BLAST2 result
BLASTP 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33191.1 353 aa
(353 letters)
Database: nr
640,428 sequences; 201,912,487 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11465949 PSII D2 protein [Nicotiana tabacum] >gi|131301|sp|P0... 741 0.0
emb|CAA58959.1| (X84154) D2 protein, photosystem II subunit [Ant... 738 0.0
pir||F2PMD2 photosystem II protein D2 - garden pea chloroplast 736 0.0
gi|7525028 PSII D2 protein [Arabidopsis thaliana] >gi|6685787|sp... 735 0.0
gb|AAD24582.1|AF134324_1 (AF134324) Qa-binding protein PsbD [Pop... 735 0.0
emb|CAB67144.1| (AJ271079) PSII D2 protein [Oenothera elata subs... 733 0.0
gi|11466770 PSII D2 protein [Oryza sativa] >gi|131294|sp|P12095|... 732 0.0
gi|11497520 PSII D2 protein [Spinacia oleracea] >gi|131297|sp|P0... 732 0.0
sp|P06006|PSBD_PEA PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) P... 731 0.0
sp|P10803|PSBD_SECCE PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A)... 728 0.0
sp|P11849|PSBD_HORVU PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A)... 728 0.0
gi|11466698 psbD [Marchantia polymorpha] >gi|131293|sp|P06404|PS... 723 0.0
pir||S00929 photosystem II protein D2 - barley chloroplast >gi|1... 722 0.0
gi|7524716 PSII D2 protein [Pinus thunbergii] >gi|1172677|sp|P41... 719 0.0
gi|11467176 PSII D2 protein [Zea mays] >gi|1346850|sp|P48184|PSB... 713 0.0
gi|7524799 photosystem II D2 protein [Chlorella vulgaris] >gi|30... 698 0.0
gi|11467794 D2 reaction-center protein of photosystem II [Nephro... 695 0.0
prf||1209190A photosystem II protein D2 [Chlamydomonas reinhardtii] 693 0.0
sp|P06007|PSBD_CHLRE PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A)... 693 0.0
gb|AAF82675.1| (AF188854) photosystem II D2 protein [Nymphaea od... 686 0.0
gb|AAG26165.1| (AF123815) photosystem II D2 protein [Cabomba car... 685 0.0
gb|AAG44374.1| (AF235043) photosystem II D2 protein [Amborella t... 683 0.0
gb|AAG26161.1| (AF123813) photosystem II D2 protein [Acorus cala... 683 0.0
gb|AAG26167.1| (AF123816) photosystem II D2 protein [Calycanthus... 682 0.0
gi|11466345 D2 reaction center protein of photosystem II [Mesost... 682 0.0
gb|AAG26171.1| (AF123818) photosystem II D2 protein [Cercidiphyl... 681 0.0
gb|AAG26169.1| (AF123817) photosystem II D2 protein [Ceratophyll... 680 0.0
gb|AAG26177.1| (AF123821) photosystem II D2 protein [Ginkgo biloba] 680 0.0
gb|AAG26182.1| (AF123823) photosystem II D2 protein [Illicium pa... 679 0.0
gb|AAG26186.1| (AF123825) photosystem II D2 protein [Liriodendro... 679 0.0
dbj|BAA83437.1| (AB013661) photosystem II protein D2 [Coleochaet... 677 0.0
gb|AAG26163.1| (AF123814) photosystem II D2 protein [Asarum cana... 677 0.0
gb|AAF73303.1| (AF188848) photosystem II D2 protein [Zamia furfu... 676 0.0
gb|AAG26180.1| (AF123822) photosystem II D2 protein [Gnetum gnemon] 675 0.0
gb|AAG26173.1| (AF123819) photosystem II D2 protein [Dioscorea b... 673 0.0
gi|11467390 D2 protein of the photosystem II reaction center cor... 670 0.0
gi|11467543 PSII, D2 reaction-center protein [Odontella sinensis... 670 0.0
gb|AAG26175.1| (AF123820) photosystem II D2 protein [Drimys wint... 669 0.0
sp|P28253|PSBD_CYACA PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A)... 664 0.0
gi|11465589 unknown; Photosystem II D2 protein [Cyanidium caldar... 664 0.0
gi|11465823 Photosystem II D2 protein [Porphyra purpurea] >gi|17... 661 0.0
pir||S42646 photosystem II protein D2 - Anabaena sp. (strain PCC... 655 0.0
gi|11467626 PSII D2 reaction-center protein [Guillardia theta] >... 652 0.0
sp|P20898|PSBD_SYNP2 PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A)... 652 0.0
sp|P51766|PSBD_PROHO PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A)... 652 0.0
sp|P11005|PSBD_SYNP7 PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A)... 651 0.0
sp|P09192|PSBD_SYNY3 PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A)... 649 0.0
gi|11466982 PSII D2-polypeptide [Euglena gracilis] >gi|400884|sp... 648 0.0
dbj|BAA83443.1| (AB013667) photosystem II protein D2 [Anthoceros... 617 e-176
dbj|BAA83458.1| (AB013682) photosystem II protein D2 [Adiantum c... 611 e-174
dbj|BAA83431.1| (AB013655) photosystem II protein D2 [Physcomitr... 606 e-172
dbj|BAA83448.1| (AB013672) photosystem II protein D2 [Sphagnum f... 577 e-164
dbj|BAA83453.1| (AB013677) photosystem II protein D2 [Haplomitri... 568 e-161
emb|CAA30070.1| (X07018) psbD gene product (123 AA) [Synechocyst... 246 3e-64
gi|11465541 unknown; Photosystem II Q(b) protein (D1) [Cyanidium... 174 1e-42
gb|AAF89980.1|AF206706_2 (AF206706) PSII D1 reaction center prot... 172 5e-42
dbj|BAA83813.1| (AB025586) psbA [Amphidinium carterae] 172 5e-42
gb|AAF31417.1|AF206672_1 (AF206672) photosystem II protein D1 [A... 171 1e-41
dbj|BAA83815.1| (AB025588) psbA [Gonyaulax polyedra] 171 2e-41
gb|AAF25668.1|AF209094_1 (AF209094) photosystem II D2 protein [S... 170 2e-41
gi|11467479 PSII, D1 reaction-center protein [Odontella sinensis... 170 3e-41
gb|AAF37850.1|AF227740_1 (AF227740) photosystem II subunit core ... 169 6e-41
gb|AAD44700.1| (AF130033) PSII D1 reaction center protein [Heter... 169 6e-41
sp|P35877|PSB2_SYNEN PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 169 6e-41
gb|AAF89983.1|AF206709_1 (AF206709) PSII D1 reaction center prot... 168 8e-41
gb|AAF89981.1|AF206707_1 (AF206707) PSII D1 reaction center prot... 168 8e-41
gi|11466347 D1 reaction center protein of photosystem II [Mesost... 168 8e-41
gi|11467381 D1 protein of the photosystem II reaction center cor... 168 1e-40
sp|Q32389|PSBA_HETCA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 167 2e-40
sp|P07753|PSBA_CHLRE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 167 2e-40
pir||F2KTD1 photosystem II protein D1 precursor - Cyanophora par... 167 2e-40
gb|AAD51002.1|AF170924_1 (AF170924) photosystem II D1 protein [M... 166 5e-40
sp|P50155|PSBA_PICAB PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 165 7e-40
sp|P35876|PSB1_SYNEN PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 165 7e-40
sp|P46895|PSBA_PROMA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 165 9e-40
pir||S26586 photosystem II protein D1 precursor - Synechococcus ... 165 9e-40
sp|P29270|PSBA_ANAAZ PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 165 9e-40
sp|P48265|PSBA_BUMFI PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 164 1e-39
sp|P06585|PSBA_PEA PHOTOSYSTEM Q(B) PROTEIN PRECURSOR (32 KD THY... 164 1e-39
emb|CAA25447.1| (X00929) 32-Kda thylakoid membrane protein [Eugl... 164 1e-39
gb|AAD40182.1|AF156980_1 (AF156980) photosystem II D1 protein [S... 164 2e-39
gi|7524765 photosystem II D1 protein [Chlorella vulgaris] >gi|30... 164 2e-39
gi|7524753 PSII 32kDa protein [Pinus thunbergii] >gi|131254|sp|P... 164 2e-39
gi|11466695 psbA [Marchantia polymorpha] >gi|131249|sp|P06402|PS... 164 2e-39
gb|AAG60671.1|AF314010_1 (AF314010) PSII D1 protein [Prunus x ye... 164 2e-39
gi|11467759 D1 reaction-center protein of photosystem II [Nephro... 164 2e-39
emb|CAA04456.1| (AJ001003) 32 kD PSII D1 protein [Picea abies] 164 2e-39
sp|P15191|PSBA_PROHO PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 164 2e-39
gi|11466988 PSII D1-polypeptide [Euglena gracilis] >gi|464479|sp... 164 2e-39
sp|P04997|PSB2_SYNP7 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 163 3e-39
sp|P24725|PSBA_CYACA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 163 3e-39
dbj|BAA82776.2| (AB020605) psbA [Conocephalum conicum] 163 4e-39
dbj|BAA82781.1| (AB020621) similar to SWISS-PROT:p06402 [Conocep... 163 4e-39
dbj|BAA82767.1| (AB020584) psbA [Conocephalum conicum] 163 4e-39
dbj|BAA82757.1| (AB020574) psbA [Conocephalum conicum] >gi|56889... 163 4e-39
sp|Q33282|PSBA_VIGUN PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 163 4e-39
sp|P04998|PSBA_MEDSA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 163 4e-39
dbj|BAA76900.1| (AB025940) QB protein [Nicotiana tabacum] 162 5e-39
gb|AAD00106.1| (U63020) D1 protein [Magnolia pyramidata] 162 5e-39
gi|11467171 PSII 32 KDa protein [Zea mays] >gi|1346840|sp|P48183... 162 5e-39
gi|7525013 PSII 32 KDa protein [Arabidopsis thaliana] >gi|250008... 162 5e-39
sp|P36491|PSBA_POPDE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 5e-39
sp|P10510|PSBA_SECCE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 5e-39
sp|P18290|PSBA_BRANA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 5e-39
sp|P11848|PSBA_SINAL PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 5e-39
sp|P13910|PSBA_VICFA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 5e-39
sp|P04999|PSBA_PETHY PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 5e-39
gi|11466764 PSII 32kDa protein [Oryza sativa] >gi|131251|sp|P120... 162 5e-39
emb|CAA30818.1| (X08017) psbA polypeptide (AA 1-353) [Nicotiana ... 162 5e-39
sp|P05337|PSBA_HORVU PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 5e-39
sp|P02957|PSBA_SOYBN PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 5e-39
gi|11465935 PSII 32kd protein [Nicotiana tabacum] >gi|11497504|r... 162 5e-39
gb|AAK11251.1|AF329007_1 (AF329007) PSII D1 protein [Prunus x ye... 162 6e-39
gb|AAA74185.1| (U25659) photosystem II protein D1 [Solanum nigrum] 162 6e-39
sp|P04848|PSBA_TOBAC PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 6e-39
sp|P02956|PSBA_AMAHY PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 6e-39
sp|P32036|PSBA_CUSRE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 6e-39
sp|P51765|PSB1_SYNVU PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 8e-39
sp|P07063|PSBA_FREDI PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 162 8e-39
gb|AAK11250.1|AF329006_1 (AF329006) PSII D1 protein [Prunus x ye... 161 1e-38
dbj|BAA82770.1| (AB020587) psbA [Conocephalum conicum] >gi|58115... 161 1e-38
sp|P31694|PSB2_ANASP PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 161 1e-38
pir||F2NUD1 photosystem II protein D1 precursor - rye chloroplast 161 1e-38
sp|P09752|PSBA_CHLMO PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 161 1e-38
dbj|BAA83816.2| (AB025589) psbA [Alexandrium tamarense] 161 1e-38
dbj|BAA82779.1| (AB020619) similar to SWISS-PROT:p06402 [Conocep... 161 1e-38
gi|11467647 PSII D1 reaction-center protein [Guillardia theta] >... 161 1e-38
sp|P16033|PSB2_SYNY3 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 161 1e-38
sp|P24726|PSBA_ECTSI PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 161 1e-38
sp|P35860|PSBA_CHLEL PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 161 1e-38
dbj|BAA82764.1| (AB020581) psbA [Conocephalum conicum] >gi|56890... 161 2e-38
dbj|BAA82760.1| (AB020577) psbA [Conocephalum conicum] 161 2e-38
gi|11465678 Photosystem II Q(b) protein (D1) [Porphyra purpurea]... 161 2e-38
sp|P04996|PSB1_SYNP7 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 161 2e-38
gb|AAG60679.1|AF315339_1 (AF315339) PSII D1 protein [Prunus x ye... 160 2e-38
dbj|BAA82782.1| (AB020622) similar to SWISS-PROT:p06402 [Dumorti... 160 2e-38
sp|P27201|PSBA_SPIOG PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 160 3e-38
sp|P46242|PSB1_ANASP PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 159 4e-38
dbj|BAA83817.2| (AB025590) psbA [Alexandrium catenella] 159 5e-38
emb|CAA25252.1| (X00616) P32 protein [Nicotiana tabacum] 159 5e-38
sp|P51759|PSBA_CYAA5 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 159 7e-38
sp|P14660|PSBA_SYNY4 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 157 2e-37
gb|AAD34735.1| (AF131887) photosystem Q (B) protein precursor [P... 157 3e-37
sp|P51764|PSB2_MICAE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 157 3e-37
gb|AAD34734.1| (AF131886) mutant photosystem Q (B) protein precu... 156 4e-37
sp|P07826|PSB1_SYNY3 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 156 4e-37
gb|AAA84445.1| (K01200) psbA gene product [Amaranthus hybridus] ... 156 4e-37
gb|AAC99848.1| (U28165) photosystem II core 32 kDa protein [Palm... 156 5e-37
gb|AAK11254.1|AF329010_1 (AF329010) PSII D1 protein [Prunus x ye... 154 1e-36
gb|AAK11253.1|AF329009_1 (AF329009) PSII D1 protein [Prunus x ye... 154 1e-36
gb|AAK11252.1|AF329008_1 (AF329008) PSII D1 protein [Prunus x ye... 154 1e-36
gb|AAG60680.1|AF315340_1 (AF315340) PSII D1 protein [Prunus sarg... 154 1e-36
gb|AAG60681.1|AF315341_1 (AF315341) PSII D1 protein [Prunus serr... 154 2e-36
dbj|BAA86296.1| (AB027234) photosystem II core 32 kDa protein [G... 153 3e-36
emb|CAA68778.1| (Y00885) D1 protein (AA 1-360) [Synechocystis PC... 152 5e-36
gb|AAG60670.1|AF314009_1 (AF314009) PSII D1 protein [Prunus x ye... 151 1e-35
gb|AAF89984.1|AF206710_1 (AF206710) PSII D1 reaction center prot... 151 1e-35
dbj|BAA83812.1| (AB025585) psbA [Prorocentrum micans] 151 2e-35
gb|AAG60682.1|AF315342_1 (AF315342) PSII D1 protein [Prunus subh... 150 3e-35
sp|P24625|PSBA_ANTSP PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 149 5e-35
gb|AAB61276.1| (U96632) D1 protein, photosystem II [Ludisia disc... 148 1e-34
gb|AAF89986.1|AF206712_1 (AF206712) PSII D1 reaction center prot... 148 1e-34
gb|AAB61275.1| (U96631) D1 protein, photosystem II [Acorus grami... 139 5e-32
gb|AAB61274.1| (U96630) D1 protein, photosystem II [Phoenix dact... 136 4e-31
gb|AAD49557.1| (AF107784) PsbA [Trichodesmium sp. IMS101] 125 8e-28
gb|AAA85914.1| (L36958) photosystem II reaction center protein D... 120 4e-26
emb|CAA10627.1| (AJ132264) PSII D1 reaction-centre protein [Skel... 118 1e-25
pir||S24992 photosystem II protein D1 - common sunflower chlorop... 102 7e-21
pir||S48682 D1 protein - Spinach 97 3e-19
gb|AAF89985.1|AF206711_1 (AF206711) PSII D1 reaction center prot... 93 5e-18
pir||C31183 photosystem II protein D1 - barley chloroplast (frag... 78 2e-13
sp|P09438|RCEM_CHLAU REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTH... 71 2e-11
emb|CAA73828.1| (Y13398) D1 protein [Porphyra linearis] 69 9e-11
prf||1703253B photosyn reaction center M [Chloroflexus aurantiacus] 68 2e-10
emb|CAA10635.1| (AJ132266) PSII D2 reaction-centre protein [Skel... 67 4e-10
emb|CAA75354.1| (Y15074) D1 protein [Haslea ostrearia] 66 7e-10
sp|P10718|RCEM_RHORU REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTH... 65 1e-09
emb|CAA75405.1| (Y15137) D1 protein [Skeletonema costatum] 65 2e-09
gb|AAF08827.1| (AF193066) photosystem II Q(B) protein [Bassia sc... 63 6e-09
dbj|BAA25552.1| (AB005218) M subunit of photosynthetic reaction ... 62 8e-09
gb|AAB67247.1| (AF018955) reaction center M subunit [Ectothiorho... 62 1e-08
gb|AAD45367.1|AF161592_1 (AF161592) photosynthetic reaction cent... 61 3e-08
gb|AAD45366.1|AF161591_1 (AF161591) photosynthetic reaction cent... 61 3e-08
dbj|BAA22797.1| (D50654) photosynthetic reaction center L subuni... 61 3e-08
gb|AAB41577.1| (U51298) photosynthetic reaction center M subunit... 61 3e-08
sp|P51761|RCEM_RHOGE REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTH... 61 3e-08
dbj|BAA26099.1| (AB013379) M subunit of photosynthetic reaction ... 60 4e-08
gb|AAD45365.1|AF161590_1 (AF161590) photosynthetic reaction cent... 59 7e-08
dbj|BAA25566.1| (AB005222) M subunit of photosynthetic reaction ... 59 7e-08
dbj|BAA25564.1| (AB005221) M subunit of photosynthetic reaction ... 59 7e-08
dbj|BAA76947.1| (AB020784) pufL [Rhodovulum sulfidophilum] 59 1e-07
sp|Q01366|PSBA_PHAVU PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID M... 59 1e-07
gb|AAG42645.1| (AF182374) photosynthetic reaction center M subun... 59 1e-07
dbj|BAA25562.1| (AB005220) M subunit of photosynthetic reaction ... 59 1e-07
dbj|BAB19668.1| (AB028938) photosynthetic reaction center M subu... 58 2e-07
dbj|BAA33014.1| (AB017041) photosynthetic reaction center L subu... 58 2e-07
sp|P51763|RCEM_CHRVI REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTH... 58 2e-07
dbj|BAA21083.1| (D50647) photosynthetic reaction center M subuni... 58 2e-07
pdb|1EYS|M Chain M, Crystal Structure Of Photosynthetic Reaction... 58 2e-07
sp|P51751|RCEM_RHOPH REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTH... 58 2e-07
sp|P11847|RCEM_RHOCA REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTH... 58 2e-07
dbj|BAA22646.1| (D50651) photosynthetic reaction center M subuni... 57 3e-07
sp|P26280|RCEL_ERYSP REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 57 4e-07
dbj|BAB19667.1| (AB028938) photosynthetic reaction center L subu... 57 5e-07
dbj|BAA32549.1| (AB016989) photosynthetic reaction center L subu... 57 5e-07
dbj|BAA25901.1| (AB010873) photosynthetic reaction center L subu... 57 5e-07
sp|P19057|RCEL_RHOCA REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 57 5e-07
gb|AAG42644.1| (AF182374) photosynthetic reaction center L subun... 56 6e-07
gb|AAD45368.1|AF161593_1 (AF161593) photosynthetic reaction cent... 56 6e-07
dbj|BAA77029.1| (AB026182) photosynthetic reaction center L subu... 56 6e-07
pdb|1MPS|M Chain M, Photosynthetic Reaction Center Mutant With P... 56 6e-07
dbj|BAA32994.1| (AB015707) photosynthetic reaction center M subu... 56 6e-07
dbj|BAA32551.1| (AB016990) photosynthetic reaction center L subu... 56 6e-07
pdb|1QOV|M Chain M, Photosynthetic Reaction Center Mutant With A... 56 8e-07
pir||T50761 reaction center protein chain M [imported] - Rhodoba... 56 8e-07
gb|AAC16320.1| (AF061287) D1 protein [Senecio vulgaris] 56 8e-07
dbj|BAA22645.1| (D50651) photosynthetic reaction center L subuni... 56 8e-07
gb|AAB67246.1| (AF018955) reaction center L subunit [Ectothiorho... 56 8e-07
dbj|BAA09314.1| (D50647) photosynthetic reaction center L subuni... 56 8e-07
gb|AAD41904.1|AF159440_2 (AF159440) photosynthetic reaction cent... 55 1e-06
dbj|BAA25790.1| (AB010830) photosynthetic reaction center M subu... 55 1e-06
dbj|BAA22650.1| (D50653) photosynthetic reaction center M subuni... 55 1e-06
dbj|BAA22648.1| (D50652) photosynthetic reaction center M subuni... 55 1e-06
dbj|BAA22644.1| (D50650) photosynthetic reaction center M subuni... 55 1e-06
pdb|1E14|M Chain M, Photosynthetic Reaction Center Mutant With P... 55 1e-06
dbj|BAA87899.1| (AB018690) photosynthetic reaction center L subu... 55 1e-06
pdb|1DS8|M Chain M, Photosynthetic Reaction Center From Rhodobac... 55 2e-06
pir||T50760 reaction center protein chain L [imported] - Rhodoba... 55 2e-06
pdb|1AIJ|S Chain S, Photosynthetic Reaction Center From Rhodobac... 55 2e-06
pdb|1YST|M Chain M, Photosynthetic Reaction Center (Wild Type) 55 2e-06
pdb|1YST|L Chain L, Photosynthetic Reaction Center (Wild Type) 55 2e-06
pdb|1PSS|M Chain M, Photosynthetic Reaction Center (Wild-Type) 55 2e-06
pdb|1PSS|L Chain L, Photosynthetic Reaction Center (Wild-Type) >... 55 2e-06
pdb|2RCR|M Chain M, Photosynthetic Reaction Center From (Rhodoba... 55 2e-06
pdb|1E14|L Chain L, Photosynthetic Reaction Center Mutant With P... 55 2e-06
sp|P02953|RCEM_RHOSH REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTH... 55 2e-06
pir||S24213 reaction center protein chain M - Rhodobacter sphaer... 55 2e-06
sp|P02954|RCEL_RHOSH REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 55 2e-06
dbj|BAA96363.1| (AB043963) photosystem II Qb protein [Bruguiera ... 54 2e-06
dbj|BAA22643.1| (D50650) photosynthetic reaction center L subuni... 54 2e-06
dbj|BAA33002.1| (AB015977) photosynthetic reaction center M subu... 54 3e-06
dbj|BAA22649.1| (D50653) photosynthetic reaction center L subuni... 54 3e-06
pdb|1DXR|L Chain L, Photosynthetic Reaction Center From Rhodopse... 53 4e-06
dbj|BAA94252.1| (AB031015) photosynthetic reaction center M subu... 53 4e-06
dbj|BAA25789.1| (AB010830) photosynthetic reaction center L subu... 53 4e-06
dbj|BAA25728.1| (AB012060) photosynthetic reaction center M subu... 53 4e-06
dbj|BAA22647.1| (D50652) photosynthetic reaction center L subuni... 53 4e-06
pir||T10820 photosynthetic reaction center L - Rhodospirillum ph... 53 4e-06
sp|P51750|RCEL_RHOPH REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 53 4e-06
pdb|6PRC|L Chain L, Photosynthetic Reaction Center From Rhodopse... 53 4e-06
sp|P06009|RCEL_RHOVI REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 53 4e-06
dbj|BAA25903.1| (AB011073) photosynthetic reaction center L subu... 53 5e-06
pir||S68239 photosynthetic reaction center chain L, terbutryn-re... 53 5e-06
sp|P51760|RCEL_RHOGE REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 53 5e-06
pdb|1EYS|L Chain L, Crystal Structure Of Photosynthetic Reaction... 52 9e-06
pdb|1E6D|M Chain M, Photosynthetic Reaction Center Mutant With T... 52 9e-06
sp|P51762|RCEL_CHRVI REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 52 9e-06
gb|AAA84549.1| (M16899) 32 kDa membrane protein [Pisum sativum] 52 9e-06
sp|P10717|RCEL_RHORU REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 52 9e-06
sp|P11695|RCEL_CHLAU REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 52 9e-06
dbj|BAA94256.1| (AB031016) photosynthetic reaction center M subu... 52 1e-05
gb|AAD41903.1|AF159440_1 (AF159440) photosynthetic reaction cent... 52 1e-05
sp|O83005|RCEL_RHOPA REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 52 1e-05
dbj|BAA22798.1| (D50654) photosynthetic reaction center M subuni... 52 1e-05
dbj|BAA32993.1| (AB015707) photosynthetic reaction center L subu... 52 2e-05
sp|P26279|RCEM_ERYSP REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTH... 52 2e-05
emb|CAA40819.1| (X57597) pufM [Erythrobacter sp.] 52 2e-05
dbj|BAA96517.1| (AB035570) M subunit of photosynthetic reaction ... 51 2e-05
dbj|BAA94255.1| (AB031016) photosynthetic reaction center L subu... 51 2e-05
dbj|BAA78673.1| (AB027515) photosynthetic reaction center M subu... 51 2e-05
dbj|BAA76948.1| (AB020784) pufM [Rhodovulum sulfidophilum] 51 2e-05
dbj|BAA32996.1| (AB015708) photosynthetic reaction center M subu... 51 2e-05
dbj|BAA94251.1| (AB031015) photosynthetic reaction center L subu... 51 3e-05
dbj|BAA34815.1| (AB020599) photosynthetic reaction center L subu... 51 3e-05
dbj|BAA25727.1| (AB012060) photosynthetic reaction center L subu... 51 3e-05
dbj|BAA22641.1| (D50649) photosynthetic reaction center L subuni... 51 3e-05
dbj|BAA32995.1| (AB015708) photosynthetic reaction center L subu... 50 4e-05
pdb|1PST|M Chain M, Photosynthetic Reaction Center Mutant With H... 50 4e-05
dbj|BAA22640.1| (D50648) photosynthetic reaction center M subuni... 50 5e-05
dbj|BAA96516.1| (AB035570) L subunit of photosynthetic reaction ... 49 1e-04
dbj|BAA32999.1| (AB015710) photosynthetic reaction center L subu... 49 1e-04
dbj|BAA25722.1| (AB011074) photosynthetic reaction center L subu... 49 1e-04
dbj|BAA25791.1| (AB010981) photosynthetic reaction center L subu... 48 1e-04
dbj|BAA25723.1| (AB011074) photosynthetic reaction center M sub... 48 1e-04
sp|O66141|RCEL_ACIOR REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 48 1e-04
sp|O66139|RCEL_ACIMU REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 48 1e-04
sp|O66137|RCEL_ACICY REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTH... 48 1e-04
dbj|BAA78672.1| (AB027515) photosynthetic reaction center L subu... 48 2e-04
dbj|BAA33000.1| (AB015710) photosynthetic reaction center M subu... 48 2e-04
dbj|BAA32997.1| (AB015709) photosynthetic reaction center L subu... 48 2e-04
dbj|BAA25904.1| (AB011073) photosynthetic reaction center M subu... 48 2e-04
dbj|BAA25551.1| (AB005218) L subunit of photosynthetic reaction ... 48 2e-04
dbj|BAA22639.1| (D50648) photosynthetic reaction center L subuni... 48 2e-04
dbj|BAA87900.1| (AB018690) photosynthetic reaction center M subu... 47 3e-04
dbj|BAA32998.1| (AB015709) photosynthetic reaction center M subu... 47 4e-04
dbj|BAA26098.1| (AB013379) L subunit of photosynthetic reaction ... 46 5e-04
dbj|BAA22642.1| (D50649) photosynthetic reaction center M subuni... 46 5e-04
pdb|1DXR|M Chain M, Photosynthetic Reaction Center From Rhodopse... 46 7e-04
prf||1308226B photosynthetic reaction center M [Rhodopseudomonas... 46 7e-04
sp|P06010|RCEM_RHOVI REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTH... 46 7e-04
dbj|BAA25792.1| (AB010981) photosynthetic reaction center M subu... 46 0.001
prf||1006312A protein QB [Solanum nigrum] 46 0.001
dbj|BAA33015.1| (AB017041) photosynthetic reaction center M subu... 45 0.002
dbj|BAA25902.1| (AB010873) photosynthetic reaction center M subu... 45 0.002
dbj|BAA34816.1| (AB020599) photosynthetic reaction center M subu... 45 0.002
dbj|BAA32552.1| (AB016990) photosynthetic reaction center M subu... 43 0.006
dbj|BAA32550.1| (AB016989) photosynthetic reaction center M subu... 43 0.008
dbj|BAA77030.1| (AB026182) photosynthetic reaction center M subu... 42 0.011
pir||S09188 photosystem II 32K protein - spinach (fragments) 39 0.070
gb|AAA84105.1| (M19053) thylakoid membrane protein [Chenopodium ... 38 0.16
pir||T40015 phosphatidylethanolamine methyltransferase - fission... 34 2.3
gb|AAB61410.1| (AF004113) phosphatidylethanolamine methyltransfe... 34 2.3
gb|AAG59897.1|AF333236_1 (AF333236) photosynthetic reaction cent... 34 3.0
pir||G81824 probable integral membrane ion transporter NMA1961 [... 34 4.0
pir||F81050 sodium- and chloride-dependent transporter NMB1707 [... 34 4.0
pir||T02268 potassium transport protein homolog T13D8.5 - Arabid... 34 4.0
pir||B82172 conserved hypothetical protein VC1656 [imported] - V... 33 5.2
dbj|BAB05143.1| (AP001512) BH1424~unknown [Bacillus halodurans] 33 6.9
pir||F71490 hypothetical protein CT642 - Chlamydia trachomatis (... 32 9.0
gi|11498952 phosphate ABC transporter, periplasmic phosphate-bin... 32 9.0
>gi|11465949 PSII D2 protein [Nicotiana tabacum]
sp|P06403|PSBD_TOBAC PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||F2NTD2 photosystem II protein D2 - common tobacco chloroplast
pir||S52397 photosystem II protein D2 - garden snapdragon chloroplast
emb|CAA77347.1| (Z00044) PSII D2 protein [Nicotiana tabacum]
emb|CAA58960.1| (X84155) photosystem I subunit [Antirrhinum majus]
prf||1211235V photosystem II D2 protein [Nicotiana tabacum]
Length = 353
Score = 741 bits (1892), Expect = 0.0
Identities = 352/353 (99%), Positives = 353/353 (99%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTTFVTSWY
Sbjct: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>emb|CAA58959.1| (X84154) D2 protein, photosystem II subunit [Antirrhinum majus]
Length = 353
Score = 738 bits (1884), Expect = 0.0
Identities = 351/353 (99%), Positives = 352/353 (99%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTTFVTSWY
Sbjct: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIF EEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFSEEVLPRGNAL 353
>pir||F2PMD2 photosystem II protein D2 - garden pea chloroplast
Length = 353
Score = 736 bits (1879), Expect = 0.0
Identities = 349/353 (98%), Positives = 351/353 (98%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALGKFTKD+NDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTTFVTSWY
Sbjct: 1 MTIALGKFTKDQNDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGD TRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDLTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMA QDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMATQDQPHENLIFPEEVLPRGNAL 353
>gi|7525028 PSII D2 protein [Arabidopsis thaliana]
sp|P56761|PSBD_ARATH PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
dbj|BAA84380.1| (AP000423) PSII D2 protein [Arabidopsis thaliana]
Length = 353
Score = 735 bits (1878), Expect = 0.0
Identities = 350/353 (99%), Positives = 350/353 (99%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALGKFTKDE DLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLW FVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>gb|AAD24582.1|AF134324_1 (AF134324) Qa-binding protein PsbD [Populus deltoides]
Length = 353
Score = 735 bits (1876), Expect = 0.0
Identities = 349/353 (98%), Positives = 350/353 (98%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLL+FPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLVFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THG ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGG WTFVALHGA
Sbjct: 61 THGWASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGFWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFELARSVQLRPYNAIAFS PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>emb|CAB67144.1| (AJ271079) PSII D2 protein [Oenothera elata subsp. hookeri]
Length = 353
Score = 733 bits (1872), Expect = 0.0
Identities = 348/353 (98%), Positives = 350/353 (98%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALGKFTKDE DLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFE+ARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FALIGFMLRQFEIARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMG+AGVLGAALLCAIHGATVE TLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGIAGVLGAALLCAIHGATVEYTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>gi|11466770 PSII D2 protein [Oryza sativa]
sp|P12095|PSBD_ORYSA PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||F2RZD2 photosystem II protein D2 - rice chloroplast
emb|CAA34013.1| (X15901) PSII D2 protein [Oryza sativa]
prf||1603356G photosystem II D2 protein [Oryza sativa]
Length = 353
Score = 732 bits (1870), Expect = 0.0
Identities = 347/353 (98%), Positives = 351/353 (99%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALG+ TK+ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIALGRVTKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFELARSVQLRPYNAI+FSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FALIGFMLRQFELARSVQLRPYNAISFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>gi|11497520 PSII D2 protein [Spinacia oleracea]
sp|P06005|PSBD_SPIOL PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||F2SPD2 photosystem II protein D2 [validated] - spinach chloroplast
gb|AAA84633.1| (M27308) D2 photosystem II protein [Spinacia oleracea]
gb|AAA84630.1| (M36833) 32 Kd-like protein [Spinacia oleracea]
emb|CAB88721.1| (AJ400848) PSII D2 protein [Spinacia oleracea]
Length = 353
Score = 732 bits (1869), Expect = 0.0
Identities = 348/353 (98%), Positives = 349/353 (98%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+GKFTKDE DLFD MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIAVGKFTKDEKDLFDSMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLW FVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>sp|P06006|PSBD_PEA PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
gb|AAB59335.1| (M27309) D2 photosystem II protein [Pisum sativum]
Length = 353
Score = 731 bits (1867), Expect = 0.0
Identities = 347/353 (98%), Positives = 350/353 (98%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALGKFTKD+NDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA+GGWFTGTTFVTSWY
Sbjct: 1 MTIALGKFTKDQNDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGD TRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDLTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGA VENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGAIVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWL+FFMLFVPVTGLWMSALGVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLYFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMA QDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMATQDQPHENLIFPEEVLPRGNAL 353
>sp|P10803|PSBD_SECCE PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||S03435 photosystem II protein D2 - rye chloroplast
emb|CAA31743.1| (X13366) D2 polypeptide (AA 1 - 353) [Secale cereale]
Length = 353
Score = 728 bits (1860), Expect = 0.0
Identities = 345/353 (97%), Positives = 349/353 (98%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALG+ K+ENDLFD MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIALGRIPKEENDLFDTMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFELARSVQLRPYNAI+FSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FALIGFMLRQFELARSVQLRPYNAISFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>sp|P11849|PSBD_HORVU PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||A31183 photosystem II protein D2 - barley chloroplast
gb|AAA84047.1| (M38290) membrane polypeptide D2 [Hordeum vulgare]
Length = 353
Score = 728 bits (1859), Expect = 0.0
Identities = 345/353 (97%), Positives = 349/353 (98%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALG+ K+ENDLFD MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIALGRVPKEENDLFDTMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFELARSVQLRPYNAI+FSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FALIGFMLRQFELARSVQLRPYNAISFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>gi|11466698 psbD [Marchantia polymorpha]
sp|P06404|PSBD_MARPO PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||F2LVD2 photosystem II protein D2 - liverwort (Marchantia polymorpha)
chloroplast
emb|CAA28080.1| (X04465) psbD [Marchantia polymorpha]
Length = 353
Score = 723 bits (1846), Expect = 0.0
Identities = 342/353 (96%), Positives = 348/353 (97%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+GK +K+ LFD MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIAIGKSSKEPKGLFDSMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
+EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 241 SEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENL+FPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLVFPEEVLPRGNAL 353
>pir||S00929 photosystem II protein D2 - barley chloroplast
emb|CAA30401.1| (X07522) D2 protein (psbD) (AA 1-353) [Hordeum vulgare]
Length = 353
Score = 722 bits (1843), Expect = 0.0
Identities = 342/353 (96%), Positives = 346/353 (97%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALG+ K+ENDLFD MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIALGRVPKEENDLFDTMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFELARSVQLRPYNAI+FSGPIAVFVSVFLIYPLGQS WFF P FGVAAIF
Sbjct: 121 FALIGFMLRQFELARSVQLRPYNAISFSGPIAVFVSVFLIYPLGQSDWFFPPDFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>gi|7524716 PSII D2 protein [Pinus thunbergii]
sp|P41644|PSBD_PINTH PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||T07549 photosystem II protein D2 - Japanese black pine chloroplast
dbj|BAA04425.1| (D17510) PSII D2 protein [Pinus thunbergii]
Length = 353
Score = 719 bits (1835), Expect = 0.0
Identities = 342/353 (96%), Positives = 346/353 (97%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALGK +K+E LFD +DDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIALGKSSKEEKTLFDTVDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGD TRWCQLGGLWTFVALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDLTRWCQLGGLWTFVALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFELARSVQLRPYNAIAFS PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPE ETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPESETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>gi|11467176 PSII D2 protein [Zea mays]
sp|P48184|PSBD_MAIZE PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||S58536 photosystem II protein D2 - maize chloroplast
emb|CAA60270.1| (X86563) PSII D2 protein [Zea mays]
Length = 353
Score = 713 bits (1820), Expect = 0.0
Identities = 336/353 (95%), Positives = 346/353 (97%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ TK+ENDLF ++DDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIAVGRVTKEENDLFPLIDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRW QLGGLWTF+ALHGA
Sbjct: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWSQLGGLWTFLALHGA 120
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFELAR VQLRPYNAI+FSGPIAVF+SVFLIYPLGQSGWFF+PSFGVAAIF
Sbjct: 121 FALIGFMLRQFELARPVQLRPYNAISFSGPIAVFLSVFLIYPLGQSGWFFSPSFGVAAIF 180
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTL PFHMMGVAGVLGA LLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 181 RFILFFQGFHNWTLKPFHMMGVAGVLGAVLLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFV 300
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
>gi|7524799 photosystem II D2 protein [Chlorella vulgaris]
sp|P56319|PSBD_CHLVU PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||T07229 photosystem II protein D2 - Chlorella vulgaris chloroplast
dbj|BAA57876.1| (AB001684) photosystem II D2 protein [Chlorella vulgaris]
Length = 352
Score = 698 bits (1781), Expect = 0.0
Identities = 328/353 (92%), Positives = 343/353 (96%), Gaps = 1/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+GK T+++ LFD++DDWLRRDRFVFVGWSGLLLFP AY ALGGWFTGTTFVTSWY
Sbjct: 1 MTIAIGK-TQEKRGLFDVVDDWLRRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWY 59
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLA+SYLEGCNFLTAAVSTPANS+ HSLL LWGPEAQGDFTRWCQLGGLWTFVALHG+
Sbjct: 60 THGLATSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQLGGLWTFVALHGS 119
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFE+ARSV++RPYNAIAFS PI+VFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 120 FALIGFMLRQFEIARSVKIRPYNAIAFSAPISVFVSVFLIYPLGQSGWFFAPSFGVAAIF 179
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 180 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 239
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 240 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFV 299
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHE L+FPEEVLPRGNAL
