSTGNWIIKRFR--MERLG-VTQVLS--RLSYISALGMMTRINSTFEKTRK 530
Query: 409 --RIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERS--KRI 464
R + S +G +CP DT EG GL+ +LA+ + I S E P + S + +
Sbjct: 531 VSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITT-DSDEKPVLRLLLNSGVEDL 589
Query: 465 HMLYLSPSRDEYYMIATGNYLALNQGNQEEQIVPA-------RYRQEFLTIAWEQVHLRS 517
H ++ S + N + + E++V A EF++++ + RS
Sbjct: 590 HNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSLTN-RS 648
Query: 518 IFSFQYFSIGASLI-PFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSG 576
+F S G L P+I + L +++Q E V G+ + ++
Sbjct: 649 VF---ISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMIFED-FVDDGIVEYLDVNEM 704
Query: 577 TLAIAEHEGKIIYKDTNKI-----VLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKC 631
A+ G+ I +T + L G L +P + +S +NT + G
Sbjct: 705 NDALIAVYGREIGPETTHLEIEPFTLLGVCAGL-IPYPHHNQSPRNTYQCAMGKQAMGTI 763
Query: 632 IKRGQILADGAA------------------TVGGELSLGKNVLVAYMPWEGYNSEDAVLI 673
Q D T +L G N ++A M + GY+ EDA+++
Sbjct: 764 AYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVL 823
Query: 674 S----DR-----LVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPHLEVHLLRNLDKNG 724
+ DR LVY+ + + +KY QT GP N + H +NLD+ G
Sbjct: 824 NKASLDRGYGRCLVYKHVKGT--AKKYPNQTFDRLLGPALDPNTRKPIFKH--KNLDQEG 879
Query: 725 LVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGR 784
+V G+ + ++ K P ++ ES G S S T IG GR
Sbjct: 880 IVFAGARIMPKQTIINKHMPVVSGES-------------GPGASASANT-----IGIAGR 921
Query: 785 VIDVRWLH-----------KKGGSGYNPETIHIY---ILQKREIKVGDKVAGRHGNKGIV 830
+D + + ++ YN + H++ + Q R ++GDK + RHG KG+
Sbjct: 922 QVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVC 981
Query: 831 SKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDER 890
I ++DMP+ G DM+ NP G PSRM VG++ E G AG V ++ F
Sbjct: 982 GLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGD 1041
Query: 891 YEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYILKL 950
++ +L Y GK + G TG P + G Y KL
Sbjct: 1042 QVKDVCEELAACGY---------------NYMGKDMLTSGITGQPLSAYIYFGPIYYQKL 1086
Query: 951 IHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS 1010
H V DK+H R+ G A +T+QP +GR+++GG R+GEME L +G + +L E L S
Sbjct: 1087 KHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSS 1146
Query: 1011 DHIKARQEVLGTTIIG--GTISK--------PVDAPESFRLLVRELRSL 1049
D K G +IG G K + P + +LL +EL+S+
Sbjct: 1147 DEFKV-DVCTGCGVIGSKGWCQKCRSSKSMANIKIPYACKLLFQELQSM 1194
>pir||T05846 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
Arabidopsis thaliana
emb|CAB36815.1| (AL035527) DNA-directed RNA polymerase (EC 2.7.7.6) II second largest
chain [Arabidopsis thaliana]
emb|CAB81278.1| (AL161555) DNA-directed RNA polymerase (EC 2.7.7.6) II second largest
chain [Arabidopsis thaliana]
Length = 1188
Score = 154 bits (385), Expect = 6e-36
Identities = 117/424 (27%), Positives = 186/424 (43%), Gaps = 50/424 (11%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY-----EIQTHVTSNGP 702
+L G N +VA + GYN ED+V+++ + + S R Y ++ T V +
Sbjct: 779 QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 838
Query: 703 ERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI 762
+ LD +GL G+ V D+++GK TP ++++ + R R
Sbjct: 839 RPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQGQSSRYTRRD 897
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAG 822
I + S+ G V V G + + + + R ++GDK +
Sbjct: 898 HSISLRHSET----------GMVDQVLLTTNADGLRF----VKVRVRSVRIPQIGDKFSS 943
Query: 823 RHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHY 882
RHG KG V ++DMP+ +G D++ NP +PSRM +GQ+ EC +G + +
Sbjct: 944 RHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1003
Query: 883 RIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVII 942
PF + S+ L ++ Q G R+++G TG P + +
Sbjct: 1004 DATPFTDVTVDNISKAL-----HKCGYQMR----------GFERMYNGHTGRPLTAMIFL 1048
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y +L H VDDKIH R G ++T+QP +GR++ GG R GEME + G AH L
Sbjct: 1049 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 1108
Query: 1003 QEMLTYKSDHIKARQ-EVLGTTIIGG--------------TISKPVDAPESFRLLVRELR 1047
+E L +SD + EV G I T V P + +LL +EL
Sbjct: 1109 KERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELM 1168
Query: 1048 SLAL 1051
S+A+
Sbjct: 1169 SMAI 1172
Score = 54.3 bits (128), Expect = 8e-06
Identities = 121/547 (22%), Positives = 204/547 (37%), Gaps = 109/547 (19%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIE----------------DTDQEIEF-QLFVET 56
GL + Q + F FI + E + + IE +T +I F Q+++
Sbjct: 38 GLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSK 97
Query: 57 YQLVEP-----SIKEKDAVYESLTYSSELYVSAGL-IWKNSKNIQEQT-------IFIGN 103
+ E ++ K A +LTYS+ LYV + K + +E T +FIG
Sbjct: 98 PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGK 157
Query: 104 IPLM------------------------NSLGTSIVNGIYRIVINQILQSPGIYYQSELD 139
+P+M + G I+NG +++I Q S Y +
Sbjct: 158 VPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 217
Query: 140 HKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK----------------QKISILVL 183
Y G + S + R+ AR S K +I I+++
Sbjct: 218 QPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIV 277
Query: 184 SSAMGSNLN-EILENVCYPEIFLSFLN----DKEEKKIGSKESAILEFY-RQFACVGGDP 237
A+G + +ILE++CY + EE + + L++ ++ A VG
Sbjct: 278 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTK 337
Query: 238 VFPESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMK 297
R++ +K +GE +++ R +L A +G +
Sbjct: 338 EKRIKYARDILQKEMLPHVGIGEHCETKKAYYFG--------YIIHRLLLCA----LGRR 385
Query: 298 FRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICG------------AIR 345
DD +H NKR+ LL F + +L VR + AI+
Sbjct: 386 PE----DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIK 441
Query: 346 YKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRT 405
K I + +T + +SQVL+R + + H R+L+ P G G+
Sbjct: 442 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKL 499
Query: 406 ASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIH 465
A + R +H+S +G +CP +T EG GL+ +LA+ I GS P E E +
Sbjct: 500 A--KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTEN 556
Query: 466 MLYLSPS 472
+SPS
Sbjct: 557 FEEISPS 563
>pir||S30229 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
Arabidopsis thaliana
emb|CAA79528.1| (Z19121) RNA polymerase II second largest subunit [Arabidopsis
thaliana]
Length = 1188
Score = 154 bits (385), Expect = 6e-36
Identities = 117/424 (27%), Positives = 186/424 (43%), Gaps = 50/424 (11%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY-----EIQTHVTSNGP 702
+L G N +VA + GYN ED+V+++ + + S R Y ++ T V +
Sbjct: 779 QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 838
Query: 703 ERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI 762
+ LD +GL G+ V D+++GK TP ++++ + R R
Sbjct: 839 RPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQGQSSRYTRRD 897
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAG 822
I + S+ G V V G + + + + R ++GDK +
Sbjct: 898 HSISLRHSET----------GMVDQVLLTTNADGLRF----VKVRVRSVRIPQIGDKFSS 943
Query: 823 RHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHY 882
RHG KG V ++DMP+ +G D++ NP +PSRM +GQ+ EC +G + +
Sbjct: 944 RHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1003
Query: 883 RIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVII 942
PF + S+ L ++ Q G R+++G TG P + +
Sbjct: 1004 DATPFTDVTVDNISKAL-----HKCGYQMR----------GFERMYNGHTGRPLTAMIFL 1048
