![]() BLAST2 result BLASTP 2.1.2 [Oct-19-2000] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BAB33192.1 34 aa (34 letters) Database: nr 640,428 sequences; 201,912,487 total letters Searching..................................................done ![]() Score E Sequences producing significant alignments: (bits) Value sp|P34833|PSBM_PEA PHOTOSYSTEM II REACTION CENTER M PROTEIN >gi|... 66 4e-11 gi|7525027 PSII low MW protein [Arabidopsis thaliana] >gi|114659... 65 1e-10 emb|CAB67147.1| (AJ271079) PSII M-protein [Oenothera elata subsp... 65 1e-10 gi|11467180 PSII low MW protein [Zea mays] >gi|1346867|sp|P48189... 64 3e-10 dbj|BAA78038.1| (AB027572) PSII M-protein [Triticum aestivum] 62 8e-10 pir||S05215 photosystem II protein psbM - Synechococcus sp. (str... 59 7e-09 gi|11466677 ORF34 [Marchantia polymorpha] >gi|131371|sp|P12168|P... 59 1e-08 gi|11467757 M protein of photosystem II [Nephroselmis olivacea] ... 54 2e-07 gi|7524841 photosystem II PsbM protein [Chlorella vulgaris] >gi|... 53 3e-07 gi|11467393 PsbM subunit of the photosystem II reaction center c... 50 3e-06 sp|P92277|PSBM_CHLRE PHOTOSYSTEM II REACTION CENTER M PROTEIN >g... 50 4e-06 gi|7524622 PSII M protein [Pinus thunbergii] >gi|1172689|sp|P416... 49 8e-06 gi|11466399 M protein of photosystem II [Mesostigma viride] >gi|... 46 4e-05 sp|P72701|PSBM_SYNY3 PHOTOSYSTEM II REACTION CENTER M PROTEIN >g... 45 9e-05 sp|P12312|PSBM_SYNVU PHOTOSYSTEM II REACTION CENTER M PROTEIN 33 0.53 >sp|P34833|PSBM_PEA PHOTOSYSTEM II REACTION CENTER M PROTEIN dbj|BAA02098.1| (D12535) photosystem II polypeptide M [Pisum sativum] Length = 34 Score = 66.3 bits (159), Expect = 4e-11 Identities = 34/34 (100%), Positives = 34/34 (100%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 >gi|7525027 PSII low MW protein [Arabidopsis thaliana] ref|NP_054490.1| PSII M-protein [Nicotiana tabacum] ref|NP_039371.1| PSII low MW protein [Oryza sativa] ref|NP_054926.1| PSII M-protein [Spinacia oleracea] sp|P12169|PSBM_ORYSA PHOTOSYSTEM II REACTION CENTER M PROTEIN pir||F2RZM photosystem II protein psbM - rice chloroplast emb|CAA33984.1| (X15901) PSII low MW protein [Oryza sativa] emb|CAA77413.1| (Z00044) PSII M-protein [Nicotiana tabacum] dbj|BAA84379.1| (AP000423) PSII low MW protein [Arabidopsis thaliana] emb|CAB88719.1| (AJ400848) PSII M-protein [Spinacia oleracea] prf||1603356M photosystem II low MW protein [Oryza sativa] Length = 34 Score = 65.2 bits (156), Expect = 1e-10 Identities = 33/34 (97%), Positives = 34/34 (99%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 MEVNILAFIATALFILVPTAFLLIIYVKTVSQ+D Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQND 34 >emb|CAB67147.1| (AJ271079) PSII M-protein [Oenothera elata subsp. hookeri] Length = 34 Score = 64.8 bits (155), Expect = 1e-10 Identities = 33/34 (97%), Positives = 34/34 (99%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS+ Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSE 34 >gi|11467180 PSII low MW protein [Zea mays] sp|P48189|PSBM_MAIZE PHOTOSYSTEM II REACTION CENTER M PROTEIN pir||S58540 photosystem II protein psbM - maize chloroplast emb|CAA60274.1| (X86563) PSII low MW protein [Zea mays] Length = 34 Score = 63.6 bits (152), Expect = 3e-10 Identities = 32/34 (94%), Positives = 33/34 (96%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 MEVNILAFIATALFILVPTAFLLIIYVKT SQ+D Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTASQND 34 >dbj|BAA78038.1| (AB027572) PSII M-protein [Triticum aestivum] Length = 34 Score = 62.1 bits (148), Expect = 8e-10 Identities = 31/34 (91%), Positives = 34/34 (99%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 MEVNILAFIATALFILVPT+FLLIIYVKTVSQ++ Sbjct: 1 MEVNILAFIATALFILVPTSFLLIIYVKTVSQNN 34 >pir||S05215 photosystem II protein psbM - Synechococcus sp. (strain Copeland) Length = 34 Score = 58.9 bits (140), Expect = 7e-09 Identities = 29/34 (85%), Positives = 32/34 (93%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 MEVN L FIATALF+LVP+AFLLIIYVKTVSQ+D Sbjct: 1 MEVNQLGFIATALFVLVPSAFLLIIYVKTVSQND 34 >gi|11466677 ORF34 [Marchantia polymorpha] sp|P12168|PSBM_MARPO PHOTOSYSTEM II REACTION CENTER M PROTEIN pir||A05007 photosystem II protein psbM - liverwort (Marchantia polymorpha) chloroplast emb|CAA28059.1| (X04465) ORF34 [Marchantia polymorpha] Length = 34 Score = 58.6 bits (139), Expect = 1e-08 Identities = 28/33 (84%), Positives = 32/33 (96%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33 MEVNILAFIATALFIL+PTAFLLI+YV+T SQ+ Sbjct: 1 MEVNILAFIATALFILIPTAFLLILYVQTASQN 33 >gi|11467757 M protein of photosystem II [Nephroselmis olivacea] gb|AAD54779.1|AF137379_2 (AF137379) M protein of photosystem II [Nephroselmis olivacea] Length = 34 Score = 54.3 bits (128), Expect = 2e-07 Identities = 25/34 (73%), Positives = 30/34 (87%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 MEVNIL IATALFI++PT+FLLI+YVKT SQ + Sbjct: 1 MEVNILGLIATALFIIIPTSFLLILYVKTASQQN 34 >gi|7524841 photosystem II PsbM protein [Chlorella vulgaris] sp|P56325|PSBM_CHLVU PHOTOSYSTEM II REACTION CENTER M PROTEIN pir||T07271 photosystem II protein psbM - Chlorella vulgaris chloroplast dbj|BAA57919.1| (AB001684) photosystem II PsbM protein [Chlorella vulgaris] Length = 36 Score = 53.5 bits (126), Expect = 3e-07 Identities = 25/32 (78%), Positives = 29/32 (90%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQ 32 MEVNIL IATALFI++PT+FLLI+YVKT SQ Sbjct: 1 MEVNILGVIATALFIIIPTSFLLILYVKTASQ 32 >gi|11467393 PsbM subunit of the photosystem II reaction center complex [Cyanophora paradoxa] sp|P48107|PSBM_CYAPA PHOTOSYSTEM II REACTION CENTER M PROTEIN pir||T06938 photosystem II protein psbM - Cyanophora paradoxa cyanelle gb|AAA81281.1| (U30821) PsbM subunit of the photosystem II reaction center complex [Cyanophora paradoxa] Length = 38 Score = 50.4 bits (118), Expect = 3e-06 Identities = 22/33 (66%), Positives = 30/33 (90%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33 MEVNIL IATALFI++PT+FLLI+Y++TV+ + Sbjct: 1 MEVNILGLIATALFIVIPTSFLLILYIQTVASA 33 >sp|P92277|PSBM_CHLRE PHOTOSYSTEM II REACTION CENTER M PROTEIN pir||T08029 photosystem II protein psbM - Chlamydomonas reinhardtii chloroplast gb|AAB39941.1| (U81552) photosystem II subunit [Chlamydomonas reinhardtii] Length = 34 Score = 50.0 bits (117), Expect = 4e-06 Identities = 23/34 (67%), Positives = 27/34 (78%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 MEVNI ATALFI++PT+FLLI+YVKT S D Sbjct: 1 MEVNIYGLTATALFIIIPTSFLLILYVKTASTQD 34 >gi|7524622 PSII M protein [Pinus thunbergii] sp|P41608|PSBM_PINTH PHOTOSYSTEM II REACTION CENTER M PROTEIN pir||T07455 photosystem II protein psbM - Japanese black pine chloroplast dbj|BAA04333.1| (D17510) PSII M protein [Pinus thunbergii] Length = 37 Score = 48.8 bits (114), Expect = 8e-06 Identities = 25/33 (75%), Positives = 26/33 (78%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33 MEVN LAFIA LF+ VPTAFLLI YVKT S S Sbjct: 1 MEVNTLAFIAVLLFLAVPTAFLLIPYVKTASAS 33 >gi|11466399 M protein of photosystem II [Mesostigma viride] gb|AAF43843.1|AF166114_55 (AF166114) M protein of photosystem II [Mesostigma viride] Length = 31 Score = 46.5 bits (108), Expect = 4e-05 Identities = 20/29 (68%), Positives = 26/29 (88%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKT 29 ME NILA +ATALFI++PTAFL+I+Y +T Sbjct: 1 METNILALMATALFIIIPTAFLIILYAQT 29 >sp|P72701|PSBM_SYNY3 PHOTOSYSTEM II REACTION CENTER M PROTEIN pir||S74556 photosystem II psbM protein - Synechocystis sp. (strain PCC 6803) dbj|BAA16708.1| (D90900) photosystem II PsbM protein [Synechocystis sp.] Length = 35 Score = 45.3 bits (105), Expect = 9e-05 Identities = 20/34 (58%), Positives = 28/34 (81%) Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 M+VN L FIA+ LF+LVPT FLLI++++T QS+ Sbjct: 1 MQVNNLGFIASILFVLVPTVFLLILFIQTGKQSE 34 >sp|P12312|PSBM_SYNVU PHOTOSYSTEM II REACTION CENTER M PROTEIN Length = 19 Score = 32.8 bits (73), Expect = 0.53 Identities = 15/19 (78%), Positives = 17/19 (88%) Query: 1 MEVNILAFIATALFILVPT 19 MEVN L FIATALF+LVP+ Sbjct: 1 MEVNQLGFIATALFVLVPS 19 Database: nr Posted date: Mar 14, 2001 1:25 PM Number of letters in database: 201,912,487 Number of sequences in database: 640,428 Lambda K H 0.334 0.144 0.379 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8410219 Number of Sequences: 640428 Number of extensions: 117154 Number of successful extensions: 829 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 814 Number of HSP's gapped (non-prelim): 15 length of query: 34 length of database: 201,912,487 effective HSP length: 13 effective length of query: 21 effective length of database: 193,586,923 effective search space: 4065325383 effective search space used: 4065325383 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 39 (21.6 bits) S2: 63 (29.0 bits) Lotus japonicus(Cp) |