Sbjct: 300 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHEKLVFPEEVLPRGNAL 352
>gi|11467794 D2 reaction-center protein of photosystem II [Nephroselmis
olivacea]
gb|AAD54816.1|AF137379_39 (AF137379) D2 reaction-center protein of photosystem II
[Nephroselmis olivacea]
Length = 352
Score = 695 bits (1773), Expect = 0.0
Identities = 325/353 (92%), Positives = 342/353 (96%), Gaps = 1/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G +++ LFD MDDWLRRDRFVFVGWSGLLL PCAYFA+GGW TGTTFVTSWY
Sbjct: 1 MTIAIGT-PEEKRGLFDDMDDWLRRDRFVFVGWSGLLLLPCAYFAVGGWLTGTTFVTSWY 59
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCN LTAAVSTPANS+AHSLLLLWGPEAQGDFTRWCQLGGLWTF+ALHG+
Sbjct: 60 THGLASSYLEGCNVLTAAVSTPANSMAHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGS 119
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFE+AR++ LRPYNAIAFSGPI+VFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 120 FGLIGFMLRQFEIARAIGLRPYNAIAFSGPISVFVSVFLIYPLGQSGWFFAPSFGVAAIF 179
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 180 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 239
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 240 AEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFV 299
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQE+RAAEDPEFETFYTKN+LLNEGIRAWMAAQDQPHE L+FPEEVLPRGNAL
Sbjct: 300 SQELRAAEDPEFETFYTKNLLLNEGIRAWMAAQDQPHEKLVFPEEVLPRGNAL 352
>prf||1209190A photosystem II protein D2 [Chlamydomonas reinhardtii]
Length = 363
Score = 693 bits (1768), Expect = 0.0
Identities = 327/353 (92%), Positives = 339/353 (95%), Gaps = 1/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G + +++ FD DDWLR+DRFVFVGWSGLLLFPCAYFALGGW TGTTFVTSWY
Sbjct: 12 MTIAIGTY-QEKRTWFDDADDWLRQDRFVFVGWSGLLLFPCAYFALGGWLTGTTFVTSWY 70
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLA+SYLEGCNFLTAAVSTPANS+AHSLL +WGPEAQGDFTRWCQLGGLW FVALHGA
Sbjct: 71 THGLATSYLEGCNFLTAAVSTPANSMAHSLLFVWGPEAQGDFTRWCQLGGLWAFVALHGA 130
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFE+ARSV LRPYNAIAFS PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 131 FGLIGFMLRQFEIARSVNLRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 190
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 191 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 250
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFML VPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 251 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLLVPVTGLWMSAIGVVGLALNLRAYDFV 310
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHE L+FPEEVLPRGNAL
Sbjct: 311 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHERLVFPEEVLPRGNAL 363
>sp|P06007|PSBD_CHLRE PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||A25466 photosystem II protein D2 - Chlamydomonas reinhardtii chloroplast
emb|CAA27766.1| (X04147) D2 protein (aa 1-352) [Chlamydomonas reinhardtii]
Length = 352
Score = 693 bits (1768), Expect = 0.0
Identities = 327/353 (92%), Positives = 339/353 (95%), Gaps = 1/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G + +++ FD DDWLR+DRFVFVGWSGLLLFPCAYFALGGW TGTTFVTSWY
Sbjct: 1 MTIAIGTY-QEKRTWFDDADDWLRQDRFVFVGWSGLLLFPCAYFALGGWLTGTTFVTSWY 59
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLA+SYLEGCNFLTAAVSTPANS+AHSLL +WGPEAQGDFTRWCQLGGLW FVALHGA
Sbjct: 60 THGLATSYLEGCNFLTAAVSTPANSMAHSLLFVWGPEAQGDFTRWCQLGGLWAFVALHGA 119
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFE+ARSV LRPYNAIAFS PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF
Sbjct: 120 FGLIGFMLRQFEIARSVNLRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 179
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ
Sbjct: 180 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 239
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFML VPVTGLWMSA+GVVGLALNLRAYDFV
Sbjct: 240 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLLVPVTGLWMSAIGVVGLALNLRAYDFV 299
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHE L+FPEEVLPRGNAL
Sbjct: 300 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHERLVFPEEVLPRGNAL 352
>gb|AAF82675.1| (AF188854) photosystem II D2 protein [Nymphaea odorata]
Length = 326
Score = 686 bits (1750), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Query: 28 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 87
FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA
Sbjct: 1 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 60
Query: 88 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 147
HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF
Sbjct: 61 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 120
Query: 148 SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 207
SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG
Sbjct: 121 SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 180
Query: 208 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 267
AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 181 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 240
Query: 268 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 327
LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR
Sbjct: 241 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 300
Query: 328 AWMAAQDQPHENLIFPEEVLPRGNAL 353
AWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 AWMAAQDQPHENLIFPEEVLPRGNAL 326
>gb|AAG26165.1| (AF123815) photosystem II D2 protein [Cabomba caroliniana]
Length = 326
Score = 685 bits (1748), Expect = 0.0
Identities = 325/326 (99%), Positives = 326/326 (99%)
Query: 28 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 87
FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA
Sbjct: 1 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 60
Query: 88 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 147
HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF
Sbjct: 61 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 120
Query: 148 SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 207
SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG
Sbjct: 121 SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 180
Query: 208 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 267
AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 181 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 240
Query: 268 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 327
LHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR
Sbjct: 241 LHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 300
Query: 328 AWMAAQDQPHENLIFPEEVLPRGNAL 353
AWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 AWMAAQDQPHENLIFPEEVLPRGNAL 326
>gb|AAG44374.1| (AF235043) photosystem II D2 protein [Amborella trichopoda]
Length = 326
Score = 683 bits (1744), Expect = 0.0
Identities = 325/326 (99%), Positives = 325/326 (99%)
Query: 28 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 87
FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA
Sbjct: 1 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 60
Query: 88 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 147
HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF
Sbjct: 61 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 120
Query: 148 SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 207
S PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG
Sbjct: 121 SAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 180
Query: 208 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 267
AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 181 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 240
Query: 268 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 327
LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR
Sbjct: 241 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 300
Query: 328 AWMAAQDQPHENLIFPEEVLPRGNAL 353
AWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 AWMAAQDQPHENLIFPEEVLPRGNAL 326
>gb|AAG26161.1| (AF123813) photosystem II D2 protein [Acorus calamus]
gb|AAG26184.1| (AF123824) photosystem II D2 protein [Lactoris fernandeziana]
Length = 325
Score = 683 bits (1744), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH 88
VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH
Sbjct: 1 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH 60
Query: 89 SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS 148
SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS
Sbjct: 61 SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS 120
Query: 149 GPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA 208
GPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA
Sbjct: 121 GPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA 180
Query: 209 ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL 268
ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL
Sbjct: 181 ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL 240
Query: 269 HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRA 328
HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRA
Sbjct: 241 HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRA 300
Query: 329 WMAAQDQPHENLIFPEEVLPRGNAL 353
WMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 WMAAQDQPHENLIFPEEVLPRGNAL 325
>gb|AAG26167.1| (AF123816) photosystem II D2 protein [Calycanthus floridus]
Length = 326
Score = 682 bits (1742), Expect = 0.0
Identities = 324/326 (99%), Positives = 325/326 (99%)
Query: 28 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 87
FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA
Sbjct: 1 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 60
Query: 88 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 147
HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF
Sbjct: 61 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 120
Query: 148 SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 207
S PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG
Sbjct: 121 SAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 180
Query: 208 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 267
AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 181 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 240
Query: 268 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 327
LHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR
Sbjct: 241 LHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 300
Query: 328 AWMAAQDQPHENLIFPEEVLPRGNAL 353
AWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 AWMAAQDQPHENLIFPEEVLPRGNAL 326
>gi|11466345 D2 reaction center protein of photosystem II [Mesostigma viride]
gb|AAF43789.1|AF166114_1 (AF166114) D2 reaction center protein of photosystem II [Mesostigma
viride]
Length = 354
Score = 682 bits (1741), Expect = 0.0
Identities = 319/354 (90%), Positives = 338/354 (95%), Gaps = 1/354 (0%)
Query: 1 MTIALGKFTKD-ENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSW 59
MTI++ K K E +FD+ DDWL+RDRFVF+GWSGLLL PCAYFALGG+FTG TFVTSW
Sbjct: 1 MTISIDKSVKKAEPSIFDLCDDWLKRDRFVFIGWSGLLLLPCAYFALGGFFTGNTFVTSW 60
Query: 60 YTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHG 119
YTHGLASSYLEGCN LTAAVSTP+N++ HSLLLLWGPEAQGDFTRWCQLGGLWTF ALHG
Sbjct: 61 YTHGLASSYLEGCNVLTAAVSTPSNAMGHSLLLLWGPEAQGDFTRWCQLGGLWTFTALHG 120
Query: 120 AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAI 179
AFGLIGFMLRQFE+AR+V++RPYNAIAFSGPIAVFVSVFLIYPLGQ WFFAPSFGVAAI
Sbjct: 121 AFGLIGFMLRQFEIARAVKIRPYNAIAFSGPIAVFVSVFLIYPLGQQSWFFAPSFGVAAI 180
Query: 180 FRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPT 239
FRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGD ANTFRAFNPT
Sbjct: 181 FRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDAANTFRAFNPT 240
Query: 240 QAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
Q+EETYSMVTANRFWSQIFGVAF+NKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDF
Sbjct: 241 QSEETYSMVTANRFWSQIFGVAFANKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDF 300
Query: 300 VSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
VSQEIRAAEDPEFETFYTKN+LLNEGIRAWMAAQDQPHENL+FPEEVLPRGNAL
Sbjct: 301 VSQEIRAAEDPEFETFYTKNLLLNEGIRAWMAAQDQPHENLVFPEEVLPRGNAL 354
>gb|AAG26171.1| (AF123818) photosystem II D2 protein [Cercidiphyllum japonicum]
gb|AAG26187.1| (AF123826) photosystem II D2 protein [Saururus cernuus]
Length = 325
Score = 681 bits (1738), Expect = 0.0
Identities = 324/325 (99%), Positives = 324/325 (99%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH 88
VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH
Sbjct: 1 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH 60
Query: 89 SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS 148
SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS
Sbjct: 61 SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS 120
Query: 149 GPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA 208
PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA
Sbjct: 121 APIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA 180
Query: 209 ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL 268
ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL
Sbjct: 181 ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL 240
Query: 269 HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRA 328
HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRA
Sbjct: 241 HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRA 300
Query: 329 WMAAQDQPHENLIFPEEVLPRGNAL 353
WMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 WMAAQDQPHENLIFPEEVLPRGNAL 325
>gb|AAG26169.1| (AF123817) photosystem II D2 protein [Ceratophyllum demersum]
Length = 325
Score = 680 bits (1736), Expect = 0.0
Identities = 323/325 (99%), Positives = 324/325 (99%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH 88
VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH
Sbjct: 1 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH 60
Query: 89 SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS 148
SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS
Sbjct: 61 SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS 120
Query: 149 GPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA 208
PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA
Sbjct: 121 APIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA 180
Query: 209 ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL 268
ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL
Sbjct: 181 ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL 240
Query: 269 HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRA 328
HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKN+LLNEGIRA
Sbjct: 241 HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNLLLNEGIRA 300
Query: 329 WMAAQDQPHENLIFPEEVLPRGNAL 353
WMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 WMAAQDQPHENLIFPEEVLPRGNAL 325
>gb|AAG26177.1| (AF123821) photosystem II D2 protein [Ginkgo biloba]
Length = 326
Score = 680 bits (1735), Expect = 0.0
Identities = 322/326 (98%), Positives = 324/326 (98%)
Query: 28 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 87
FVFVGWSGLLLFPCAYFALGGWFTGTTF TSWYTHGLASSYLEGCNFLTAAVSTPANSLA
Sbjct: 1 FVFVGWSGLLLFPCAYFALGGWFTGTTFATSWYTHGLASSYLEGCNFLTAAVSTPANSLA 60
Query: 88 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 147
HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF
Sbjct: 61 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 120
Query: 148 SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 207
S PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG
Sbjct: 121 SAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 180
Query: 208 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 267
AALLCAIHGATVENTLFEDGDGANTFRAFNPTQ+EETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 181 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRW 240
Query: 268 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 327
LHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR
Sbjct: 241 LHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 300
Query: 328 AWMAAQDQPHENLIFPEEVLPRGNAL 353
AWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 AWMAAQDQPHENLIFPEEVLPRGNAL 326
>gb|AAG26182.1| (AF123823) photosystem II D2 protein [Illicium parviflorum]
gb|AAG26189.1| (AF123827) photosystem II D2 protein [Trochodendron aralioides]
Length = 324
Score = 679 bits (1734), Expect = 0.0
Identities = 323/324 (99%), Positives = 323/324 (99%)
Query: 30 FVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHS 89
FVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHS
Sbjct: 1 FVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHS 60
Query: 90 LLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSG 149
LLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS
Sbjct: 61 LLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSA 120
Query: 150 PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAA 209
PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAA
Sbjct: 121 PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAA 180
Query: 210 LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLH 269
LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLH
Sbjct: 181 LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLH 240
Query: 270 FFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAW 329
FFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAW
Sbjct: 241 FFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAW 300
Query: 330 MAAQDQPHENLIFPEEVLPRGNAL 353
MAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 MAAQDQPHENLIFPEEVLPRGNAL 324
>gb|AAG26186.1| (AF123825) photosystem II D2 protein [Liriodendron tulipifera]
Length = 324
Score = 679 bits (1732), Expect = 0.0
Identities = 322/324 (99%), Positives = 323/324 (99%)
Query: 30 FVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHS 89
FVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHS
Sbjct: 1 FVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHS 60
Query: 90 LLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSG 149
LLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS
Sbjct: 61 LLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSA 120
Query: 150 PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAA 209
PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAA
Sbjct: 121 PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAA 180
Query: 210 LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLH 269
LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLH
Sbjct: 181 LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLH 240
Query: 270 FFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAW 329
FFMLFVPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAW
Sbjct: 241 FFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAW 300
Query: 330 MAAQDQPHENLIFPEEVLPRGNAL 353
MAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 MAAQDQPHENLIFPEEVLPRGNAL 324
>dbj|BAA83437.1| (AB013661) photosystem II protein D2 [Coleochaete nitellarum]
Length = 331
Score = 677 bits (1729), Expect = 0.0
Identities = 318/331 (96%), Positives = 326/331 (98%)
Query: 23 LRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTP 82
LRRDRFVFVGWSGLLLFPCAYFALGGW TGTTFVTSWYTHGLASSYLEGCNFLTAAVSTP
Sbjct: 1 LRRDRFVFVGWSGLLLFPCAYFALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTP 60
Query: 83 ANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPY 142
ANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPY
Sbjct: 61 ANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPY 120
Query: 143 NAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGV 202
NAIAF+GPI++FVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGV
Sbjct: 121 NAIAFTGPISIFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGV 180
Query: 203 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF 262
AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ EETYS VTANRFWSQIFGVAF
Sbjct: 181 AGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQNEETYSFVTANRFWSQIFGVAF 240
Query: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322
SNKRWLHFFMLFVPV+GLW SA+G+VGLA+NLRAYDFVSQEIRAAEDPEFETFYTKNILL
Sbjct: 241 SNKRWLHFFMLFVPVSGLWASAIGIVGLAVNLRAYDFVSQEIRAAEDPEFETFYTKNILL 300
Query: 323 NEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
NEGIRAWMAAQDQPHENL+FPEE LPRGNAL
Sbjct: 301 NEGIRAWMAAQDQPHENLVFPEEXLPRGNAL 331
>gb|AAG26163.1| (AF123814) photosystem II D2 protein [Asarum canadense]
Length = 323
Score = 677 bits (1728), Expect = 0.0
Identities = 322/323 (99%), Positives = 322/323 (99%)
Query: 31 VGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSL 90
VGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSL
Sbjct: 1 VGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSL 60
Query: 91 LLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGP 150
LLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS P
Sbjct: 61 LLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSAP 120
Query: 151 IAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAAL 210
IAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAAL
Sbjct: 121 IAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAAL 180
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHF 270
LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHF
Sbjct: 181 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHF 240
Query: 271 FMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWM 330
FMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWM
Sbjct: 241 FMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWM 300
Query: 331 AAQDQPHENLIFPEEVLPRGNAL 353
AAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 AAQDQPHENLIFPEEVLPRGNAL 323
>gb|AAF73303.1| (AF188848) photosystem II D2 protein [Zamia furfuracea]
Length = 326
Score = 676 bits (1726), Expect = 0.0
Identities = 320/326 (98%), Positives = 322/326 (98%)
Query: 28 FVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 87
FVFVGWSGL LFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA
Sbjct: 1 FVFVGWSGLXLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLA 60
Query: 88 HSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAF 147
HSLLLLWGPEAQGDFTRWCQLGGLWTFVA HG FGLIGFMLRQFELARSVQLRPYNAIAF
Sbjct: 61 HSLLLLWGPEAQGDFTRWCQLGGLWTFVAFHGGFGLIGFMLRQFELARSVQLRPYNAIAF 120
Query: 148 SGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 207
S PIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG
Sbjct: 121 SAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLG 180
Query: 208 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 267
AALLCAIHGATVENTLFEDGDGANTFRAFNPTQ+EETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 181 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRW 240
Query: 268 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 327
LHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR
Sbjct: 241 LHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 300
Query: 328 AWMAAQDQPHENLIFPEEVLPRGNAL 353
AWMAAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 AWMAAQDQPHENLIFPEEVLPRGNAL 326
>gb|AAG26180.1| (AF123822) photosystem II D2 protein [Gnetum gnemon]
Length = 323
Score = 675 bits (1722), Expect = 0.0
Identities = 319/323 (98%), Positives = 322/323 (98%)
Query: 31 VGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSL 90
+GWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSL
Sbjct: 1 IGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSL 60
Query: 91 LLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGP 150
LLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS P
Sbjct: 61 LLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSAP 120
Query: 151 IAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAAL 210
IAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAAL
Sbjct: 121 IAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAAL 180
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHF 270
LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHF
Sbjct: 181 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHF 240
Query: 271 FMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWM 330
F+LFVPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWM
Sbjct: 241 FLLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWM 300
Query: 331 AAQDQPHENLIFPEEVLPRGNAL 353
AAQDQPHENLIFPEEVLPRGNAL
Sbjct: 301 AAQDQPHENLIFPEEVLPRGNAL 323
>gb|AAG26173.1| (AF123819) photosystem II D2 protein [Dioscorea bulbifera]
Length = 321
Score = 673 bits (1718), Expect = 0.0
Identities = 320/321 (99%), Positives = 320/321 (99%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLL 92
WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLL
Sbjct: 1 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLL 60
Query: 93 LWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIA 152
LWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS PIA
Sbjct: 61 LWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSAPIA 120
Query: 153 VFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLC 212
VFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLC
Sbjct: 121 VFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLC 180
Query: 213 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 272
AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM
Sbjct: 181 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 240
Query: 273 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAA 332
LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAA
Sbjct: 241 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAA 300
Query: 333 QDQPHENLIFPEEVLPRGNAL 353
QDQPHENLIFPEEVLPRGNAL
Sbjct: 301 QDQPHENLIFPEEVLPRGNAL 321
>gi|11467390 D2 protein of the photosystem II reaction center core heterodimer
[Cyanophora paradoxa]
sp|P48079|PSBD_CYAPA PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||T06935 photosystem II protein D2 - Cyanophora paradoxa cyanelle
gb|AAA81278.1| (U30821) D2 protein of the photosystem II reaction center core
heterodimer [Cyanophora paradoxa]
Length = 352
Score = 670 bits (1711), Expect = 0.0
Identities = 309/353 (87%), Positives = 332/353 (93%), Gaps = 1/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MT+A+G+ + E FD++DDWL+RDRFVF+GWSGLLL PCAY A+G WFTGTTFVTSWY
Sbjct: 1 MTVAIGR-SDSERGWFDVLDDWLKRDRFVFLGWSGLLLLPCAYLAVGAWFTGTTFVTSWY 59
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANS+ HS+L +WGPEAQGDFTRWCQ+GGLWTF ALHGA
Sbjct: 60 THGLASSYLEGCNFLTAAVSTPANSMGHSILFVWGPEAQGDFTRWCQIGGLWTFTALHGA 119
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
GLIGF LRQFE+AR + LRPYNAIAFSGPIAVFVSVFL+YPLGQ+GWFFAPSFGVAAIF
Sbjct: 120 LGLIGFTLRQFEIARLIGLRPYNAIAFSGPIAVFVSVFLLYPLGQAGWFFAPSFGVAAIF 179
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RF+LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDG+NTF AFNPTQ
Sbjct: 180 RFLLFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGSNTFPAFNPTQ 239
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA+GVVGL +NLRAYDFV
Sbjct: 240 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLGVNLRAYDFV 299
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKN+LLNEGIRAWMA QDQPHEN +F EEVLPRGNAL
Sbjct: 300 SQEIRAAEDPEFETFYTKNLLLNEGIRAWMAVQDQPHENFVFSEEVLPRGNAL 352
>gi|11467543 PSII, D2 reaction-center protein [Odontella sinensis]
sp|P49478|PSBD_ODOSI PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||S78348 photosystem II protein D2 - Odontella sinensis chloroplast
emb|CAA91721.1| (Z67753) PSII, D2 reaction-center protein [Odontella sinensis]
Length = 351
Score = 670 bits (1709), Expect = 0.0
Identities = 310/353 (87%), Positives = 331/353 (92%), Gaps = 2/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ E LFD++DDWL++DRFVF+GWSGLLLFP AY A GGW TGTTFVTSWY
Sbjct: 1 MTIAIGQ--NQERGLFDLIDDWLKKDRFVFIGWSGLLLFPTAYLAAGGWMTGTTFVTSWY 58
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANS+ HSLLLLWGPEAQGDFTRWCQ+GGLW F+ALHGA
Sbjct: 59 THGLASSYLEGCNFLTAAVSTPANSMGHSLLLLWGPEAQGDFTRWCQIGGLWAFIALHGA 118
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGF LRQFE+AR V +RPYNAIAFSGPIAVFVSVFL+YPLGQ+ WFFAPSFGVAAIF
Sbjct: 119 FGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLLYPLGQASWFFAPSFGVAAIF 178
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQ
Sbjct: 179 RFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQ 238
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
+EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SA+G+VGLALNLRAYDFV
Sbjct: 239 SEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFV 298
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQE+RAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHEN +FPEEVLPRGNAL
Sbjct: 299 SQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 351
>gb|AAG26175.1| (AF123820) photosystem II D2 protein [Drimys winteri]
Length = 319
Score = 669 bits (1707), Expect = 0.0
Identities = 318/319 (99%), Positives = 319/319 (99%)
Query: 35 GLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLW 94
GLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLW
Sbjct: 1 GLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLW 60
Query: 95 GPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVF 154
GPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVF
Sbjct: 61 GPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVF 120
Query: 155 VSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAI 214
VSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAI
Sbjct: 121 VSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAI 180
Query: 215 HGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLF 274
HGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLF
Sbjct: 181 HGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLF 240
Query: 275 VPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQD 334
VPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQD
Sbjct: 241 VPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQD 300
Query: 335 QPHENLIFPEEVLPRGNAL 353
QPHENLIFPEEVLPRGNAL
Sbjct: 301 QPHENLIFPEEVLPRGNAL 319
>sp|P28253|PSBD_CYACA PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||F2KKD2 photosystem II protein D2 - red alga (Cyanidium caldarium)
chloroplast
emb|CAA44459.1| (X62578) D2 protein of PSII [Cyanidium caldarium]
Length = 351
Score = 664 bits (1695), Expect = 0.0
Identities = 306/353 (86%), Positives = 330/353 (92%), Gaps = 2/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+ + + LFD++DDWL+RDRFVF+GWSGLLLFPC+Y ALG WFTGTTFVTSWY
Sbjct: 1 MTIAIER--NIQRGLFDLVDDWLKRDRFVFIGWSGLLLFPCSYLALGAWFTGTTFVTSWY 58
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVS+PANS+ HSLL LWGPEAQGDFTRWCQ+GGLWTF ALHGA
Sbjct: 59 THGLASSYLEGCNFLTAAVSSPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWTFTALHGA 118
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGF LRQFE+AR V +RPYNAIAFSGPIAVFVSVFLIYPLGQ+ WFFAPSFGVAAIF
Sbjct: 119 FGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLIYPLGQASWFFAPSFGVAAIF 178
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDG+ ANTFRAF PTQ
Sbjct: 179 RFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEAANTFRAFTPTQ 238
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
+EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW S++G++GLALNLRAYDFV
Sbjct: 239 SEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSIGIIGLALNLRAYDFV 298
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQE+RAAEDPEFETFYTKN+LLNEGIRAWMA QDQPHEN +FPEEVLPRGNAL
Sbjct: 299 SQELRAAEDPEFETFYTKNLLLNEGIRAWMATQDQPHENFVFPEEVLPRGNAL 351
>gi|11465589 unknown; Photosystem II D2 protein [Cyanidium caldarium]
gb|AAF13026.1|AF022186_200 (AF022186) unknown; Photosystem II D2 protein [Cyanidium caldarium]
Length = 351
Score = 664 bits (1694), Expect = 0.0
Identities = 304/353 (86%), Positives = 333/353 (94%), Gaps = 2/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ + E FD++DDWL+RDRFVF+GWSG+LLFPCAY ALG WFTGTTFV+SWY
Sbjct: 1 MTIAIGR--EQERGWFDLLDDWLKRDRFVFIGWSGILLFPCAYLALGAWFTGTTFVSSWY 58
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVS+PANS+ HSLL LWGPEAQGDFTRWCQ+GGLWTF ALHG+
Sbjct: 59 THGLASSYLEGCNFLTAAVSSPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWTFTALHGS 118
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGF LRQFE+AR V LRPYNAIAFSGPIAVFVSVFL+YPLGQ+ WFFAPSFGVAAIF
Sbjct: 119 FGLIGFCLRQFEIARLVGLRPYNAIAFSGPIAVFVSVFLLYPLGQASWFFAPSFGVAAIF 178
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDG+ ++TFRAF PTQ
Sbjct: 179 RFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEASDTFRAFTPTQ 238
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
+EETYSMVTANRFWSQIFGVAF+NKRWLHFF+LFVPVTGLW+S++G+VGLALNLRAYDFV
Sbjct: 239 SEETYSMVTANRFWSQIFGVAFANKRWLHFFLLFVPVTGLWVSSIGIVGLALNLRAYDFV 298
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHEN +FPEEVLPRGNAL
Sbjct: 299 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 351
>gi|11465823 Photosystem II D2 protein [Porphyra purpurea]
sp|P51357|PSBD_PORPU PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||S73278 photosystem II protein D2 - red alga (Porphyra purpurea)
chloroplast
gb|AAC08243.1| (U38804) Photosystem II D2 protein [Porphyra purpurea]
Length = 351
Score = 661 bits (1687), Expect = 0.0
Identities = 307/353 (86%), Positives = 329/353 (92%), Gaps = 2/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ + FD++DDWL+RDRFVFVGWSGLLLFPCAY A+GGW TGTTFVTSWY
Sbjct: 1 MTIAIGQ--EKTRGGFDLVDDWLKRDRFVFVGWSGLLLFPCAYLAVGGWLTGTTFVTSWY 58
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLTAAVSTPANS+ HSLL LWGPEAQGDFTRWCQ+GGLW F+ALHG+
Sbjct: 59 THGLASSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWAFIALHGS 118
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGF LRQFE+AR V LRPYNAIAFSGPIAVFVSVFL+YPLGQ+ WFFAPS GVAAIF
Sbjct: 119 FGLIGFCLRQFEIARLVGLRPYNAIAFSGPIAVFVSVFLMYPLGQASWFFAPSLGVAAIF 178
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATV+NTLFEDGD A+TFRAF PTQ
Sbjct: 179 RFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQ 238
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
+EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SA G+VGLALNLRAYDFV
Sbjct: 239 SEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAFGIVGLALNLRAYDFV 298
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQE+RAAEDPEFETFYTKNILLNEGIR+WMAAQDQPHEN IFPEEVLPRGNAL
Sbjct: 299 SQELRAAEDPEFETFYTKNILLNEGIRSWMAAQDQPHENFIFPEEVLPRGNAL 351
>pir||S42646 photosystem II protein D2 - Anabaena sp. (strain PCC 7120)
Length = 351
Score = 655 bits (1672), Expect = 0.0
Identities = 305/353 (86%), Positives = 327/353 (92%), Gaps = 2/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ FD++DDWL+RDRFVFVGWSG+LLFPCA+ ALGGW TGTTFVTSWY
Sbjct: 1 MTIAVGR--APSRGWFDVLDDWLKRDRFVFVGWSGILLFPCAFLALGGWLTGTTFVTSWY 58
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEG NFLT AVS+PA+S+ HSLLLLWGPEAQGD TRW QLGGLW FVALHGA
Sbjct: 59 THGLASSYLEGANFLTVAVSSPADSMGHSLLLLWGPEAQGDLTRWFQLGGLWPFVALHGA 118
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFE+AR V +RPYNA+AFS PIAVFVSVFL+YPLGQS WFFAPSFGVAAIF
Sbjct: 119 FGLIGFMLRQFEIARLVGIRPYNALAFSAPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIF 178
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RF+LF QGFHNWTLNPFHMMGVAGVLG ALLCAIHGATVENTLFEDG+GANTFRAFNPTQ
Sbjct: 179 RFLLFLQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGEGANTFRAFNPTQ 238
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
+EETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLWMSA+G+VGLALNLRAYDFV
Sbjct: 239 SEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAVGIVGLALNLRAYDFV 298
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQE+RAAEDPEFETFYTKNILLNEGIR WMA QDQPHE +FPEEVLPRGNAL
Sbjct: 299 SQELRAAEDPEFETFYTKNILLNEGIRGWMAPQDQPHEKFVFPEEVLPRGNAL 351
>gi|11467626 PSII D2 reaction-center protein [Guillardia theta]
sp|O78427|PSBD_GUITH PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
gb|AAC35612.1| (AF041468) PSII D2 reaction-center protein [Guillardia theta]
Length = 351
Score = 652 bits (1665), Expect = 0.0
Identities = 299/353 (84%), Positives = 330/353 (92%), Gaps = 2/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ ++ FD++DDWL+RDRFVF+GWSGLLLFP +Y ++GGWFTGTTFVTSWY
Sbjct: 1 MTIAIGQ--EEGRGWFDLVDDWLKRDRFVFIGWSGLLLFPTSYLSIGGWFTGTTFVTSWY 58
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNF TAAVSTPANS+ HSLLLLWGPEAQGDFTRWCQ+GGLW F ALHGA
Sbjct: 59 THGLASSYLEGCNFFTAAVSTPANSMGHSLLLLWGPEAQGDFTRWCQIGGLWAFCALHGA 118
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGF LRQFE+AR V +RPYNAIAFSGPIA+FVSVFL+YPLGQ+ WFFAPS GVAAIF
Sbjct: 119 FGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAIFVSVFLMYPLGQASWFFAPSLGVAAIF 178
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RF+LF QGFHN+TLNPFHMMGVAG+LGAALLCAIHGATV+NT+FEDGD ANTFRAF PTQ
Sbjct: 179 RFLLFIQGFHNFTLNPFHMMGVAGILGAALLCAIHGATVQNTIFEDGDAANTFRAFTPTQ 238
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
+EETYSMVTANRFWSQ+FGVAFSNKRWLHFFMLFVP+ GLW SA+G+VGLALNLRAYDFV
Sbjct: 239 SEETYSMVTANRFWSQVFGVAFSNKRWLHFFMLFVPLAGLWTSAIGIVGLALNLRAYDFV 298
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQE+RAAEDPEFETFYTKN+LLNEGIR+WMAAQDQPHEN IFPEEVLPRGNAL
Sbjct: 299 SQELRAAEDPEFETFYTKNLLLNEGIRSWMAAQDQPHENFIFPEEVLPRGNAL 351
>sp|P20898|PSBD_SYNP2 PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
gb|AAA79119.1| (M29659) photosystem II reaction center D2 protein [Synechococcus
sp.]