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y +L H VDDKIH R G ++T+QP +GR++ GG R GEME + G AH L
Sbjct: 1049 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 1108
Query: 1003 QEMLTYKSDHIKARQ-EVLGTTIIGG--------------TISKPVDAPESFRLLVRELR 1047
+E L +SD + EV G I T V P + +LL +EL
Sbjct: 1109 KERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELM 1168
Query: 1048 SLAL 1051
S+A+
Sbjct: 1169 SMAI 1172
Score = 53.1 bits (125), Expect = 2e-05
Identities = 121/547 (22%), Positives = 204/547 (37%), Gaps = 109/547 (19%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIE----------------DTDQEIEF-QLFVET 56
GL + Q + F FI + E + + IE +T +I F Q+++
Sbjct: 38 GLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSK 97
Query: 57 YQLVEP-----SIKEKDAVYESLTYSSELYVSAGL-IWKNSKNIQEQT-------IFIGN 103
+ E ++ K A +LTYS+ LYV + K + +E T +FIG
Sbjct: 98 PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGK 157
Query: 104 IPLM------------------------NSLGTSIVNGIYRIVINQILQSPGIYYQSELD 139
+P+M + G I+NG +++I Q S Y +
Sbjct: 158 VPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 217
Query: 140 HKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK----------------QKISILVL 183
Y G + S + R+ AR S K +I I+++
Sbjct: 218 QPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIV 277
Query: 184 SSAMGSNLN-EILENVCYPEIFLSFLN----DKEEKKIGSKESAILEFY-RQFACVGGDP 237
A+G + +ILE++CY + EE + + L++ ++ A VG
Sbjct: 278 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTK 337
Query: 238 VFPESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMK 297
R++ +K +GE +++ R +L A +G +
Sbjct: 338 EKRIKYARDILQKEMLLYVGIGEHCETKKAYYFG--------YIIHRLLLCA----LGRR 385
Query: 298 FRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICG------------AIR 345
DD +H NKR+ LL F + +L VR + AI+
Sbjct: 386 PE----DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIK 441
Query: 346 YKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRT 405
K I + +T + +SQVL+R + + H R+L+ P G G+
Sbjct: 442 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKL 499
Query: 406 ASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIH 465
A + R +H+S +G +CP +T EG GL+ +LA+ I GS P E E +
Sbjct: 500 A--KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTEN 556
Query: 466 MLYLSPS 472
+SPS
Sbjct: 557 FEEISPS 563
>pir||S70415 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
Euplotes octocarinatus
emb|CAA47069.1| (X66453) DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 1194
Score = 152 bits (381), Expect = 2e-35
Identities = 169/681 (24%), Positives = 288/681 (41%), Gaps = 85/681 (12%)
Query: 374 LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVG 433
+SQVL+R + + H R+L+ P +G+ + R +H++H+G +CP +T EG G
Sbjct: 492 VSQVLNRLTFASTLSHLRRLNT--PLQKSGKLT--KPRQLHNTHWGMVCPAETPEGQACG 547
Query: 434 LIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPS--RDEYYMIATGNYLALNQGN 491
L+ +L++ A + GS EI E +++ +SPS + + G ++ ++
Sbjct: 548 LVKNLSLMAFVSV-GSAAERLREILENYGTENLVSISPSDIHESTKVFVNGCWIGIHN-E 605
Query: 492 QEEQIVPARYRQEFLTIAWEQVHLRSIFSFQ---YFSIGASLIPFIEHNDANRALMSSNM 548
E+ I + + L I E +R I + + Y G P +D L +++
Sbjct: 606 SEDLINNIKLMRRALLIPKEISIVRDIPNREVKFYTDHGRVQRPLFIVDDNRLILKKTHV 665
Query: 549 QR-QAVPLSQS--------EKCIVGTGLERQ----VALDSGTLAIAEHEGKIIYKDTNKI 595
R Q S S E + +E + +A++ G L + + + +
Sbjct: 666 VRLQDHERSDSMNFDDTLKEGLVEFLDVEEEETSMIAMNVGDLENRNYCSTYTHCEIHPS 725
Query: 596 VLFGSGETLSVPLVIYRRSNKNTCMHQKSQVQRGKCIKRGQILADGAATV---------- 645
++ G ++ +P + +S +N + G QI D A V
Sbjct: 726 MILGVCASI-IPFPDHNQSPRNCYQSAMGKQAMGVYCSNYQIRMDTLAHVLYYPQKPLVV 784
Query: 646 --------GGELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTS-FHIRKYEIQTH 696
EL G + +VA + GYN D+V++S + + S F+ +EI
Sbjct: 785 ARSLDFPHVKELPPGCDSIVAITCYTGYNQVDSVIMSQAPIDRGCFRSVFYKNIFEIPVR 844
Query: 697 VTSNGPERITNKIPHLEVHLLRN-----LDKNGLVILGSWVEAGDILVGKLT-PQMAKES 750
V ER+ + P V RN LD +GL+ G V DI++GK P+
Sbjct: 845 V-----ERLL-RYPDSTVVGRRNGDYTKLDIDGLIFPGKNVLGDDIIIGKTALPRNLFND 898
Query: 751 SYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQ 810
+ L++ K+ L +G + V + G + +
Sbjct: 899 EMDDQTNLIK----------KDDSTSLRHSEKGIIDSVILTSNEEGDSFTKVKMRAI--- 945
Query: 811 KREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECS 870
R ++GDK A RHG KG V ++D+P+ Q+G D++ NP +PSRM +G + EC
Sbjct: 946 -RIPQIGDKFASRHGQKGTVGMTYRQEDIPFTQEGIIPDIIVNPHAIPSRMTIGHLIECL 1004
Query: 871 LGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDG 930
PF Q+ + + + ++L++ Q G ++DG
Sbjct: 1005 ASKVACFKGEEGDATPF-----QDVTVEHISNDLHRLGYQKR----------GNEVMYDG 1049
Query: 931 RTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEV 990
TG + + +G Y +L H VDDKIH RS G ++T+QP +GR++ GG R GEME
Sbjct: 1050 WTGRKMDTMIFLGPTYYQRLKHMVDDKIHSRSRGPLQILTRQPTEGRSRHGGLRFGEMER 1109
Query: 991 WALEGFGVAHILQEMLTYKSD 1011
+ G A L+E L SD
Sbjct: 1110 DCMVSHGAARFLKERLFDVSD 1130
>sp|P38420|RPB2_ARATH DNA-DIRECTED RNA POLYMERASE II 135 KDA POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2)
pir||S30228 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
Arabidopsis thaliana
emb|CAA79527.1| (Z19120) RNA polymerase II second largest subunit [Arabidopsis
thaliana]
Length = 1188
Score = 152 bits (380), Expect = 2e-35
Identities = 117/424 (27%), Positives = 185/424 (43%), Gaps = 50/424 (11%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY-----EIQTHVTSNGP 702
+L G N VA + GYN ED+V+++ + + S R Y ++ T V +
Sbjct: 779 QLPAGINANVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 838
Query: 703 ERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI 762
+ LD +GL G+ V D+++GK TP ++++ + R R
Sbjct: 839 RPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQGQSSRYTRRD 897
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAG 822
I + S+ G V V G + + + + R ++GDK +
Sbjct: 898 HSISLRHSET----------GMVDQVLLTTNADGLRF----VKVRVRSVRIPQIGDKFSS 943
Query: 823 RHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHY 882
RHG KG V ++DMP+ +G D++ NP +PSRM +GQ+ EC +G + +
Sbjct: 944 RHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1003
Query: 883 RIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVII 942
PF + S+ L ++ Q G R+++G TG P + +
Sbjct: 1004 DATPFTDVTVDNISKAL-----HKCGYQMR----------GFERMYNGHTGRPLTAMIFL 1048
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y +L H VDDKIH R G ++T+QP +GR++ GG R GEME + G AH L
Sbjct: 1049 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 1108
Query: 1003 QEMLTYKSDHIKARQ-EVLGTTIIGG--------------TISKPVDAPESFRLLVRELR 1047
+E L +SD + EV G I T V P + +LL +EL
Sbjct: 1109 KERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELM 1168
Query: 1048 SLAL 1051
S+A+
Sbjct: 1169 SMAI 1172
Score = 53.1 bits (125), Expect = 2e-05
Identities = 121/547 (22%), Positives = 204/547 (37%), Gaps = 109/547 (19%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIE----------------DTDQEIEF-QLFVET 56
GL + Q + F FI + E + + IE +T +I F Q+++
Sbjct: 38 GLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSK 97
Query: 57 YQLVEP-----SIKEKDAVYESLTYSSELYVSAGL-IWKNSKNIQEQT-------IFIGN 103
+ E ++ K A +LTYS+ LYV + K + +E T +FIG
Sbjct: 98 PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGK 157
Query: 104 IPLM------------------------NSLGTSIVNGIYRIVINQILQSPGIYYQSELD 139
+P+M + G I+NG +++I Q S Y +
Sbjct: 158 VPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 217
Query: 140 HKGISVYTGTIISDWGGRLELEIDRKARIWARVSRK----------------QKISILVL 183
