Lotus japonicus

BLAST2 result


BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33193.1	29 aa
         (29 letters)

Database: nr
           640,428 sequences; 201,912,487 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|7525026 ycf6 [Arabidopsis thaliana] >gi|11465947|ref|NP_05448...    61  3e-09
ref|NP_043014.1| ORF29 [Zea mays] >gi|1363548|pir||S58541 hypoth...    59  7e-09
sp|P12177|YCF6_MARPO HYPOTHETICAL 3.2 KD PROTEIN (ORF 29) >gi|81...    58  2e-08
gi|7524617 ORF29 [Pinus thunbergii] >gi|1175649|sp|P41611|YCF6_P...    57  4e-08
gi|11467703 hypothetical chloroplast RF6 [Guillardia theta] >gi|...    53  6e-07
gi|11467359 ycf6 [Cyanophora paradoxa] >gi|1351784|sp|P48258|YCF...    51  2e-06
gi|11467793 hypothetical chloroplast RF6 [Nephroselmis olivacea]...    50  3e-06
gi|11465742 hypothetical chloroplast ORF 6. [Porphyra purpurea] ...    50  5e-06
emb|CAA10628.1| (AJ132265) Ycf6 protein [Skeletonema costatum]         49  6e-06
gi|11467521 ORF29 [Odontella sinensis] >gi|1351785|sp|P49527|YCF...    48  1e-05
gi|11466383 hypothetical chloroplast RF6 [Mesostigma viride] >gi...    48  2e-05
gb|AAD55570.1|AF110788_1 (AF110788) unknown [Volvox carteri f. n...    45  9e-05
pir||S74572 hypothetical protein sml0004 - Synechocystis sp. (st...    44  2e-04
emb|CAB72247.2| (AJ271821) PetN protein [Anabaena variabilis]          44  3e-04
gi|11465406 unknown [Cyanidium caldarium] >gi|6466309|gb|AAF1289...    40  0.004

>gi|7525026 ycf6 [Arabidopsis thaliana]
 ref|NP_054489.1| Ycf6 protein [Nicotiana tabacum]
 ref|NP_039372.1| ORF29 [Oryza sativa]
 ref|NP_054925.1| ycf6 protein [Spinacia oleracea]
 sp|P12178|YCF6_ORYSA HYPOTHETICAL 3.2 KDA PROTEIN (ORF 29)
 pir||JQ0212 hypothetical 3K protein (trnI-trnC intergenic region) - rice
          chloroplast
 emb|CAA33985.1| (X15901) ORF29 [Oryza sativa]
 emb|CAA77412.1| (Z00044) Ycf6 protein [Nicotiana tabacum]
 dbj|BAA78039.1| (AB027572) ORF29 [Triticum aestivum]
 dbj|BAA84378.1| (AP000423) ycf6 [Arabidopsis thaliana]
 emb|CAB67149.1| (AJ271079) cytochrome b6f complex subunit VIII [Oenothera elata
          subsp. hookeri]
 emb|CAB88718.1| (AJ400848) ycf6 protein [Spinacia oleracea]
 prf||1603356N ORF 29 [Oryza sativa]
          Length = 29

 Score = 60.5 bits (144), Expect = 3e-09
 Identities = 29/29 (100%), Positives = 29/29 (100%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
          MDIVSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29


>ref|NP_043014.1| ORF29 [Zea mays]
 pir||S58541 hypothetical protein 29 - maize chloroplast
 emb|CAA60275.1| (X86563) ORF29 [Zea mays]
          Length = 29

 Score = 58.9 bits (140), Expect = 7e-09
 Identities = 28/29 (96%), Positives = 28/29 (96%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
          MDIVSL WAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MDIVSLTWAALMVVFTFSLSLVVWGRSGL 29


>sp|P12177|YCF6_MARPO HYPOTHETICAL 3.2 KD PROTEIN (ORF 29)
 pir||S01572 hypothetical protein 29 - liverwort (Marchantia polymorpha)
          chloroplast
          Length = 29