gb|AAB61354.1| (U36390) D2 protein of photosystem II [Synechococcus sp. PCC 7002]
prf||1707315A photosystem II D2 protein [Synechococcus sp.]
Length = 352
Score = 652 bits (1664), Expect = 0.0
Identities = 304/353 (86%), Positives = 325/353 (91%), Gaps = 1/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ E FD++DDWL+RDRFVFVGWSG+LLFPCA+ ALGGW TGTTFVTSWY
Sbjct: 1 MTIAVGR-APQERGWFDVLDDWLKRDRFVFVGWSGILLFPCAFMALGGWLTGTTFVTSWY 59
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEGCNFLT AVS+PA+SL HSLL LWGPEA +F RWCQLGGLW+FVALHGA
Sbjct: 60 THGLASSYLEGCNFLTVAVSSPADSLGHSLLFLWGPEANWNFARWCQLGGLWSFVALHGA 119
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFE+AR V +RPYNAIAFSGPIAVFVSVFL+YPLGQS WFFAPSFGVA IF
Sbjct: 120 FGLIGFMLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLMYPLGQSSWFFAPSFGVAGIF 179
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFED D ANTFRAF PTQ
Sbjct: 180 RFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDSDQANTFRAFEPTQ 239
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLWMS++G+VGLALNLRAYDFV
Sbjct: 240 AEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSVGIVGLALNLRAYDFV 299
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEG+RAWMA QDQ HE +FPEEVLPRGNAL
Sbjct: 300 SQEIRAAEDPEFETFYTKNILLNEGMRAWMAPQDQIHEQFVFPEEVLPRGNAL 352
>sp|P51766|PSBD_PROHO PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
gb|AAA82944.1| (U40144) D2 [Prochlorothrix hollandica]
Length = 351
Score = 652 bits (1663), Expect = 0.0
Identities = 303/353 (85%), Positives = 324/353 (90%), Gaps = 2/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MT A+G+ + + FD++DDWL+RDRFVFVGWSGLLLFPCAY A+GGW TGTTF TSWY
Sbjct: 1 MTTAVGRIS--DRGWFDVLDDWLKRDRFVFVGWSGLLLFPCAYMAIGGWLTGTTFATSWY 58
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THG+ASSYLEGCNFLT A+STPA+S+ H+LLLLWGPEAQG F RW QLGGLWTF ALHGA
Sbjct: 59 THGIASSYLEGCNFLTVAISTPADSMGHALLLLWGPEAQGAFVRWVQLGGLWTFTALHGA 118
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFE+AR V +RPYNAIAFS PIA+FVSVFLIYPLGQS WFFAPSFGVAAIF
Sbjct: 119 FALIGFMLRQFEIARLVGVRPYNAIAFSAPIALFVSVFLIYPLGQSSWFFAPSFGVAAIF 178
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILFFQGFHNWTLNPFHMMGVAGVLG ALLCAIHGATVENTLFEDGD A TFR F PTQ
Sbjct: 179 RFILFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGDDATTFRGFEPTQ 238
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
+EETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPV GLWMSA+GVVGLALNLR+YDFV
Sbjct: 239 SEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGLWMSAIGVVGLALNLRSYDFV 298
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQEIRAAEDPEFETFYTKNILLNEG+RAWMA QDQPHEN IFPEEVLPRGNAL
Sbjct: 299 SQEIRAAEDPEFETFYTKNILLNEGLRAWMAPQDQPHENFIFPEEVLPRGNAL 351
>sp|P11005|PSBD_SYNP7 PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||JT0321 photosystem II protein D2 - Synechococcus sp. (strain PCC 7942)
gb|AAA27357.1| (M20815) D2 thylakoid protein [Synechococcus sp.]
gb|AAA27358.1| (M20814) psbDI thylakoid protein [Synechococcus sp.]
Length = 352
Score = 651 bits (1661), Expect = 0.0
Identities = 302/353 (85%), Positives = 326/353 (91%), Gaps = 1/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ E FD++DDWL+RDRFVFVGWSGLLLFPCAY ALGGW TGT+FVTSWY
Sbjct: 1 MTIAVGR-APAERGWFDVLDDWLKRDRFVFVGWSGLLLFPCAYLALGGWLTGTSFVTSWY 59
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THG+ASSYLEG NFLT AVSTPA++ HSL+LLWGPEAQG+F RWCQLGGLW FVALHGA
Sbjct: 60 THGIASSYLEGGNFLTVAVSTPADAFGHSLMLLWGPEAQGNFVRWCQLGGLWNFVALHGA 119
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
F LIGFMLRQFE+AR V +RPYNAIAFSGPIAVFVSVFL+YPLGQS WFFAPSFGVAAIF
Sbjct: 120 FALIGFMLRQFEIARLVGVRPYNAIAFSGPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIF 179
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFED + +NTFRAF PTQ
Sbjct: 180 RFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDSEQSNTFRAFEPTQ 239
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLWMS++G+VGLALNLRAYDFV
Sbjct: 240 AEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLALNLRAYDFV 299
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQE+RAAEDPEFETFYTKNILLNEGIRAWMA QDQPHE +FPEEVLPRGNAL
Sbjct: 300 SQELRAAEDPEFETFYTKNILLNEGIRAWMAPQDQPHEKFVFPEEVLPRGNAL 352
>sp|P09192|PSBD_SYNY3 PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||PS0097 photosystem II protein D2 - Synechocystis sp. (strain PCC 6803)
dbj|BAA10851.1| (D64006) photosystem II D2 protein [Synechocystis sp.]
gb|AAA85377.1| (M21538) psbD gene product [Synechocystis sp.]
dbj|BAA17800.1| (D90909) photosystem II D2 protein [Synechocystis sp.]
Length = 352
Score = 649 bits (1655), Expect = 0.0
Identities = 301/353 (85%), Positives = 326/353 (92%), Gaps = 1/353 (0%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ E FD++DDWL+RDRFVF+GWSGLLLFPCA+ ALGGW TGTTFVTSWY
Sbjct: 1 MTIAVGR-APVERGWFDVLDDWLKRDRFVFIGWSGLLLFPCAFMALGGWLTGTTFVTSWY 59
Query: 61 THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120
THGLASSYLEG NFLT AVS+PA++ HSLL LWGPEAQG+ TRW Q+GGLW FVALHGA
Sbjct: 60 THGLASSYLEGANFLTVAVSSPADAFGHSLLFLWGPEAQGNLTRWFQIGGLWPFVALHGA 119
Query: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIF 180
FGLIGFMLRQFE++R V +RPYNAIAFSGPIAVFVSVFL+YPLGQS WFFAPSFGVA IF
Sbjct: 120 FGLIGFMLRQFEISRLVGIRPYNAIAFSGPIAVFVSVFLMYPLGQSSWFFAPSFGVAGIF 179
Query: 181 RFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
RFILF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDG+ +NTFRAF PTQ
Sbjct: 180 RFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEDSNTFRAFEPTQ 239
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFV 300
AEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLWMS++G+VGLALNLRAYDFV
Sbjct: 240 AEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSVGIVGLALNLRAYDFV 299
Query: 301 SQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
SQE+RAAEDPEFETFYTKNILLNEG+RAWMA QDQPHEN IFPEEVLPRGNAL
Sbjct: 300 SQELRAAEDPEFETFYTKNILLNEGMRAWMAPQDQPHENFIFPEEVLPRGNAL 352
>gi|11466982 PSII D2-polypeptide [Euglena gracilis]
sp|P31557|PSBD_EUGGR PHOTOSYSTEM II D2 PROTEIN (PHOTOSYSTEM Q(A) PROTEIN)
pir||S34495 photosystem II protein D2 - Euglena gracilis chloroplast
emb|CAA50076.1| (X70810) PSII D2-polypeptide [Euglena gracilis]
Length = 352
Score = 648 bits (1654), Expect = 0.0
Identities = 302/345 (87%), Positives = 324/345 (93%)
Query: 9 TKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSY 68
T+++N FD+ DDWL++DRF+F+GWSGLLLFPC+Y ALGGW TG TFVTSWYTHGLASS+
Sbjct: 8 TENKNGWFDVADDWLKKDRFIFIGWSGLLLFPCSYLALGGWLTGITFVTSWYTHGLASSF 67
Query: 69 LEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFML 128
LEGCN LTAAVSTP NS+ HSLLLL G EAQ DFTRW Q+GGLW F+ALHGAFGLIGFML
Sbjct: 68 LEGCNALTAAVSTPPNSMGHSLLLLLGSEAQWDFTRWLQIGGLWPFIALHGAFGLIGFML 127
Query: 129 RQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQG 188
RQFE+A++VQ+RPYNAIAFS PI+VFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQG
Sbjct: 128 RQFEIAKAVQIRPYNAIAFSAPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQG 187
Query: 189 FHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMV 248
FHNWTLNPFHMMGVAGVLGAALLCAIHGATVENT+FEDGD NTFRAFNP Q+EETYSMV
Sbjct: 188 FHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTIFEDGDSPNTFRAFNPLQSEETYSMV 247
Query: 249 TANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAE 308
TANRFWSQIFGVAFSNKRWLHFFM+FVPVTGL MSALG+VGLALNLRAYDFVSQEIRAAE
Sbjct: 248 TANRFWSQIFGVAFSNKRWLHFFMVFVPVTGLRMSALGIVGLALNLRAYDFVSQEIRAAE 307
Query: 309 DPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL 353
DPEFETFYTKNILLNEGIRAWMAAQDQPHE IFPEEVLPRGNAL
Sbjct: 308 DPEFETFYTKNILLNEGIRAWMAAQDQPHEQFIFPEEVLPRGNAL 352
>dbj|BAA83443.1| (AB013667) photosystem II protein D2 [Anthoceros punctatus]
Length = 314
Score = 617 bits (1575), Expect = e-176
Identities = 297/314 (94%), Positives = 301/314 (95%)
Query: 25 RDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
RDRFVFVGWSGLLLFPCAYFALGGWFTGTTFV+S YTHGLASSYLEGCNFLTAAVST N
Sbjct: 1 RDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVSSRYTHGLASSYLEGCNFLTAAVSTSVN 60
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
SLAH LLLLWGPEAQGDFT WCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLR YNA
Sbjct: 61 SLAHFLLLLWGPEAQGDFTCWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRLYNA 120
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
IAFSGPIAVFVSVFLIYPLGQSGWFFA SFGVAAI RFILFFQGFHNWTLN FHMMGVAG
Sbjct: 121 IAFSGPIAVFVSVFLIYPLGQSGWFFALSFGVAAISRFILFFQGFHNWTLNLFHMMGVAG 180
Query: 205 VLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSN 264
VLG ALLC I+GATVENTLFEDGDGANTFRAFNPTQ+EETYSMVTANRFWSQIFGVAF N
Sbjct: 181 VLGVALLCVIYGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFPN 240
Query: 265 KRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNE 324
KRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPE ETFYTKNILLNE
Sbjct: 241 KRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPESETFYTKNILLNE 300
Query: 325 GIRAWMAAQDQPHE 338
GIRAWMAAQDQPHE
Sbjct: 301 GIRAWMAAQDQPHE 314
>dbj|BAA83458.1| (AB013682) photosystem II protein D2 [Adiantum capillus-veneris]
Length = 299
Score = 611 bits (1559), Expect = e-174
Identities = 290/299 (96%), Positives = 294/299 (97%)
Query: 24 RRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPA 83
RRDRFVFVGWSGLLLFP AYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPA
Sbjct: 1 RRDRFVFVGWSGLLLFPTAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPA 60
Query: 84 NSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYN 143
NSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHG+F LIGFMLRQFELARSVQLRPYN
Sbjct: 61 NSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGSFALIGFMLRQFELARSVQLRPYN 120
Query: 144 AIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVA 203
A+AFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVA
Sbjct: 121 AVAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVA 180
Query: 204 GVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 263
GVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ+EETYSMVTANRFWSQIFGVAFS
Sbjct: 181 GVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFS 240
Query: 264 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILL 322
NKRWLHFFMLFVPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETFYT LL
Sbjct: 241 NKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTXFXLL 299
>dbj|BAA83431.1| (AB013655) photosystem II protein D2 [Physcomitrella patens]
Length = 290
Score = 606 bits (1545), Expect = e-172
Identities = 286/290 (98%), Positives = 289/290 (99%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH 88
VFVGWSGLLLFPCAYF+LGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH
Sbjct: 1 VFVGWSGLLLFPCAYFSLGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH 60
Query: 89 SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS 148
SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAF LIGFMLRQFELARSVQLRPYNAIAFS
Sbjct: 61 SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFALIGFMLRQFELARSVQLRPYNAIAFS 120
Query: 149 GPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA 208
GPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA
Sbjct: 121 GPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA 180
Query: 209 ALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWL 268
ALLCAIHGATVENTLFEDGDGANTFRAFNPTQ+EETYSMVTANRFWSQIFGVAFSNKRWL
Sbjct: 181 ALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRWL 240
Query: 269 HFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTK 318
HFFMLFVPVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETFYTK
Sbjct: 241 HFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTK 290
>dbj|BAA83448.1| (AB013672) photosystem II protein D2 [Sphagnum fallax]
Length = 278
Score = 577 bits (1471), Expect = e-164
Identities = 273/278 (98%), Positives = 276/278 (99%)
Query: 37 LLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGP 96
LLFPCAYF+LGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGP
Sbjct: 1 LLFPCAYFSLGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGP 60
Query: 97 EAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVS 156
EAQGDFTRWCQLGGLWTFVALHGAF LIGFMLRQFELARSVQLRPYNAIAFS PIAVFVS
Sbjct: 61 EAQGDFTRWCQLGGLWTFVALHGAFALIGFMLRQFELARSVQLRPYNAIAFSAPIAVFVS 120
Query: 157 VFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHG 216
VFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHG
Sbjct: 121 VFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHG 180
Query: 217 ATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVP 276
ATVENTLFEDGDGANTFRAFNPTQ+EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVP
Sbjct: 181 ATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVP 240
Query: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFET 314
VTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFET
Sbjct: 241 VTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFET 278
>dbj|BAA83453.1| (AB013677) photosystem II protein D2 [Haplomitrium mnioides]
Length = 280
Score = 568 bits (1449), Expect = e-161
Identities = 272/280 (97%), Positives = 275/280 (98%)
Query: 36 LLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95
LLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCN LTAAVSTPANSLAHSLLLLWG
Sbjct: 1 LLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNSLTAAVSTPANSLAHSLLLLWG 60
Query: 96 PEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFV 155
PEAQGDFTRWCQLGGLWTFVALHGAFGLIGFM RQFELARSVQLRPYNAIAFSGPIAVFV
Sbjct: 61 PEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMPRQFELARSVQLRPYNAIAFSGPIAVFV 120
Query: 156 SVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIH 215
SVF I+PLGQSGWFFAPSFGVAAIFRFILF QGFHNWTLNPFHMMGVAGVLGAALLCAIH
Sbjct: 121 SVFPIHPLGQSGWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGVLGAALLCAIH 180
Query: 216 GATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFV 275
GATVENTLFEDGDGANTFRAFNPTQ+EETYSMVTANRF SQIFGVAFSNKRWLHFFMLFV
Sbjct: 181 GATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFRSQIFGVAFSNKRWLHFFMLFV 240
Query: 276 PVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETF 315
PVTGLWMSA+GVVGLALNLRAYDFVSQEIRAAEDPEFETF
Sbjct: 241 PVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETF 280
>emb|CAA30070.1| (X07018) psbD gene product (123 AA) [Synechocystis PCC6803]
Length = 123
Score = 246 bits (622), Expect = 3e-64
Identities = 114/123 (92%), Positives = 120/123 (96%)
Query: 231 NTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGL 290
NTFRAF PTQAEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLWMS++G+VGL
Sbjct: 1 NTFRAFEPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSVGIVGL 60
Query: 291 ALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRG 350
ALNLRAYDFVSQE+RAAEDPEFETFYTKNILLNEG+RAWMA QDQPHEN IFPEEVLPRG
Sbjct: 61 ALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGMRAWMAPQDQPHENFIFPEEVLPRG 120
Query: 351 NAL 353
NAL
Sbjct: 121 NAL 123
>gi|11465541 unknown; Photosystem II Q(b) protein (D1) [Cyanidium caldarium]
pir||T11963 Photosystem II Q(b) protein (D1) - red alga (Cyanidium caldarium)
chloroplast
gb|AAB82694.1| (AF022186) unknown; Photosystem II Q(b) protein (D1) [Cyanidium
caldarium]
Length = 360
Score = 174 bits (437), Expect = 1e-42
Identities = 99/313 (31%), Positives = 166/313 (52%), Gaps = 25/313 (7%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSW 59
MT+ L + ++ L++ W+ + +++GW G+L+ PC A T F+ ++
Sbjct: 1 MTVTLER--RESTSLWERFCSWITSTENRLYIGWFGVLMIPCLLTAT------TVFIIAF 52
Query: 60 YT----------HGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLG 109
++ S L G N +T AV +N++ L +W W G
Sbjct: 53 IAAPPVDIDGIREPVSGSLLYGNNIITGAVVPTSNAIGLHLYPIW---EAASLDEWLYNG 109
Query: 110 GLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWF 169
G + V LH G+ +M R++EL+ + +RP+ +AFS P+A +VFLIYP+GQ +
Sbjct: 110 GPYQLVVLHFLLGVAAYMGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFS 169
Query: 170 FAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGD 228
G++ F F+L FQ HN ++PFHM GVAGV G AL A+HG+ V ++L E +
Sbjct: 170 DGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGALFSAMHGSLVTSSLIRETTE 229
Query: 229 GANTFRAFNPTQAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALG 286
+ + Q EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W++++G
Sbjct: 230 NESPNYGYKLGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVVGIWLTSIG 289
Query: 287 VVGLALNLRAYDF 299
+ +A NL +F
Sbjct: 290 ISTMAFNLNGLNF 302
>gb|AAF89980.1|AF206706_2 (AF206706) PSII D1 reaction center protein [Heterocapsa rotundata]
Length = 348
Score = 172 bits (432), Expect = 5e-42
Identities = 96/278 (34%), Positives = 153/278 (54%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+FP A + F G+ A + L G N ++ AV +N
Sbjct: 32 LYIGWFGILMFPLISLATVAYIAAFIFAPPVDIDGIREPVAGALLYGNNIISGAVIPSSN 91
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W EA G F W GG + FV LH FG +M R++E A + +RP+
Sbjct: 92 AIGVHFYPVW--EALG-FDEWLYNGGTYQFVVLHFIFGAGAWMGREWEFAFRLGMRPWIF 148
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+ +VF++YP+GQ + G++ F F+L FQ HN ++PFH++GVAG
Sbjct: 149 VAFSAPLVASCAVFVVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHILGVAG 208
Query: 205 VLGAALLCAIHGATVENTLFEDGDGANTFR-AFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L + G + +N Q +ETYS+ A+ ++ ++ +
Sbjct: 209 VFGGSLFSAMHGSLVTSSLLAETAGDLSLNVGYNFGQEDETYSISAAHGYFGRLIFQYAS 268
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALGV +A NL +F
Sbjct: 269 FNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGLNF 306
>dbj|BAA83813.1| (AB025586) psbA [Amphidinium carterae]
Length = 340
Score = 172 bits (432), Expect = 5e-42
Identities = 96/279 (34%), Positives = 156/279 (55%), Gaps = 12/279 (4%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW GLL+FP A + T + G+ A S + G N ++ AV +N
Sbjct: 24 LYIGWFGLLVFPLLSLATVAYITAFFLAPAVDIDGIREPVAGSLIYGNNIISGAVVPSSN 83
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ LW E+ G W GG + FV LH G+ G+M R++E + + +RP+
Sbjct: 84 AIGVHFYPLW--ESLG-LDEWLYNGGTYQFVVLHFFIGVCGWMGREWEFSYRLGMRPWIF 140
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS PIA +VF++YP+GQ + G+ F F+L FQ H ++PFH++GVAG
Sbjct: 141 VAFSAPIAAAAAVFIVYPIGQGSFSDGMPLGIQGTFNFMLVFQAEHKILMHPFHILGVAG 200
Query: 205 VLGAALLCAIHGATVENTLFEDGDGANTF-RAFNPTQAEETYSMVTANRFWSQI---FGV 260
V G +L A+HG+ V ++L + G+ + + Q +ETYS+ A+ ++ ++ +G
Sbjct: 201 VFGGSLFSAMHGSLVSSSLLAETAGSESLNNGYVFGQEDETYSISAAHAYFGRLIFQYG- 259
Query: 261 AFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALGV +A NL ++F
Sbjct: 260 SFNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNF 298
>gb|AAF31417.1|AF206672_1 (AF206672) photosystem II protein D1 [Amphidinium carterae]
emb|CAB75842.1| (AJ250262) photosystem II D1 protein [Amphidinium operculatum]
gb|AAF89982.1|AF206708_1 (AF206708) PSII D1 reaction center protein [Amphidinium carterae]
Length = 340
Score = 171 bits (429), Expect = 1e-41
Identities = 94/278 (33%), Positives = 153/278 (54%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW GLL+FP A + T + G+ A S + G N ++ AV +N
Sbjct: 24 LYIGWFGLLVFPLLSLATVAYITAFFLAPAVDIDGIREPVAGSLIYGNNIISGAVIPSSN 83
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ LW E+ G W GG + FV H G+ G+M R++E + + +RP+
Sbjct: 84 AIGVHFYPLW--ESLG-LDEWLYNGGTYQFVVFHFFLGVCGWMGREWEFSYRLGMRPWIF 140
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS PIA +VF+IYP+GQ + G+ F F+L FQ H ++PFH++GVAG
Sbjct: 141 VAFSAPIAAAAAVFIIYPIGQGSFSDGMPLGIQGTFNFMLVFQAEHKILMHPFHILGVAG 200
Query: 205 VLGAALLCAIHGATVENTLFEDGDGANTF-RAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L + G+ + + Q +ETYS+ A+ ++ ++ +
Sbjct: 201 VFGGSLFSAMHGSLVSSSLLAETAGSESLNNGYVFGQEDETYSISAAHAYFGRLIFQYAS 260
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W ++LGV +A NL ++F
Sbjct: 261 FNNSRSLHFFLAAWPVIGIWFTSLGVATMAFNLNGFNF 298
>dbj|BAA83815.1| (AB025588) psbA [Gonyaulax polyedra]
Length = 345
Score = 171 bits (428), Expect = 2e-41
Identities = 95/277 (34%), Positives = 153/277 (54%), Gaps = 10/277 (3%)
Query: 30 FVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPANS 85
++GW G+L+FP A+ + + F G+ A S L G N +T AV +N+
Sbjct: 30 YIGWFGILMFPLIGLAIVAYISAFIFAPPVDIDGIREPVAGSLLYGNNIITGAVVPSSNA 89
Query: 86 LAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAI 145
+ +W E+ G F W GG + FV LH G+ +M R++E + + +RP+ +
Sbjct: 90 IGVHFYPVW--ESLG-FDEWLYNGGTYQFVVLHFIVGVSCWMGREWEFSFRLGMRPWIFV 146
Query: 146 AFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGV 205
AFS P+ +VF+ YP+GQ + G++ F F+L FQ HN ++PFH++GVAGV
Sbjct: 147 AFSAPLVAASAVFVFYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHILGVAGV 206
Query: 206 LGAALLCAIHGATVENTLFEDGDGANTFR-AFNPTQAEETYSMVTANRFWSQIF--GVAF 262
G +L A+HG+ V ++L + G + +N Q +ETYS+ A+ ++ ++ +F
Sbjct: 207 FGGSLFSAMHGSLVSSSLLAETSGDVSLNVGYNFGQEDETYSISAAHGYFGRLIFQYASF 266
Query: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+N R LHFF+ PV G+W +ALGV +A NL +F
Sbjct: 267 NNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGLNF 303
>gb|AAF25668.1|AF209094_1 (AF209094) photosystem II D2 protein [Sinapis alba]
Length = 78
Score = 170 bits (427), Expect = 2e-41
Identities = 77/78 (98%), Positives = 77/78 (98%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIALGKFTKDE DLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY
Sbjct: 1 MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
Query: 61 THGLASSYLEGCNFLTAA 78
THGLASSYLEGCNFLTAA
Sbjct: 61 THGLASSYLEGCNFLTAA 78
>gi|11467479 PSII, D1 reaction-center protein [Odontella sinensis]
sp|P49460|PSBA_ODOSI PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S78284 photosystem II protein D1 - Odontella sinensis chloroplast
emb|CAA91657.1| (Z67753) PSII, D1 reaction-center protein [Odontella sinensis]
Length = 360
Score = 170 bits (426), Expect = 3e-41
Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G L+FP A + G+ A S L G N ++ AV +N
Sbjct: 28 LYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + + LH G+ +M R++EL+ + +RP+
Sbjct: 88 AIGMHFYPIW---EAASIDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIF 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+A +VFL+YP+GQ + G++ F F+L FQ HN ++PFHM GVAG
Sbjct: 145 VAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAG 204
Query: 205 VLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L E + +T + Q EETY++V A+ ++ ++ +
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W++A+GV +A NL ++F
Sbjct: 265 FNNSRALHFFLAAWPVVGIWLTAMGVSTMAFNLNGFNF 302
>gb|AAF37850.1|AF227740_1 (AF227740) photosystem II subunit core 32 kD protein D1 [Vaucheria
litorea]
Length = 360
Score = 169 bits (423), Expect = 6e-41
Identities = 95/298 (31%), Positives = 160/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L++ W+ D +++GW G+L+ P A + G+
Sbjct: 8 RESISLWERFCSWITSTDNRLYIGWFGVLMIPTLLTATTCYIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
A S L G N ++ AV +N++ +W + + W GG + + LH G+
Sbjct: 68 AGSLLYGNNIISGAVIPSSNAIGVHFYPIWEAASVDE---WLYNGGPYQLIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ +AFS P+A +VFL+YP+GQ + G++ F F+L
Sbjct: 125 SYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFML 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM GVAGV G +L A+HG+ V ++L E + +T + Q EE
Sbjct: 185 VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESTNYGYKFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W++ALGV +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNF 302
>gb|AAD44700.1| (AF130033) PSII D1 reaction center protein [Heterocapsa triquetra]
dbj|BAA83814.2| (AB025587) psbA [Heterocapsa triquetra]
Length = 348
Score = 169 bits (423), Expect = 6e-41
Identities = 93/278 (33%), Positives = 152/278 (54%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+FP A + F G+ A + L G N ++ AV +N
Sbjct: 32 LYIGWFGILMFPLLVLATVAYIAAFIFAPPVDIDGIREPVAGALLYGNNIISGAVIPSSN 91
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W EA G F W GG + FV LH FG +M R++E + + +RP+
Sbjct: 92 AIGVHFYPVW--EALG-FDEWLYNGGTYQFVVLHFIFGAGAYMGREWEFSFRLGMRPWIF 148
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+ +VF++YP+GQ + G++ F F+L FQ HN ++PFH++GVA
Sbjct: 149 VAFSAPLVAASAVFIVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHILGVAA 208
Query: 205 VLGAALLCAIHGATVENTLFEDGDGANTFR-AFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L + G + +N Q +ETYS+ A+ ++ ++ +
Sbjct: 209 VFGGSLFSAMHGSLVTSSLLAETAGDLSLNIGYNFGQEDETYSISAAHGYFGRLIFQYAS 268
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W ++LGV +A NL +F
Sbjct: 269 FNNSRSLHFFLAAWPVIGIWFTSLGVSTMAFNLNGLNF 306
>sp|P35877|PSB2_SYNEN PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
dbj|BAA03264.1| (D14325) D1 protein [Synechococcus elongatus]
Length = 360
Score = 169 bits (423), Expect = 6e-41
Identities = 93/294 (31%), Positives = 160/294 (53%), Gaps = 11/294 (3%)
Query: 14 DLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFA----LGGWFTGTTFVTSWYTHGLASSY 68
+L++ DW+ + +++GW G+++ P A + + ++ S
Sbjct: 12 NLWERFCDWITSTENRLYIGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSL 71
Query: 69 LEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFML 128
L G N +TAAV +N++ L +W + + W GG + + H G+ +M
Sbjct: 72 LYGNNIITAAVVPSSNAIGLHLYPIWDAASLDE---WLYNGGPYQLIIFHFLIGIFCYMG 128
Query: 129 RQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQG 188
R++EL+ + +RP+ +AFS P+A +V LIYP+GQ + G++ F F++ FQ
Sbjct: 129 REWELSYRLGMRPWIPVAFSAPVAAATAVLLIYPIGQGSFSDGLMLGISGTFNFMIVFQA 188
Query: 189 FHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSM 247
HN ++PFHM+GVAGV G AL A+HG+ V ++L E + +T + Q EETY++
Sbjct: 189 EHNILMHPFHMLGVAGVFGGALFAAMHGSLVTSSLIRETTETESTNYGYKFGQEEETYNI 248
Query: 248 VTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 249 VAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFAALGISTMAFNLNGFNF 302
>gb|AAF89983.1|AF206709_1 (AF206709) PSII D1 reaction center protein [Heterocapsa niei]
Length = 347
Score = 168 bits (422), Expect = 8e-41
Identities = 94/278 (33%), Positives = 152/278 (53%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+FP A + + F G+ A + L G N ++ AV +N
Sbjct: 31 LYIGWFGILMFPLLVLATVAFISAFIFAPPVDIDGIREPVAGALLYGNNIISGAVIPSSN 90
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W EA G F W GG + FV LH G +M R++E A + +RP+
Sbjct: 91 AIGVHFYPVW--EALG-FDEWLYNGGTYQFVVLHFILGAGAYMGREWEFAFRLGMRPWIF 147
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+ +VF++YP+GQ + G++ F F+L FQ HN ++PFH++GVA
Sbjct: 148 VAFSAPLVAASAVFVVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHILGVAA 207
Query: 205 VLGAALLCAIHGATVENTLFEDGDGANTFR-AFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L + G + +N Q +ETYS+ A+ ++ ++ +
Sbjct: 208 VFGGSLFSAMHGSLVTSSLLAETAGDLSLNVGYNFGQEDETYSISAAHGYFGRLIFQYAS 267
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALGV +A NL +F
Sbjct: 268 FNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGLNF 305
>gb|AAF89981.1|AF206707_1 (AF206707) PSII D1 reaction center protein [Heterocapsa pygmaea]
Length = 348
Score = 168 bits (422), Expect = 8e-41
Identities = 94/278 (33%), Positives = 151/278 (53%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+FP A + F G+ A + L G N ++ AV +N
Sbjct: 32 LYIGWFGILMFPLLVLATVAYIAAFIFAPPVDIDGIREPVAGALLYGNNIISGAVIPSSN 91
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W EA G F W GG + FV LH G +M R++E A + +RP+
Sbjct: 92 AIGVHFYPVW--EALG-FDEWLYNGGTYQFVVLHFILGAGAYMGREWEFAFRLGMRPWIF 148
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+ +VF++YP+GQ + G++ F F+L FQ HN ++PFH++GVA
Sbjct: 149 VAFSAPLVAASAVFIVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHILGVAA 208
Query: 205 VLGAALLCAIHGATVENTLFEDGDGANTFR-AFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L + G + +N Q +ETYS+ A+ ++ ++ +
Sbjct: 209 VFGGSLFSAMHGSLVTSSLVAETAGDLSLNVGYNFGQEDETYSISAAHGYFGRLIFQYAS 268
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALGV +A NL +F
Sbjct: 269 FNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGLNF 306
>gi|11466347 D1 reaction center protein of photosystem II [Mesostigma viride]
gb|AAF43791.1|AF166114_3 (AF166114) D1 reaction center protein of photosystem II [Mesostigma
viride]
Length = 353
Score = 168 bits (422), Expect = 8e-41
Identities = 89/280 (31%), Positives = 152/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+++ PC A+ + G+ + S L G N ++ +V +N
Sbjct: 28 LYIGWFGVIMIPCLLTAISVYIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGSVIPMSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + V H G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIW---EAASLDEWLYNGGPYLMVVCHFLLGIACYMGREWELSFRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +A+G+ +A NL ++F
Sbjct: 263 ASFNNSRSLHFFLAVWPVVGIWFTAMGISTMAFNLNGFNF 302
>gi|11467381 D1 protein of the photosystem II reaction center core heterodimer
[Cyanophora paradoxa]
sp|P12719|PSBA_CYAPA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
gb|AAA81269.1| (U30821) D1 protein of the photosystem II reaction center core
heterodimer [Cyanophora paradoxa]
Length = 360
Score = 168 bits (420), Expect = 1e-40
Identities = 95/286 (33%), Positives = 153/286 (53%), Gaps = 26/286 (9%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
+++GW G+L+FP A T F+ ++ +A S G N ++ A
Sbjct: 28 LYIGWFGVLMFPLLLTAT------TLFIIAFVAAPPVDIDGIREPVAGSLFYGNNIISGA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V + ++ +W W GG + FV +H G+ +M R++EL+ +
Sbjct: 82 VIPSSAAIGMHFYPIW---EAASLDEWLYNGGPYQFVVMHFLLGVACYMGREWELSFRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ A+A+S P+A +VFLIYP+GQ + G++ F F+L FQ HN ++PFH
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWS 255
MMGVAGV G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++
Sbjct: 199 MMGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFG 256
Query: 256 QIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
++ +F+N R LHFF+ PV G+W +ALG+ +A NL +F
Sbjct: 257 RLIFQYASFNNSRSLHFFLALWPVVGIWFTALGLSTMAFNLNGLNF 302
>sp|Q32389|PSBA_HETCA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
gb|AAA57555.1| (U18090) D1 protein [Heterosigma carterae]
Length = 360
Score = 167 bits (419), Expect = 2e-40
Identities = 93/280 (33%), Positives = 150/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ A S + G N +T AV +N
Sbjct: 28 LYIGWFGVLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLMYGNNIITGAVIPSSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + + LH G+ +M R++EL+ + +RP+
Sbjct: 88 AIGVHFYPIW---EAASLDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIF 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+A +VFL+YP+GQ + G++ F F+L FQ HN ++PFHM GVAG
Sbjct: 145 VAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFEDG---DGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETSEIESANYGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W++ALGV +A NL ++F
Sbjct: 263 ASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNF 302
>sp|P07753|PSBA_CHLRE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||A22780 photosystem II protein D1 - Chlamydomonas reinhardtii chloroplast
emb|CAA25670.1| (X01424) herbicide binding protein [Chlamydomonas reinhardtii]
prf||1102190A protein psbA [Chlamydomonas reinhardtii]
Length = 352
Score = 167 bits (419), Expect = 2e-40
Identities = 90/298 (30%), Positives = 159/298 (53%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ + L+ +W+ + +++GW G+++ PC A + G+
Sbjct: 8 RENSSLWARFCEWITSTENRLYIGWFGVIMIPCLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N +T AV +N++ +W W GG + + H G+
Sbjct: 68 SGSLLYGNNIITGAVIPTSNAIGLHFYPIW---EAASLDEWLYNGGPYQLIVCHFLLGVY 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFL+YP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGLSTMAFNLNGFNF 302
>pir||F2KTD1 photosystem II protein D1 precursor - Cyanophora paradoxa cyanelle
emb|CAA32795.1| (X14667) psbA protein (AA 1-360) [Cyanophora paradoxa]
Length = 360
Score = 167 bits (418), Expect = 2e-40
Identities = 93/284 (32%), Positives = 152/284 (52%), Gaps = 22/284 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
+++GW G+L+FP A T F+ ++ +A S G N ++ A
Sbjct: 28 LYIGWFGVLMFPLLLTAT------TLFIIAFVAAPPVDIDGIREPVAGSLFYGNNIISGA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V + ++ +W W GG + FV +H G+ +M R++EL+ +
Sbjct: 82 VIPSSAAIGMHFYPIW---EAASLDEWLYNGGPYQFVVMHFLLGVACYMGREWELSFRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ A+A+S P+A +VFLIYP+GQ + G++ F F+L FQ HN ++PFH
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRA-FNPTQAEETYSMVTANRFWSQI 257
MMGVAGV G +L A+HG+ V ++L + + A + Q EETY++V A+ ++ ++
Sbjct: 199 MMGVAGVFGGSLFSAMHGSLVTSSLIRETTENESLNAGYKFGQEEETYNIVAAHGYFGRL 258
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALG+ +A NL +F
Sbjct: 259 IFQYASFNNSRSLHFFLALWPVVGIWFTALGLSTMAFNLNGLNF 302
>gb|AAD51002.1|AF170924_1 (AF170924) photosystem II D1 protein [Mastigocladus laminosus]
Length = 358
Score = 166 bits (415), Expect = 5e-40
Identities = 95/297 (31%), Positives = 157/297 (51%), Gaps = 13/297 (4%)
Query: 11 DENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFA----LGGWFTGTTFVTSWYTHGLA 65
+ L+D DW+ + ++VGW G+L+ P A + + ++
Sbjct: 9 ETGSLWDRFCDWITSTNNRIYVGWFGVLMIPTLLAATICFVIAFIAAPPVDIDGIREPVS 68
Query: 66 SSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIG 125
S L G N +T AV +N++ +W EA + W GG + + H G+
Sbjct: 69 GSLLYGNNIITGAVVPTSNAIGLHFYPIW--EALDE---WLYNGGPYELIVFHFLIGIFC 123