Y G + S + R+ AR S K +I I+++
Sbjct: 218 QPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIV 277
Query: 184 SSAMGSNLN-EILENVCYPEIFLSFLN----DKEEKKIGSKESAILEFY-RQFACVGGDP 237
A+G + +ILE++CY + EE + + L++ ++ A VG
Sbjct: 278 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTK 337
Query: 238 VFPESLCRELQKKFFQQRCELGEIGRRNMNRRLNLDIPQNNTFLLPRDILTAADHLIGMK 297
R++ +K +GE +++ R +L A +G +
Sbjct: 338 EKRIKYARDILQKEMLLYVGIGEHCETKKAYYFG--------YIIHRLLLCA----LGRR 385
Query: 298 FRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICG------------AIR 345
DD +H NKR+ LL F + +L VR + AI+
Sbjct: 386 PE----DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIK 441
Query: 346 YKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRT 405
K I + +T + +SQVL+R + + H R+L+ P G G+
Sbjct: 442 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKL 499
Query: 406 ASFRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIH 465
A + R +H+S +G +CP +T EG GL+ +LA+ I GS P E E +
Sbjct: 500 A--KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTEN 556
Query: 466 MLYLSPS 472
+SPS
Sbjct: 557 FEEISPS 563
>sp|P11513|RPOB_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT B
pir||S04716 DNA-directed RNA polymerase (EC 2.7.7.6) chain B [validated] -
Sulfolobus acidocaldarius
emb|CAA32924.1| (X14818) RNA polymerase subunit B (AA 1-1126) [Sulfolobus
acidocaldarius]
Length = 1126
Score = 152 bits (379), Expect = 3e-35
Identities = 112/423 (26%), Positives = 194/423 (45%), Gaps = 54/423 (12%)
Query: 652 GKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITNKIPH 711
G N ++A M + GYN ED+++++ + +Y S R Y + G E +KI
Sbjct: 717 GANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGGQE---DKIVT 773
Query: 712 LEVHL--------LRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAIL 763
E + R L+ NG+V V+ GD+L+GK++P R L+
Sbjct: 774 PEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPP-----------RFLQEFK 822
Query: 764 GIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGR 823
+ +K + G ++D+ + + + + + + R ++GDK A R
Sbjct: 823 ELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGN---KLVKVRVRDLRIPEIGDKFATR 879
Query: 824 HGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYR 883
HG KG+V ++ + DMPY G D++ NP +PSRM +GQI E G + +
Sbjct: 880 HGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVD 939
Query: 884 IAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIG 943
PF E + + +K E+ + + + ++DGRTG + ++ G
Sbjct: 940 ATPFLETPKLQEMQK----EILKLGHLPDSTEV----------VYDGRTGQKLKSRILFG 985
Query: 944 NPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQ 1003
Y KL H V DK+H R+ G ++T+QP +GRA++GG R GEME L GFG A +++
Sbjct: 986 IVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIK 1045
Query: 1004 EMLT---------------YKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRS 1048
+ L Y + +++ + ++ PV +F+LL++EL S
Sbjct: 1046 DRLLDNSYKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMS 1105
Query: 1049 LAL 1051
+ +
Sbjct: 1106 MVI 1108
Score = 69.5 bits (167), Expect = 2e-10
Identities = 113/491 (23%), Positives = 204/491 (41%), Gaps = 95/491 (19%)
Query: 14 GLNQIQFEGFCRFIDRGLTEELFKFPKIEDTDQEIEFQLFVETYQLVEPSIKEKD----- 68
GL + + F F+ L + +++ +I ++ +L Y+ +PSI+E D
Sbjct: 19 GLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEVPGLKIKLGKIRYE--KPSIRETDKGPMR 76
Query: 69 ------AVYESLTYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIV 122
A +LTYSS +++S + N + + I+IG++P+M S+ + +
Sbjct: 77 EITPMEARLRNLTYSSPIFLSMIPVENNIEG-EPIEIYIGDLPIMLK---SVADPTSNLP 132
Query: 123 INQILQ------SPGIYYQSELDHKGI----SVYTGTIISDWGGRLELEIDRKARIWARV 172
I+++++ PG Y+ K I + T ++ D+G + + +
Sbjct: 133 IDKLIEIGEDPKDPGGYFIVNGSEKMIIAQEDLATNRVLVDYG-----------KSGSNI 181
Query: 173 SRKQKISILVLSSAMGSNLNEILENVCYPEIFLSFLNDKEEKKIGSKESAILEFYRQFA- 231
+ K++ SSA G + ++E + I +SF G AI+ F
Sbjct: 182 THVAKVT----SSAAGYRVQVMIERLKDSTIQISFATVP-----GRIPFAIIMRALGFVT 232
Query: 232 ------CVGGDPVFPESLCRELQKKFFQQRCE-----LGE---IGRRNMNRRLNLDIPQN 277
V DP L L++ E +G IG++ NR + +
Sbjct: 233 DRDIVYAVSLDPQIQNELLPSLEQASSITSAEEALDFIGNRVAIGQKRENRIQKAEQVID 292
Query: 278 NTFL-----LPRD-------ILTAADHLIGMKFRMGTLDDMNHLKNKRIRSVADLLQDQF 325
FL P D + +A + ++ + DD +H NKR+R DL F
Sbjct: 293 KYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLF 352
Query: 326 GLA--------LVRLE-NMVRG---TICGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHP 373
+A + +LE + VRG ++ +R +I +T G
Sbjct: 353 RVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRADIITERIRHALATGNWVG-----GRTG 407
Query: 374 LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVG 433
+SQ+LDRTN L+ + H R++ L +F RD+H + +GR+CP +T EG N G
Sbjct: 408 VSQLLDRTNWLSMLSHLRRVV----SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSG 463
Query: 434 LIGSLAIHARI 444
L+ +LA+ A++
Sbjct: 464 LVKNLALLAQV 474
>pir||S39579 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - barley
chloroplast (fragment)
emb|CAA51929.1| (X73526) RNA polymerase [Hordeum vulgare]
Length = 86
Score = 150 bits (376), Expect = 6e-35
Identities = 73/86 (84%), Positives = 79/86 (90%)
Query: 130 PGIYYQSELDHKGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGS 189
PGIYY+SELDHKGIS+YTGTIISDWGGR EL ID+K RIWARVSRKQKISILVLSSAMGS
Sbjct: 1 PGIYYRSELDHKGISIYTGTIISDWGGRSELAIDKKERIWARVSRKQKISILVLSSAMGS 60
Query: 190 NLNEILENVCYPEIFLSFLNDKEEKK 215
NL EIL+NV YPEIFLSF N KE+K+
Sbjct: 61 NLREILDNVSYPEIFLSFPNAKEKKR 86
>gb|AAF58590.1| (AE003823) RpIII128 gene product [Drosophila melanogaster]
Length = 1137
Score = 146 bits (366), Expect = 1e-33
Identities = 117/378 (30%), Positives = 184/378 (47%), Gaps = 51/378 (13%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLIS----DR-----LVYEDIYTSFHIRKYEIQTHVT 698
+L G+N VA M + GY+ EDA++++ DR LVY++ + +++Y QT
Sbjct: 739 KLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKN--SKCTVKRYANQTFDR 796
Query: 699 SNGP--ERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPED 756
GP + +TNK+ + LD +G+V G V+ I++ K P + +
Sbjct: 797 IMGPMKDALTNKV----IFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNP----- 847
Query: 757 RLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYIL--QKREI 814
+Q +++ +PI +G + ++ + S E I IL Q R
Sbjct: 848 --------LQGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEEDFLIKILLRQTRIP 897
Query: 815 KVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLA 874
++GDK + RHG KG+ I+ ++DMP+ G DM+ NP G PSRM VG+ E G A
Sbjct: 898 EIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA 957
Query: 875 GDVLDR-HYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTG 933
G + + HY A + E + +EL + Y GK + G TG
Sbjct: 958 GLLEGKFHYGTAFGGSKVED------IQAELERHGFN----------YVGKDFFYSGITG 1001
Query: 934 TPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWAL 993
TP E + G Y KL H V DK+H R+ G A++T+QP +GR+++GG R+GEME L
Sbjct: 1002 TPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCL 1061
Query: 994 EGFGVAHILQEMLTYKSD 1011
+G + ++ E L SD
Sbjct: 1062 ISYGASMLIMERLMISSD 1079
Score = 35.2 bits (79), Expect = 4.3
Identities = 82/403 (20%), Positives = 150/403 (36%), Gaps = 42/403 (10%)
Query: 75 TYSSELYVSAGLIWKNSKNIQEQTIFIGNIPLMNSLGTSIVNGIYRIVINQILQ---SPG 131
TYS+ + V + ++ I+ + IG +PLM + G ++++ + PG
Sbjct: 116 TYSAPITVDIEYT-RGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPG 174
Query: 132 IYYQSELDHKGISV-----YTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSA 186