 Score = 57.8 bits (137), Expect = 2e-08
 Identities = 25/29 (86%), Positives = 29/29 (99%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
          MDI+++AWAALMV+FTFSLSLVVWGRSGL
Sbjct: 1  MDIINIAWAALMVIFTFSLSLVVWGRSGL 29


>gi|7524617 ORF29 [Pinus thunbergii]
 sp|P41611|YCF6_PINTH HYPOTHETICAL 3.2 KD PROTEIN (ORF 29)
 pir||T07450 hypothetical protein 29 - Japanese black pine chloroplast
 dbj|BAA04328.1| (D17510) ORF29 [Pinus thunbergii]
          Length = 29

 Score = 56.6 bits (134), Expect = 4e-08
 Identities = 26/29 (89%), Positives = 27/29 (92%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
          MDIV + WAALMVVFTFSLSLVVWGRSGL
Sbjct: 1  MDIVGITWAALMVVFTFSLSLVVWGRSGL 29


>gi|11467703 hypothetical chloroplast RF6 [Guillardia theta]
 sp|O78498|YCF6_GUITH HYPOTHETICAL 3.2 KD PROTEIN YCF6
 gb|AAC35689.1| (AF041468) hypothetical chloroplast RF6 [Guillardia theta]
          Length = 29

 Score = 52.7 bits (124), Expect = 6e-07
 Identities = 23/28 (82%), Positives = 27/28 (96%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
          MDI+SL W+ALMVVFTFSL+LVVWGR+G
Sbjct: 1  MDILSLGWSALMVVFTFSLALVVWGRNG 28


>gi|11467359 ycf6 [Cyanophora paradoxa]
 sp|P48258|YCF6_CYAPA HYPOTHETICAL 3.2 KD PROTEIN YCF6
 pir||T06904 hypothetical protein 6 - Cyanophora paradoxa cyanelle
 gb|AAA81247.1| (U30821) ycf6 gene product [Cyanophora paradoxa]
          Length = 29

 Score = 51.2 bits (120), Expect = 2e-06
 Identities = 23/28 (82%), Positives = 25/28 (89%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
          MDI+SL WAALM  FTFSLSLVVWGR+G
Sbjct: 1  MDILSLGWAALMASFTFSLSLVVWGRNG 28


>gi|11467793 hypothetical chloroplast RF6 [Nephroselmis olivacea]
 gb|AAD54815.1|AF137379_38 (AF137379) hypothetical chloroplast RF6 [Nephroselmis olivacea]
          Length = 30

 Score = 50.4 bits (118), Expect = 3e-06
 Identities = 24/28 (85%), Positives = 24/28 (85%)

Query: 2  DIVSLAWAALMVVFTFSLSLVVWGRSGL 29
          DIVS  WA LMV FTFSLSLVVWGRSGL
Sbjct: 3  DIVSAGWAFLMVSFTFSLSLVVWGRSGL 30


>gi|11465742 hypothetical chloroplast ORF 6. [Porphyra purpurea]
 sp|P51276|YCF6_PORPU HYPOTHETICAL 3.2 KD PROTEIN YCF6 (ORF29)
 pir||S73197 hypothetical protein 6 - red alga (Porphyra purpurea) chloroplast
 gb|AAC08162.1| (U38804) hypothetical chloroplast ORF 6. [Porphyra purpurea]
          Length = 29

 Score = 49.6 bits (116), Expect = 5e-06
 Identities = 20/28 (71%), Positives = 26/28 (92%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
          MDI+SL WAALM +FTFS+++VVWGR+G
Sbjct: 1  MDILSLGWAALMAMFTFSIAMVVWGRNG 28


>emb|CAA10628.1| (AJ132265) Ycf6 protein [Skeletonema costatum]
          Length = 29