Query: 126 FMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILF 185
++ RQ+EL+ + +RP+ +A+S P+A SVFLIYP+GQ + G+ F F+L
Sbjct: 124 WLGRQWELSYRLGMRPWICVAYSAPVAAATSVFLIYPIGQGSFSDGMPLGITGTFNFMLV 183
Query: 186 FQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEET 244
FQ HN ++PFH +GVAGV G +L CA+HG+ V ++L E + + + Q +ET
Sbjct: 184 FQAEHNILMHPFHQLGVAGVFGGSLFCAMHGSLVTSSLVRETTETESQNYGYKFGQEQET 243
Query: 245 YSMVTANRFWSQIFG--VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
YS+V A+ ++ ++ +F+N R LHFF+ PV +W +ALG+ +A NL ++F
Sbjct: 244 YSIVAAHGYFGRLIWQYASFNNSRSLHFFLAAWPVVCIWFTALGISTMAFNLNGFNF 300
>sp|P50155|PSBA_PICAB PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S44245 photosystem II protein D1 precursor - Norway spruce
emb|CAA55629.1| (X78995) D1 protein [Picea abies]
Length = 353
Score = 165 bits (414), Expect = 7e-40
Identities = 91/298 (30%), Positives = 161/298 (53%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ +L+ DW+ + +++GW G+L+ P A + G+
Sbjct: 8 RESANLWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENQSANAGYKFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +ALNL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVAGIWFTALGISTMALNLNGFNF 302
>sp|P35876|PSB1_SYNEN PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
dbj|BAA03263.1| (D14325) D1 protein [Synechococcus elongatus]
Length = 360
Score = 165 bits (414), Expect = 7e-40
Identities = 94/300 (31%), Positives = 158/300 (52%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFA----LGGWFTGTTFVTSWYTHGL 64
++ +L++ +W+ D ++VGW G+++ P A + + +
Sbjct: 8 RESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N +T AV +N++ +W W GG + + H G
Sbjct: 68 SGSLLYGNNIITGAVVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLIIFHFLLGAS 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M RQ+EL+ + +RP+ +A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFH +GVAGV G AL CA+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNF 302
>sp|P46895|PSBA_PROMA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S54256 photosystem II protein D1 - Prochlorococcus marinus
emb|CAA89062.1| (Z49201) D1 protein of photosystem II [Prochlorococcus marinus]
Length = 360
Score = 165 bits (413), Expect = 9e-40
Identities = 87/281 (30%), Positives = 149/281 (52%), Gaps = 10/281 (3%)
Query: 26 DRFVFVGWSGLLLFPCAYFA----LGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVST 81
D ++VGW G+L+ PC A + + +A S+L G N ++ AV
Sbjct: 26 DNRIYVGWFGVLMIPCLLAAAICFVVAFIAAPPVDIDGIREPVAGSFLYGNNIISGAVVP 85
Query: 82 PANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRP 141
+N++ +W W GG + V H G+ G+M RQ+EL+ + +RP
Sbjct: 86 SSNAIGLHFYPIW---EAATLDEWLNNGGPYQLVIFHFLIGICGWMGRQWELSYRLGMRP 142
Query: 142 YNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMG 201
+ +A+S P++ +VFL+YP GQ + G++ F F+ FQ HN ++PFHM G
Sbjct: 143 WICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMAG 202
Query: 202 VAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF-- 258
VAG+ G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++
Sbjct: 203 VAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKFGQEEETYNIVAAHGYFGRLIFQ 262
Query: 259 GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV +W++++G+ +A NL ++F
Sbjct: 263 YASFNNSRSLHFFLAIFPVVCVWLTSMGICTMAFNLNGFNF 303
>pir||S26586 photosystem II protein D1 precursor - Synechococcus sp
emb|CAA78895.1| (Z16081) D1-protein [Synechococcus elongatus]
prf||2005436A photosystem II D-1 protein [Synechococcus elongatus]
Length = 360
Score = 165 bits (413), Expect = 9e-40
Identities = 94/300 (31%), Positives = 157/300 (52%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFA----LGGWFTGTTFVTSWYTHGL 64
++ +L++ +W+ D ++VGW G+++ P A + + +
Sbjct: 8 RESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N +T AV +N++ +W W GG + + H G
Sbjct: 68 SGSLLYGNNIITGAVVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLIIFHFLLGAS 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M RQ+EL + +RP+ +A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGRQWELTYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFH +GVAGV G AL CA+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFTALGISTMAFNLNGFNF 302
>sp|P29270|PSBA_ANAAZ PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2AI1Z photosystem II protein D1 precursor - Anabaena azollae
emb|CAA45515.1| (X64174) D1 protein [Anabaena azollae]
Length = 360
Score = 165 bits (413), Expect = 9e-40
Identities = 92/294 (31%), Positives = 157/294 (53%), Gaps = 11/294 (3%)
Query: 14 DLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSY 68
+++D +W+ + +++GW G+L+ P A+ + G+ A S
Sbjct: 12 NVWDRFCEWITSTENRIYIGWFGVLMIPTLVSAIACFVIAFIAAPPVDIDGIREPVAGSL 71
Query: 69 LEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFML 128
L G N ++ AV +N++ +W W GG + V H G+ ++
Sbjct: 72 LYGNNIISGAVVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLVIFHFLIGVACYLG 128
Query: 129 RQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQG 188
R++EL+ + +RP+ +AFS P+A +VFLIYP+GQ + G++ F F++ FQ
Sbjct: 129 REWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQA 188
Query: 189 FHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSM 247
HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EETY++
Sbjct: 189 EHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNI 248
Query: 248 VTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
V A+ ++ ++ +F+N R LHFF+ PV G+W +ALGV +A NL ++F
Sbjct: 249 VAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNF 302
>sp|P48265|PSBA_BUMFI PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
emb|CAA55807.1| (X79223) D1 subunit of photosystem II [Bumilleriopsis filiformis]
Length = 360
Score = 164 bits (412), Expect = 1e-39
Identities = 91/278 (32%), Positives = 151/278 (53%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ A S L G N ++ AV +N
Sbjct: 28 LYIGWFGVLMIPTLLTATTCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ +M R++EL+ + +RP+
Sbjct: 88 AIGVHFYPVWEAASVDE---WLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIF 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+A +VFL+YP+GQ + G++ F F+L FQ HN ++PFHM GVAG
Sbjct: 145 VAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAG 204
Query: 205 VLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L E + +T + Q EETY++V A+ ++ ++ +
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETSEVESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV +W++ALGV +A NL ++F
Sbjct: 265 FNNSRALHFFLAAWPVVRIWLTALGVTTMAFNLNGFNF 302
>sp|P06585|PSBA_PEA PHOTOSYSTEM Q(B) PROTEIN PRECURSOR (32 KD THYLAKOID MEMBRANE
PROTEIN) (PHOTOSYSTEM II PROTEIN D1)
pir||F2PMD1 photosystem II protein D1 precursor - garden pea chloroplast
gb|AAA84547.1| (M11005) 34.5 Kd protein [Pisum sativum]
Length = 353
Score = 164 bits (412), Expect = 1e-39
Identities = 90/298 (30%), Positives = 160/298 (53%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
+D +L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RDSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>emb|CAA25447.1| (X00929) 32-Kda thylakoid membrane protein [Euglena gracilis]
prf||1010249A protein,thylakoid membrane [Euglena gracilis]
Length = 345
Score = 164 bits (412), Expect = 1e-39
Identities = 90/284 (31%), Positives = 153/284 (53%), Gaps = 22/284 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
++VGW G+L+ P A T F+ ++ ++ S G N LT A
Sbjct: 29 LYVGWFGVLMIPTLLTA------ATVFIIAFIAAPPVDIDGIREPVSGSLFYGNNILTGA 82
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++ +W + + W GG + + H G+ +M R++EL+ +
Sbjct: 83 VVPTSNAIGLHFYPIWEATSLDE---WLYNGGPYQLIVCHFFIGICSYMGREWELSFRLG 139
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ A+A+S P+A +VF++YPLGQ + G++ F F++ FQ HN ++PFH
Sbjct: 140 MRPWIAVAYSAPVAAASAVFIVYPLGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 199
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
M+GVAGV G +L A+HG+ V ++L E + + + Q EETY+++ A+ ++ ++
Sbjct: 200 MLGVAGVFGGSLFSAMHGSLVTSSLLRETTENESINVGYKFGQEEETYNIIAAHAYFGRL 259
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALGV +A NL ++F
Sbjct: 260 IFQYASFNNSRSLHFFLAVWPVVGIWFTALGVSTMAFNLNGFNF 303
>gb|AAD40182.1|AF156980_1 (AF156980) photosystem II D1 protein [Synechococcus sp. WH7803]
Length = 359
Score = 164 bits (411), Expect = 2e-39
Identities = 92/284 (32%), Positives = 150/284 (52%), Gaps = 22/284 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
++VGW G+L+ P A T F+ ++ +A S + G N ++ A
Sbjct: 28 LYVGWFGVLMIPTLLAAT------TCFIVAFIAAPPVDIDGIREPVAGSLIYGNNIISGA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++ +W W GG + V H G+ +M R++EL+ +
Sbjct: 82 VVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLVVFHFLIGIFCYMGREWELSYRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ +A+S P+A +VFL+YP GQ + G++ F F+L FQ HN ++PFH
Sbjct: 139 MRPWICVAYSAPVAAASAVFLVYPFGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
MMGVAGV G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++
Sbjct: 199 MMGVAGVFGGSLFSAMHGSLVTSSLVRETTESESQNYGYKFGQEEETYNIVAAHGYFGRL 258
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALGV +A NL ++F
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFTALGVSTMAFNLNGFNF 302
>gi|7524765 photosystem II D1 protein [Chlorella vulgaris]
sp|P56318|PSBA_CHLVU PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||T07195 photosystem II protein D1 - Chlorella vulgaris chloroplast
dbj|BAA57842.1| (AB001684) photosystem II D1 protein [Chlorella vulgaris]
Length = 353
Score = 164 bits (411), Expect = 2e-39
Identities = 86/278 (30%), Positives = 149/278 (52%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +N
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + + H G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIW---EAASLDEWLYNGGPYQLIVCHFFLGICSYMGREWELSFRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VF+IYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFIIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++ +
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 265 FNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gi|7524753 PSII 32kDa protein [Pinus thunbergii]
sp|P24684|PSBA_PINCO PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S15957 photosystem II protein D1 precursor - shore pine chloroplast
pir||S29327 photosystem II protein D1 precursor - Japanese black pine
chloroplast
emb|CAA37757.1| (X53721) D1 protein of photosystem II [Pinus contorta]
emb|CAA37758.1| (X53722) D1 protein of photosystem II [Pinus contorta]
emb|CAA40381.1| (X57097) D1 protein of photosystem II [Pinus contorta]
emb|CAA40383.1| (X57097) D1 protein of photosystem II [Pinus contorta]
dbj|BAA02024.1| (D11467) photosystem II D1 protein [Pinus thunbergii]
dbj|BAA04462.1| (D17510) PSII 32kDa protein [Pinus thunbergii]
Length = 353
Score = 164 bits (411), Expect = 2e-39
Identities = 90/298 (30%), Positives = 160/298 (53%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ +L+ DW+ + +++GW G+L+ P A + G+
Sbjct: 8 RESANLWSRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENQSANAGYKFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVAGIWFTALGISTMAFNLNGFNF 302
>gi|11466695 psbA [Marchantia polymorpha]
sp|P06402|PSBA_MARPO PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2LVD1 photosystem II protein D1 precursor - liverwort (Marchantia
polymorpha) chloroplast
emb|CAA28077.1| (X04465) psbA [Marchantia polymorpha]
Length = 353
Score = 164 bits (411), Expect = 2e-39
Identities = 91/289 (31%), Positives = 156/289 (53%), Gaps = 15/289 (5%)
Query: 21 DWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFL 75
DW+ + +++GW G+L+ P A + G+ + S L G N +
Sbjct: 19 DWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNII 78
Query: 76 TAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELAR 135
+ A+ + ++ +W + + W GG + + LH G+ +M R++EL+
Sbjct: 79 SGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVACYMGREWELSY 135
Query: 136 SVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLN 195
+ +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++
Sbjct: 136 RLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMH 195
Query: 196 PFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANR 252
PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q EETY++V A+
Sbjct: 196 PFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHG 253
Query: 253 FWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 254 YFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gb|AAG60671.1|AF314010_1 (AF314010) PSII D1 protein [Prunus x yedoensis]
Length = 353
Score = 164 bits (410), Expect = 2e-39
Identities = 92/300 (30%), Positives = 160/300 (52%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIMALIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGSHFYPIWEAASVDE---WLYDGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R+ EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGRELELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLTREPTENETANDGSRFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++F +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 243 EETYNIVAAHGYFGRLFFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gi|11467759 D1 reaction-center protein of photosystem II [Nephroselmis
olivacea]
gb|AAD54781.1|AF137379_4 (AF137379) D1 reaction-center protein of photosystem II
[Nephroselmis olivacea]
Length = 353
Score = 164 bits (410), Expect = 2e-39
Identities = 92/289 (31%), Positives = 154/289 (52%), Gaps = 15/289 (5%)
Query: 21 DWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFL 75
DW+ + +++GW G+L+ P A + G G+ + S L G N +
Sbjct: 19 DWVTSTENRLYIGWFGVLMIPLLLTATSVFIIGFIAAPPVDIDGIREPVSGSLLFGNNII 78
Query: 76 TAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELAR 135
+ A+ + ++ +W W GG + + LH G+ +M R++EL+
Sbjct: 79 SGAIIPSSAAIGIHFYPIW---EAASIDEWLYNGGCYELIVLHFLLGVACYMGREWELSF 135
Query: 136 SVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLN 195
+ +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++
Sbjct: 136 RLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMH 195
Query: 196 PFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANR 252
PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q EETY++V A+
Sbjct: 196 PFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHG 253
Query: 253 FWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
++ ++ +F+N R LHFF+ PV +W +ALGV +A NL ++F
Sbjct: 254 YFGRLIFQYASFNNSRSLHFFLAAWPVVCIWFTALGVSTMAFNLNGFNF 302
>emb|CAA04456.1| (AJ001003) 32 kD PSII D1 protein [Picea abies]
Length = 353
Score = 164 bits (410), Expect = 2e-39
Identities = 90/298 (30%), Positives = 160/298 (53%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ +L+ DW+ + +++GW G+L+ P A + G+
Sbjct: 8 RESANLWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENQSANAGYKFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVAGIWFTALGISTMAFNLNGFNF 302
>sp|P15191|PSBA_PROHO PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2MWD1 photosystem II protein D1 precursor - Prochlorothrix hollandica
emb|CAA32489.1| (X14308) D1 protein (AA 1 - 353) [Prochlorothrix hollandica]
emb|CAA32665.1| (X14523) PsbA I protein (AA 1-353) [Prochlorothrix hollandica]
prf||1503231A psbA gene [Prochlorothrix hollandica]
Length = 353
Score = 164 bits (410), Expect = 2e-39
Identities = 88/278 (31%), Positives = 150/278 (53%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFA----LGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
++VGW G+++ P A + + +A S + G N ++ AV +N
Sbjct: 28 LYVGWFGVIMIPTLLTATICFIIAFIAAPPVDIDGIREPVAGSLMYGNNIISGAVVPSSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + V H G+ +M R++EL+ + +RP+
Sbjct: 88 AIGLHFYPIWEAASMDE---WLYNGGPYQLVVFHFLIGIFCYMGREWELSYRLGMRPWIC 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYPLGQ + G++ F F+L FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPLGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++ +
Sbjct: 205 VFGGSLFSAMHGSLVTSSLVRETSENESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W ++LG+ +A NL ++F
Sbjct: 265 FNNSRALHFFLAAWPVVGIWFTSLGISTMAFNLNGFNF 302
>gi|11466988 PSII D1-polypeptide [Euglena gracilis]
sp|P06631|PSBA_EUGGR PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S34503 photosystem II protein D1 - Euglena gracilis chloroplast
emb|CAA25319.1| (X00735) 32 kd protein [Euglena gracilis]
emb|CAA50082.1| (X70810) PSII D1-polypeptide [Euglena gracilis]
Length = 345
Score = 164 bits (410), Expect = 2e-39
Identities = 89/284 (31%), Positives = 153/284 (53%), Gaps = 22/284 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
++VGW G+L+ P A T F+ ++ ++ S G N +T A
Sbjct: 29 LYVGWFGVLMIPTLLTA------ATVFIIAFIAAPPVDIDGIREPVSGSLFYGNNIITGA 82
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++ +W + + W GG + + H G+ +M R++EL+ +
Sbjct: 83 VVPTSNAIGLHFYPIWEATSLDE---WLYNGGPYQLIVCHFFIGICSYMGREWELSFRLG 139
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ A+A+S P+A +VF++YPLGQ + G++ F F++ FQ HN ++PFH
Sbjct: 140 MRPWIAVAYSAPVAAASAVFIVYPLGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 199
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
M+GVAGV G +L A+HG+ V ++L E + + + Q EETY+++ A+ ++ ++
Sbjct: 200 MLGVAGVFGGSLFSAMHGSLVTSSLLRETTENESINVGYKFGQEEETYNIIAAHAYFGRL 259
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALGV +A NL ++F
Sbjct: 260 IFQYASFNNSRSLHFFLAVWPVVGIWFTALGVSTMAFNLNGFNF 303
>sp|P04997|PSB2_SYNP7 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||B25362 photosystem II protein D1-II precursor - Synechococcus sp
emb|CAA28292.1| (X04617) Q(B) protein (AA 1-360) [Synechococcus PCC6301]
emb|CAA28293.1| (X04618) Q(B) protein (AA 1-360) [Synechococcus PCC6301]
Length = 360
Score = 163 bits (409), Expect = 3e-39
Identities = 94/307 (30%), Positives = 160/307 (51%), Gaps = 13/307 (4%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFA----LGGWFTGTTF 55
MT AL + ++ L+ +W+ D ++VGW G+L+ P A + +
Sbjct: 1 MTTALQR--RESASLWQQFCEWVTSTDNRLYVGWFGVLMIPTLLTATICFIVAFIAAPPV 58
Query: 56 VTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFV 115
+A S + G N ++ AV +N++ +W W GG + V
Sbjct: 59 DIDGIREPVAGSLMYGNNIISGAVVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLV 115
Query: 116 ALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFG 175
H G+ +M R++EL+ + +RP+ +A+S P+A +VFLIYP+GQ + G
Sbjct: 116 VFHFLIGVFCYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLG 175
Query: 176 VAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFR 234
++ F F+ FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + +
Sbjct: 176 ISGTFNFMFVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNY 235
Query: 235 AFNPTQAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLAL 292
+ Q EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W ++LG+ +A
Sbjct: 236 GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTSLGISTMAF 295
Query: 293 NLRAYDF 299
NL ++F
Sbjct: 296 NLNGFNF 302
>sp|P24725|PSBA_CYACA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||A48306 photosystem II protein D1 precursor - red alga (Cyanidium
caldarium) chloroplast
emb|CAA36969.1| (X52758) photosystem II associated D1 protein [Cyanidium caldarium]
Length = 360
Score = 163 bits (409), Expect = 3e-39
Identities = 92/280 (32%), Positives = 149/280 (52%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLAS----SYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G G+ S L G N +T A+ +N
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIGFIAAPPVDIDGIREPGFRSLLYGNNIITGAIVPTSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGIHFYPIW---EAASLDEWLYNGGPYELIVLHFFIGICAYMGREWELSYRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+A +VF+IYP+GQ + G++ F F+L FQ HN ++PFHMMGVAG
Sbjct: 145 VAFSAPVAAATAVFIIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMMGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q ETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRERTENESANNGYKFG--QEYETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV + ++ALGV +A NL ++F
Sbjct: 263 ASFNNSRSLHFFLALWPVVCICVTALGVSTMAFNLNGFNF 302
>dbj|BAA82776.2| (AB020605) psbA [Conocephalum conicum]
Length = 353
Score = 163 bits (408), Expect = 4e-39
Identities = 89/280 (31%), Positives = 152/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIWEAASVDE---WLYNGGPYEIIVLHFLLGVACYMGREWELSYRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 263 ASFNNSRSLHFFLTAWPVVGIWFTALGISTMAFNLNGFNF 302
>dbj|BAA82781.1| (AB020621) similar to SWISS-PROT:p06402 [Conocephalum
supradecompositum]
Length = 353
Score = 163 bits (408), Expect = 4e-39
Identities = 89/280 (31%), Positives = 152/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVACYMGREWELSYRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 263 ASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>dbj|BAA82767.1| (AB020584) psbA [Conocephalum conicum]
Length = 353
Score = 163 bits (408), Expect = 4e-39
Identities = 89/280 (31%), Positives = 152/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVACYMGREWELSYRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 263 ASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>dbj|BAA82757.1| (AB020574) psbA [Conocephalum conicum]
dbj|BAA82758.1| (AB020575) psbA [Conocephalum conicum]
dbj|BAA82759.1| (AB020576) psbA [Conocephalum conicum]
dbj|BAA82761.1| (AB020578) psbA [Conocephalum conicum]
dbj|BAA82762.1| (AB020579) psbA [Conocephalum conicum]
dbj|BAA82763.1| (AB020580) psbA [Conocephalum conicum]
dbj|BAA82765.1| (AB020582) psbA [Conocephalum conicum]
dbj|BAA82766.1| (AB020583) psbA [Conocephalum conicum]
dbj|BAA82768.1| (AB020585) psbA [Conocephalum conicum]
dbj|BAA82769.1| (AB020586) psbA [Conocephalum conicum]
dbj|BAA82771.1| (AB020588) psbA [Conocephalum conicum]
dbj|BAA82772.1| (AB020589) psbA [Conocephalum conicum]
dbj|BAA82773.1| (AB020602) psbA [Conocephalum conicum]
dbj|BAA82774.1| (AB020603) psbA [Conocephalum conicum]
dbj|BAA82778.1| (AB020607) psbA [Conocephalum conicum]
Length = 353
Score = 163 bits (408), Expect = 4e-39
Identities = 89/280 (31%), Positives = 152/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIWEAASVDE---WLYNGGPYEIIVLHFLLGVACYMGREWELSYRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 263 ASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|Q33282|PSBA_VIGUN PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
emb|CAA56907.1| (X80932) photosystem II D1 protein [Vigna unguiculata]
Length = 353
Score = 163 bits (408), Expect = 4e-39
Identities = 89/298 (29%), Positives = 160/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G++L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGSSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P04998|PSBA_MEDSA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||A25580 photosystem II protein D1 precursor - alfalfa chloroplast
emb|CAA28646.1| (X04973) Q(B) polypeptide (AA 1-353) [Medicago sativa]
Length = 353
Score = 163 bits (408), Expect = 4e-39
Identities = 90/298 (30%), Positives = 158/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
+D L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RDSETLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N + A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIICGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>dbj|BAA76900.1| (AB025940) QB protein [Nicotiana tabacum]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 92/298 (30%), Positives = 160/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQ-IFGVA-FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ + IF A F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYATFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gb|AAD00106.1| (U63020) D1 protein [Magnolia pyramidata]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gi|11467171 PSII 32 KDa protein [Zea mays]
sp|P48183|PSBA_MAIZE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S58531 photosystem II protein D1 precursor - maize chloroplast
emb|CAA60265.1| (X86563) PSII 32 KDa protein [Zea mays]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gi|7525013 PSII 32 KDa protein [Arabidopsis thaliana]
sp|Q33592|PSBA_ARATH PHOTOSYSTEM Q(B) PROTEIN (32 KDA THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S57265 photosystem II protein D1 precursor - Arabidopsis thaliana
chloroplast
emb|CAA56270.1| (X79898) psbA [Arabidopsis thaliana]
dbj|BAA84365.1| (AP000423) PSII 32 KDa protein [Arabidopsis thaliana]
emb|CAB67123.1| (AJ271079) PSII D1 protein [Oenothera elata subsp. hookeri]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P36491|PSBA_POPDE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S42492 photosystem II protein D1 precursor - cottonwood
emb|CAA55040.1| (X78204) D1 protein [Populus deltoides]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P10510|PSBA_SECCE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
emb|CAB58232.1| (X13327) herbicide-binding protein D1 [Secale cereale]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P18290|PSBA_BRANA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1) (TRIAZINE-RESISTANCE
PROTEIN)
gb|AAA84447.1| (M36720) triazine-resistance [Brassica napus]
prf||1306442A gene psbA [Brassica napus]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 92/298 (30%), Positives = 160/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQ-IFGVA-FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ + IF A F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYAGFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P11848|PSBA_SINAL PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||A21730 photosystem II protein D1 precursor - white mustard chloroplast
emb|CAA25093.1| (X00340) pre-M(r)32000 PSII protein [Sinapis alba]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P13910|PSBA_VICFA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2VFD1 photosystem II protein D1 precursor - fava bean chloroplast
emb|CAA35688.1| (X17694) Q-B protein (AA 1-353) [Vicia faba]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
+D ++L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RDSHNLWGRFCNWITTTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + + +W + D W +GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAVIGLHFYPIWEAASVDD---WLYIGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ +A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIVVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+ G+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMQGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P04999|PSBA_PETHY PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||A25579 photosystem II protein D1 precursor - petunia chloroplast
emb|CAA28647.1| (X04974) Q(B) polypeptide (AA 1-353) [Petunia x hybrida]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSSENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gi|11466764 PSII 32kDa protein [Oryza sativa]
sp|P12094|PSBA_ORYSA PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||FMRZ32 photosystem II protein D1 precursor - rice chloroplast
emb|CAA34007.1| (X15901) PSII 32kDa protein [Oryza sativa]
gb|AAA84591.1| (M36191) Q-B protein (psbA) [Oryza sativa]
prf||1503143A psbA gene [Oryza sativa]
prf||1510376A quinone binding protein [Oryza sativa]
prf||1603356A photosystem II 32kD protein [Oryza sativa]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>emb|CAA30818.1| (X08017) psbA polypeptide (AA 1-353) [Nicotiana plumbaginifolia]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 92/298 (30%), Positives = 160/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQ-IFGVA-FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ + IF A F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYANFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P05337|PSBA_HORVU PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2BHD1 photosystem II protein D1 precursor - barley chloroplast
emb|CAA30763.1| (X07942) psbA protein (AA 1-353) [Hordeum vulgare]
emb|CAA30400.1| (X07521) D1 protein (psbA) (AA 1-353) [Hordeum vulgare]
gb|AAA84046.1| (M38374) herbicide-binding protein [Hordeum vulgare]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P02957|PSBA_SOYBN PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||FMSY32 photosystem II protein D1 precursor - soybean chloroplast
emb|CAA24986.1| (X00152) psb A gene [Glycine max]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gi|11465935 PSII 32kd protein [Nicotiana tabacum]
ref|NP_054912.1| PSII 32 kD protein [Spinacia oleracea]
sp|P02955|PSBA_SPIOL PHOTOSYSTEM Q(B) PROTEIN PRECURSOR (32 KDA THYLAKOID MEMBRANE
PROTEIN) (PHOTOSYSTEM II PROTEIN D1)
pir||FMSP32 photosystem II protein D1 precursor [validated] - spinach
chloroplast
pir||FMNT3D photosystem II protein D1 precursor - Debney's tobacco chloroplast
pir||FMSX3N photosystem II protein D1 precursor - black nightshade chloroplast
pir||F2CN1U photosystem II protein D1 precursor - upland cotton chloroplast
pir||F2NT1C photosystem II protein D1 precursor - curled-leaved tobacco
chloroplast
emb|CAA33895.1| (X15885) QB protein (AA 1-353) [Gossypium hirsutum]
emb|CAA30817.1| (X08016) psbA polypeptide (AA 1-353) [Nicotiana plumbaginifolia]
emb|CAA77338.1| (Z00044) PSII 32kd protein [Nicotiana tabacum]
emb|CAA25815.1| (X01651) psbA protein [Solanum nigrum]
gb|AAA84687.1| (J01448) psbA protein [Nicotiana debneyi]
emb|CAA75027.1| (Y14732) photosystem II D1 protein [Chenopodium rubrum]
dbj|BAA76899.1| (AB025939) QB protein [Nicotiana glutinosa]
emb|CAB88705.1| (AJ400848) PSII 32 kD protein [Spinacia oleracea]
prf||0901310A protein psbA,thylakoid membrane [Spinacia oleracea]
Length = 353
Score = 162 bits (407), Expect = 5e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gb|AAK11251.1|AF329007_1 (AF329007) PSII D1 protein [Prunus x yedoensis]
Length = 353
Score = 162 bits (406), Expect = 6e-39
Identities = 91/300 (30%), Positives = 159/300 (52%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIMALIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGLHFYPIWEAASVDE---WLYDGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+ R+ EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYRGRELELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANDGSRFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++F +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 243 EETYNIVAAHGYFGRLFFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>gb|AAA74185.1| (U25659) photosystem II protein D1 [Solanum nigrum]
Length = 353
Score = 162 bits (406), Expect = 6e-39
Identities = 92/298 (30%), Positives = 160/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHLLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQ-IFGVA-FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ + IF A F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYAGFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P04848|PSBA_TOBAC PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||FMNT32 photosystem II protein D1 precursor - common tobacco chloroplast
prf||1211235A photosystem II 32kD protein [Nicotiana tabacum]
Length = 353
Score = 162 bits (406), Expect = 6e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVHE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P02956|PSBA_AMAHY PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||FMMH32 photosystem II protein D1 precursor - green amaranth chloroplast
Length = 353
Score = 162 bits (406), Expect = 6e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFNLNGFNF 302
>sp|P32036|PSBA_CUSRE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S33912 photosystem II protein D1 precursor - southern Asian dodder
chloroplast
emb|CAA47847.1| (X67512) D1-protein [Cuscuta reflexa]
prf||2113216A psbA gene [Cuscuta reflexa]
Length = 353
Score = 162 bits (406), Expect = 6e-39
Identities = 89/298 (29%), Positives = 159/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIVSGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P51765|PSB1_SYNVU PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S45009 photosystem II protein D1 precursor - Synechococcus sp
emb|CAA55806.1| (X79222) D1 subunit of photosystem II [Synechococcus vulcanus]
Length = 360
Score = 162 bits (405), Expect = 8e-39
Identities = 93/300 (31%), Positives = 157/300 (52%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFA----LGGWFTGTTFVTSWYTHGL 64
++ +L++ +W+ D ++VGW G+++ P A + + +
Sbjct: 8 RESANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N +T AV +N++ +W W GG + + H G
Sbjct: 68 SGSLLYGNNIITGAVVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLIIFHFLLGAS 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M RQ+EL+ + +RP+ +A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFH +GVAGV G AL CA+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++ +F+N R LHFF+ V G+W +ALG+ +A NL ++F
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNF 302
>sp|P07063|PSBA_FREDI PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||A20978 photosystem II protein D1 precursor - Calothrix sp
gb|AAA24891.1| (K02074) photosystem II B protein (ps2B) [Fremyella diplosiphon]
prf||1006290A protein B photosystem II [Fremyella sp.]