Y+ K I + + + D+ G ++ ++ +K + +L
Sbjct: 175 GYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTH-----EKKSRTLVLSKHGK 229
Query: 187 MGSNLNEILENVCYPEIF--LSFLNDKE-EKKIGSKESAILEFYRQFACVGGDPVFPESL 243
N + +++ IF L ++D+E + IG + F VF +
Sbjct: 230 YYLKHNSMTDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQR 289
Query: 244 CRE-----LQKKFFQQRCEL--GEIGRRNMNRRLNLDIPQNNTFLLPRDILTA--ADHLI 294
E L K FQ E R + + +P +N L + I + ++
Sbjct: 290 ALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVM 349
Query: 295 GMKFRMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQN 354
+ DD ++ NKR+ LL F R+ N TI K+ +
Sbjct: 350 AAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRM-NWELKTIADKNIPKVKAAQFD 408
Query: 355 LVT---STPLTTTYESFF--GLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTAS-- 407
+V + +T ES G + + +TQ++ +LSY+ G+ R S
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLS--RLSYISALGMMTRVNSQF 466
Query: 408 ------FRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHARI 444
R + S +G +CP DT EG GL+ +LA+ I
Sbjct: 467 EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHI 509
>sp|Q42877|RPB2_LYCES DNA-DIRECTED RNA POLYMERASE II 135 KDA POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2)
pir||S65068 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
tomato
gb|AAC49273.1| (U28403) RNA polymerase II subunit 2 [Lycopersicon esculentum]
Length = 1191
Score = 146 bits (366), Expect = 1e-33
Identities = 101/369 (27%), Positives = 164/369 (44%), Gaps = 35/369 (9%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITN 707
+L G N +VA + GYN ED+V+++ + + S R Y + +
Sbjct: 778 QLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 837
Query: 708 KIPHLEVHLLRN-----LDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI 762
+ +R+ LD +GL G+ V D+++GK TP ++++ + R R
Sbjct: 838 RPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDDAQGQASRYTR-- 894
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAG 822
K+ L G V V G + + + + R ++GDK +
Sbjct: 895 --------KDHSTSLRHSETGMVDQVLLTTNADGLRF----VKVRVRSVRIPQIGDKFSS 942
Query: 823 RHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHY 882
RHG KG V ++DMP+ +G D++ NP +PSRM +GQ+ EC +G + +
Sbjct: 943 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1002
Query: 883 RIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVII 942
PF + S+ L ++ Q G +++G TG + +
Sbjct: 1003 DATPFTDVTVDNISKAL-----HKCGYQMR----------GFETMYNGHTGRRLSAMIFL 1047
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y +L H VDDKIH R G ++T+QP +GR++ GG R GEME + G AH L
Sbjct: 1048 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 1107
Query: 1003 QEMLTYKSD 1011
+E L +SD
Sbjct: 1108 KERLFDQSD 1116
Score = 51.9 bits (122), Expect = 4e-05
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 304 DDMNHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICG------------AIRYKLIPT 351
DD +H NKR+ LL F + +L VRG + AI+ K I +
Sbjct: 387 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITS 446
Query: 352 PQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIR 411
+T + +SQVL+R + + H R+L+ P G G+ A + R
Sbjct: 447 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KPR 502
Query: 412 DIHSSHYGRICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSP 471
+H+S +G +CP +T EG GL+ +LA+ I GS P E E + +SP
Sbjct: 503 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENFEEISP 561
Query: 472 S 472
+
Sbjct: 562 A 562
>prf||0612199A polymerase beta,RNA [Escherichia coli]
Length = 384
Score = 146 bits (365), Expect = 1e-33
Identities = 71/131 (54%), Positives = 95/131 (72%), Gaps = 1/131 (0%)
Query: 923 GKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGG 982
G+ R++DGRTG FE+PV +G Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GG
Sbjct: 74 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 133
Query: 983 QRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLL 1042
QR GEMEVWALE +G A+ LQEMLT KSD + R ++ + G +P PESF +L
Sbjct: 134 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVL 192
Query: 1043 VRELRSLALEL 1053
++E+RSL + +
Sbjct: 193 LKEIRSLGINI 203
>pir||I52541 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain (C-terminal) -
Escherichia coli (fragment)
gb|AAA24581.1| (M38293) RNA polymerase beta subunit (rpoB) (EC 2.7.7.6) [Escherichia
coli]
gb|AAA24583.1| (M38303) RNA polymerase beta subunit (rpoB) (EC 2.7.7.6) [Escherichia
coli]
Length = 200
Score = 146 bits (365), Expect = 1e-33
Identities = 71/131 (54%), Positives = 95/131 (72%), Gaps = 1/131 (0%)
Query: 923 GKSRIFDGRTGTPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGG 982
G+ R++DGRTG FE+PV +G Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GG
Sbjct: 66 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 125
Query: 983 QRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLL 1042
QR GEMEVWALE +G A+ LQEMLT KSD + R ++ + G +P PESF +L
Sbjct: 126 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP-GMPESFNVL 184
Query: 1043 VRELRSLALEL 1053
++E+RSL + +
Sbjct: 185 LKEIRSLGINI 195
>gi|6324725 second largest subunit of RNA polymerase II; Rpb2p [Saccharomyces
cerevisiae]
sp|P08518|RPB2_YEAST DNA-DIRECTED RNA POLYMERASE II 140 KD POLYPEPTIDE (B150) (RNA
POLYMERASE II SUBUNIT 2)
pir||A25884 DNA-directed RNA polymerase (EC 2.7.7.6) II 140K chain [validated] -
yeast (Saccharomyces cerevisiae)
gb|AAC49637.1| (U55020) Rpb2p polymerase [Saccharomyces cerevisiae]
emb|CAA99357.1| (Z75059) ORF YOR151c [Saccharomyces cerevisiae]
Length = 1224
Score = 146 bits (365), Expect = 1e-33
Identities = 105/371 (28%), Positives = 166/371 (44%), Gaps = 37/371 (9%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIR-------KYEIQTHVTSN 700
EL G+N +VA + GYN ED+++++ + ++ S R KY + T
Sbjct: 816 ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFE 875
Query: 701 GPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLR 760
P+R TN + ++ LD +GL+ G V D+++GK TP E
Sbjct: 876 KPQR-TNTL-RMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEE--------- 924
Query: 761 AILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKV 820
LG + + + P+ I + L G + + + + + ++GDK
Sbjct: 925 --LGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGL--KFVKVRVRTTKIPQIGDKF 980
Query: 821 AGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDR 880
A RHG KG + R+DMP+ +G D++ NP +PSRM V + EC L +
Sbjct: 981 ASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGN 1040
Query: 881 HYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPV 940
+PF + E KL+ YQ+ G +++G TG +
Sbjct: 1041 EGDASPFTD-ITVEGISKLLREHGYQSR--------------GFEVMYNGHTGKKLMAQI 1085
Query: 941 IIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAH 1000
G Y +L H VDDKIH R+ G ++T+QP++GR++ GG R GEME + G A
Sbjct: 1086 FFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAS 1145
Query: 1001 ILQEMLTYKSD 1011
L+E L SD
Sbjct: 1146 FLKERLMEASD 1156
Score = 41.4 bits (95), Expect = 0.057
Identities = 23/67 (34%), Positives = 41/67 (60%), Gaps = 4/67 (5%)
Query: 374 LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVG 433
+SQVL+R + + H R+ + P G G+ A + R +H++H+G +CP +T EG G
Sbjct: 479 VSQVLNRYTYSSTLSHLRRTNT--PIGRDGKLA--KPRQLHNTHWGLVCPAETPEGQACG 534
Query: 434 LIGSLAI 440
L+ +L++
Sbjct: 535 LVKNLSL 541
>sp|P22703|RPOB_ANASP DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
pir||A42361 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Anabaena sp.
