BLAST2 result
BLASTP 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33193.1 29 aa
(29 letters)
Database: nr
640,428 sequences; 201,912,487 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7525026 ycf6 [Arabidopsis thaliana] >gi|11465947|ref|NP_05448... 61 3e-09
ref|NP_043014.1| ORF29 [Zea mays] >gi|1363548|pir||S58541 hypoth... 59 7e-09
sp|P12177|YCF6_MARPO HYPOTHETICAL 3.2 KD PROTEIN (ORF 29) >gi|81... 58 2e-08
gi|7524617 ORF29 [Pinus thunbergii] >gi|1175649|sp|P41611|YCF6_P... 57 4e-08
gi|11467703 hypothetical chloroplast RF6 [Guillardia theta] >gi|... 53 6e-07
gi|11467359 ycf6 [Cyanophora paradoxa] >gi|1351784|sp|P48258|YCF... 51 2e-06
gi|11467793 hypothetical chloroplast RF6 [Nephroselmis olivacea]... 50 3e-06
gi|11465742 hypothetical chloroplast ORF 6. [Porphyra purpurea] ... 50 5e-06
emb|CAA10628.1| (AJ132265) Ycf6 protein [Skeletonema costatum] 49 6e-06
gi|11467521 ORF29 [Odontella sinensis] >gi|1351785|sp|P49527|YCF... 48 1e-05
gi|11466383 hypothetical chloroplast RF6 [Mesostigma viride] >gi... 48 2e-05
gb|AAD55570.1|AF110788_1 (AF110788) unknown [Volvox carteri f. n... 45 9e-05
pir||S74572 hypothetical protein sml0004 - Synechocystis sp. (st... 44 2e-04
emb|CAB72247.2| (AJ271821) PetN protein [Anabaena variabilis] 44 3e-04
gi|11465406 unknown [Cyanidium caldarium] >gi|6466309|gb|AAF1289... 40 0.004
>gi|7525026 ycf6 [Arabidopsis thaliana]
ref|NP_054489.1| Ycf6 protein [Nicotiana tabacum]
ref|NP_039372.1| ORF29 [Oryza sativa]
ref|NP_054925.1| ycf6 protein [Spinacia oleracea]
sp|P12178|YCF6_ORYSA HYPOTHETICAL 3.2 KDA PROTEIN (ORF 29)
pir||JQ0212 hypothetical 3K protein (trnI-trnC intergenic region) - rice
chloroplast
emb|CAA33985.1| (X15901) ORF29 [Oryza sativa]
emb|CAA77412.1| (Z00044) Ycf6 protein [Nicotiana tabacum]
dbj|BAA78039.1| (AB027572) ORF29 [Triticum aestivum]
dbj|BAA84378.1| (AP000423) ycf6 [Arabidopsis thaliana]
emb|CAB67149.1| (AJ271079) cytochrome b6f complex subunit VIII [Oenothera elata
subsp. hookeri]
emb|CAB88718.1| (AJ400848) ycf6 protein [Spinacia oleracea]
prf||1603356N ORF 29 [Oryza sativa]
Length = 29
Score = 60.5 bits (144), Expect = 3e-09
Identities = 29/29 (100%), Positives = 29/29 (100%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
MDIVSLAWAALMVVFTFSLSLVVWGRSGL
Sbjct: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
>ref|NP_043014.1| ORF29 [Zea mays]
pir||S58541 hypothetical protein 29 - maize chloroplast
emb|CAA60275.1| (X86563) ORF29 [Zea mays]
Length = 29
Score = 58.9 bits (140), Expect = 7e-09
Identities = 28/29 (96%), Positives = 28/29 (96%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
MDIVSL WAALMVVFTFSLSLVVWGRSGL
Sbjct: 1 MDIVSLTWAALMVVFTFSLSLVVWGRSGL 29
>sp|P12177|YCF6_MARPO HYPOTHETICAL 3.2 KD PROTEIN (ORF 29)
pir||S01572 hypothetical protein 29 - liverwort (Marchantia polymorpha)
chloroplast
Length = 29
Score = 57.8 bits (137), Expect = 2e-08
Identities = 25/29 (86%), Positives = 29/29 (99%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
MDI+++AWAALMV+FTFSLSLVVWGRSGL
Sbjct: 1 MDIINIAWAALMVIFTFSLSLVVWGRSGL 29
>gi|7524617 ORF29 [Pinus thunbergii]
sp|P41611|YCF6_PINTH HYPOTHETICAL 3.2 KD PROTEIN (ORF 29)
pir||T07450 hypothetical protein 29 - Japanese black pine chloroplast
dbj|BAA04328.1| (D17510) ORF29 [Pinus thunbergii]
Length = 29
Score = 56.6 bits (134), Expect = 4e-08
Identities = 26/29 (89%), Positives = 27/29 (92%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
MDIV + WAALMVVFTFSLSLVVWGRSGL
Sbjct: 1 MDIVGITWAALMVVFTFSLSLVVWGRSGL 29
>gi|11467703 hypothetical chloroplast RF6 [Guillardia theta]
sp|O78498|YCF6_GUITH HYPOTHETICAL 3.2 KD PROTEIN YCF6
gb|AAC35689.1| (AF041468) hypothetical chloroplast RF6 [Guillardia theta]
Length = 29
Score = 52.7 bits (124), Expect = 6e-07
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
MDI+SL W+ALMVVFTFSL+LVVWGR+G
Sbjct: 1 MDILSLGWSALMVVFTFSLALVVWGRNG 28
>gi|11467359 ycf6 [Cyanophora paradoxa]
sp|P48258|YCF6_CYAPA HYPOTHETICAL 3.2 KD PROTEIN YCF6
pir||T06904 hypothetical protein 6 - Cyanophora paradoxa cyanelle
gb|AAA81247.1| (U30821) ycf6 gene product [Cyanophora paradoxa]
Length = 29