Length = 360
Score = 162 bits (405), Expect = 8e-39
Identities = 92/293 (31%), Positives = 154/293 (52%), Gaps = 11/293 (3%)
Query: 15 LFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYL 69
++D +W+ + +++GW G+L+ P A + G+ A S +
Sbjct: 13 VWDRFCEWITSTENRIYIGWFGVLMIPTLLAATACFVIAFIAAPPVDIDGIREPVAGSLI 72
Query: 70 EGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLR 129
G N ++ AV +N++ +W W GG + V H G ++ R
Sbjct: 73 YGNNIISGAVVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLVIFHFLLGCACYLGR 129
Query: 130 QFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGF 189
Q+EL+ + +RP+ +A+S P+A +VFLIYP+GQ + G++ F F++ FQ
Sbjct: 130 QWELSYRLGMRPWICVAYSAPLASATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAE 189
Query: 190 HNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMV 248
HN L+PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EETY++V
Sbjct: 190 HNILLHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIV 249
Query: 249 TANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
A+ ++ ++ +F+N R LHFF+ PV G+W +ALGV +A NL ++F
Sbjct: 250 AAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVSTMAFNLNGFNF 302
>gb|AAK11250.1|AF329006_1 (AF329006) PSII D1 protein [Prunus x yedoensis]
Length = 353
Score = 161 bits (404), Expect = 1e-38
Identities = 91/300 (30%), Positives = 159/300 (52%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIMALIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGLHFYPIWEAASVDE---WLYDGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+ R+ EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYRGRELELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIREPTENETANDGSRFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++F +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 243 EETYNIVAAHGYFGRLFFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>dbj|BAA82770.1| (AB020587) psbA [Conocephalum conicum]
dbj|BAA82775.2| (AB020604) psbA [Conocephalum conicum]
Length = 353
Score = 161 bits (404), Expect = 1e-38
Identities = 89/278 (32%), Positives = 150/278 (53%), Gaps = 14/278 (5%)
Query: 31 VGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPANSL 86
+GW G+L+ P A + G+ + S L G N ++ A+ + ++
Sbjct: 30 IGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAI 89
Query: 87 AHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIA 146
+W + + W GG + + LH G+ +M R++EL+ + +RP+ A+A
Sbjct: 90 GLHFYPIWEAASVDE---WLYNGGPYEIIVLHFLLGVACYMGREWELSYRLGMRPWIAVA 146
Query: 147 FSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVL 206
+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAGV
Sbjct: 147 YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVF 206
Query: 207 GAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++ +
Sbjct: 207 GGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 265 FNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P31694|PSB2_ANASP PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2AI17 photosystem II protein D1 precursor - Anabaena sp. (strain PCC
7120)
gb|AAA63703.1| (U21332) D1 form II [Anabaena sp.]
gb|AAA63704.1| (U21333) D1 form II [Anabaena sp.]
gb|AAA63705.1| (U21334) D1 form II [Anabaena sp.]
Length = 360
Score = 161 bits (404), Expect = 1e-38
Identities = 90/284 (31%), Positives = 151/284 (52%), Gaps = 22/284 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
+++GW G+L+ P A T F+ ++ +A S + G N ++ A
Sbjct: 28 LYIGWFGVLMIPTLLAAT------TCFIIAFIAAPPVDIDGIREPVAGSLIYGNNIISGA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++ +W W GG + V H G+ ++ R++EL+ +
Sbjct: 82 VVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLVIFHFLTGVFCYLGREWELSYRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ +AFS P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFH
Sbjct: 139 MRPWICLAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
M+GVAGV G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLVRETTENESQNYGYKFGQEEETYNIVAAHGYFGRL 258
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALGV +A NL ++F
Sbjct: 259 IFQYASFNNSRQLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNF 302
>pir||F2NUD1 photosystem II protein D1 precursor - rye chloroplast
Length = 353
Score = 161 bits (404), Expect = 1e-38
Identities = 89/298 (29%), Positives = 158/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESTSLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAAFVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P09752|PSBA_CHLMO PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2KM1M photosystem II protein D1 precursor - Chlamydomonas moewusii
chloroplast
emb|CAA31841.1| (X13486) D1 protein [Chlamydomonas moewusii]
emb|CAA33622.1| (X15601) 32 kilodalton thylakoid membrane protein D1 or Q(B)
[Chlamydomonas moewusii]
Length = 353
Score = 161 bits (404), Expect = 1e-38
Identities = 90/300 (30%), Positives = 157/300 (52%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+++ P A + G+
Sbjct: 8 RESTSLWARFCEWITSTENRIYIGWFGVIMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ AV +N++ +W W GG + + H G+
Sbjct: 68 SGSLLYGNNIISGAVIPTSNAIGLHFYPIW---EAASLDEWLYNGGPYQLIVCHFFIGIC 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VF+IYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANAGYRFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL +F
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGLSTMAFNLNGLNF 302
>dbj|BAA83816.2| (AB025589) psbA [Alexandrium tamarense]
Length = 347
Score = 161 bits (403), Expect = 1e-38
Identities = 90/277 (32%), Positives = 145/277 (51%), Gaps = 10/277 (3%)
Query: 30 FVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPANS 85
++GW G+ +FP A+ + G+ A S L G N ++ AV +N+
Sbjct: 31 YIGWFGIFMFPLTGLAIIAYVAAFILAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNA 90
Query: 86 LAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAI 145
+ W W GG + FV LH G+ +M R++E + + +RP+ +
Sbjct: 91 IGVHFYPEW---ESATLLEWLYNGGTYQFVVLHFIGGVSSWMGREWEFSFRLGMRPWIYL 147
Query: 146 AFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGV 205
AFS P+ +VF+ YP+GQ + GV+ F F+L FQ HN ++PFH++GVAGV
Sbjct: 148 AFSAPLVAATAVFVFYPIGQGSFSDGMPLGVSGTFNFMLVFQAEHNILMHPFHILGVAGV 207
Query: 206 LGAALLCAIHGATVENTLFEDGDGANTFR-AFNPTQAEETYSMVTANRFWSQIF--GVAF 262
G +L A+HG+ V ++L + G + +N Q +ETYS+ A+ ++ ++ +F
Sbjct: 208 FGGSLFSAMHGSLVTSSLLAETSGDVSLNVGYNFGQEDETYSISAAHGYFGRLIFQYASF 267
Query: 263 SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+N R LHFF+ PV G+W +ALGV +A NL +F
Sbjct: 268 NNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGLNF 304
>dbj|BAA82779.1| (AB020619) similar to SWISS-PROT:p06402 [Conocephalum conicum]
dbj|BAA82780.1| (AB020620) similar to SWESS-PROT:p06402 [Conocephalum conicum]
Length = 353
Score = 161 bits (403), Expect = 1e-38
Identities = 88/280 (31%), Positives = 151/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIWEAASVDE---WLYNGGPYEIIVLHFLLGVACYMGREWELSYRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +ALG+ + NL ++F
Sbjct: 263 ASFNNSRSLHFFLAAWPVVGIWFTALGINTMGFNLNGFNF 302
>gi|11467647 PSII D1 reaction-center protein [Guillardia theta]
sp|O78446|PSBA_GUITH PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
gb|AAC35633.1| (AF041468) PSII D1 reaction-center protein [Guillardia theta]
Length = 360
Score = 161 bits (403), Expect = 1e-38
Identities = 92/306 (30%), Positives = 160/306 (52%), Gaps = 27/306 (8%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT------- 61
++ L++ W+ + +++GW G+L+ P A T F+ ++
Sbjct: 8 RESASLWERFCSWITSTENRLYIGWFGVLMIPTLLTAT------TVFIIAFIAAPPVDID 61
Query: 62 ---HGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALH 118
+A S L G N +T AV + S+ +W W GG + + H
Sbjct: 62 GIREPVAGSLLYGNNIITGAVIPSSASIGIHFYPIW---EAASLDEWLYNGGPYQLIVDH 118
Query: 119 GAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAA 178
G+ G++ R++E + + +RP+ ++AF+ P+A +VFL+YP+GQ + G++
Sbjct: 119 FLLGVCGWIGREWEFSYRLGMRPWISVAFTAPVAAASAVFLVYPIGQGSFSDGMPLGISG 178
Query: 179 IFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRA 235
F F+L FQ HN ++PFH +GVAGV G +L A+HG+ V ++L + + AN
Sbjct: 179 TFNFMLVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANYGYK 238
Query: 236 FNPTQAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALN 293
F Q EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG++ +A N
Sbjct: 239 FG--QEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVVGIWFTALGIMTMAFN 296
Query: 294 LRAYDF 299
L ++F
Sbjct: 297 LNGFNF 302
>sp|P16033|PSB2_SYNY3 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2YB16 photosystem II protein D1.II precursor - Synechocystis sp. (strain
PCC 6803)
emb|CAA31899.1| (X13547) D1 protein (AA 1 - 360) [Synechocystis PCC6803]
emb|CAA39472.1| (X56000) D1 polypeptide [Synechocystis PCC6803]
dbj|BAA16586.1| (D90899) photosystem II D1 protein [Synechocystis sp.]
dbj|BAA18230.1| (D90912) photosystem II D1 protein [Synechocystis sp.]
Length = 360
Score = 161 bits (403), Expect = 1e-38
Identities = 91/284 (32%), Positives = 150/284 (52%), Gaps = 22/284 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
++VGW G L+ P A T F+ ++ +A S L G N ++ A
Sbjct: 28 IYVGWFGTLMIPTLLTAT------TCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++ +W W GG + V H G+ +M RQ+EL+ +
Sbjct: 82 VVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLVVFHFLIGIFCYMGRQWELSYRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ +A+S P++ +VFLIYP+GQ + G++ F F++ FQ HN ++PFH
Sbjct: 139 MRPWICVAYSAPVSAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
M+GVAGV G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLVRETTEVESQNYGYKFGQEEETYNIVAAHGYFGRL 258
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +A+GV +A NL ++F
Sbjct: 259 IFQYASFNNSRSLHFFLGAWPVIGIWFTAMGVSTMAFNLNGFNF 302
>sp|P24726|PSBA_ECTSI PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S32576 photosystem II protein D1 precursor - brown alga (Ectocarpus
siliculosus)
emb|CAA40023.1| (X56695) D1 [Ectocarpus siliculosus]
Length = 360
Score = 161 bits (403), Expect = 1e-38
Identities = 89/278 (32%), Positives = 146/278 (52%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G L+ P A + G+ A S L G N ++ AV +N
Sbjct: 28 LYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + + H G+ +M R++EL+ + +RP+
Sbjct: 88 AIGIHFYPIW---EAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIF 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+A +VFL+YP+GQ + G++ F F++ FQ HN + PFHM GVAG
Sbjct: 145 VAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMRPFHMAGVAG 204
Query: 205 VLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++ +
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W++ALGV +A NL ++F
Sbjct: 265 FNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNF 302
>sp|P35860|PSBA_CHLEL PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S14137 photosystem II protein D1 - Chlorella ellipsoidea chloroplast
emb|CAA44621.1| (X62800) chloroplast Q-B binding protein [Chlorella ellipsoidea]
Length = 352
Score = 161 bits (403), Expect = 1e-38
Identities = 88/278 (31%), Positives = 149/278 (52%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---ASSYL-EGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ S YL G N ++ AV +N
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGYLLYGNNIISGAVVPTSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + + H G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIW---EAASLDEWLYNGGPYQLIVCHFFLGICCYMGREWELSFRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VF+IYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFIIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++ +
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESRNAGYKFGQEEETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 265 FNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>dbj|BAA82764.1| (AB020581) psbA [Conocephalum conicum]
dbj|BAA82777.1| (AB020606) psbA [Conocephalum conicum]
Length = 353
Score = 161 bits (402), Expect = 2e-38
Identities = 88/280 (31%), Positives = 151/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIWEAASVDE---WLYNGGPYEIIVLHFLLGVACYMGREWELSYRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV +W +ALG+ +A NL ++F
Sbjct: 263 ASFNNSRSLHFFLAAWPVVSIWFTALGISTMAFNLNGFNF 302
>dbj|BAA82760.1| (AB020577) psbA [Conocephalum conicum]
Length = 353
Score = 161 bits (402), Expect = 2e-38
Identities = 88/280 (31%), Positives = 151/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIWEAASVDE---WLYNGGPYEIIVLHFLLGVACYMGREWELSYRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +AL + +A NL ++F
Sbjct: 263 ASFNNSRSLHFFLAAWPVVGIWFTALSISTMAFNLNGFNF 302
>gi|11465678 Photosystem II Q(b) protein (D1) [Porphyra purpurea]
sp|P51212|PSBA_PORPU PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S73133 photosystem II protein D1 (psbA) - red alga (Porphyra purpurea)
chloroplast
gb|AAC08098.1| (U38804) Photosystem II Q(b) protein (D1) [Porphyra purpurea]
Length = 360
Score = 161 bits (402), Expect = 2e-38
Identities = 90/298 (30%), Positives = 157/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L++ W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESASLWERFCSWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFVAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
A S L G N ++ AV + ++ +W W GG + V LH G+
Sbjct: 68 AGSLLYGNNIISGAVIPSSAAIGIHFYPIW---EAASLDEWLYNGGPYQLVVLHFLTGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
++ R++EL+ + +RP+ ++AF+ P+A +VFL+YP+GQ + G++ F F+L
Sbjct: 125 CYIGREWELSYRLGMRPWISVAFTAPVAAAAAVFLVYPIGQGSFSDGMPLGISGTFNFML 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFH +GVAGV G +L A+HG+ V ++L E + + A+ Q EE
Sbjct: 185 VFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETSENESANYAYKFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W++AL V +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGLWPVVGIWLTALSVSTMAFNLNGFNF 302
>sp|P04996|PSB1_SYNP7 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||A25362 photosystem II protein D1-I precursor - Synechococcus sp
emb|CAA28291.1| (X04616) Q(B) protein (AA 1-360) [Synechococcus PCC6301]
gb|AAA22055.1| (M11557) thylakoid membrane protein (psbA) [Synechococcus sp. PCC
6301]
Length = 360
Score = 161 bits (402), Expect = 2e-38
Identities = 89/295 (30%), Positives = 156/295 (52%), Gaps = 11/295 (3%)
Query: 13 NDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFA----LGGWFTGTTFVTSWYTHGLASS 67
++++D +W+ D ++VGW G+L+ P A + + +A S
Sbjct: 11 DNVWDRFCEWVTSTDNRIYVGWFGVLMIPTLLTATICFIVAFIAAPPVDIDGIREPVAGS 70
Query: 68 YLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFM 127
+ G N ++ AV +N++ +W W GG + V H G+ +M
Sbjct: 71 LMYGNNIISGAVVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLVVFHFLLGISCYM 127
Query: 128 LRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQ 187
RQ+EL+ + +RP+ +A+S P++ +VFLIYP+GQ + G++ F F+ FQ
Sbjct: 128 GRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIYPIGQGSFSDGMPLGISGTFNFMFVFQ 187
Query: 188 GFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYS 246
HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EETY+
Sbjct: 188 AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYN 247
Query: 247 MVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+V A+ ++ ++ +F+N R LHFF+ PV G+W +++G+ +A NL ++F
Sbjct: 248 IVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVVGIWFTSMGISTMAFNLNGFNF 302
>gb|AAG60679.1|AF315339_1 (AF315339) PSII D1 protein [Prunus x yedoensis]
Length = 353
Score = 160 bits (401), Expect = 2e-38
Identities = 90/300 (30%), Positives = 158/300 (52%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIMALIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGSHFYPIWEAASVDE---WLYDGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R+ EL+ + +RP+ A+A+ P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGRELELSFRLGMRPWIAVAYPAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLTRETTENESANEGSRFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 243 EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>dbj|BAA82782.1| (AB020622) similar to SWISS-PROT:p06402 [Dumortiera hirsuta]
Length = 353
Score = 160 bits (401), Expect = 2e-38
Identities = 88/278 (31%), Positives = 150/278 (53%), Gaps = 14/278 (5%)
Query: 31 VGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPANSL 86
+GW G+L+ P A + G+ + S L G N ++ A+ + ++
Sbjct: 30 IGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAI 89
Query: 87 AHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIA 146
+W + + W GG + + LH G+ +M R++EL+ + +RP+ A+A
Sbjct: 90 GLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVACYMGREWELSYRLGMRPWIAVA 146
Query: 147 FSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVL 206
+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAGV
Sbjct: 147 YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVF 206
Query: 207 GAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
G +L A+HG+ V ++L + + AN F Q +ETY++V A+ ++ ++ +
Sbjct: 207 GGSLFSAMHGSLVTSSLIRETTENESANAGYKFG--QEQETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 265 FNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P27201|PSBA_SPIOG PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2DWD1 photosystem II protein D1 precursor - Spirodela oligorhiza
chloroplast
emb|CAA42156.1| (X59557) D1 protein [Spirodela punctata]
Length = 353
Score = 160 bits (400), Expect = 3e-38
Identities = 86/278 (30%), Positives = 151/278 (53%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVRCYMGREWELSFRLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++ +
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W ++LG+ +A NL ++F
Sbjct: 265 FNNSRSLHFFLAAWPVIGIWFTSLGISTMAFNLNGFNF 302
>sp|P46242|PSB1_ANASP PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
gb|AAB59998.1| (U21331) D1 form I [Anabaena sp.]
Length = 360
Score = 159 bits (399), Expect = 4e-38
Identities = 90/278 (32%), Positives = 147/278 (52%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
++VGW G+L+ P A + G+ A S + G N ++ AV +N
Sbjct: 28 IYVGWFGVLMIPTLLAATVCFIIAFVAAPPVDIDGIREPVAGSLIYGNNIISGAVVPSSN 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + V H G ++ RQ+EL+ + +RP+
Sbjct: 88 AIGLHFYPIW---EAASLDEWLYNGGPYQLVIFHFLIGCACYLGRQWELSYRLGMRPWIC 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYSAPLASATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++ +
Sbjct: 205 VFGGSLFSAMHGSLVTSSLVRETTEIESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALGV +A NL ++F
Sbjct: 265 FNNSRQLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNF 302
>dbj|BAA83817.2| (AB025590) psbA [Alexandrium catenella]
Length = 335
Score = 159 bits (398), Expect = 5e-38
Identities = 89/278 (32%), Positives = 147/278 (52%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
++VGW G +FP + A+ G+ T G+ A S L G N ++ V +N
Sbjct: 30 LYVGWFGTFMFPLSGLAIIGYMTAFILAPPVDIDGIREPVAGSLLYGNNIISGGVIPSSN 89
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ W W GG + F+ LH G+ +M R++E + + +RP+
Sbjct: 90 AIGVHFYPEW---ESATLLEWLYNGGTYQFIVLHFIGGVSSWMGREWEFSFRLGMRPWIY 146
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+ +VF++YP+GQ + G++ F F+L FQ N ++PFH++GVAG
Sbjct: 147 LAFSAPLIAATAVFILYPIGQGSFSDGMPLGMSGTFNFMLVFQAEQNILMHPFHILGVAG 206
Query: 205 VLGAALLCAIHGATVENTLFEDGDGANTFR-AFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ V ++L + G + +N Q +ETYS+ A+ ++ ++ +
Sbjct: 207 VFGGSLFSAMHGSLVTSSLLAESPGDVSLNIGYNFGQEDETYSISAAHGYFGRLIFQYAS 266
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALGV +A NL +F
Sbjct: 267 FNNSRSLHFFLGGWPVIGIWFTALGVSTMAFNLNGLNF 304
>emb|CAA25252.1| (X00616) P32 protein [Nicotiana tabacum]
Length = 353
Score = 159 bits (398), Expect = 5e-38
Identities = 88/298 (29%), Positives = 158/298 (52%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + L G+
Sbjct: 68 SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLDFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P51759|PSBA_CYAA5 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
gb|AAD09838.1| (U39610) D1 [Cyanothece sp. ATCC 51142]
Length = 356
Score = 159 bits (397), Expect = 7e-38
Identities = 91/284 (32%), Positives = 149/284 (52%), Gaps = 22/284 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
++VGW G L+ P A T F+ ++ +A S L G N ++ A
Sbjct: 28 IYVGWFGTLMIPTLLTAT------TCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIVSGA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++ +W W GG + V H G+ +M RQ+EL+ +
Sbjct: 82 VVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLVIFHFLIGIFCYMGRQWELSYRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ +A+S P++ +VFLIYP+GQ + G++ F F+ FQ HN ++PFH
Sbjct: 139 MRPWICVAYSAPVSARTAVFLIYPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
M+GVAGV G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLVRETTEIESQNYGYKFGQEEETYNIVAAHGYFGRL 258
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +A+GV +A NL ++F
Sbjct: 259 IFQYASFNNSRALHFFLGAWPVIGIWFTAMGVSTMAFNLNGFNF 302
>sp|P14660|PSBA_SYNY4 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2YB17 photosystem II protein D1 precursor - Synechocystis sp. (strain
PCC 6714)
emb|CAA33538.1| (X15514) psbAI product (AA 1-360) [Synechocystis PCC6714]
Length = 360
Score = 157 bits (394), Expect = 2e-37
Identities = 90/284 (31%), Positives = 149/284 (51%), Gaps = 22/284 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
++VGW G L+ P A T F+ ++ +A S L G N ++ A
Sbjct: 28 IYVGWFGTLMIPTLLTAT------TCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++ +W W GG + V G+ +M RQ+EL+ +
Sbjct: 82 VVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLVVFQFLIGIFCYMGRQWELSYRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ +A+S P++ +VFLIYP+GQ + G++ F F++ FQ HN ++PFH
Sbjct: 139 MRPWICVAYSAPVSARTAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
M+GVAGV G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLVRETTEVESQNYGYKFGQEEETYNIVAAHGYFGRL 258
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +A+GV +A NL ++F
Sbjct: 259 IFQYASFNNSRSLHFFLGAWPVIGIWFTAMGVSTMAFNLNGFNF 302
>gb|AAD34735.1| (AF131887) photosystem Q (B) protein precursor [Poa annua]
Length = 296
Score = 157 bits (392), Expect = 3e-37
Identities = 80/239 (33%), Positives = 138/239 (57%), Gaps = 6/239 (2%)
Query: 64 LASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGL 123
++ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 22 VSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGV 78
Query: 124 IGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFI 183
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F+
Sbjct: 79 ACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFM 138
Query: 184 LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAE 242
+ FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q E
Sbjct: 139 IVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEE 198
Query: 243 ETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
ETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 199 ETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 257
>sp|P51764|PSB2_MICAE PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
dbj|BAA12284.1| (D84228) D1 protein [Microcystis aeruginosa]
Length = 360
Score = 157 bits (392), Expect = 3e-37
Identities = 89/284 (31%), Positives = 150/284 (52%), Gaps = 22/284 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
++VGW G+++ P A T F+ ++ +A S L G N ++ A
Sbjct: 28 LYVGWFGVIMIPTLLTAT------TCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++ +W W GG + V H G+ ++ RQ+EL+ +
Sbjct: 82 VVPSSNAIGLHFYPIW---EAASLDEWLYNGGPYQLVIFHFLLGVFCYLGRQWELSFRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ +A+S P++ +VFLIYP+GQ + G++ F F+ FQ HN ++PFH
Sbjct: 139 MRPWICVAYSAPVSAATAVFLIYPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
M+GVAGV G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLVRETTEIESQNYGYKFGQEEETYNIVAAHGYFGRL 258
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +A+GV +A NL ++F
Sbjct: 259 IFQYASFNNSRSLHFFLGAWPVIGIWFTAMGVSTMAFNLNGFNF 302
>gb|AAD34734.1| (AF131886) mutant photosystem Q (B) protein precursor [Poa annua]
Length = 296
Score = 156 bits (391), Expect = 4e-37
Identities = 79/239 (33%), Positives = 138/239 (57%), Gaps = 6/239 (2%)
Query: 64 LASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGL 123
++ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 22 VSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGV 78
Query: 124 IGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFI 183
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F+
Sbjct: 79 ACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFM 138
Query: 184 LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAE 242
+ FQ HN ++PFHM+GVAGV G +L A+HG+ + ++L E + + + Q E
Sbjct: 139 IVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLITSSLIRETTENESANEGYKFGQEE 198
Query: 243 ETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
ETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 199 ETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 257
>sp|P07826|PSB1_SYNY3 PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||F2YB13 photosystem II protein D1 precursor - Synechocystis sp. (strain
PCC 6803)
dbj|BAA18829.1| (D90917) photosystem II D1 protein [Synechocystis sp.]