(strain PCC 7120) (fragment)
gb|AAA22032.1| (M60831) RNA polymerase beta-subunit [Anabaena variabilis]
Length = 165
Score = 146 bits (364), Expect = 2e-33
Identities = 71/118 (60%), Positives = 91/118 (76%), Gaps = 1/118 (0%)
Query: 936 FEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEG 995
F++PV IG Y+LKL+H VDDKIH RS+G Y+LVTQQPL G+A+QGGQR GEMEVWALE
Sbjct: 2 FDRPVTIGVAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEA 61
Query: 996 FGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTISKPVDAPESFRLLVRELRSLALEL 1053
FG A+ LQE+LT KSD ++ R E L + G I +P PESF++L+REL+SL L++
Sbjct: 62 FGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPRP-GTPESFKVLMRELQSLGLDI 118
>sp|P25167|RPC2_DROME DNA-DIRECTED RNA POLYMERASE III 128 KD POLYPEPTIDE (RNA POLYMERASE
III SUBUNIT 2)
pir||RNFF32 DNA-directed RNA polymerase (EC 2.7.7.6) III second-largest chain -
fruit fly (Drosophila melanogaster)
emb|CAA41631.1| (X58826) RNA polymerase III second-largest subunit [Drosophila
melanogaster]
Length = 1135
Score = 145 bits (361), Expect = 4e-33
Identities = 116/377 (30%), Positives = 183/377 (47%), Gaps = 50/377 (13%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLIS----DR-----LVYEDIYTSFHIRKYEIQTHVT 698
+L G+N VA M + GY+ EDA++++ DR LVY++ + +++Y QT
Sbjct: 738 KLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKN--SKCTVKRYANQTFDR 795
Query: 699 SNGP--ERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPED 756
GP + +TNK+ + LD +G+V G V+ I++ K P + +
Sbjct: 796 IMGPMKDALTNKV----IFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNP----- 846
Query: 757 RLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKR-EIK 815
+Q +++ +PI +G + ++ + S E I IL ++ I
Sbjct: 847 --------LQGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEEDFLIKILLRQTRIP 896
Query: 816 VGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 875
GDK + RHG KG+ I+ ++DMP+ G DM+ NP G PSRM VG+ E G AG
Sbjct: 897 RGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAG 956
Query: 876 DVLDR-HYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGT 934
+ + HY A + E + +EL + Y GK + G TGT
Sbjct: 957 LLEGKFHYGTAFGGSKVED------IQAELERHGFN----------YVGKDFFYSGITGT 1000
Query: 935 PFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALE 994
P E + G Y KL H V DK+H R+ G A++T+QP +GR+++GG R+GEME L
Sbjct: 1001 PLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLI 1060
Query: 995 GFGVAHILQEMLTYKSD 1011
+G + ++ E L SD
Sbjct: 1061 SYGASMLIMERLMISSD 1077
>gb|AAF19059.1|AF107787_1 (AF107787) DNA-dependent RNA polymerase II RPB140 [Candida albicans]
Length = 1210
Score = 144 bits (360), Expect = 5e-33
Identities = 106/372 (28%), Positives = 164/372 (43%), Gaps = 39/372 (10%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYE-------IQTHVTSN 700
EL G+N +VA + GYN ED+++++ + ++ S R Y ++ T
Sbjct: 823 ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFE 882
Query: 701 GPERI-TNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLL 759
P R T ++ H LD++GL+ G V DI++GK TP A
Sbjct: 883 KPTRSDTLRLKH---GTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRT--- 936
Query: 760 RAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDK 819
Q T ++ L G V V GS + + + + + ++GDK
Sbjct: 937 ------QYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKF----VKVRMRTTKVPQIGDK 986
Query: 820 VAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLD 879
A RHG KG + +DMP+ +G D++ NP +PSRM V + EC L +
Sbjct: 987 FASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSG 1046
Query: 880 RHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQP 939
+PF + ++ S L+ YQ+ G +++G TG
Sbjct: 1047 FEGDASPFTDVTTEQIST-LLRDHGYQSR--------------GFEVMYNGHTGKKLMAQ 1091
Query: 940 VIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVA 999
V G Y +L H VDDKIH R+ G ++T+QP++GR++ GG R GEME + G A
Sbjct: 1092 VFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAA 1151
Query: 1000 HILQEMLTYKSD 1011
L+E L SD
Sbjct: 1152 GFLKERLMEASD 1163
Score = 41.4 bits (95), Expect = 0.057
Identities = 23/67 (34%), Positives = 41/67 (60%), Gaps = 4/67 (5%)
Query: 374 LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVG 433
+SQVL+R + + H R+ + P G G+ A + R +H++H+G +CP +T EG G
Sbjct: 474 VSQVLNRYTYSSTLSHLRRTNT--PIGRDGKIA--KPRQLHNTHWGLVCPAETPEGQACG 529
Query: 434 LIGSLAI 440
L+ +L++
Sbjct: 530 LVKNLSL 536
>pir||T49421 probable DNA-directed RNA polymerase III second-largest chain
[imported] - Neurospora crassa
emb|CAB91222.1| (AL355926) probable DNA-directed RNA polymerase III second-largest
chain [Neurospora crassa]
Length = 1155
Score = 144 bits (359), Expect = 6e-33
Identities = 167/673 (24%), Positives = 272/673 (39%), Gaps = 92/673 (13%)
Query: 392 KLSYLGPGGLTGRTAS--------FRIRDIHSSHYGRICPIDTSEGINVGLIGSLAIHAR 443
+LSY+ G+ R +S R + S +G +C DT EG GL+ +LA+
Sbjct: 459 RLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTH 518
Query: 444 IGR---WGSIESPFFEISERSKRIHMLYLSP--SRDEYYMIATGNYLALNQGNQEEQIVP 498
I ++ F E I + S+ Y + G A+ + P
Sbjct: 519 ITTNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYIIHLNGTPFAVTRE-------P 571
Query: 499 ARYRQEFLTIA-------WEQVHLRSIFSFQYFSIGASLI--PFIEHNDANRALMSSNMQ 549
R+ F T+ + +H+ FS + + I P+I + L + +++
Sbjct: 572 KRFAARFRTLRRRGWVSPFVSIHINEHFSAVHIATDEGRICRPYIIVKNGKSMLKAEHLK 631
Query: 550 RQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEGKIIYKDTNKIV----LFGSGETLS 605
+ + + + +E + +A E +I T+ + + G+ L
Sbjct: 632 MLQLGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQITNSTTHMEIEPFTILGAVAGL- 690
Query: 606 VPLVIYRRSNKNT--CMHQK--------SQVQRGKCI-------KRGQILADGAATVG-G 647
+P + +S +NT C K +Q R + +R ++ +
Sbjct: 691 IPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYD 750
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITN 707
+L G+N V M + GY+ EDA++++ + RKY + +NG
Sbjct: 751 KLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQGYTNGRRDRVG 810
Query: 708 KIPHLE------VHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRA 761
I E H + LD +GL +GS VE+G ++ K TP D++
Sbjct: 811 GIMKDEDDKPIVKHAI--LDADGLAQVGSKVESGQTMIKKETPL----------DQISTG 858
Query: 762 ILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPET--IHIYILQKREIKVGDK 819
I G + S R+ D + K S E I + Q R ++GDK
Sbjct: 859 IAGDRGSDDYRDA-----STNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDK 913
Query: 820 VAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVL- 878
+ RHG KG+V I+ +DMP+ G D++ NP G PSRM VG++FEC G A +
Sbjct: 914 FSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVIAG 973
Query: 879 DRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQ 938
++ Y +A R + QA W GK G TG P E
Sbjct: 974 EKDYGFG--------DAFRSHPVESMGQALIDHGFSW------EGKDYFTSGITGEPMEA 1019
Query: 939 PVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGV 998
+ G + +L H V DK+H RS G A++T+QP +GR++ GG R+GEME L +G
Sbjct: 1020 YIYNGPIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGA 1079
Query: 999 AHILQEMLTYKSD 1011
+ +L E L SD
Sbjct: 1080 SQLLLERLMISSD 1092
>gb|AAF24995.1|AF129448_1 (AF129448) RpoB [Klebsiella terrigena]
Length = 170
Score = 143 bits (357), Expect = 1e-32
Identities = 69/167 (41%), Positives = 107/167 (63%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ ++++ + YLS + Y+IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
++G+ EE +V R + E + +QV + + Q S+GASLIP
Sbjct: 124 LDDEGHFEEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 170
>gb|AAA68096.1| (M15693) RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
Length = 1224
Score = 143 bits (356), Expect = 1e-32
Identities = 104/371 (28%), Positives = 165/371 (44%), Gaps = 37/371 (9%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIR-------KYEIQTHVTSN 700
EL G+N +VA + GYN ED+++++ + ++ S R KY + T
Sbjct: 816 ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFE 875
Query: 701 GPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLR 760
P+R TN + ++ LD +GL+ G V D+++GK TP E
Sbjct: 876 KPQR-TNTL-RMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEE--------- 924
Query: 761 AILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKV 820