 Score = 49.2 bits (115), Expect = 6e-06
 Identities = 20/28 (71%), Positives = 25/28 (88%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
          MDI+SL WA +M +FTFSL+LVVWGR+G
Sbjct: 1  MDIISLGWAGVMTMFTFSLALVVWGRNG 28


>gi|11467521 ORF29 [Odontella sinensis]
 sp|P49527|YCF6_ODOSI HYPOTHETICAL 3.2 KD PROTEIN YCF6 (ORF29)
 pir||S78326 conserved hypothetical protein 29 - Odontella sinensis
          chloroplast
 emb|CAA91699.1| (Z67753) ORF29 [Odontella sinensis]
          Length = 29

 Score = 48.0 bits (112), Expect = 1e-05
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
          MDI+SL WA LM +FTFSL+LVVW R+G
Sbjct: 1  MDIISLGWAGLMTMFTFSLALVVWARNG 28


>gi|11466383 hypothetical chloroplast RF6 [Mesostigma viride]
 sp|Q9MUS4|YCF6_MESVI HYPOTHETICAL 3.3 KDA PROTEIN YCF6 (RF6)
 gb|AAF43827.1|AF166114_39 (AF166114) hypothetical chloroplast RF6 [Mesostigma viride]
          Length = 29

 Score = 47.6 bits (111), Expect = 2e-05
 Identities = 21/29 (72%), Positives = 24/29 (82%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
          MDI+SL W  LMV F+FSLSLVVW R+GL
Sbjct: 1  MDIISLGWVFLMVFFSFSLSLVVWARNGL 29


>gb|AAD55570.1|AF110788_1 (AF110788) unknown [Volvox carteri f. nagariensis]
          Length = 98

 Score = 45.3 bits (105), Expect = 9e-05
 Identities = 20/27 (74%), Positives = 23/27 (85%)

Query: 3  IVSLAWAALMVVFTFSLSLVVWGRSGL 29
          IV + WAA  V+F+FSLSLVVWGRSGL
Sbjct: 72 IVQIGWAATCVMFSFSLSLVVWGRSGL 98


>pir||S74572 hypothetical protein sml0004 - Synechocystis sp. (strain PCC
          6803)
 dbj|BAA16724.1| (D90900) hypothetical protein [Synechocystis sp.]
          Length = 29

 Score = 44.1 bits (102), Expect = 2e-04
 Identities = 16/28 (57%), Positives = 26/28 (92%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
          MDI++L W +++V+FT+S+S+VVWGR+G
Sbjct: 1  MDILTLGWVSVLVLFTWSISMVVWGRNG 28


>emb|CAB72247.2| (AJ271821) PetN protein [Anabaena variabilis]
          Length = 29

 Score = 43.8 bits (101), Expect = 3e-04
 Identities = 17/29 (58%), Positives = 26/29 (89%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
          M I++L W +L+VVFT+S+++VVWGR+GL
Sbjct: 1  MAILTLGWVSLLVVFTWSIAMVVWGRNGL 29


>gi|11465406 unknown [Cyanidium caldarium]
 gb|AAF12891.1|AF022186_13 (AF022186) unknown [Cyanidium caldarium]
          Length = 31

 Score = 39.9 bits (91), Expect = 0.004
 Identities = 17/28 (60%), Positives = 21/28 (74%)

Query: 1  MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
          + +V L WA LMV FT SL+LVVW R+G
Sbjct: 3  ISLVDLTWACLMVSFTVSLALVVWARNG 30


  Database: nr
    Posted date:  Mar 14, 2001  1:25 PM
  Number of letters in database: 201,912,487
  Number of sequences in database:  640,428
  
Lambda     K      H
   0.333    0.138    0.446 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9568806
Number of Sequences: 640428
Number of extensions: 122729
Number of successful extensions: 560
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 15
length of query: 29
length of database: 201,912,487
effective HSP length: 8
effective length of query: 21
effective length of database: 196,789,063
effective search space: 4132570323
effective search space used: 4132570323
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 63 (29.0 bits)


Lotus japonicus(Cp)