Length = 360
Score = 156 bits (391), Expect = 4e-37
Identities = 93/300 (31%), Positives = 156/300 (52%), Gaps = 23/300 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
+++GW G+L+ P A T F+ ++ +A S L G N +TAA
Sbjct: 28 LYIGWFGVLMIPTLLTAT------TCFIIAFIAAPPVDIDGIREPIAGSLLYGNNIITAA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++ +W + + W GG + + H G+ ++ RQ+EL+ +
Sbjct: 82 VVPSSNAIGLHFYPIWEAHSLDE---WLYNGGPYQLIVFHFLIGIFCYLGRQWELSYRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ +A+S P+A + LIY +GQ + G++ F F+L Q HN ++PFH
Sbjct: 139 MRPWICVAYSAPVAAATATLLIYSIGQGSFSDGLPLGISGTFNFMLVLQAEHNVLMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
M+GVAGV G AL A+HG+ V ++L E + + + + Q EETY++V A+ ++ ++
Sbjct: 199 MLGVAGVFGGALFAAMHGSLVTSSLIRETTEVESQNQGYKFGQEEETYNIVAAHGYFGRL 258
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETF 315
+F+N R LHFF+ PV G+W +AL V A NL ++F +Q I A+ T+
Sbjct: 259 IFQYASFNNSRALHFFLGAWPVVGIWFAALAVCCFAFNLNGFNF-NQSILDAQGRPVSTW 317
>gb|AAA84445.1| (K01200) psbA gene product [Amaranthus hybridus]
prf||1001242A protein psbA [Amaranthus hybridus]
Length = 317
Score = 156 bits (391), Expect = 4e-37
Identities = 80/239 (33%), Positives = 138/239 (57%), Gaps = 6/239 (2%)
Query: 64 LASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGL 123
++ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 31 VSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGV 87
Query: 124 IGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFI 183
+M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F+
Sbjct: 88 ACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFM 147
Query: 184 LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAE 242
+ FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q E
Sbjct: 148 IVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEE 207
Query: 243 ETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
ETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 208 ETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFNLNGFNF 266
>gb|AAC99848.1| (U28165) photosystem II core 32 kDa protein [Palmaria palmata]
Length = 360
Score = 156 bits (390), Expect = 5e-37
Identities = 85/280 (30%), Positives = 150/280 (53%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+++ P A + G+ A S L G N ++ A+ +
Sbjct: 28 LYIGWFGVVMIPTLLTATSVFIIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAIIPSSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + + LH G+ ++ R++EL+ + +RP+ +
Sbjct: 88 AIGIHFYPIW---EAASLDEWLYNGGPYQLIVLHFLLGVCCYIGREWELSYRLGMRPWIS 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AF+ P+A +VFL+YP+GQ + G++ F F+L FQ HN ++PFH +GVAG
Sbjct: 145 VAFTAPVAAAAAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANYGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W++++ V +ALNL ++F
Sbjct: 263 ASFNNSRALHFFLGAWPVVGIWLTSMSVSTMALNLNGFNF 302
>gb|AAK11254.1|AF329010_1 (AF329010) PSII D1 protein [Prunus x yedoensis]
Length = 353
Score = 154 bits (386), Expect = 1e-36
Identities = 88/300 (29%), Positives = 156/300 (51%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIALIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGSHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+ R+ EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYRGRELELSFPLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGSRFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A ++F
Sbjct: 243 EETYNIVAAHGYFGRLTFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFFKNGFNF 302
>gb|AAK11253.1|AF329009_1 (AF329009) PSII D1 protein [Prunus x yedoensis]
Length = 353
Score = 154 bits (386), Expect = 1e-36
Identities = 88/300 (29%), Positives = 156/300 (51%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGSHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R+ EL+ + +RP+ A+A+ P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGRELELSFPLGMRPWIAVAYPAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGSRFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A ++F
Sbjct: 243 EETYNIVAAHGYFGRLTFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFFKNGFNF 302
>gb|AAK11252.1|AF329008_1 (AF329008) PSII D1 protein [Prunus x yedoensis]
Length = 353
Score = 154 bits (386), Expect = 1e-36
Identities = 88/300 (29%), Positives = 156/300 (51%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIMAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGSHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R+ EL+ + +RP+ A+A+ P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGRELELSFPLGMRPWIAVAYPAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGSRFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A ++F
Sbjct: 243 EETYNIVAAHGYFGRLTFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFFKNGFNF 302
>gb|AAG60680.1|AF315340_1 (AF315340) PSII D1 protein [Prunus sargentii]
Length = 353
Score = 154 bits (386), Expect = 1e-36
Identities = 86/298 (28%), Positives = 154/298 (50%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIRVPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R+ EL+ + +RP+ A+A+ P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYMGRELELSFPLGMRPWIAVAYPAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGPLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY+ V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A + ++F
Sbjct: 245 TYNFVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFFINGFNF 302
>gb|AAG60681.1|AF315341_1 (AF315341) PSII D1 protein [Prunus serrulata var. quelpaertensis]
Length = 353
Score = 154 bits (385), Expect = 2e-36
Identities = 86/298 (28%), Positives = 155/298 (51%), Gaps = 11/298 (3%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIATLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGSHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+ R+ EL+ + +RP+ A+A+ P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYRGRELELSFPLGMRPWIAVAYPAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q EE
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 245 TYNIVPAHGYFGRLTFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>dbj|BAA86296.1| (AB027234) photosystem II core 32 kDa protein [Gymnodinium
mikimotoi]
Length = 360
Score = 153 bits (383), Expect = 3e-36
Identities = 91/316 (28%), Positives = 159/316 (49%), Gaps = 15/316 (4%)
Query: 5 LGKFTKDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHG 63
L K ++ ++ W+ + +++GW G L+ P A + G G
Sbjct: 6 LNKKSQQTTPAWEFFCSWVTTTENRLYLGWFGCLMVPTLVSATFAYIIGFLAAPPVDIDG 65
Query: 64 L----ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHG 119
+ + S L N ++ AV +N++ +W W GG + V H
Sbjct: 66 IREPVSGSLLYANNIISGAVIPSSNAMGVHFYPIW---EAASLDEWLYNGGTYQLVVFHF 122
Query: 120 AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAI 179
G+ ++ R++EL+ + +RP+ +AFS P+A +VF++YP+GQ + G++
Sbjct: 123 FIGVCSYLGREWELSYRLGMRPWIFVAFSAPVAAASAVFIVYPIGQGSFSDGMPLGISGT 182
Query: 180 FRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG---DGANTFRAF 236
F F+L FQ HN ++P HM GVA V G +L A+HG+ V ++L ++ + AN F
Sbjct: 183 FNFMLVFQAEHNILMHPLHMFGVAAVFGGSLFSAMHGSLVTSSLLKETAEFESANYGYRF 242
Query: 237 NPTQAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNL 294
Q+ ETY++V A+ ++ ++ +F+N R LHFF+ PV G+W++A+GV +A NL
Sbjct: 243 G--QSTETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVVGIWLTAMGVSTMAFNL 300
Query: 295 RAYDFVSQEIRAAEDP 310
+F + A+ P
Sbjct: 301 NGLNFQQSILDASGCP 316
>emb|CAA68778.1| (Y00885) D1 protein (AA 1-360) [Synechocystis PCC6803]
Length = 360
Score = 152 bits (381), Expect = 5e-36
Identities = 93/300 (31%), Positives = 155/300 (51%), Gaps = 23/300 (7%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYT----------HGLASSYLEGCNFLTAA 78
+++GW G+L+ P A T F+ ++ +A S L G N +TAA
Sbjct: 28 LYIGWFGVLMIPTLLTAT------TCFIIAFIAAPPVDIDGIREPIAGSLLYGNNIITAA 81
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
V +N++A +W + + W GG + H G+ ++ RQ+EL+ +
Sbjct: 82 VVPSSNAIALHFYPIWEAHSLDE---WLYNGGPYQLNVFHFLIGIFCYLGRQWELSYRLG 138
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198
+RP+ +A+S P+A + LIY +GQ + G++ F F+L Q HN ++PFH
Sbjct: 139 MRPWICVAYSAPVAAATATLLIYSIGQGSFSDGLPLGISGTFNFMLVLQAEHNVLMHPFH 198
Query: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
M+GVAGV G AL A+HG+ V ++L E + + + + Q EETY++V A+ ++ ++
Sbjct: 199 MLGVAGVFGGALFAAMHGSLVTSSLIRETTEVESQNQGYKFGQEEETYNIVAAHGYFGRL 258
Query: 258 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETF 315
+F+N R LH F+ PV G+W +AL V A NL ++F +Q I A+ T+
Sbjct: 259 IFQYASFNNSRALHSFLGAWPVVGIWFAALAVCCFAFNLNGFNF-NQSILDAQGRPVSTW 317
>gb|AAG60670.1|AF314009_1 (AF314009) PSII D1 protein [Prunus x yedoensis]
Length = 353
Score = 151 bits (378), Expect = 1e-35
Identities = 87/300 (29%), Positives = 155/300 (51%), Gaps = 15/300 (5%)
Query: 10 KDENDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64
++ L+ +W+ + +++GW G+L+ P A + G+
Sbjct: 8 RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
+ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 68 SGSLLYGNNIISRAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+ R+ EL+ + +RP+ A+A+ P+A +VFLIYP+GQ + G++ F F++
Sbjct: 125 CYRGRELELSFPLGMRPWIAVAYPAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQA 241
FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L + + AN F Q
Sbjct: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGSRFG--QE 242
Query: 242 EETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A ++F
Sbjct: 243 EETYNIVAAHGYFGRLTFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFFKNGFNF 302
>gb|AAF89984.1|AF206710_1 (AF206710) PSII D1 reaction center protein [Scrippsiella
trochoidea]
Length = 264
Score = 151 bits (378), Expect = 1e-35
Identities = 80/238 (33%), Positives = 134/238 (55%), Gaps = 6/238 (2%)
Query: 65 ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLI 124
A S L G N ++ ++ +N++ +W A + W GG + FV LH G+
Sbjct: 1 AGSLLYGNNIISGSLVPSSNAIGVHFYPVWESPA---YYEWLYNGGSYQFVVLHFIVGVS 57
Query: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184
+M R++E + + +RP+ +A+S P+ +VF++YP+GQ + G++ F F+L
Sbjct: 58 AWMGREWEFSFRLSMRPWIILAYSAPVTGAAAVFIVYPIGQGSFSDGMPLGISGTFNFML 117
Query: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRA-FNPTQAEE 243
FQ HN ++PFH++GVA V G +L A+HG+ V ++L + G + A +N Q E
Sbjct: 118 VFQAEHNILMHPFHILGVAAVFGGSLFSAMHGSLVTSSLLAESAGDLSLNAGYNFGQVSE 177
Query: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
TYS+ A+ ++ ++ +F+N R LHFF+ PV G+W +ALGV +A NL +F
Sbjct: 178 TYSISAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVIGIWFTALGVSTMAFNLNGLNF 235
>dbj|BAA83812.1| (AB025585) psbA [Prorocentrum micans]
Length = 343
Score = 151 bits (377), Expect = 2e-35
Identities = 85/281 (30%), Positives = 149/281 (52%), Gaps = 16/281 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+LLFP + + G+ + S L N +T AV +N
Sbjct: 27 LYIGWFGVLLFPLIAVSTVAYVAAFILAPPVDIDGIREPVSGSLLYSNNIITGAVIPSSN 86
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + FV LH ++ ++ R++E + + +RP+
Sbjct: 87 AIGVHFYPVWEAISNNE---WLYNGGTYQFVVLHFLAAVLAWLGREYEYSFRLGMRPWIY 143
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AFS P+ +VF++YP+GQ + G++ F F+L FQ HN ++PFH++GV+
Sbjct: 144 LAFSAPVVAASAVFVVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHILGVSA 203
Query: 205 VLGAALLCAIHGATVENTLFEDG---DGANTFRAFNPTQAEETYSMVTANRFWSQI---F 258
V G +L A+HG+ V ++L + D N F Q +ETY++ A+ ++ ++ +
Sbjct: 204 VFGGSLFSAMHGSLVTSSLLSETASYDSLNAGYVFG--QEDETYAISAAHGYFGRLLFQY 261
Query: 259 GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
G +F+N R LHFF+ PV G+W +A+GV +A NL +F
Sbjct: 262 G-SFNNSRSLHFFLAAWPVIGIWCTAIGVSTMAFNLNGLNF 301
>gb|AAG60682.1|AF315342_1 (AF315342) PSII D1 protein [Prunus subhirtella var. ascendens]
Length = 353
Score = 150 bits (375), Expect = 3e-35
Identities = 83/278 (29%), Positives = 146/278 (51%), Gaps = 10/278 (3%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPAN 84
+++GW G+L+ P A + G+ + S L G N ++ A+ +
Sbjct: 28 LYIGWFGVLMIPTLLTATSVFIIALIAAPPVDIDGIREPVSGSLLYGNNIISRAIIPTSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W + + W GG + + LH G+ + R+ EL+ + +RP+ A
Sbjct: 88 AIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVACYRGRELELSFPLGMRPWIA 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+A+ P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAG
Sbjct: 145 VAYPAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQADHNILMHPFHMLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVA 261
V G +L A+HG+ +L E + + + Q EET+++V A+ ++ ++ +
Sbjct: 205 VFGGSLFSAMHGSRGTPSLTRETTENESANEGYRFGQEEETHNIVAAHGYFGRLTFQYAS 264
Query: 262 FSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
F+N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 265 FNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
>sp|P24625|PSBA_ANTSP PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S32577 photosystem II protein D1 precursor - red alga (Antithamnion sp.)
emb|CAA39049.1| (X55364) D1 protein [Antithamnion sp.]
Length = 360
Score = 149 bits (373), Expect = 5e-35
Identities = 81/280 (28%), Positives = 145/280 (50%), Gaps = 14/280 (5%)
Query: 29 VFVGWSGLLLFPCAYFALGGW----FTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPAN 84
+++GW G+++ P A + F +A S L G N ++ A+ +
Sbjct: 28 LYIGWFGVVMIPTLLTATSVFIIACFAAPPVDIDGIREPVAGSLLYGNNIISGAIIPSSA 87
Query: 85 SLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNA 144
++ +W W GG + + LH G+ ++ R++E + + +RP+ +
Sbjct: 88 AIGIHFYPIW---EAASLDEWLYNGGPYQLIVLHFLLGVCCYIGREWEFSYRLGMRPWIS 144
Query: 145 IAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAG 204
+AF+ P+ +VFL+YP+GQ + G++ F F+L FQ HN ++P H +GVAG
Sbjct: 145 VAFTAPVVAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPLHQLGVAG 204
Query: 205 VLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--G 259
V G +L A+HG+ V ++L + + AN F Q EETY++V A+ ++ ++
Sbjct: 205 VFGGSLFSAMHGSLVTSSLIRETTENESANNGYKFG--QEEETYNIVAAHGYFGRLIFQY 262
Query: 260 VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
+F+N R LHFF+ PV G+W +++ V +A NL ++F
Sbjct: 263 ASFNNSRSLHFFLGLWPVVGIWFTSMSVSTMAFNLNGFNF 302
>gb|AAB61276.1| (U96632) D1 protein, photosystem II [Ludisia discolor]
Length = 275
Score = 148 bits (370), Expect = 1e-34
Identities = 77/239 (32%), Positives = 134/239 (55%), Gaps = 6/239 (2%)
Query: 64 LASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGL 123
++ S L G N ++ A+ + ++ +W + + W GG + + LH G+
Sbjct: 28 VSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGV 84
Query: 124 IGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFI 183
+M ++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G+ F F+
Sbjct: 85 ACYMGCEWELSFRLGMRPWIAVAYSAPVAAAAAVFLIYPVGQGSFSDGMPLGIXGTFNFM 144
Query: 184 LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAE 242
+ FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + + + Q
Sbjct: 145 IVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEG 204
Query: 243 ETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
ETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ + NL ++F
Sbjct: 205 ETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTIXFNLXGFNF 263
>gb|AAF89986.1|AF206712_1 (AF206712) PSII D1 reaction center protein [Thoracosphaera heimii]
Length = 271
Score = 148 bits (369), Expect = 1e-34
Identities = 79/239 (33%), Positives = 138/239 (57%), Gaps = 6/239 (2%)
Query: 64 LASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGL 123
++ S L G N ++ +V +N++ +W + + W GG + + LH G+
Sbjct: 2 VSGSLLYGNNIISGSVIPSSNAIGVHFYPVWEATSADE---WLYNGGSYQLIVLHFMLGV 58
Query: 124 IGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFI 183
IG++ R++E + + +RP+ +AFS P+A +VF++YP+GQ + G++ F F+
Sbjct: 59 IGWLGREWEFSFRLGMRPWIFVAFSAPVAAASAVFVVYPIGQGSFSDGMPLGISGTFNFM 118
Query: 184 LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRA-FNPTQAE 242
L FQ HN ++PF+++GV GV G +L A+HG+ V +TL + G +T + + Q
Sbjct: 119 LVFQAEHNILMHPFYILGVIGVFGGSLFSAMHGSLVSSTLTCETVGDSTLNSGYLFGQTF 178
Query: 243 ETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
ETYS+ +A+ ++ ++ +F+N R LHFF+ PV G+W +ALGV +A NL +F
Sbjct: 179 ETYSISSAHGYFGRLIFQYASFNNSRSLHFFLGAWPVLGIWFTALGVSTMAFNLNGLNF 237
>gb|AAB61275.1| (U96631) D1 protein, photosystem II [Acorus gramineus]
Length = 309
Score = 139 bits (347), Expect = 5e-32
Identities = 80/274 (29%), Positives = 137/274 (49%), Gaps = 10/274 (3%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPANSLAH 88
W G+L+ P A + G+ + S L G N ++ A+ + ++
Sbjct: 1 WFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGL 60
Query: 89 SLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFS 148
+W + + W GG + + LH G+ +M R++EL+ + +RP+ A
Sbjct: 61 HFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAXXXX 117
Query: 149 GPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGA 208
FLIYP+GQ + G++ F++ FQ HN ++PFHM+GVAGV G
Sbjct: 118 XXXXXXXXXFLIYPIGQGSFSDGMPLGISGTXNFMIVFQAEHNIXMHPFHMLGVAGVFGG 177
Query: 209 ALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVAFSNK 265
+L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++ +F+N
Sbjct: 178 SLFSAMHGSLVTSSLIRETTENXSANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNS 237
Query: 266 RWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 238 RSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 271
>gb|AAB61274.1| (U96630) D1 protein, photosystem II [Phoenix dactylifera]
Length = 303
Score = 136 bits (339), Expect = 4e-31
Identities = 76/241 (31%), Positives = 124/241 (50%), Gaps = 10/241 (4%)
Query: 64 LASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGL 123
++ S L G N ++ A+ + ++ +W + W GG + + LH G+
Sbjct: 34 VSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAAXVDE---WLYNGGPYELIVLHFLLGV 90
Query: 124 IGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFI 183
+M R++EL+ P+ A+A+S P+ SVFLIYP+GQ + G++ F F+
Sbjct: 91 ACYMGREWELSFRXXXSPWIAVAYSAPVGAATSVFLIYPIGQGSFSDGMPLGISGTFNFM 150
Query: 184 LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE---DGDGANTFRAFNPTQ 240
+ FQ HN ++PFHM+GVAGV G V ++L + + AN F Q
Sbjct: 151 IVFQAEHNILMHPFHMLGVAGVFGGXXXXXXXXXLVTSSLIRETTENESANAGYRFG--Q 208
Query: 241 AEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYD 298
ETY++V A+ ++ ++ +F N R LHFF+ PV G+W +ALG+ +A NL +
Sbjct: 209 EGETYNIVAAHGYFGRLIFQYASFHNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFX 268
Query: 299 F 299
F
Sbjct: 269 F 269
>gb|AAD49557.1| (AF107784) PsbA [Trichodesmium sp. IMS101]
Length = 228
Score = 125 bits (311), Expect = 8e-28
Identities = 71/230 (30%), Positives = 118/230 (50%), Gaps = 8/230 (3%)
Query: 30 FVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL----ASSYLEGCNFLTAAVSTPANS 85
+VGW G+L+ P A + G+ A S + G N ++ AV +N+
Sbjct: 1 YVGWFGVLMIPTLLTATICYIIAFVAAPPVDIDGIREPVAGSLMFGNNIISGAVVPSSNA 60
Query: 86 LAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAI 145
+ +W W GG + V H G+ +M R++EL+ + +RP+ +
Sbjct: 61 IGLHFYPIW---EAASLDEWLYNGGPYQLVIFHFLIGIFTYMGREWELSYRLGMRPWICV 117
Query: 146 AFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGV 205
A+S P+A +VFLIYP+GQ + G++ F F++ FQ HN ++PFHM+GVAGV
Sbjct: 118 AYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGV 177
Query: 206 LGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFW 254
G +L A+HG+ V ++L E + + + Q EETY++V A+ ++
Sbjct: 178 FGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIVAAHGYF 227
>gb|AAA85914.1| (L36958) photosystem II reaction center protein D2 [Synechocystis
sp.]
Length = 68
Score = 120 bits (297), Expect = 4e-26
Identities = 53/69 (76%), Positives = 60/69 (86%), Gaps = 1/69 (1%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60
MTIA+G+ E FD++DDWL+RDRFVF+GWSGLLLFPCA+ ALGGW TGTTFVTSWY
Sbjct: 1 MTIAVGR-APVERGWFDVLDDWLKRDRFVFIGWSGLLLFPCAFMALGGWLTGTTFVTSWY 59
Query: 61 THGLASSYL 69
THGLASSYL
Sbjct: 60 THGLASSYL 68
>emb|CAA10627.1| (AJ132264) PSII D1 reaction-centre protein [Skeletonema costatum]
Length = 205
Score = 118 bits (293), Expect = 1e-25
Identities = 57/147 (38%), Positives = 92/147 (61%), Gaps = 3/147 (2%)
Query: 156 SVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIH 215
+VFL+YP+GQ + G++ F F+L FQ HN ++PFHM GVAGV G +L A+H
Sbjct: 1 AVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMH 60
Query: 216 GATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFM 272
G+ V ++L E + +T + Q EETY++V A+ ++ ++ +F+N R LHFF+
Sbjct: 61 GSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFL 120
Query: 273 LFVPVTGLWMSALGVVGLALNLRAYDF 299
PV G+W++A+G+ +A NL ++F
Sbjct: 121 ALWPVLGIWLTAMGISTMAFNLNGFNF 147
>pir||S24992 photosystem II protein D1 - common sunflower chloroplast
(fragment)
Length = 187
Score = 102 bits (252), Expect = 7e-21
Identities = 49/128 (38%), Positives = 80/128 (62%), Gaps = 3/128 (2%)
Query: 175 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTF 233
G++ F F++ FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + +
Sbjct: 9 GISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN 68
Query: 234 RAFNPTQAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLA 291
+ Q EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A
Sbjct: 69 EGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMA 128
Query: 292 LNLRAYDF 299
NL ++F
Sbjct: 129 FNLNGFNF 136
>pir||S48682 D1 protein - Spinach
Length = 232
Score = 97.1 bits (238), Expect = 3e-19
Identities = 43/105 (40%), Positives = 70/105 (65%)
Query: 122 GLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFR 181
G+ +M R++EL+ + +RP+ A+A+S P+A +VFLIYP+GQ + G++ F
Sbjct: 60 GVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFN 119
Query: 182 FILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
F++ FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L +
Sbjct: 120 FMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRE 164
>gb|AAF89985.1|AF206711_1 (AF206711) PSII D1 reaction center protein [Protoceratium
reticulatum]
Length = 151
Score = 93.2 bits (228), Expect = 5e-18
Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 3/121 (2%)
Query: 182 FILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFR-AFNPTQ 240
F+L FQ HN ++PFH++GVAGV G +L A+HG+ V ++L + G + +N Q
Sbjct: 2 FMLVFQAEHNILMHPFHILGVAGVFGGSLFSAMHGSLVTSSLLAESPGDVSLNIGYNFGQ 61
Query: 241 AEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYD 298
+ETYS+ A+ ++ ++ +F+N R LHFF+ PV G+W +ALGV +A NL +
Sbjct: 62 EDETYSISAAHGYFGRLIFQYASFNNSRSLHFFLGGWPVIGIWFTALGVSTMAFNLNGLN 121
Query: 299 F 299
F
Sbjct: 122 F 122
>pir||C31183 photosystem II protein D1 - barley chloroplast (fragment)
Length = 109
Score = 77.6 bits (188), Expect = 2e-13
Identities = 38/101 (37%), Positives = 63/101 (61%), Gaps = 3/101 (2%)
Query: 175 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTF 233
G++ F F++ FQ HN ++PFHM+GVAGV G +L A+HG+ V ++L E + +
Sbjct: 6 GISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESAN 65
Query: 234 RAFNPTQAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFM 272
+ Q EETY++V A+ ++ ++ +F+N R LHFF+
Sbjct: 66 EGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFL 106
>sp|P09438|RCEM_CHLAU REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTHETIC REACTION CENTER M
SUBUNIT)
pir||WNJXM photosynthetic reaction center chain M - Chloroflexus aurantiacus
emb|CAA30694.1| (X07847) subunit M (AA 1-307) [Chloroflexus aurantiacus]
emb|CAA33103.1| (X14979) reaction center protein [Chloroflexus aurantiacus]
Length = 307
Score = 71.4 bits (172), Expect = 2e-11
Identities = 49/183 (26%), Positives = 83/183 (44%), Gaps = 14/183 (7%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + + + A+++ ++PY A F+G IA+++ +++I P+ W
Sbjct: 102 GGWWLIATFFLTVSIFAWYMHIYTRAKALGIKPYLAYGFTGAIALYLVIYIIRPVWMGDW 161
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
AP+ G+ A+ + + N+ NPFHM+ + +LG+ LL A+H T+
Sbjct: 162 SEAPAHGIKALLDWTNNVSVRYGNFYYNPFHMLSIFFLLGSTLLLAMHAGTIWAL----- 216
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGV---AFSNKRWLHFFMLFVPVTGLWMSA 284
+ +N QA T A FW G A+S W +F +TG A
Sbjct: 217 EKYAAHEEWNEIQAPGT-GTERAQLFWRWCMGFNANAYSIHLWAFWFAWLCGITG----A 271
Query: 285 LGV 287
LGV
Sbjct: 272 LGV 274
>emb|CAA73828.1| (Y13398) D1 protein [Porphyra linearis]
Length = 97
Score = 69.1 bits (166), Expect = 9e-11
Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 201 GVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259
GVAGV G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++
Sbjct: 1 GVAGVFGGSLFSAMHGSLVTSSLIRETSENESANYGYKFGQEEETYNIVAAHGYFGRLIF 60
Query: 260 --VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNL 294
+F+N R LHFF+ PV G+W++AL V +A NL
Sbjct: 61 QYASFNNSRSLHFFLGLWPVVGIWLTALSVSTMAFNL 97
>prf||1703253B photosyn reaction center M [Chloroflexus aurantiacus]
Length = 307
Score = 67.9 bits (163), Expect = 2e-10
Identities = 47/183 (25%), Positives = 81/183 (43%), Gaps = 14/183 (7%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + + + A+++ ++PY A F+G IA+++ +++I P+ W
Sbjct: 102 GGWWLIATFFLTVSIFAWYMHIYTRAKALGIKPYLAYGFTGAIALYLVIYIIRPVWMGDW 161
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
AP+ G+ A+ + + N+ NPFHM+ + +LG+ A+H T+
Sbjct: 162 SEAPAHGIKALLDWTNNVSVRYGNFYYNPFHMLSIFFLLGSTFFFAMHAGTIWAL----- 216
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGV---AFSNKRWLHFFMLFVPVTGLWMSA 284
+ +N QA T A FW G A+S W +F +TG A
Sbjct: 217 EKYAAHEEWNEIQAPGT-GTERAQLFWRWCMGFNANAYSIHLWAFWFAWLCGITG----A 271
Query: 285 LGV 287
LGV
Sbjct: 272 LGV 274
>emb|CAA10635.1| (AJ132266) PSII D2 reaction-centre protein [Skeletonema costatum]
Length = 44
Score = 66.7 bits (160), Expect = 4e-10
Identities = 29/45 (64%), Positives = 36/45 (79%), Gaps = 2/45 (4%)
Query: 1 MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFA 45
MTIA+G+ E LFD+ DDWL++DRFVF+GWSG+LLFP AY A
Sbjct: 1 MTIAIGQ--NQERGLFDLCDDWLKKDRFVFIGWSGILLFPTAYLA 43
>emb|CAA75354.1| (Y15074) D1 protein [Haslea ostrearia]
Length = 95
Score = 66.0 bits (158), Expect = 7e-10
Identities = 34/95 (35%), Positives = 58/95 (60%), Gaps = 3/95 (3%)
Query: 202 VAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG- 259
VAGV G +L A+HG+ V ++L E + + + Q EETY++V A+ ++ ++
Sbjct: 1 VAGVFGGSLFSAMHGSLVTSSLIRETTESESVNYGYKFGQEEETYNIVAAHGYFGRLIFQ 60
Query: 260 -VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALN 293
+F+N R LHFF+ PV G+W++++GV +A N
Sbjct: 61 YASFNNSRALHFFLALWPVVGIWLTSMGVSTMAFN 95
>sp|P10718|RCEM_RHORU REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTHETIC REACTION CENTER M
SUBUNIT)
pir||B28170 reaction center protein chain M - Rhodospirillum rubrum