LG + + + P+ I + L G + + + + + ++GDK
Sbjct: 925 --LGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGL--KFVKVRVRTTKIPQIGDKF 980
Query: 821 AGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDR 880
A RHG KG + R+DMP+ + D++ NP +PSRM V + EC L +
Sbjct: 981 ASRHGQKGTIGITYRREDMPFTRRRYVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGN 1040
Query: 881 HYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPV 940
+PF + E KL+ YQ+ G +++G TG +
Sbjct: 1041 EGDASPFTD-ITVEGISKLLREHGYQSR--------------GFEVMYNGHTGKKLMAQI 1085
Query: 941 IIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAH 1000
G Y +L H VDDKIH R+ G ++T+QP++GR++ GG R GEME + G A
Sbjct: 1086 FFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAS 1145
Query: 1001 ILQEMLTYKSD 1011
L+E L SD
Sbjct: 1146 FLKERLMEASD 1156
Score = 41.4 bits (95), Expect = 0.057
Identities = 23/67 (34%), Positives = 41/67 (60%), Gaps = 4/67 (5%)
Query: 374 LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVG 433
+SQVL+R + + H R+ + P G G+ A + R +H++H+G +CP +T EG G
Sbjct: 479 VSQVLNRYTYSSTLSHLRRTNT--PIGRDGKLA--KPRQLHNTHWGLVCPAETPEGQACG 534
Query: 434 LIGSLAI 440
L+ +L++
Sbjct: 535 LVKNLSL 541
>gb|AAD48049.1| (AF170689) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAD48051.1| (AF170691) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAD48052.1| (AF170692) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAD48054.1| (AF170694) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAD48055.1| (AF170695) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAG47863.1| (AY016744) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAG47865.1| (AY016746) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAG47866.1| (AY016747) RNA polymerase beta subunit [Klebsiella pneumoniae]
Length = 166
Score = 142 bits (354), Expect = 2e-32
Identities = 72/166 (43%), Positives = 109/166 (65%)
Query: 420 RICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMI 479
R+CPI+T EG N+GLI SL+++A+ +G +E+P+ ++++ + YLS + Y+I
Sbjct: 1 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI 60
Query: 480 ATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDA 539
A N G+ E +V R + E + +QV + + Q S+GASLIPF+EH+DA
Sbjct: 61 AQANSNLDENGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 120
Query: 540 NRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEG 585
NRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A+A+ G
Sbjct: 121 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 166
>gb|AAD09615.1| (U77445) RNA polymerase beta-subunit [Proteus mirabilis]
Length = 170
Score = 142 bits (354), Expect = 2e-32
Identities = 67/167 (40%), Positives = 106/167 (63%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ + + + YLS + ++IA N +
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRVVENNAVTDEIHYLSAIEEGNFIIAQANSV 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
+ G+ E++V R++ E + +QV + + Q S+GASLIP
Sbjct: 124 LDDDGHFVEELVTCRHKGESSLFSRDQVQYMDVSTQQVVSVGASLIP 170
>gb|AAD48050.1| (AF170690) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAD48053.1| (AF170693) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAG47864.1| (AY016745) RNA polymerase beta subunit [Klebsiella pneumoniae]
gb|AAG47867.1| (AY016748) RNA polymerase beta subunit [Klebsiella pneumoniae]
Length = 166
Score = 141 bits (352), Expect = 4e-32
Identities = 72/166 (43%), Positives = 108/166 (64%)
Query: 420 RICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMI 479
R+CPI+T EG N+GLI SL+++A+ +G +E+P+ +++ + YLS + Y+I
Sbjct: 1 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTNGVVTDEIHYLSAIEEGNYVI 60
Query: 480 ATGNYLALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIPFIEHNDA 539
A N G+ E +V R + E + +QV + + Q S+GASLIPF+EH+DA
Sbjct: 61 AQANSNLDENGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 120
Query: 540 NRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGTLAIAEHEG 585
NRALM +NMQRQAVP +++K +VGTG+ER VA+DSG A+A+ G
Sbjct: 121 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 166
>gb|AAD09603.1| (U77434) RNA polymerase beta-subunit [Citrobacter freundii]
gb|AAD09604.1| (U77435) RNA polymerase beta-subunit [Enterobacter cloacae]
gb|AAD09609.1| (U77439) RNA polymerase beta-subunit [Kluyvera ascorbata]
gb|AAD09610.1| (U77440) RNA polymerase beta-subunit [Klebsiella ornithinolytica]
gb|AAD09611.1| (U77441) RNA polymerase beta-subunit [Klebsiella oxytoca]
gb|AAD09612.1| (U77442) RNA polymerase beta-subunit [Klebsiella oxytoca]
gb|AAF24996.1|AF129449_1 (AF129449) RpoB [Klebsiella planticola]
gb|AAF24997.1|AF129450_1 (AF129450) RpoB [Klebsiella trevisanii]
Length = 170
Score = 140 bits (350), Expect = 7e-32
Identities = 68/167 (40%), Positives = 106/167 (62%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ ++++ + YLS + Y+IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
++G+ E +V R + E + +QV + + Q S+GASLIP
Sbjct: 124 LDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 170
>gb|AAF19069.1|AF107797_1 (AF107797) DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
Length = 1029
Score = 140 bits (349), Expect = 9e-32
Identities = 103/369 (27%), Positives = 166/369 (44%), Gaps = 33/369 (8%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEIQTHVTSNGPERITN 707
EL G+N +VA + GYN ED+V+++ + ++ S R Y+ +
Sbjct: 623 ELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDSEKSVGHSVVEQFE 682
Query: 708 KIPHLEVHLLRN-----LDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI 762
K + L++ +D++G+V G V DI++GK P AP+ L
Sbjct: 683 KPTRSDTLRLKHGTYDKIDEDGIVAPGVRVSGEDIIMGKTAPM-------APDAEELGQR 735
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAG 822
L + T L+ G ++D L G+ + + + +I GDK A
Sbjct: 736 LKQHIKRDVSTPLRSTESG---IVDQVMLTTTA-EGHRFAKVRVRTTKVPQI--GDKFAS 789
Query: 823 RHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHY 882
RHG KG + +DMP+ ++G D++ NP +PSRM + + EC L +
Sbjct: 790 RHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVATLRGDEG 849
Query: 883 RIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVII 942
PF + + S +L+ + YQ+ G +++G TG V +
Sbjct: 850 DATPFTKVTVTQVS-ELLRTMGYQSR--------------GFEVMYNGHTGRKMVAQVFL 894
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y +L H VDDKIH R+ G ++T+QP++GRA+ GG R GEME + G + L
Sbjct: 895 GPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFL 954
Query: 1003 QEMLTYKSD 1011
+E L SD
Sbjct: 955 KERLFDVSD 963
Score = 41.8 bits (96), Expect = 0.044
Identities = 23/71 (32%), Positives = 42/71 (58%), Gaps = 4/71 (5%)
Query: 374 LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVG 433
+SQVL R + + H R+ + P G G+ A + R +H++H+G +CP +T EG G
Sbjct: 277 VSQVLSRYTFSSTLSHLRRTN--APIGREGKIA--KPRQLHNTHWGYVCPAETPEGQACG 332
Query: 434 LIGSLAIHARI 444
L+ +L++ + +
Sbjct: 333 LVKNLSLMSMV 343
>gb|AAD09616.1| (U77446) RNA polymerase beta-subunit [Providencia stuartii]
Length = 170
Score = 140 bits (349), Expect = 9e-32
Identities = 67/167 (40%), Positives = 104/167 (62%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ + + + YLS + ++IA N +
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRLVRDGIVTDEIHYLSAIEEGNFIIAQANTV 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
G+ E+++ R R E + +QV + + Q S+GASLIP
Sbjct: 124 LAEDGSFVEELITCRNRGESSLFSRDQVEYMDVSTQQVVSVGASLIP 170
>gb|AAD09605.1| (U77436) RNA polymerase beta-subunit [Escherichia coli]
gb|AAD09617.1| (U77448) RNA polymerase beta-subunit [Shigella dysenteriae]
Length = 170
Score = 140 bits (349), Expect = 9e-32
Identities = 68/167 (40%), Positives = 105/167 (62%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ ++++ + YLS + Y+IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
+G+ E +V R + E + +QV + + Q S+GASLIP
Sbjct: 124 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 170
>sp|O54888|RPA2_RAT DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (RNA POLYMERASE I
SUBUNIT 2) (RPA135) (RNA POLYMERASE I 127 KD SUBUNIT)
pir||T42368 DNA-directed RNA polymerase (EC 2.7.7.6) I second largest chain - rat