Score = 51.2 bits (120), Expect = 2e-06
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
MDI+SL WAALM FTFSLSLVVWGR+G
Sbjct: 1 MDILSLGWAALMASFTFSLSLVVWGRNG 28
>gi|11467793 hypothetical chloroplast RF6 [Nephroselmis olivacea]
gb|AAD54815.1|AF137379_38 (AF137379) hypothetical chloroplast RF6 [Nephroselmis olivacea]
Length = 30
Score = 50.4 bits (118), Expect = 3e-06
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 2 DIVSLAWAALMVVFTFSLSLVVWGRSGL 29
DIVS WA LMV FTFSLSLVVWGRSGL
Sbjct: 3 DIVSAGWAFLMVSFTFSLSLVVWGRSGL 30
>gi|11465742 hypothetical chloroplast ORF 6. [Porphyra purpurea]
sp|P51276|YCF6_PORPU HYPOTHETICAL 3.2 KD PROTEIN YCF6 (ORF29)
pir||S73197 hypothetical protein 6 - red alga (Porphyra purpurea) chloroplast
gb|AAC08162.1| (U38804) hypothetical chloroplast ORF 6. [Porphyra purpurea]
Length = 29
Score = 49.6 bits (116), Expect = 5e-06
Identities = 20/28 (71%), Positives = 26/28 (92%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
MDI+SL WAALM +FTFS+++VVWGR+G
Sbjct: 1 MDILSLGWAALMAMFTFSIAMVVWGRNG 28
>emb|CAA10628.1| (AJ132265) Ycf6 protein [Skeletonema costatum]
Length = 29
Score = 49.2 bits (115), Expect = 6e-06
Identities = 20/28 (71%), Positives = 25/28 (88%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
MDI+SL WA +M +FTFSL+LVVWGR+G
Sbjct: 1 MDIISLGWAGVMTMFTFSLALVVWGRNG 28
>gi|11467521 ORF29 [Odontella sinensis]
sp|P49527|YCF6_ODOSI HYPOTHETICAL 3.2 KD PROTEIN YCF6 (ORF29)
pir||S78326 conserved hypothetical protein 29 - Odontella sinensis
chloroplast
emb|CAA91699.1| (Z67753) ORF29 [Odontella sinensis]
Length = 29
Score = 48.0 bits (112), Expect = 1e-05
Identities = 20/28 (71%), Positives = 24/28 (85%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
MDI+SL WA LM +FTFSL+LVVW R+G
Sbjct: 1 MDIISLGWAGLMTMFTFSLALVVWARNG 28
>gi|11466383 hypothetical chloroplast RF6 [Mesostigma viride]
sp|Q9MUS4|YCF6_MESVI HYPOTHETICAL 3.3 KDA PROTEIN YCF6 (RF6)
gb|AAF43827.1|AF166114_39 (AF166114) hypothetical chloroplast RF6 [Mesostigma viride]
Length = 29
Score = 47.6 bits (111), Expect = 2e-05
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
MDI+SL W LMV F+FSLSLVVW R+GL
Sbjct: 1 MDIISLGWVFLMVFFSFSLSLVVWARNGL 29
>gb|AAD55570.1|AF110788_1 (AF110788) unknown [Volvox carteri f. nagariensis]
Length = 98
Score = 45.3 bits (105), Expect = 9e-05
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 3 IVSLAWAALMVVFTFSLSLVVWGRSGL 29
IV + WAA V+F+FSLSLVVWGRSGL
Sbjct: 72 IVQIGWAATCVMFSFSLSLVVWGRSGL 98
>pir||S74572 hypothetical protein sml0004 - Synechocystis sp. (strain PCC
6803)
dbj|BAA16724.1| (D90900) hypothetical protein [Synechocystis sp.]
Length = 29
Score = 44.1 bits (102), Expect = 2e-04
Identities = 16/28 (57%), Positives = 26/28 (92%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
MDI++L W +++V+FT+S+S+VVWGR+G
Sbjct: 1 MDILTLGWVSVLVLFTWSISMVVWGRNG 28
>emb|CAB72247.2| (AJ271821) PetN protein [Anabaena variabilis]
Length = 29
Score = 43.8 bits (101), Expect = 3e-04
Identities = 17/29 (58%), Positives = 26/29 (89%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
M I++L W +L+VVFT+S+++VVWGR+GL
Sbjct: 1 MAILTLGWVSLLVVFTWSIAMVVWGRNGL 29
>gi|11465406 unknown [Cyanidium caldarium]
gb|AAF12891.1|AF022186_13 (AF022186) unknown [Cyanidium caldarium]
Length = 31
Score = 39.9 bits (91), Expect = 0.004
Identities = 17/28 (60%), Positives = 21/28 (74%)
Query: 1 MDIVSLAWAALMVVFTFSLSLVVWGRSG 28
+ +V L WA LMV FT SL+LVVW R+G
Sbjct: 3 ISLVDLTWACLMVSFTVSLALVVWARNG 30
Database: nr
Posted date: Mar 14, 2001 1:25 PM
Number of letters in database: 201,912,487
Number of sequences in database: 640,428
Lambda K H
0.333 0.138 0.446
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9568806
Number of Sequences: 640428
Number of extensions: 122729
Number of successful extensions: 560
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 15
length of query: 29
length of database: 201,912,487
effective HSP length: 8
effective length of query: 21
effective length of database: 196,789,063
effective search space: 4132570323
effective search space used: 4132570323
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 63 (29.0 bits)
Lotus japonicus(Cp)