gb|AAA26465.1| (J03731) photoreaction center M subunit [Rhodospirillum rubrum]
Length = 306
Score = 65.2 bits (156), Expect = 1e-09
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 17/249 (6%)
Query: 46 LGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRW 105
+G + GTT V S G + + G N L + +P L P A +
Sbjct: 47 IGPIYLGTTGVLS-LVFGFFAIEIIGFNLLASVNWSPMEFGRQFFWLGLEPPAAEYGLGF 105
Query: 106 CQL--GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPL 163
L GG W ++ + +R + AR++++ + A AF+ I +F+S+ I PL
Sbjct: 106 APLAEGGWWQIAGFFLTTSILLWWVRMYRRARALKMGTHTAWAFASAIFLFLSLGFIRPL 165
Query: 164 GQSGWFFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENT 222
+ + FG+ + F + N+ NPFHM+ +A + G+ALL A+HGAT+
Sbjct: 166 LMGNFSESVPFGIFPHLEWTNSFSLNYGNFFYNPFHMLSIAFLYGSALLSAMHGATILAV 225
Query: 223 LFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG---VAFSNKRWLHFFMLFVPVTG 279
GD T AE A FW G S RW +F + TG
Sbjct: 226 SRLGGDREVEQITDRGTAAER------AALFWRWTMGFNATMESIHRWAWWFAVLCTFTG 279
Query: 280 LWMSALGVV 288
A+G++
Sbjct: 280 ----AIGIL 284
>emb|CAA75405.1| (Y15137) D1 protein [Skeletonema costatum]
Length = 89
Score = 64.8 bits (155), Expect = 2e-09
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 201 GVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG 259
GVAGV G +L A+HG+ V ++L E + +T + Q EETY++V A+ ++ ++
Sbjct: 1 GVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIF 60
Query: 260 --VAFSNKRWLHFFMLFVPVTGLWMSALG 286
+F+N R LHFF+ PV G W++A+G
Sbjct: 61 QYASFNNSRALHFFLALWPVLGSWLTAMG 89
>gb|AAF08827.1| (AF193066) photosystem II Q(B) protein [Bassia scoparia]
Length = 115
Score = 62.8 bits (150), Expect = 6e-09
Identities = 37/96 (38%), Positives = 58/96 (59%), Gaps = 7/96 (7%)
Query: 209 ALLCAIHGATVENTLFED---GDGANTFRAFNPTQAEETYSMVTANRFWSQ-IFGVA-FS 263
+L A+HG+ V ++L + + AN F Q EETY++V A+ ++ + IF A F+
Sbjct: 2 SLFSAMHGSLVTSSLIRETTENESANEGYRFG--QEEETYNIVAAHGYFGRLIFQYAGFN 59
Query: 264 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 60 NSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 95
>dbj|BAA25552.1| (AB005218) M subunit of photosynthetic reaction center complex
[Acidiphilium rubrum]
dbj|BAA25559.1| (AB005219) M subunit of photosynthetic reaction center complex
[Acidiphilium angustum]
Length = 326
Score = 62.5 bits (149), Expect = 8e-09
Identities = 62/244 (25%), Positives = 97/244 (39%), Gaps = 21/244 (8%)
Query: 46 LGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRW 105
+G + GT + S T +A + G N L + P + L P A R
Sbjct: 48 IGPIYLGTLGIASIATFVIAFEII-GLNMLASVNWNPIRFVRDLPWLALEPPAPSYGLRL 106
Query: 106 --CQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPL 163
Q GG W LI + R + +R + + + A AF+ I +++ + I PL
Sbjct: 107 PPLQHGGWWLMAGFFLTTSLILWWARIYRRSRQLGIGTHTAWAFASAIWLYLVLGFIRPL 166
Query: 164 GQSGWFFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENT 222
W AP FG+ + + F + N +PFHM+ + + G+ LL A+HGAT+
Sbjct: 167 LMGSWGEAPPFGIFPHLDWTVSFSLRYGNLYYDPFHMLSIVFLYGSVLLFAMHGATI--- 223
Query: 223 LFEDGDGANTFRAFNPTQAEETYSMVTANR----FWSQIFG---VAFSNKRWLHFFMLFV 275
R + E+T TA+ FW G S RW +F +
Sbjct: 224 -------LAVSRFGGEREVEQTVDRGTASERAALFWRWTMGFNATMESIHRWAWWFAVLT 276
Query: 276 PVTG 279
+TG
Sbjct: 277 TLTG 280
>gb|AAB67247.1| (AF018955) reaction center M subunit [Ectothiorhodospira
shaposhnikovii]
Length = 324
Score = 61.7 bits (147), Expect = 1e-08
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 110 GLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWF 169
G W ++ + +R + AR+ + + A AF+ I +++S+ P+ W
Sbjct: 112 GWWLMAGFFLTTSILLWWVRMYRRARAWNMGTHVAWAFAAAIFLYLSLGFFRPILMGDWS 171
Query: 170 FAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGD 228
A FG+ + F + N NPFHM+ +A + G+A+L A+HGATV GD
Sbjct: 172 EAVPFGIFPHLDWTTAFSLKYGNLYYNPFHMLCIAFLYGSAVLFAMHGATVLAVGRYGGD 231
Query: 229 GANTFRAFNPTQAEETYSMVTANRFWSQIFG---VAFSNKRWLHFFMLFVPVTG 279
G T ++ A FW G S RW +F + VP+TG
Sbjct: 232 GELEQITDRGTASDR------AMLFWRWTMGFNATMESIHRWGWWFAVLVPITG 279
>gb|AAD45367.1|AF161592_1 (AF161592) photosynthetic reaction centre L subunit [Blastochloris
viridis]
Length = 241
Score = 60.5 bits (144), Expect = 3e-08
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + I + LR+ E++R + + + IAF PI +F+ + + P+ GW
Sbjct: 51 GGFWQAITVCAIGAFISWQLREVEISRKLGMGWHVPIAFGVPIFMFLVLQVFRPILMGGW 110
Query: 169 FFAPSFGVAAIFRFILFFQGFH--NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
FA +G+ + ++ F GF NW NP HM V+ + A+ +HG + ++
Sbjct: 111 GFAFPYGILSHLDWVNNF-GFQYLNWHYNPGHMSSVSFLFANAMALGLHGGLI-LSVANP 168
Query: 227 GDG 229
GDG
Sbjct: 169 GDG 171
>gb|AAD45366.1|AF161591_1 (AF161591) photosynthetic reaction centre L subunit [Blastochloris
sulfoviridis]
Length = 237
Score = 60.5 bits (144), Expect = 3e-08
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + I + LR+ E++R + + + IAF PI +F+ + + P+ GW
Sbjct: 47 GGFWQAITVCAIGAFISWQLREVEISRKLGMGWHVPIAFGVPIFMFLVLQVFRPILMGGW 106
Query: 169 FFAPSFGVAAIFRFILFFQGFH--NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
FA +G+ + ++ F GF NW NP HM V+ + A+ +HG + ++
Sbjct: 107 GFAFPYGILSHLDWVNNF-GFQYLNWHYNPGHMSSVSFLFANAMALGLHGGLI-LSVANP 164
Query: 227 GDG 229
GDG
Sbjct: 165 GDG 167
>dbj|BAA22797.1| (D50654) photosynthetic reaction center L subunit [Phaeospirillum
molischianum]
Length = 274
Score = 60.5 bits (144), Expect = 3e-08
Identities = 43/182 (23%), Positives = 83/182 (44%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W F+ + + + LRQ E+AR + + + AFS I +V++ +I P+ W
Sbjct: 84 GGFWQFITICATGAFVSWALRQVEIARKLGMGLHVPFAFSFAILAYVTLVVIRPVLMGAW 143
Query: 169 FFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
+ +G+ + ++ + +Q H + NP HM+ ++ AL A+HG +
Sbjct: 144 GYGFPYGIFSHLDWVSNVGYQFLH-FHYNPAHMIAISFFFTNALALAMHGGLI------- 195
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
A NP + E + + F+ + G + S +H LF+ ++ + SA+
Sbjct: 196 ------LSASNPGKGEVVKAAEHEDTFFRDVVGYS-SGALAIHRIGLFLAISAAFWSAVC 248
Query: 287 VV 288
+V
Sbjct: 249 IV 250
>gb|AAB41577.1| (U51298) photosynthetic reaction center M subunit [Rubrivivax
gelatinosus]
Length = 325
Score = 60.5 bits (144), Expect = 3e-08
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W L ++ + +R + AR++ + + A AF+ I +++ + I P+ W
Sbjct: 113 GGWWLMAGLFLTISILLWWVRMYTRARALGMGTHVAWAFAAAIWLYLVLGFIRPVLMGSW 172
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
A FG+ + F + N NPFH + +A + GA LL A+HGAT+ G
Sbjct: 173 SEAVPFGIFPHLDWTAAFSLRYGNLFYNPFHALSIAFLYGATLLFAMHGATILAVSRFGG 232
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFG---VAFSNKRWLHFFMLFVPVTG 279
+ A T +E A FW G S RW +F + P+ G
Sbjct: 233 ERELEQIADRGTASER------AQLFWRWTMGFNATTESIHRWAWWFAVLCPLCG 281
>sp|P51761|RCEM_RHOGE REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTHETIC REACTION CENTER M
SUBUNIT)
pir||F49964 photosynthetic reaction center complex M subunit, PufM -
Rhodocyclus gelatinosus
pir||T50890 photosynthetic reaction center complex chain M [imported] -
Rubrivivax gelatinosus
dbj|BAA04101.1| (D16822) photosynthetic reaction center M subunit [Rubrivivax
gelatinosus]
dbj|BAA94043.1| (AB034704) M subunit of photosynthetic reaction center complex
[Rubrivivax gelatinosus]
Length = 325
Score = 60.5 bits (144), Expect = 3e-08
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W L ++ + +R + AR++ + + A AF+ I +++ + I P+ W
Sbjct: 113 GGWWLMAGLFLTISILLWWVRMYTRARALGMGTHVAWAFAAAIWLYLVLGFIRPVLMGSW 172
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
A FG+ + F + N NPFH + +A + GA LL A+HGAT+ G
Sbjct: 173 SEAVPFGIFPHLDWTAAFSLRYGNLFYNPFHALSIAFLYGATLLFAMHGATILAVSRFGG 232
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFG---VAFSNKRWLHFFMLFVPVTG 279
+ A T +E A FW G S RW +F + P+ G
Sbjct: 233 ERELEQIADRGTASER------AQLFWRWTMGFNATTESIHRWAWWFAVLCPLCG 281
>dbj|BAA26099.1| (AB013379) M subunit of photosynthetic reaction center
[Acidiphilium acidophilum]
Length = 256
Score = 60.1 bits (143), Expect = 4e-08
Identities = 36/114 (31%), Positives = 57/114 (49%), Gaps = 1/114 (0%)
Query: 107 QLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQS 166
Q GG W L LI + R + +R + + + A AF+ I +F+ + I PL
Sbjct: 110 QHGGWWLLAGLFLTSSLILWWARIYRRSRQLGIGTHTAWAFASGIWLFLVLGFIRPLLMG 169
Query: 167 GWFFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
W AP FG+ + + F + N +PFHM+ + + G+ LL A+HGAT+
Sbjct: 170 SWGEAPPFGIFPHLDWTVSFSLRYGNLYYDPFHMLSIVFLYGSVLLFAMHGATI 223
>gb|AAD45365.1|AF161590_1 (AF161590) photosynthetic reaction centre L subunit [Blastochloris
sulfoviridis]
Length = 243
Score = 59.3 bits (141), Expect = 7e-08
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + I + LR+ E++R + + + IAF PI +F+ + + P+ GW
Sbjct: 53 GGFWQAITVCAIGAFISWQLREVEISRKLGMGWHVPIAFGVPIFMFLVLQVFRPILMGGW 112
Query: 169 FFAPSFGVAAIFRFILFFQGFH--NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
FA +G+ + ++ F GF NW NP HM V+ + A+ +HG + ++
Sbjct: 113 GFAFPYGILSHLDWVNNF-GFQYLNWHYNPGHMSSVSFLFCNAMALGLHGGLI-LSVANP 170
Query: 227 GDG 229
GDG
Sbjct: 171 GDG 173
>dbj|BAA25566.1| (AB005222) M subunit of photosynthetic reaction center complex
[Acidiphilium organovorum]
Length = 252
Score = 59.3 bits (141), Expect = 7e-08
Identities = 34/112 (30%), Positives = 56/112 (49%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W L+ + LR + ++ + L + A AF+ I +F+ + I PL W
Sbjct: 112 GGWWLLAGFFLTTSLLLWWLRVYRRSKQLGLGTHTAWAFASAIWLFLVLGFIRPLLMGSW 171
Query: 169 FFAPSFGVAAIFRF-ILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
AP FG+ + + F + N +PFHM+ + + G+ LL A+HGAT+
Sbjct: 172 GEAPPFGIFPHLDWTVAFSLRYGNLYYDPFHMLSIVFLYGSVLLFAMHGATI 223
>dbj|BAA25564.1| (AB005221) M subunit of photosynthetic reaction center complex
[Acidiphilium multivorum]
Length = 254
Score = 59.3 bits (141), Expect = 7e-08
Identities = 34/112 (30%), Positives = 56/112 (49%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W L+ + LR + ++ + L + A AF+ I +F+ + I PL W
Sbjct: 112 GGWWLLAGFFLTTSLLLWWLRVYRRSKQLGLGTHTAWAFASAIWLFLVLGFIRPLLMGSW 171
Query: 169 FFAPSFGVAAIFRF-ILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
AP FG+ + + F + N +PFHM+ + + G+ LL A+HGAT+
Sbjct: 172 GEAPPFGIFPHLDWTVAFSLRYGNLYYDPFHMLSIVFLYGSVLLFAMHGATI 223
>dbj|BAA76947.1| (AB020784) pufL [Rhodovulum sulfidophilum]
Length = 284
Score = 58.9 bits (140), Expect = 1e-07
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW F+ L + + LR+ E+ R + + + IAF I ++++ + P+ W
Sbjct: 84 GGLWQFITLCAIGAFVSWALREVEICRKLGIGYHIPIAFGMAIFAYLTLEVFRPMLMGAW 143
Query: 169 FFAPSFGVAAIFRFILFFQGFH--NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
A +G+ ++ G+H ++ NPFHM+GV+ L A+HG +
Sbjct: 144 GHAFPYGIFTHLDWV-SNTGYHYLHFHYNPFHMLGVSLFFATCLALALHGGLI------- 195
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
A NP + EE + + F+ + G + +H + + ++ SA+
Sbjct: 196 ------LSACNPEKGEEAKTPDHEDSFFRDLIGYSIGT-LGIHRAGWLLAINAVFFSAVC 248
Query: 287 VV 288
++
Sbjct: 249 II 250
>sp|Q01366|PSBA_PHAVU PHOTOSYSTEM Q(B) PROTEIN (32 KD THYLAKOID MEMBRANE PROTEIN)
(PHOTOSYSTEM II PROTEIN D1)
pir||S25494 photosystem II protein D1 - kidney bean chloroplast (fragment)
emb|CAA48184.1| (X68048) Photosystem II 32kDa Q-B protein [Phaseolus vulgaris]
Length = 147
Score = 58.9 bits (140), Expect = 1e-07
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 209 ALLCAIHGATVENTLFED---GDGANTFRAFNPTQAEETYSMVTANRFWSQIFG--VAFS 263
+L A+HG+ V ++L + + N F + EETY++V A+ ++ ++ +F+
Sbjct: 3 SLFSAMHGSLVTSSLIREPTVNESPNEGYRFG--REEETYNIVPAHGYFDRLIYQYASFN 60
Query: 264 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299
N R LHFF+ PV G+W +ALG+ +A NL ++F
Sbjct: 61 NSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 96
>gb|AAG42645.1| (AF182374) photosynthetic reaction center M subunit [Bradyrhizobium
sp. ORS278]
Length = 308
Score = 58.6 bits (139), Expect = 1e-07
Identities = 50/181 (27%), Positives = 77/181 (41%), Gaps = 18/181 (9%)
Query: 107 QLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQS 166
Q GG W ++ + R + AR++ L + + AF+ I +++ + I P+
Sbjct: 111 QEGGWWLMAGFFLTTSILLWWARTYRRARALGLGTHVSWAFASAIWLYLVLGFIRPIFMG 170
Query: 167 GWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFE 225
W A FG+ + F H N NPFHM+ +A + G+ALL A+HGATV
Sbjct: 171 SWSEAVPFGIFPHLDWTNNFSITHGNLFYNPFHMLSIAFLYGSALLFAMHGATVLAISRY 230
Query: 226 DGDGANTFRAFNPTQAEETYSMVTANR----FWSQIFG---VAFSNKRWLHFFMLFVPVT 278
G+ + E+ TA FW G A S RW +F + +T
Sbjct: 231 GGE----------RELEQIVDRGTAFERGALFWRWTMGFNATAESIHRWAWWFAVLCTLT 280
Query: 279 G 279
G
Sbjct: 281 G 281
>dbj|BAA25562.1| (AB005220) M subunit of photosynthetic reaction center complex
[Acidiphilium cryptum]
Length = 278
Score = 58.6 bits (139), Expect = 1e-07
Identities = 33/112 (29%), Positives = 56/112 (49%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W L+ + +R + ++ + L + A AF+ I +F+ + I PL W
Sbjct: 112 GGWWLLAGFFLTTSLLLWWMRVYRRSKQLGLGTHTAWAFASAIWLFLVLGFIRPLLMGSW 171
Query: 169 FFAPSFGVAAIFRF-ILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
AP FG+ + + F + N +PFHM+ + + G+ LL A+HGAT+
Sbjct: 172 GEAPPFGIFPHLDWTVAFSLRYGNLYYDPFHMLSIVFLYGSVLLFAMHGATI 223
>dbj|BAB19668.1| (AB028938) photosynthetic reaction center M subunit [Roseateles
depolymerans]
Length = 326
Score = 58.2 bits (138), Expect = 2e-07
Identities = 60/257 (23%), Positives = 98/257 (37%), Gaps = 33/257 (12%)
Query: 29 VFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAH 88
+++GW GL C + A+ + G N L + P +
Sbjct: 51 IYLGWLGLCSLICGFIAIE---------------------IIGLNMLASVNWNPIQFVRQ 89
Query: 89 S--LLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIA 146
L L P A G GG W L ++ + +R + AR + + + A A
Sbjct: 90 LPWLALEPPPPANGLHLPPLNQGGWWLLAGLFLTTSILLWWVRMYRRARKLGMGTHVAWA 149
Query: 147 FSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGV 205
F+ I +++ + +I P+ + A FG+ + F + N NPFHM+ + +
Sbjct: 150 FAAAIWLYLVLGIIRPVLMGSFGEAVPFGIFPHLDWTAAFSLRYGNLFYNPFHMLSIVFL 209
Query: 206 LGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFG---VAF 262
G+ LL A+HGAT+ G+ T +E A FW G
Sbjct: 210 YGSTLLFAMHGATILAVSRFGGEREIEQITDRGTASER------AALFWRWTMGFNATME 263
Query: 263 SNKRWLHFFMLFVPVTG 279
S RW +F + P+TG
Sbjct: 264 SIHRWAWWFAVLCPLTG 280
>dbj|BAA33014.1| (AB017041) photosynthetic reaction center L subunit [Blastochloris
sulfoviridis]
Length = 245
Score = 58.2 bits (138), Expect = 2e-07
Identities = 37/127 (29%), Positives = 61/127 (47%), Gaps = 4/127 (3%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + +MLR+ E++R + + + +AF PI +F + + P+ GW
Sbjct: 55 GGFWQAITVCALGAFFSWMLREVEISRKLGMGWHVPLAFCVPIFMFCVLQVFRPILMGGW 114
Query: 169 FFAPSFGVAAIFRFILFFQGFH--NWTLNPFHMMGVAGVLGAALLCAIHGATVEN-TLFE 225
FA +G+ + ++ F GF NW NP HM V+ + A +HG + + T
Sbjct: 115 GFAFPYGILSHLDWVNNF-GFQYLNWHYNPGHMSSVSFLFANAAALGLHGGLILSVTNPG 173
Query: 226 DGDGANT 232
DGD T
Sbjct: 174 DGDRVKT 180
>sp|P51763|RCEM_CHRVI REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTHETIC REACTION CENTER M
SUBUNIT)
dbj|BAA32741.1| (AB011811) M subunit of reaction center complex [Allochromatium
vinosum]
Length = 325
Score = 58.2 bits (138), Expect = 2e-07
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W ++ + +R ++ A ++ + + + AF+ I ++S+ I P+ W
Sbjct: 112 GGWWLMAGFFLTMSILLWWVRTYKRAEALGMSQHLSWAFAAAIFFYLSLGFIRPVMMGSW 171
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
A FG+ + F + N NPFHM+ +A + G+ALL A+HGAT+
Sbjct: 172 AEAVPFGIFPHLDWTAAFSIRYGNLYYNPFHMLSIAFLYGSALLFAMHGATI 223
>dbj|BAA21083.1| (D50647) photosynthetic reaction center M subunit [Allochromatium
vinosum]
Length = 257
Score = 58.2 bits (138), Expect = 2e-07
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W ++ + +R ++ A ++ + + + AF+ I ++S+ I P+ W
Sbjct: 112 GGWWLMAGFFLTMSILLWWVRTYKRAEALGMSQHLSWAFAAAIFFYLSLGFIRPVMMGSW 171
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
A FG+ + F + N NPFHM+ +A + G+ALL A+HGAT+
Sbjct: 172 AEAVPFGIFPHLDWTAAFSIRYGNLYYNPFHMLSIAFLYGSALLFAMHGATI 223
>pdb|1EYS|M Chain M, Crystal Structure Of Photosynthetic Reaction Center From A
Thermophilic Bacterium, Thermochromatium Tepidum
Length = 324
Score = 57.8 bits (137), Expect = 2e-07
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W L ++ + +R ++ A ++ + + + AF+ I ++ + I P+ W
Sbjct: 111 GGWWLIAGLFLTLSILLWWVRTYKRAEALGMSQHLSWAFAAAIFFYLVLGFIRPVMMGSW 170
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
A FG+ + F + N NPFHM+ +A + G+ALL A+HGAT+ + G
Sbjct: 171 AKAVPFGIFPHLDWTAAFSIRYGNLYYNPFHMLSIAFLYGSALLFAMHGATILSVSRFGG 230
Query: 228 D 228
D
Sbjct: 231 D 231
>sp|P51751|RCEM_RHOPH REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTHETIC REACTION CENTER M
SUBUNIT)
pir||T10821 photosynthetic reaction center M - Rhodospirillum photometricum
(fragment)
dbj|BAA09330.1| (D50681) photosynthetic reaction center M subunit [Rhodospirillum
photometricum]
Length = 256
Score = 57.8 bits (137), Expect = 2e-07
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W L+ + + AR++ L + A AF+ + +++++ I PL W
Sbjct: 111 GGWWQITGFFLTMSLLVWWWHVYNRARALGLGTHMAWAFASALFLYLTLGFIRPLLLGNW 170
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
A FG+ A + F + N NPFHM+ +A + G+A+L A+HGAT+
Sbjct: 171 GEAVPFGLFAHLDWTAAFSLRYGNLYYNPFHMLSIAFLYGSAVLFAMHGATI 222
>sp|P11847|RCEM_RHOCA REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTHETIC REACTION CENTER M
SUBUNIT)
pir||A28771 reaction center protein chain M - Rhodobacter capsulatus
emb|CAA77555.1| (Z11165) 307 aa (34.5 kD) reaction center M protein [Rhodobacter
capsulatus]
gb|AAA26175.1| (K01184) reaction center protein M subunit [Rhodobacter capsulatus]
Length = 307
Score = 57.8 bits (137), Expect = 2e-07
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG+W +L A +I + +R + A + + + A AF I ++ + P+ W
Sbjct: 111 GGVWQIASLFMAISVIAWWVRVYTRADQLGMGKHMAWAFLSAIWLWSVLGFWRPILMGSW 170
Query: 169 FFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAALLCAIHGATV 219
AP +G+ + + F H N NPFH + +A + G+ALL A+HGAT+
Sbjct: 171 SVAPPYGIFSHLDWTNQFSLDHGNLFYNPFHGLSIAALYGSALLFAMHGATI 222
>dbj|BAA22646.1| (D50651) photosynthetic reaction center M subunit [Rhodocyclus
tenuis]
Length = 257
Score = 57.4 bits (136), Expect = 3e-07
Identities = 34/112 (30%), Positives = 56/112 (49%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W ++ F +R + A ++ + + A AF+ I +++ + I P+ W
Sbjct: 112 GGWWLMAGFFLTLSILLFWVRTYRRAVALGMGTHVAWAFASAIWLYLVLGFIRPVMMGSW 171
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
A FG+ A + F + N +PFHM+ +A + GA LL A+HGATV
Sbjct: 172 SEAVPFGIFAHLDWTAAFSIRYGNLYYDPFHMLSIAFMYGATLLFAMHGATV 223
>sp|P26280|RCEL_ERYSP REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTHETIC REACTION CENTER L
SUBUNIT)
pir||WNBCL photosynthetic reaction center chain L - Erythrobacter sp. (strain
OCH114)
emb|CAA40818.1| (X57597) pufL [Erythrobacter sp.]
Length = 283
Score = 57.0 bits (135), Expect = 4e-07
Identities = 55/271 (20%), Positives = 94/271 (34%), Gaps = 41/271 (15%)
Query: 36 LLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95
LL F Y GG G W + V+T +L ++L+ WG
Sbjct: 3 LLSFERKYRVRGGTLVGGDLFDFWVGPFYVGFF---------GVTTAFFALLGTILIFWG 53
Query: 96 PEAQGDFTRWC-----------------QLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
QG F W GGLW + + I + LR+ E+ R +
Sbjct: 54 ASQQGTFNPWLINIAPPDLSYGLGLAPLLEGGLWQIITICATGAFISWALREVEICRKLG 113
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL-FFQGFHNWTLNPF 197
+ + F+ I ++++ + PL W +G+ + ++ + ++ NP
Sbjct: 114 MGYHVPFGFAAAIIAYMTLVIFRPLLMGAWGHGFPYGIFSHLDWVSNVGYAYLHFHYNPA 173
Query: 198 HMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 257
HM+ V L A+HG + A NP + EE + + F+
Sbjct: 174 HMLAVTLFFTTTLALALHGGLI-------------LSACNPEKGEEAKTPDHEDTFFRDF 220
Query: 258 FGVAFSNKRWLHFFMLFVPVTGLWMSALGVV 288
G + L GLW SA+ ++
Sbjct: 221 IGYSVGTLGIHRLGYLLAINAGLW-SAICII 250
>dbj|BAB19667.1| (AB028938) photosynthetic reaction center L subunit [Roseateles
depolymerans]
Length = 274
Score = 56.6 bits (134), Expect = 5e-07
Identities = 48/229 (20%), Positives = 91/229 (38%), Gaps = 34/229 (14%)
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRW-----------------CQLGGLWTFVALHGAF 121
V+T +L +LL++WG G + W GGLW + +
Sbjct: 37 VTTMFFTLVGTLLIVWGASQGGTWNLWRISIAPPDLKYGLGMAPLMEGGLWQLITVCAIG 96
Query: 122 GLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFR 181
+ + LR+ E+ R + + + AF+ I +V++ ++ P+ W +G+ +
Sbjct: 97 AFVSWALREVEICRKLGMGYHVPFAFAVAIFAYVTLVVVRPVLMGAWGHGFPYGIISHLD 156
Query: 182 FI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPT 239
++ +Q H + NP HM+ V+ ++HGA V A NP
Sbjct: 157 WVSNTGYQYLH-FHYNPAHMLAVSFFFATTFALSLHGALV-------------LSATNPA 202
Query: 240 QAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVV 288
E + N F+ G + +H LF+ ++ + SA+ +V
Sbjct: 203 PGEVVKTAEHENTFFRDAIGYSIGT-LGIHRLGLFLALSAGFWSAICIV 250
>dbj|BAA32549.1| (AB016989) photosynthetic reaction center L subunit [Roseobacter
denitrificans]
Length = 255
Score = 56.6 bits (134), Expect = 5e-07
Identities = 47/228 (20%), Positives = 85/228 (36%), Gaps = 32/228 (14%)
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWC-----------------QLGGLWTFVALHGAF 121
V+T +L ++L+ WG QG F W GGLW + +
Sbjct: 9 VTTAFFALLGTILIFWGASQQGTFNPWLINIAPPDLSYGLGLAPLLEGGLWQIITICATG 68
Query: 122 GLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFR 181
I + LR+ E+ R + + + F+ I ++++ + PL W +G+ +
Sbjct: 69 AFISWALREVEICRKLGMGYHVPFGFAAAIIAYMTLVIFRPLLMGAWGHGFPYGIFSHLD 128
Query: 182 FIL-FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQ 240
++ + ++ NP HM+ V L A+HG + A NP +
Sbjct: 129 WVSNVGYAYLHFHYNPAHMLAVTLFFTTTLALALHGGLI-------------LSACNPEK 175
Query: 241 AEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVV 288
EE + + F+ G + L GLW SA+ ++
Sbjct: 176 GEEAKTPDHEDTFFRDFIGYSVGTLGIHRLGYLLAINAGLW-SAICII 222
>dbj|BAA25901.1| (AB010873) photosynthetic reaction center L subunit
[Erythromicrobium ramosum]
Length = 244
Score = 56.6 bits (134), Expect = 5e-07
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 15/181 (8%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + ++LRQ E++R + + + IAFS + +VS+ +I PL W
Sbjct: 54 GGYWQIITCCAVVAFVSWVLRQAEISRKLGMSYHVPIAFSVAVFAYVSLNVIRPLWMGAW 113
Query: 169 FFAPSFGVAAIFRFIL-FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
+G+ ++ F N+ NP HM+ ++ AL A+HG V
Sbjct: 114 GNGFPYGIWTHLEWVSNVGYAFGNFHYNPVHMLAISFFFTNALALALHGGLV-------- 165
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 287
A NP+ + S + ++ G + +H LF+ ++ + SA+ +
Sbjct: 166 -----LSAVNPSGGTDVKSPEYEDTYFRDFIGYSVGT-LGIHRVGLFLALSAGFWSAICI 219
Query: 288 V 288
V
Sbjct: 220 V 220
>sp|P19057|RCEL_RHOCA REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTHETIC REACTION CENTER L
SUBUNIT)
pir||B28771 reaction center protein chain L - Rhodobacter capsulatus
emb|CAA77554.1| (Z11165) 282 aa (31.5 kD) reaction center L protein [Rhodobacter
capsulatus]
gb|AAA26174.1| (K01184) reaction center protein L subunit [Rhodobacter capsulatus]
Length = 282
Score = 56.6 bits (134), Expect = 5e-07
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 90 LLLLWGPEAQGDFTRWC-----------------QLGGLWTFVALHGAFGLIGFMLRQFE 132
LL+LWG QG + GGLW + + + LR+ E
Sbjct: 48 LLILWGAAMQGTWNPQLISIFPPPVENGLNVAALDKGGLWQVITVCATGAFCSWALREVE 107
Query: 133 LARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL-FFQGFHN 191
+ R + + + +AFS I ++++ +I P+ W +A +G+ ++ + N
Sbjct: 108 ICRKLGIGFHIPVAFSMAIFAYLTLVVIRPMMMGSWGYAFPYGIWTHLDWVSNTGYTYGN 167
Query: 192 WTLNPFHMMGVAGVLGAALLCAIHGATV 219
+ NPFHM+G++ A A+HGA V
Sbjct: 168 FHYNPFHMLGISLFFTTAWALAMHGALV 195
>gb|AAG42644.1| (AF182374) photosynthetic reaction center L subunit [Bradyrhizobium
sp. ORS278]
Length = 280
Score = 56.2 bits (133), Expect = 6e-07
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 21/184 (11%)
Query: 109 GGLWTFVAL--HGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQS 166
GG W + + HGAF + + LR+ E+ R + + + AF I + ++ +I P+
Sbjct: 84 GGFWQLITVCAHGAF--VSWALREVEICRKLAIGYHVPFAFGFAIFAYFTLEVIRPVLMG 141
Query: 167 GWFFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF 224
W +A +G+ ++ +Q F N+ NP HM+ + L A+HG+ +
Sbjct: 142 SWSYAFPYGIITHLDWVSNTGYQ-FGNFHYNPAHMIAITFFFTTCLALALHGSLI----- 195
Query: 225 EDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSA 284
A NP + +E S N + + G + +H LF+ ++ ++ SA
Sbjct: 196 --------LSAANPGKGQEMKSPEHENTMFRDLIGYSIGT-LGIHRLGLFLALSAVFFSA 246
Query: 285 LGVV 288
+ +V
Sbjct: 247 VCIV 250
>gb|AAD45368.1|AF161593_1 (AF161593) photosynthetic reaction centre L subunit [Blastochloris
sulfoviridis]
Length = 240
Score = 56.2 bits (133), Expect = 6e-07
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + + +MLR+ E++R + + + +AF PI +F + + P+ GW
Sbjct: 50 GGFWQAITVCAIGAFVSWMLREVEISRKLGMGWHVPLAFCVPIFMFCVLQVFRPILMGGW 109
Query: 169 FFAPSFGVAAIFRFILFFQGFH--NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
A +G+ + ++ F GF NW NP HM V+ + A +HG + ++
Sbjct: 110 GHAFPYGILSHLDWVNNF-GFQYLNWHYNPGHMSSVSFLFANAAALGLHGGLI-LSVANP 167
Query: 227 GDG 229
GDG
Sbjct: 168 GDG 170
>dbj|BAA77029.1| (AB026182) photosynthetic reaction center L subunit [Sphingomonas
sp. NT12]
Length = 245
Score = 56.2 bits (133), Expect = 6e-07
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + LR+ E+ R + + + IAF I +VS+ +I P+ W
Sbjct: 55 GGLWQIITICAVGAFCSWALREVEICRKLGMGYHVPIAFGFAIFAYVSLVVIRPILLGAW 114
Query: 169 FFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
F +G+ + ++ +Q H + NP HM+ V+ L A+HG V
Sbjct: 115 GFGFPYGIFSHLDWVSNTGYQYLH-FHYNPAHMIAVSFFFTTTLALALHGGLV------- 166
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
A NP + E+ S + F+ G + +H LF+ ++ + SA+
Sbjct: 167 ------LSAVNPQKGEDVKSPEYEDAFFRDTIGYSVGT-LGIHRVGLFLALSAAFWSAIC 219
Query: 287 VV 288
++
Sbjct: 220 II 221
>pdb|1MPS|M Chain M, Photosynthetic Reaction Center Mutant With Phe M 197
Replaced With Arg And Tyr M 177 Replaced With Phe (Chain
M, Y177f, F197r)
Length = 307
Score = 56.2 bits (133), Expect = 6e-07
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 61 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 108
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 109 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAI 154
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A FG+ + + F H N NPFH + +A + G+AL
Sbjct: 155 WLWMVLGFIRPILMGSWSEAVPFGIFSHLDWTNNFSLVHGNLRYNPFHGLSIAFLYGSAL 214
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G + + RW
Sbjct: 215 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNATMEGIHRW 268
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 269 AIWMAVLVTLTG 280
>dbj|BAA32994.1| (AB015707) photosynthetic reaction center M subunit [Erythrobacter
sp.]