gb|AAB94600.1| (AF025424) RNA polymerase I 127 kDa subunit [Rattus norvegicus]
Length = 1135
Score = 139 bits (348), Expect = 1e-31
Identities = 106/384 (27%), Positives = 176/384 (45%), Gaps = 38/384 (9%)
Query: 651 LGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEI--QTHVTSNGPERITNK 708
+G N +VA + + GY+ EDA++++ + +E + + K E + G + +
Sbjct: 737 IGTNAIVAVISYTGYDMEDAMIVN-KASWERGFAHGSVYKSEFIDLSEKFKQGDDSLVFG 795
Query: 709 IPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVS 768
+ + +++ LD +GL +G+ +E GD G L + +
Sbjct: 796 VKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGF--------------VVYY 841
Query: 769 TSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKG 828
SKE C+ V +++ GSG + + + + R +GDK A RHG KG
Sbjct: 842 KSKENCV---------VDNIKVCSNDTGSG-KFKCVCVTVRVPRNPTIGDKFASRHGQKG 891
Query: 829 IVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFD 888
I+S++ +DMP+ + G D++FNP G PSRM +G + E G + + + PF
Sbjct: 892 ILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF- 950
Query: 889 ERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYIL 948
+ +E S F E+ +A+ + G R++ G +G E + IG Y
Sbjct: 951 -IFSEENSALEYFGEMLKAAGY---------NFYGTERLYSGISGMELEADIFIGVVYYQ 1000
Query: 949 KLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTY 1008
+L H V DK R++G VT QP+ GR QGG R GEME AL G + +L + L
Sbjct: 1001 RLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1060
Query: 1009 KSDHIKARQEVLGTTIIGGTISKP 1032
SD A V +++ + KP
Sbjct: 1061 CSDRSVAHVCVKCGSLLSPLLEKP 1084
>gb|AAD09614.1| (U77444) RNA polymerase beta-subunit [Klebsiella pneumoniae]
gb|AAF24992.1|AF129445_1 (AF129445) RpoB [Klebsiella pneumoniae subsp. ozaenae]
gb|AAG36784.1| (AF218573) RNA polymerase beta-subunit [Calymmatobacterium
granulomatis]
Length = 170
Score = 139 bits (347), Expect = 2e-31
Identities = 68/167 (40%), Positives = 104/167 (61%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ ++++ + YLS + Y+IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
G+ E +V R + E + +QV + + Q S+GASLIP
Sbjct: 124 LDENGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 170
>gb|AAC94960.1| (AF008577) RNA polymerase beta-subunit [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 170
Score = 139 bits (347), Expect = 2e-31
Identities = 68/167 (40%), Positives = 104/167 (61%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ + + + YLS + Y+IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIEEGNYVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
++G+ E +V R + E + +QV + + Q S+GASLIP
Sbjct: 124 LDDEGHFVEDVVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 170
>dbj|BAB14082.1| (AK022533) unnamed protein product [Homo sapiens]
Length = 1079
Score = 139 bits (346), Expect = 2e-31
Identities = 107/384 (27%), Positives = 174/384 (44%), Gaps = 38/384 (9%)
Query: 651 LGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKYEI--QTHVTSNGPERITNK 708
+G N +VA + + GY+ EDA++++ + +E + + K E + G +
Sbjct: 681 IGTNAIVAVISYTGYDMEDAMIVN-KASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFG 739
Query: 709 IPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVS 768
I + +L+ LD +GL +G+ ++ GD L + +
Sbjct: 740 IKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESF--------------VMYY 785
Query: 769 TSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKG 828
SKE C+ V +++ GSG + + I + R +GDK A RHG KG
Sbjct: 786 KSKENCV---------VDNIKVCSNDTGSG-KFKCVRITMRVPRNPTIGDKFASRHGRKG 835
Query: 829 IVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFD 888
I+S++ +DMP+ + G D++FNP G PSRM +G + E G + + + PF
Sbjct: 836 ILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPF- 894
Query: 889 ERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVIIGNPYIL 948
+ +E S F E+ +A+ + G R++ G +G E + IG Y
Sbjct: 895 -IFSEENSALEYFGEMLKAAGY---------NFYGTERLYSGISGLELEADIFIGVVYYQ 944
Query: 949 KLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTY 1008
+L H V DK R++G VT QP+ GR QGG R GEME AL G + +L + L
Sbjct: 945 RLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1004
Query: 1009 KSDHIKARQEVLGTTIIGGTISKP 1032
SD A V +++ + KP
Sbjct: 1005 CSDRSVAHVCVKCGSLLSPLLEKP 1028
>gb|AAD09618.1| (U77451) RNA polymerase beta-subunit [Salmonella enterica subsp.
enterica serovar Shomron]
gb|AAD09619.1| (U77452) RNA polymerase beta-subunit [Salmonella enterica subsp.
enterica serovar Sofia]
gb|AAD10529.1| (U77447) RNA polymerase beta-subunit [Salmonella choleraesuis
subsp. arizonae]
gb|AAD09620.1| (U77450) RNA polymerase beta-subunit [Salmonella paratyphi]
Length = 170
Score = 139 bits (346), Expect = 2e-31
Identities = 68/167 (40%), Positives = 104/167 (61%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ + + + YLS + Y+IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIEEGNYVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
++G+ E +V R + E + +QV + + Q S+GASLIP
Sbjct: 124 LDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 170
>gb|AAD09607.1| (U77438) RNA polymerase beta-subunit [Hafnia alvei]
Length = 170
Score = 139 bits (346), Expect = 2e-31
Identities = 68/167 (40%), Positives = 103/167 (60%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ + + + YLS + Y+IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGIVTDEIHYLSAIEEGNYVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
++G E +V R + E + +QV + + Q S+GASLIP
Sbjct: 124 LDDEGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 170
>gb|AAD09606.1| (U77437) RNA polymerase beta-subunit [Escherichia fergusonii]
Length = 170
Score = 139 bits (346), Expect = 2e-31
Identities = 68/167 (40%), Positives = 104/167 (61%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ ++ + + YLS + Y+IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVIDGVVTDEIHYLSAIEEGNYVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
+G+ E +V R + E + +QV + + Q S+GASLIP
Sbjct: 124 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 170
>gb|AAD09613.1| (U77443) RNA polymerase beta-subunit [Klebsiella pneumoniae]
gb|AAF24993.1|AF129446_1 (AF129446) RpoB [Klebsiella pneumoniae subsp. rhinoscleromatis]
Length = 170
Score = 138 bits (345), Expect = 3e-31
Identities = 68/167 (40%), Positives = 103/167 (60%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ +++ + YLS + Y+IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTNGVVTDEIHYLSAIEEGNYVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
G+ E +V R + E + +QV + + Q S+GASLIP
Sbjct: 124 LDENGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 170
>gb|AAF19065.1|AF107793_1 (AF107793) DNA-dependent RNA polymerase II RPB140 [Aspergillus
nidulans]
Length = 1009
Score = 138 bits (344), Expect = 4e-31
Identities = 106/372 (28%), Positives = 167/372 (44%), Gaps = 39/372 (10%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY-EIQTHVTSNGPERIT 706
EL G+N +VA + GYN ED+V+++ + ++ S R Y + + V ER
Sbjct: 622 ELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFE 681
Query: 707 NKIPHLEVHLLRN----LDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI 762
+ + + + LD++G+V G V DI++GK P AP+ L
Sbjct: 682 KPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGKTAP-------LAPDAEELGQR 734
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKV---GDK 819
T L+ G ++D + P+++ ++ R KV GDK
Sbjct: 735 TKNHTKLDVSTPLRSTENG---IVDQVLVTT------TPDSLRSVKVRMRMTKVPQIGDK 785
Query: 820 VAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLD 879
A RHG KG + ++DMP+ ++G D++ NP +PSRM + + EC L +
Sbjct: 786 FASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSALRG 845
Query: 880 RHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQP 939
PF + SR L+ YQ+ G +++G TG
Sbjct: 846 FEGDATPFTDVTVDSISR-LLREHGYQSR--------------GFEVMYNGHTGRKLVAQ 890
Query: 940 VIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVA 999
V +G Y +L H VDDKIH R+ G ++T+QP++GRA+ GG R GEME + G +
Sbjct: 891 VFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGAS 950
Query: 1000 HILQEMLTYKSD 1011
L+E L SD
Sbjct: 951 AFLKERLFDVSD 962
Score = 42.6 bits (98), Expect = 0.026
Identities = 24/67 (35%), Positives = 40/67 (58%), Gaps = 4/67 (5%)