Length = 245
Score = 56.2 bits (133), Expect = 6e-07
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 10/164 (6%)
Query: 63 GLASSYLEGCNFLTAAVSTPANSLAHSLLLLW---GPEAQGDFTRWCQLGGLWTFVALHG 119
G A+ ++ G NF A +P + L GP+ DF GG +
Sbjct: 64 GFAALFIIGMNFGAQANWSPQTFMREFFWLSLDPPGPQYGKDFIVPLNEGGWFIMTGAFL 123
Query: 120 AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAI 179
++ ++ R + A+++ + + AF+ I +F+ + I P+ +GW A +G I
Sbjct: 124 TISVLCWLARTYYRAKALGMGYHIFWAFASAIWLFLVLGFIRPMLGTGWHEAVPYG---I 180
Query: 180 FRFILFFQGFH----NWTLNPFHMMGVAGVLGAALLCAIHGATV 219
F +++ F N+ NPFH + + + G+A+L A+HGAT+
Sbjct: 181 FSHLIWTNNFSLVWGNFFYNPFHALSIVFLYGSAILFAMHGATI 224
>dbj|BAA32551.1| (AB016990) photosynthetic reaction center L subunit [Roseobacter
litoralis]
Length = 255
Score = 56.2 bits (133), Expect = 6e-07
Identities = 47/231 (20%), Positives = 83/231 (35%), Gaps = 37/231 (16%)
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRWC-----------------QLGGLWTFVALHGAF 121
V+T +L ++L+ WG QG F W GGLW + +
Sbjct: 9 VTTAFFALLGTILIFWGASQQGTFNPWLINIAPPDLSYGLGLAPLLEGGLWQIITICATG 68
Query: 122 GLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFR 181
I + LR+ E+ R + + + F+ I ++++ + PL W +G+ +
Sbjct: 69 AFISWALREVEICRKLGMGYHVPFGFAAAIIAYMTLVIFRPLLMGAWGHGFPYGIFSHLD 128
Query: 182 FI----LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFN 237
++ + FH NP HM+ V L A+HG + A N
Sbjct: 129 WVSNTGYAYLHFH---YNPAHMLAVTLFFTTTLALALHGGLI-------------LSACN 172
Query: 238 PTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVV 288
P + EE + + F+ G + L GLW + ++
Sbjct: 173 PEKGEEAKTPDHEDTFFRDFIGYSVGTLGIHRVGYLLAINAGLWSAVCIII 223
>pdb|1QOV|M Chain M, Photosynthetic Reaction Center Mutant With Ala M260
Replaced With Trp (Chain M, A260w)
Length = 307
Score = 55.8 bits (132), Expect = 8e-07
Identities = 62/252 (24%), Positives = 102/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 61 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 108
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 109 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAI 154
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 155 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 214
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G ++ + RW
Sbjct: 215 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNWTMEGIHRW 268
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 269 AIWMAVLVTLTG 280
>pir||T50761 reaction center protein chain M [imported] - Rhodobacter
sphaeroides
gb|AAF24305.1| (AF195122) PufM [Rhodobacter sphaeroides]
Length = 308
Score = 55.8 bits (132), Expect = 8e-07
Identities = 62/252 (24%), Positives = 102/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 62 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 109
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 110 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAI 155
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 156 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 215
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T+AE A FW G + + RW
Sbjct: 216 LFAMHGATILAVSRFGGERELEQIADRGTEAER------AALFWRWTMGFNATMEGIHRW 269
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 270 AIWMAVLVTLTG 281
>gb|AAC16320.1| (AF061287) D1 protein [Senecio vulgaris]
Length = 92
Score = 55.8 bits (132), Expect = 8e-07
Identities = 25/62 (40%), Positives = 41/62 (65%), Gaps = 2/62 (3%)
Query: 240 QAEETYSMVTANRFWSQIFG--VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAY 297
Q EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W +ALG+ +A NL +
Sbjct: 7 QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 66
Query: 298 DF 299
+F
Sbjct: 67 NF 68
>dbj|BAA22645.1| (D50651) photosynthetic reaction center L subunit [Rhodocyclus
tenuis]
Length = 253
Score = 55.8 bits (132), Expect = 8e-07
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + + LR+ E+ R + + Y AFS I ++++ +I P+ W
Sbjct: 63 GGLWQAITVCAIGVFVSWALREVEICRKLGIGFYIPFAFSFAILAYITLVVIRPVLMGAW 122
Query: 169 FFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
+G+ + ++ +Q H + NP HM+G+A L A+HG+ +
Sbjct: 123 GHGFPYGIMSHLDWVSNTGYQYLH-FHYNPGHMLGIAFFFTTTLALALHGSLI------- 174
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
A NP + + + N F+ + G + +H LF+ ++ + SA+
Sbjct: 175 ------LSATNPGKXQVVKTAEHENTFFRDVVGYSIGALA-IHRLGLFLALSAAFWSAVC 227
Query: 287 VV 288
+V
Sbjct: 228 IV 229
>gb|AAB67246.1| (AF018955) reaction center L subunit [Ectothiorhodospira
shaposhnikovii]
Length = 274
Score = 55.8 bits (132), Expect = 8e-07
Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 43/272 (15%)
Query: 36 LLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWG 95
+L F Y GG G W + Y+ LTA + L +LL++WG
Sbjct: 3 MLSFEKRYRVRGGTLIGGDLFDFW----VGPFYVGFFGVLTAFFA-----LLGTLLIVWG 53
Query: 96 PEAQGDFTRW-----------------CQLGGLWTFVALHGAFGLIGFMLRQFELARSVQ 138
+ W GGLW + + + + LRQ E+AR +
Sbjct: 54 AAMGPTWNIWQISINPPDLSYGLGFAPLTEGGLWQMITICALGAFVSWALRQAEIARKLG 113
Query: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFI--LFFQGFHNWTLNP 196
+ + IAFS + + ++ +I P+ W +G+ + ++ +Q H + NP
Sbjct: 114 MGLHLPIAFSVAVFAYFTLVVIRPVLLGAWGHGFPYGIMSHLDWVSNTGYQFLH-FHYNP 172
Query: 197 FHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ 256
HM+ +A AL ++HG + A NP + E + + F+
Sbjct: 173 AHMLAIAFFFTTALALSLHGGLI-------------LSATNPKKGEPVKTPEYEDTFFRD 219
Query: 257 IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVV 288
+ G + +H LF+ ++ + SA+ +V
Sbjct: 220 VVGYSI-GALGIHRLGLFLALSAAFWSAVCIV 250
>dbj|BAA09314.1| (D50647) photosynthetic reaction center L subunit [Allochromatium
vinosum]
Length = 257
Score = 55.8 bits (132), Expect = 8e-07
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + + LR+ E+ R + + + AF+ PI ++ + ++ P+ W
Sbjct: 68 GGLWQIITICAIGAFVSWALREVEICRKLGIGFHIPFAFAFPIGAYLVLVVVRPILMGAW 127
Query: 169 FFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
+G+ + ++ + +Q F N+ NP HM+ + L ++HG+
Sbjct: 128 GHGFPYGILSHLDWVSNVGYQ-FLNFHYNPAHMLAITFFFTNCLALSMHGSL-------- 178
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
NP + EE + N F+ I G + +H LF+ ++ ++ SA+
Sbjct: 179 -----NLSVTNPQKGEEVKTSEHENTFFRDIVGYSIGALA-IHRLGLFLALSAVFWSAVC 232
Query: 287 VV 288
+V
Sbjct: 233 IV 234
>gb|AAD41904.1|AF159440_2 (AF159440) photosynthetic reaction center M subunit [Rhodoplanes
elegans]
Length = 245
Score = 55.4 bits (131), Expect = 1e-06
Identities = 31/111 (27%), Positives = 56/111 (49%), Gaps = 1/111 (0%)
Query: 110 GLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWF 169
G W ++ + +R ++ AR + + + A AF+ I +++S+ P+ W
Sbjct: 114 GWWLMAGFFLTLSILLWWVRVYQRARVLGMGTHLAWAFASAIFLYLSLGFFRPILMGSWA 173
Query: 170 FAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
A FG+ + F + N NPFHM+ +A + G+A+L A+HGAT+
Sbjct: 174 EAVPFGIFPHLDWTAAFSIRYGNLFYNPFHMLSIAFLYGSAVLFAMHGATI 224
>dbj|BAA25790.1| (AB010830) photosynthetic reaction center M subunit [Rhodomicrobium
vannielii]
Length = 250
Score = 55.4 bits (131), Expect = 1e-06
Identities = 47/177 (26%), Positives = 78/177 (43%), Gaps = 4/177 (2%)
Query: 46 LGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRW 105
+G + G T V S G + + G N + +PA + L P A + +
Sbjct: 48 IGPIYLGLTGVAS-IIFGFIAIEIIGLNMAASVDWSPAQFVKQLPWLALEPPAPENGLKI 106
Query: 106 CQL--GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPL 163
L GG W + ++ + R + AR + + + A AF+ I + +S+ L P+
Sbjct: 107 PPLNQGGWWLWAGFFMTASVLLWWARTYLRARQLGMGTHIAWAFASAIFLMLSLGLFRPV 166
Query: 164 GQSGWFFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
W A FG+ + F + N NPFHM+ +A + G+ALL +HGAT+
Sbjct: 167 LMGTWGEAVPFGIFPHLDWTTAFSIRYGNLYYNPFHMLSIAFLYGSALLFGMHGATI 223
>dbj|BAA22650.1| (D50653) photosynthetic reaction center M subunit [Thiocystis
gelatinosa]
Length = 257
Score = 55.4 bits (131), Expect = 1e-06
Identities = 31/112 (27%), Positives = 56/112 (49%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W ++ + +R ++ A ++ + + + AF+ I ++ + I P+ W
Sbjct: 112 GGWWLMAGFFLTASILLWWVRTYKRAEALGMSQHLSWAFASAIFFYLCLGFIRPIMMGSW 171
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
A FG+ + F + N NPFHM+ +A + G+ALL A+HGAT+
Sbjct: 172 AEAVPFGIFPHLDWTAAFSIRYGNLYYNPFHMVSIAFLYGSALLFAMHGATI 223
>dbj|BAA22648.1| (D50652) photosynthetic reaction center M subunit [Rhodomicrobium
vannielii]
Length = 257
Score = 55.4 bits (131), Expect = 1e-06
Identities = 47/177 (26%), Positives = 78/177 (43%), Gaps = 4/177 (2%)
Query: 46 LGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRW 105
+G + G T V S G + + G N + +PA + L P A + +
Sbjct: 48 IGPIYLGLTGVAS-IIFGFIAIEIIGLNMAASVDWSPAQFVKQLPWLALEPPAPENGLKI 106
Query: 106 CQL--GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPL 163
L GG W + ++ + R + AR + + + A AF+ I + +S+ L P+
Sbjct: 107 PPLNQGGWWLWAGFFMTASVLLWWARTYLRARKLGMGTHIAWAFASAIFLMLSLGLFRPV 166
Query: 164 GQSGWFFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
W A FG+ + F + N NPFHM+ +A + G+ALL +HGAT+
Sbjct: 167 LMGTWGEAVPFGIFPHLDWTTAFSIRYGNLYYNPFHMLSIAFLYGSALLFGMHGATI 223
>dbj|BAA22644.1| (D50650) photosynthetic reaction center M subunit [Rhodoferax
fermentans]
Length = 257
Score = 55.4 bits (131), Expect = 1e-06
Identities = 32/112 (28%), Positives = 55/112 (48%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W LI + LR + AR + + + A AF+ I +++++ I P+ W
Sbjct: 112 GGWWLMAGFFLTASLILWWLRIYRRARELHMGTHVAWAFAAAILLYLALGFIRPVLMGSW 171
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
A FG+ + F + N NP H++ +A + G+ L+ A+HGAT+
Sbjct: 172 SEAVPFGIFPHLDWTAAFSLRYGNLFYNPLHVLSIAFLYGSTLIFAMHGATI 223
>pdb|1E14|M Chain M, Photosynthetic Reaction Center Mutant With Phe M197
Replaced With Arg (Chain M, Fm197r) And Gly M203
Replaced With Asp (Chain M, Gm203d)
Length = 307
Score = 55.0 bits (130), Expect = 1e-06
Identities = 62/252 (24%), Positives = 101/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 61 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 108
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 109 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAI 154
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 155 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLRYNPFHDLSIAFLYGSAL 214
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G + + RW
Sbjct: 215 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNATMEGIHRW 268
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 269 AIWMAVLVTLTG 280
>dbj|BAA87899.1| (AB018690) photosynthetic reaction center L subunit [alpha
proteobacterium MBIC3951]
Length = 257
Score = 55.0 bits (130), Expect = 1e-06
Identities = 44/218 (20%), Positives = 81/218 (36%), Gaps = 32/218 (14%)
Query: 89 SLLLLWGPEAQGDFTRWC-----------------QLGGLWTFVALHGAFGLIGFMLRQF 131
++L+ WG QG F W GGLW + + + LR+
Sbjct: 19 TILIFWGAAMQGTFNPWIINIAPPDLKYGLGMAPLMEGGLWQIITFCAVGAFVSWGLREV 78
Query: 132 ELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL-FFQGFH 190
E+ R + + + +AF + +V++ + PL W +G+ + ++ +
Sbjct: 79 EICRKLGMGYHVPVAFGFAVFAYVTLVVFRPLLMGAWGHGFPYGIFSHLDWVSNVGYSYL 138
Query: 191 NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTA 250
++ NP HM+ V L A+HGA + A NP + EE +
Sbjct: 139 HFHYNPAHMLAVTFFFTTTLALALHGALI-------------LSAANPEKGEEAKTPDHE 185
Query: 251 NRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVV 288
+ F+ G + +L G W SA+ ++
Sbjct: 186 DTFFRDFIGYSVGTLGIHRVGLLLALNAGFW-SAICII 222
>pdb|1DS8|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DS8|S Chain S, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DV6|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1DV6|S Chain S, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1DV3|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb- State With
The Proton Transfer Inhibitor Cd2+
pdb|1DV3|S Chain S, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb- State With
The Proton Transfer Inhibitor Cd2+
Length = 307
Score = 54.7 bits (129), Expect = 2e-06
Identities = 62/252 (24%), Positives = 101/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 61 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 108
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 109 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAI 154
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 155 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 214
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G + + RW
Sbjct: 215 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNATMEGIHRW 268
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 269 AIWMAVLVTLTG 280
>pir||T50760 reaction center protein chain L [imported] - Rhodobacter
sphaeroides
gb|AAF24304.1| (AF195122) PufL [Rhodobacter sphaeroides]
Length = 282
Score = 54.7 bits (129), Expect = 2e-06
Identities = 39/181 (21%), Positives = 80/181 (43%), Gaps = 15/181 (8%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + + LR+ E+ R + + + AF+ I ++++ L P+ W
Sbjct: 84 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAW 143
Query: 169 FFAPSFGVAAIFRFIL-FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
+A +G+ ++ + N+ NP HM+ ++ AL A+HGA V
Sbjct: 144 GYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALV-------- 195
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 287
A NP + +E + + F+ + G + +H L + ++ ++ SAL +
Sbjct: 196 -----LSAANPEKGKEMRTPDHEDTFFRDLVGYSIGT-LGIHRLGLLLSLSAVFFSALCM 249
Query: 288 V 288
+
Sbjct: 250 I 250
>pdb|1AIJ|S Chain S, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
Length = 301
Score = 54.7 bits (129), Expect = 2e-06
Identities = 62/252 (24%), Positives = 101/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 61 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 108
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 109 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAI 154
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 155 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 214
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G + + RW
Sbjct: 215 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNATMEGIHRW 268
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 269 AIWMAVLVTLTG 280
>pdb|1YST|M Chain M, Photosynthetic Reaction Center (Wild Type)
Length = 305
Score = 54.7 bits (129), Expect = 2e-06
Identities = 62/252 (24%), Positives = 101/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 61 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 108
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 109 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQAMGMGKHTAWAFLSAI 154
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 155 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 214
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G + + RW
Sbjct: 215 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNATMEGIHRW 268
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 269 AIWMAVLVTLTG 280
>pdb|1YST|L Chain L, Photosynthetic Reaction Center (Wild Type)
Length = 273
Score = 54.7 bits (129), Expect = 2e-06
Identities = 39/181 (21%), Positives = 80/181 (43%), Gaps = 15/181 (8%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + + LR+ E+ R + + + AF+ I ++++ L P+ W
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAW 142
Query: 169 FFAPSFGVAAIFRFIL-FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
+A +G+ ++ + N+ NP HM+ ++ AL A+HGA V
Sbjct: 143 GYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALV-------- 194
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 287
A NP + +E + + F+ + G + +H L + ++ ++ SAL +
Sbjct: 195 -----LSAANPEKGKEMRTPDHEDTFFRDLVGYSIGT-LGIHRLGLLLSLSAVFFSALCM 248
Query: 288 V 288
+
Sbjct: 249 I 249
>pdb|1PSS|M Chain M, Photosynthetic Reaction Center (Wild-Type)
Length = 296
Score = 54.7 bits (129), Expect = 2e-06
Identities = 62/252 (24%), Positives = 101/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 56 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 103
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 104 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAI 149
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 150 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 209
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G + + RW
Sbjct: 210 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNATMEGIHRW 263
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 264 AIWMAVLVTLTG 275
>pdb|1PSS|L Chain L, Photosynthetic Reaction Center (Wild-Type)
pdb|1PST|L Chain L, Photosynthetic Reaction Center Mutant With His M 202
Replaced With Leu (H(M 202)l)
Length = 266
Score = 54.7 bits (129), Expect = 2e-06
Identities = 39/181 (21%), Positives = 80/181 (43%), Gaps = 15/181 (8%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + + LR+ E+ R + + + AF+ I ++++ L P+ W
Sbjct: 79 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAW 138
Query: 169 FFAPSFGVAAIFRFIL-FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
+A +G+ ++ + N+ NP HM+ ++ AL A+HGA V
Sbjct: 139 GYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALV-------- 190
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 287
A NP + +E + + F+ + G + +H L + ++ ++ SAL +
Sbjct: 191 -----LSAANPEKGKEMRTPDHEDTFFRDLVGYSIGT-LGIHRLGLLLSLSAVFFSALCM 244
Query: 288 V 288
+
Sbjct: 245 I 245
>pdb|2RCR|M Chain M, Photosynthetic Reaction Center From (Rhodobacter
sphaeroides)
pdb|1PCR|M Chain M, Photosynthetic Reaction Center
pdb|1AIJ|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1AIG|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb- Charge Separated State
pdb|1AIG|O Chain O, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb- Charge Separated State
pdb|4RCR|M Chain M, Photosynthetic Reaction Center
Length = 307
Score = 54.7 bits (129), Expect = 2e-06
Identities = 62/252 (24%), Positives = 101/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 61 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 108
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 109 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAI 154
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 155 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 214
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G + + RW
Sbjct: 215 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNATMEGIHRW 268
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 269 AIWMAVLVTLTG 280
>pdb|1E14|L Chain L, Photosynthetic Reaction Center Mutant With Phe M197
Replaced With Arg (Chain M, Fm197r) And Gly M203
Replaced With Asp (Chain M, Gm203d)
pdb|1E6D|L Chain L, Photosynthetic Reaction Center Mutant With Trp M115
Replaced With Phe (Chain M, Wm115f) Phe M197 Replaced
With Arg (Chain M, Fm197r)
pdb|1QOV|L Chain L, Photosynthetic Reaction Center Mutant With Ala M260
Replaced With Trp (Chain M, A260w)
pdb|1AIJ|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1AIJ|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1DS8|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DS8|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DV6|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1DV6|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1DV3|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb- State With
The Proton Transfer Inhibitor Cd2+
pdb|1DV3|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb- State With
The Proton Transfer Inhibitor Cd2+
pdb|1MPS|L Chain L, Photosynthetic Reaction Center Mutant With Phe M 197
Replaced With Arg And Tyr M 177 Replaced With Phe (Chain
M, Y177f, F197r)
pdb|1AIG|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb- Charge Separated State
pdb|1AIG|N Chain N, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb- Charge Separated State
pdb|1PCR|L Chain L, Photosynthetic Reaction Center
pdb|2RCR|L Chain L, Photosynthetic Reaction Center From (Rhodobacter
sphaeroides)
pdb|4RCR|L Chain L, Photosynthetic Reaction Center
Length = 281
Score = 54.7 bits (129), Expect = 2e-06
Identities = 39/181 (21%), Positives = 80/181 (43%), Gaps = 15/181 (8%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + + LR+ E+ R + + + AF+ I ++++ L P+ W
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAW 142
Query: 169 FFAPSFGVAAIFRFIL-FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
+A +G+ ++ + N+ NP HM+ ++ AL A+HGA V
Sbjct: 143 GYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALV-------- 194
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 287
A NP + +E + + F+ + G + +H L + ++ ++ SAL +
Sbjct: 195 -----LSAANPEKGKEMRTPDHEDTFFRDLVGYSIGT-LGIHRLGLLLSLSAVFFSALCM 248
Query: 288 V 288
+
Sbjct: 249 I 249
>sp|P02953|RCEM_RHOSH REACTION CENTER PROTEIN M CHAIN (PHOTOSYNTHETIC REACTION CENTER M
SUBUNIT)
pir||WNRFMS reaction center protein chain M - Rhodobacter sphaeroides
gb|AAA26179.1| (K00827) reaction center subunit m [Rhodobacter sphaeroides]
emb|CAB38755.1| (AJ010302) reaction centre M protein [Rhodobacter sphaeroides]
prf||0911309A protein M,reaction center [Rhodobacter sphaeroides]
Length = 308
Score = 54.7 bits (129), Expect = 2e-06
Identities = 62/252 (24%), Positives = 101/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 62 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 109
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 110 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAI 155
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 156 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 215
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G + + RW
Sbjct: 216 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNATMEGIHRW 269
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 270 AIWMAVLVTLTG 281
>pir||S24213 reaction center protein chain M - Rhodobacter sphaeroides
emb|CAA45001.1| (X63405) polypeptide M of reaction centre [Rhodobacter sphaeroides]
Length = 308
Score = 54.7 bits (129), Expect = 2e-06
Identities = 62/252 (24%), Positives = 101/252 (39%), Gaps = 37/252 (14%)
Query: 33 WSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASS-YLEGCNFLTAAVSTPANSLAHSLL 91
+SGL+ F F +G WF WY G + +L F + P L+ +
Sbjct: 62 FSGLMWF----FTIGIWF--------WYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAP 109
Query: 92 LLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPI 151
L + GGLW + + + R + A+++ + + A AF I
Sbjct: 110 L--------------KEGGLWLIASFFMFVAVWSWWGRTYLRAQAMGMGKHTAWAFLSAI 155
Query: 152 AVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFH-NWTLNPFHMMGVAGVLGAAL 210
+++ + I P+ W A +G+ + + F H N NPFH + +A + G+AL
Sbjct: 156 WLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSAL 215
Query: 211 LCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNK---RW 267
L A+HGAT+ G+ A T AE A FW G + + RW
Sbjct: 216 LFAMHGATILAVSRFGGERELEQIADRGTAAER------AALFWRWTMGFNATMEGIHRW 269
Query: 268 LHFFMLFVPVTG 279
+ + V +TG
Sbjct: 270 AIWMAVLVTLTG 281
>sp|P02954|RCEL_RHOSH REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTHETIC REACTION CENTER L
SUBUNIT)
pir||WNRFLS reaction center protein chain L - Rhodobacter sphaeroides
emb|CAA44999.1| (X63404) polypeptide L of reaction centre [Rhodobacter sphaeroides]
gb|AAA26177.1| (M10206) reaction center L subunit [Rhodobacter sphaeroides]
emb|CAB38754.1| (AJ010302) reaction centre L protein [Rhodobacter sphaeroides]
Length = 282
Score = 54.7 bits (129), Expect = 2e-06
Identities = 39/181 (21%), Positives = 80/181 (43%), Gaps = 15/181 (8%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + + LR+ E+ R + + + AF+ I ++++ L P+ W
Sbjct: 84 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAW 143
Query: 169 FFAPSFGVAAIFRFIL-FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
+A +G+ ++ + N+ NP HM+ ++ AL A+HGA V
Sbjct: 144 GYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALV-------- 195
Query: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGV 287
A NP + +E + + F+ + G + +H L + ++ ++ SAL +
Sbjct: 196 -----LSAANPEKGKEMRTPDHEDTFFRDLVGYSIGT-LGIHRLGLLLSLSAVFFSALCM 249
Query: 288 V 288
+
Sbjct: 250 I 250
>dbj|BAA96363.1| (AB043963) photosystem II Qb protein [Bruguiera gymnorhiza]
Length = 128
Score = 54.3 bits (128), Expect = 2e-06
Identities = 24/62 (38%), Positives = 40/62 (63%), Gaps = 2/62 (3%)
Query: 240 QAEETYSMVTANRFWSQIFG--VAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAY 297
Q EETY++V A+ ++ ++ +F+N R LHFF+ PV G+W + LG+ +A NL +
Sbjct: 16 QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTVLGISTMAFNLNGF 75
Query: 298 DF 299
+F
Sbjct: 76 NF 77
>dbj|BAA22643.1| (D50650) photosynthetic reaction center L subunit [Rhodoferax
fermentans]
Length = 253
Score = 54.3 bits (128), Expect = 2e-06
Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 34/229 (14%)
Query: 79 VSTPANSLAHSLLLLWGPEAQGDFTRW-----------------CQLGGLWTFVALHGAF 121
V+T S+ + ++LWG + W GGLW V +
Sbjct: 16 VTTLFFSVLGTFMILWGASQGPTWNLWQISIAPPDLSYGLGIAPLMEGGLWQLVTVCAIG 75
Query: 122 GLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFR 181
+ +MLR+ E+ R + + + +AF I +V++ +I P+ W +G+ +
Sbjct: 76 AFVSWMLREVEICRKLGMGLHVPLAFGVAIFAYVTLVVIRPVLMGAWGHGFPYGIYSHLD 135
Query: 182 F--ILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPT 239
+ + +Q H + NP HM+ ++ G ++H + + + A NP
Sbjct: 136 WGSNVGYQYLH-FHYNPAHMLAISFSFGTTFALSLHSSLIVS-------------ASNPK 181
Query: 240 QAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVV 288
+ E+ + + F+ I G + +H LF+ + + SAL +V
Sbjct: 182 KGEKVCAPEAEDTFFRDIIGYSIGT-LGIHRLGLFLALAAVLFSALCIV 229
>dbj|BAA33002.1| (AB015977) photosynthetic reaction center M subunit
[Rhodopseudomonas palustris]
Length = 243
Score = 53.9 bits (127), Expect = 3e-06
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W ++ + +R + +R++ + + + AF+ I +++++ I P+ W
Sbjct: 111 GGWWLTTGFFLTASILLWWVRTYRRSRALGMGTHVSWAFASAIFLYLALGFIQPVMMGTW 170
Query: 169 FFAPSFGVAAIFRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
AP FG+ + F + + NPFH + +A + G+ALL A+HGAT+
Sbjct: 171 SEAPPFGIFPHLDWTNNFSIKYGSLYYNPFHCLSIAFLYGSALLFAMHGATI 222
>dbj|BAA22649.1| (D50653) photosynthetic reaction center L subunit [Thiocystis
gelatinosa]
Length = 257
Score = 53.9 bits (127), Expect = 3e-06
Identities = 40/182 (21%), Positives = 79/182 (42%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + LRQ E++R + + + AFS I ++++ +I P+ W
Sbjct: 68 GGLWQIITFCAIGAFVSWALRQVEISRKLGIGFHVPFAFSFAIGAYITLVVIRPILLGAW 127
Query: 169 FFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
+G+ + ++ + +Q H + NP HM+ + AL A+HG+
Sbjct: 128 GHGFPYGIMSHLDWVSNVGYQFLH-FHYNPAHMLAITFFFTNALALAMHGSL-------- 178
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
NP + E + N F+ I G + + +H LF+ ++ ++ A+
Sbjct: 179 -----NLSVTNPQEGEPVKTSEHENTFFRDIVGYS-NGALAIHRLGLFLALSAVFWXAVC 232
Query: 287 VV 288
+V
Sbjct: 233 IV 234
>pdb|1DXR|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis - His L168 Phe Mutant (Terbutryn Complex)
Length = 273
Score = 53.5 bits (126), Expect = 4e-06
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + I +MLR+ E++R + + + +AF PI +F + + PL W
Sbjct: 83 GGFWQAITVCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFCVLQVFRPLLLGSW 142
Query: 169 FFAPSFGVAAIFRFI-LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
A +G+ + ++ F + NW NP HM V+ + A+ +HG + ++ G
Sbjct: 143 GHAFPYGILSHLDWVNNFGYQYLNWFYNPGHMSSVSFLFVNAMALGLHGGLI-LSVANPG 201
Query: 228 DG 229
DG
Sbjct: 202 DG 203
>dbj|BAA94252.1| (AB031015) photosynthetic reaction center M subunit [Sphingomonas
natatoria]
Length = 257
Score = 53.5 bits (126), Expect = 4e-06
Identities = 43/161 (26%), Positives = 71/161 (43%), Gaps = 4/161 (2%)
Query: 63 GLASSYLEGCNFLTAAVSTPANSLAHSL-LLLWGPEAQGDFTRWCQL--GGLWTFVALHG 119
G S + G N L + P L L L P + F+ + L GG W
Sbjct: 64 GALSISIMGLNMLASVNWNPNRFLKEFFWLALEPPGPEWGFSVYVPLAEGGWWIIAGFFL 123
Query: 120 AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAI 179
++ + R + AR++ + + A AF+ I +++ + +I P W A FG+
Sbjct: 124 TASILLWWARTYLRARALGMGTHIAWAFASAIWLYLVLGIIRPFLLGSWSEAVPFGIFPH 183
Query: 180 FRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
+ F + N NPFH + +A + G+ LL A+HGAT+
Sbjct: 184 LDWTAAFSIRYGNLFYNPFHALSIAFLYGSTLLFAMHGATI 224
>dbj|BAA25789.1| (AB010830) photosynthetic reaction center L subunit [Rhodomicrobium
vannielii]
Length = 245
Score = 53.5 bits (126), Expect = 4e-06
Identities = 41/182 (22%), Positives = 77/182 (41%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + I + LR+ E+ R + + + I FS I ++++ +I P+ W
Sbjct: 55 GGLWQLITICATGAFISWALREVEICRKLGIGYHVPIVFSVAIFAYLTLVVIRPVLLGAW 114
Query: 169 FFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
F +G+ + ++ +Q H + NP HM+ ++ ALL A+HG +
Sbjct: 115 GFGFPYGILSHLDWVSNTGYQYLH-FHYNPAHMLAISFFFLTALLLAMHGGLI------- 166
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
A NP + + N F + G + +H +F + + SAL
Sbjct: 167 ------LSALNPGDRDVVKTPEHENAFTRDLLGYSVGT-IGIHRLGVFTAIMAVLFSALC 219
Query: 287 VV 288
++
Sbjct: 220 IL 221
>dbj|BAA25728.1| (AB012060) photosynthetic reaction center M subunit [Sphingomonas
natatoria]
Length = 251
Score = 53.5 bits (126), Expect = 4e-06
Identities = 43/161 (26%), Positives = 71/161 (43%), Gaps = 4/161 (2%)
Query: 63 GLASSYLEGCNFLTAAVSTPANSLAHSL-LLLWGPEAQGDFTRWCQL--GGLWTFVALHG 119
G S + G N L + P L L L P + F+ + L GG W
Sbjct: 64 GALSISIMGLNMLASVNWNPNRFLKEFFWLALEPPGPEWGFSVYVPLAEGGWWIIAGFFL 123
Query: 120 AFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAI 179
++ + R + AR++ + + A AF+ I +++ + +I P W A FG+
Sbjct: 124 TASILLWWARTYLRARALGMGTHIAWAFASAIWLYLVLGIIRPFLLGSWSEAVPFGIFPH 183
Query: 180 FRFILFFQ-GFHNWTLNPFHMMGVAGVLGAALLCAIHGATV 219
+ F + N NPFH + +A + G+ LL A+HGAT+
Sbjct: 184 LDWTAAFSIRYGNLFYNPFHALSIAFLYGSTLLFAMHGATI 224
>dbj|BAA22647.1| (D50652) photosynthetic reaction center L subunit [Rhodomicrobium
vannielii]
Length = 253
Score = 53.5 bits (126), Expect = 4e-06
Identities = 41/182 (22%), Positives = 77/182 (41%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + I + LR+ E+ R + + + I FS I ++++ +I P+ W
Sbjct: 63 GGLWQLITICATGAFISWALREVEICRKLGIGYHVPIVFSVAIFAYLTLVVIRPVLLGAW 122
Query: 169 FFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
F +G+ + ++ +Q H + NP HM+ ++ ALL A+HG +
Sbjct: 123 GFGFPYGILSHLDWVSNTGYQYLH-FHYNPAHMLAISFFFLTALLLAMHGGLI------- 174
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
A NP + + N F + G + +H +F + + SAL
Sbjct: 175 ------LSALNPGDRDVVKTPEHENAFTRDLLGYSVGT-IGIHRLGVFTAIMAVLFSALC 227
Query: 287 VV 288
++
Sbjct: 228 IL 229
>pir||T10820 photosynthetic reaction center L - Rhodospirillum photometricum
(fragment)
dbj|BAA09329.1| (D50681) photosynthetic reaction center L subunit [Rhodospirillum
photometricum]
Length = 255
Score = 53.5 bits (126), Expect = 4e-06
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + LRQ E+AR + + + AFS I ++++ +I PL W
Sbjct: 63 GGLWQLITICAIGRFCCWALRQVEIARKLGMGLHIPFAFSFAIFAYLALVVIRPLLLGAW 122
Query: 169 FFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
+G+ + ++ + +Q H + NP HM+G+ + +HG+ + + L
Sbjct: 123 GHGXPYGILSHLDWVSNIGYQFLH-FHYNPAHMIGITFFFTNCMAFGMHGSIILSVL--- 178
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
NP + E+ N F+ + G + +H +F+ ++ + SA+
Sbjct: 179 ----------NPGKGEKVKGSEHENTFFRDVVGYSIGT-LGIHRLGVFLAISAAFWSAVC 227
Query: 287 VV 288
++
Sbjct: 228 II 229
>sp|P51750|RCEL_RHOPH REACTION CENTER PROTEIN L CHAIN (PHOTOSYNTHETIC REACTION CENTER L
SUBUNIT)
Length = 255
Score = 53.5 bits (126), Expect = 4e-06
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GGLW + + + LRQ E+AR + + + AFS I ++++ +I PL W
Sbjct: 63 GGLWQLITICAIGRFCCWALRQVEIARKLGMGLHIPFAFSFAIFAYLALVVIRPLLLGAW 122
Query: 169 FFAPSFGVAAIFRFI--LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFED 226
+G+ + ++ + +Q H + NP HM+G+ + +HG+ + + L
Sbjct: 123 GHGXPYGILSHLDWVSNIGYQFLH-FHYNPAHMIGITFFFTNCMAFGMHGSIILSVL--- 178
Query: 227 GDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALG 286
NP + E+ N F+ + G + +H +F+ ++ + SA+
Sbjct: 179 ----------NPGKGEKVKGSEHENTFFRDVVGYSIGT-LGIHRLGVFLAISAAFWSAVC 227
Query: 287 VV 288
++
Sbjct: 228 II 229
>pdb|6PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg-420314 (Triazine) Complex)
pdb|1PRC|L Chain L, Photosynthetic Reaction Center
pdb|5PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Atrazine Complex)
pdb|4PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Stigmatellin Complex)
pdb|3PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Qb-Depleted)
pdb|2PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Ubiquinone-2 Complex)
pdb|7PRC|L Chain L, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg-420315 (Triazine) Complex)
prf||1308226A photosynthetic reaction center L [Rhodopseudomonas viridis]
Length = 273
Score = 53.5 bits (126), Expect = 4e-06
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 109 GGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGW 168
GG W + + I +MLR+ E++R + + + +AF PI +F + + PL W
Sbjct: 83 GGFWQAITVCALGAFISWMLREVEISRKLGIGWHVPLAFCVPIFMFCVLQVFRPLLLGSW 142
Query: 169 FFAPSFGVAAIFRFI-LFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDG 227
A +G+ + ++ F + NW NP HM V+ + A+ +HG + ++ G
Sbjct: 143 GHAFPYGILSHLDWVNNFGYQYLNWHYNPGHMSSVSFLFVNAMALGLHGGLI-LSVANPG 201
Query: 228 DG 229
DG
Sbjct: 202 DG 203
Database: nr
Posted date: Mar 14, 2001 1:25 PM
Number of letters in database: 201,912,487
Number of sequences in database: 640,428
Lambda K H
0.328 0.142 0.469
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147811680
Number of Sequences: 640428
Number of extensions: 6298807
Number of successful extensions: 17836
Number of sequences better than 10.0: 320
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 17166
Number of HSP's gapped (non-prelim): 332
length of query: 353
length of database: 201,912,487
effective HSP length: 46
effective length of query: 307
effective length of database: 172,452,799
effective search space: 52943009293
effective search space used: 52943009293
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 72 (32.5 bits)
Lotus japonicus(Cp)