Query: 374 LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVG 433
+SQVL R + + H R+ + P G G+ A + R +H++H+G +CP +T EG G
Sbjct: 277 VSQVLSRYTYASTLSHLRRTNT--PIGRDGKIA--KPRQLHNTHWGLVCPAETPEGQACG 332
Query: 434 LIGSLAI 440
L+ +LA+
Sbjct: 333 LVKNLAL 339
>gb|AAC94961.1| (AF008578) RNA polymerase beta-subunit [Yersinia pestis]
Length = 170
Score = 138 bits (344), Expect = 4e-31
Identities = 68/167 (40%), Positives = 103/167 (60%)
Query: 366 ESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPID 425
+ FFG LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+H +HYGR+CPI+
Sbjct: 4 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 63
Query: 426 TSEGINVGLIGSLAIHARIGRWGSIESPFFEISERSKRIHMLYLSPSRDEYYMIATGNYL 485
T EG N+GLI SL+++A+ +G +E+P+ + + + YLS + ++IA N
Sbjct: 64 TPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVTDEINYLSAIEEGNFVIAQANSN 123
Query: 486 ALNQGNQEEQIVPARYRQEFLTIAWEQVHLRSIFSFQYFSIGASLIP 532
++G E +V R + E + EQV + + Q S+GASLIP
Sbjct: 124 LDDEGRFLEDLVTCRSKGESSLFSREQVDYMDVSTQQIVSVGASLIP 170
>pir||T50175 dna-directed rna polymerase ii 138 kd polypeptide [imported] -
fission yeast (Schizosaccharomyces pombe) (fragment)
emb|CAB72226.1| (AL138854) dna-directed rna polymerase ii 138 kd polypeptide
[Schizosaccharomyces pombe]
Length = 518
Score = 138 bits (343), Expect = 5e-31
Identities = 100/369 (27%), Positives = 160/369 (43%), Gaps = 33/369 (8%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY-----EIQTHVTSNGP 702
EL G+N +VA + + GYN ED+++++ + ++ S R Y +I V
Sbjct: 113 ELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFE 172
Query: 703 ERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI 762
+ + ++ L+ +GL+ G+ V DI++GK P
Sbjct: 173 RPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRT------ 226
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAG 822
Q+ ++ L G V V + G + + + + R ++GDK A
Sbjct: 227 ---QLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKF----VKVRMRSTRIPQIGDKFAS 279
Query: 823 RHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHY 882
RHG KG + +DMP+ G D++ NP +PSRM V + EC L +
Sbjct: 280 RHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEG 339
Query: 883 RIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVII 942
PF + EA KL+ S +Q+ G ++ G TG V +
Sbjct: 340 DATPFTD-VTVEAVSKLLRSHGFQSR--------------GFEVMYHGHTGRKLVAQVFL 384
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y +L H VDDKIH R+ G ++T+QP++GR++ GG R GEME G + +L
Sbjct: 385 GPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVL 444
Query: 1003 QEMLTYKSD 1011
+E L SD
Sbjct: 445 RERLFDCSD 453
>sp|Q02061|RPB2_SCHPO DNA-DIRECTED RNA POLYMERASE II 138 KD POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2)
pir||S35548 DNA-directed RNA polymerase (EC 2.7.7.6) II chain 2 - fission yeast
(Schizosaccharomyces pombe)
dbj|BAA02600.1| (D13337) RNA polymerase II second largest subunit
[Schizosaccharomyces pombe]
Length = 1210
Score = 138 bits (343), Expect = 5e-31
Identities = 100/369 (27%), Positives = 160/369 (43%), Gaps = 33/369 (8%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTSFHIRKY-----EIQTHVTSNGP 702
EL G+N +VA + + GYN ED+++++ + ++ S R Y +I V
Sbjct: 805 ELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFE 864
Query: 703 ERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAI 762
+ + ++ L+ +GL+ G+ V DI++GK P
Sbjct: 865 RPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRT------ 918
Query: 763 LGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAG 822
Q+ ++ L G V V + G + + + + R ++GDK A
Sbjct: 919 ---QLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKF----VKVRMRSTRIPQIGDKFAS 971
Query: 823 RHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHY 882
RHG KG + +DMP+ G D++ NP +PSRM V + EC L +
Sbjct: 972 RHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEG 1031
Query: 883 RIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPVII 942
PF + EA KL+ S +Q+ G ++ G TG V +
Sbjct: 1032 DATPFTD-VTVEAVSKLLRSHGFQSR--------------GFEVMYHGHTGRKLVAQVFL 1076
Query: 943 GNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHIL 1002
G Y +L H VDDKIH R+ G ++T+QP++GR++ GG R GEME G + +L
Sbjct: 1077 GPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVL 1136
Query: 1003 QEMLTYKSD 1011
+E L SD
Sbjct: 1137 RERLFDCSD 1145
Score = 44.9 bits (104), Expect = 0.005
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 374 LSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGINVG 433
+SQVL+R + + H R+ + P G G+ A + R +H++H+G +CP +T EG G
Sbjct: 465 VSQVLNRYTFASTLSHLRRTNT--PIGRDGKLA--KPRQLHNTHWGMVCPAETPEGQACG 520
Query: 434 LIGSLAIHARIGRWGSIESPFFEISE 459
L+ +L++ + + GS +P E E
Sbjct: 521 LVKNLSLMSYVS-VGSPSAPIIEFLE 545
>gb|AAB59068.1| (L05910) RNA polymerase beta subunit [Mycobacterium tuberculosis]
Length = 144
Score = 138 bits (343), Expect = 5e-31
Identities = 64/144 (44%), Positives = 97/144 (66%), Gaps = 2/144 (1%)
Query: 311 NKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRYKLIPTPQNLVTSTPLTTTYESFFG 370
N+R+R+V +L+Q+Q + + R+E +VR + + TPQ L+ P+ + FFG
Sbjct: 2 NRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAI--TPQTLINIRPVVAAIKEFFG 59
Query: 371 LHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHSSHYGRICPIDTSEGI 430
LSQ +D+ NPL+ + H R+LS LGPGGL+ A +RD+H SHYGR+CPI+T EG
Sbjct: 60 TSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGP 119
Query: 431 NVGLIGSLAIHARIGRWGSIESPF 454
N+GLIGSL+++AR+ +G IE+P+
Sbjct: 120 NIGLIGSLSVYARVNPFGFIETPY 143
>sp|Q10233|RPC2_SCHPO PUTATIVE DNA-DIRECTED RNA POLYMERASE III 130 KD POLYPEPTIDE (RNA
POLYMERASE III SUBUNIT 2)
pir||T38867 probable DNA-directed RNA polymerase III 130 kd subunit - fission
yeast (Schizosaccharomyces pombe)
emb|CAA93558.1| (Z69727) putative dna-directed rna polymerase iii 130 kd polypeptide
(ec 2.7.7.6) [Schizosaccharomyces pombe]
Length = 1165
Score = 137 bits (342), Expect = 6e-31
Identities = 112/371 (30%), Positives = 169/371 (45%), Gaps = 34/371 (9%)
Query: 648 ELSLGKNVLVAYMPWEGYNSEDAVLISDRLVYEDIYTS--FH-----IRKYEIQTHVTSN 700
+L G+N VA M + GY+ EDA++++ + FH +RKY TH
Sbjct: 761 KLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIG 820
Query: 701 GPERITNKIPHLEVHLLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLR 760
P+R + H + ++ +GL +G V+ G I V K TP A ++S L
Sbjct: 821 DPQRDPETGEVVWKHGV--VEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSIT-----LG 873
Query: 761 AILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKV 820
++ S K T + G + V + I + + Q R ++GDK
Sbjct: 874 HTQTVE-SGYKATPMTYKAPEPGYIDKVMLTTTDS----DQTLIKVLMRQTRRPELGDKF 928
Query: 821 AGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDR 880
+ RHG KG+ I+ ++DMP+ G D++ NP G PSRM VG++ E G G +
Sbjct: 929 SSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGT 988
Query: 881 HYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPFEQPV 940
F ++ASR LV Y GK + G TG E +
Sbjct: 989 LEYGTCFGGTKVEDASRILVEHGY---------------NYSGKDMLTSGITGETLEAYI 1033
Query: 941 IIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAH 1000
+G Y KL H V DK+H R+ G A++T+QP +GR++ GG R+GEME L +G +
Sbjct: 1034 FMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQ 1093
Query: 1001 ILQEMLTYKSD 1011
+L E L SD
Sbjct: 1094 LLLERLMISSD 1104
Database: nr
Posted date: Mar 14, 2001 1:25 PM
Number of letters in database: 201,912,487
Number of sequences in database: 640,428
Lambda K H
0.320 0.139 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430894424
Number of Sequences: 640428
Number of extensions: 19011296
Number of successful extensions: 37800
Number of sequences better than 10.0: 497
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 35577
Number of HSP's gapped (non-prelim): 1038
length of query: 1070
length of database: 201,912,487
effective HSP length: 56
effective length of query: 1014
effective length of database: 166,048,519
effective search space: 168373198266
effective search space used: 168373198266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 76 (34.0 bits)
Lotus japonicus(Cp)