BLAST2 result

BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33189.1	62 aa
         (62 letters)

Database: nr
           640,428 sequences; 201,912,487 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|11497522 ycf9 protein [Spinacia oleracea] >gi|7636103|emb|CAB...   117  1e-26
sp|Q32902|YCF9_PEA HYPOTHETICAL 6.6 KD PROTEIN (ORF 62) >gi|3430...   117  2e-26
gi|7525030 ycf9 [Arabidopsis thaliana] >gi|6686169|sp|P56790|YCF...   116  2e-26
emb|CAB67140.1| (AJ271079) Ycf9 protein [Oenothera elata subsp. ...   116  3e-26
gi|11465952 Ycf9 protein [Nicotiana tabacum] >gi|140318|sp|P0997...   115  5e-26
pir||T04410 hypothetical protein 62 - barley chloroplast >gi|102...   112  4e-25
sp|P08890|YCF9_WHEAT HYPOTHETICAL 6.5 KD PROTEIN (ORF 62) >gi|10...   112  4e-25
gi|11466772 ORF62 [Oryza sativa] >gi|140317|sp|P12194|YCF9_ORYSA...   111  1e-24
gi|11466700 ORF62 [Marchantia polymorpha] >gi|140316|sp|P09973|Y...   103  3e-22
emb|CAA25803.1| (X01647) open reading frame (ORF702) (aa 1-77) [...   103  3e-22
gi|11467178 hypothetical protein [Zea mays] >gi|3123113|sp|Q3330...   102  5e-22
gi|7524713 ORF62 [Pinus thunbergii] >gi|1175650|sp|P41642|YCF9_P...    93  4e-19
gi|11466407 hypothetical chloroplast RF9 [Mesostigma viride] >gi...    85  9e-17
gi|11467822 hypothetical chloroplast RF9 [Nephroselmis olivacea]...    82  1e-15
gi|7524820 ycf9 [Chlorella vulgaris] >gi|3025041|sp|P56313|YCF9_...    80  3e-15
sp|P92276|YCF9_CHLRE HYPOTHETICAL 6.6 KDA PROTEIN YCF9 >gi|74487...    78  1e-14
gi|11467347 ycf9 [Cyanophora paradoxa] >gi|140315|sp|P17159|YCF9...    67  3e-11
gi|11465782 hypothetical chloroplast ORF 9. [Porphyra purpurea] ...    64  3e-10
gi|11467024 ycf9 [Euglena gracilis] >gi|418362|sp|P32095|YCF9_EU...    63  4e-10
sp|P73528|YCF9_SYNY3 YCF9-LIKE PROTEIN >gi|7448751|pir||S77234 y...    60  3e-09
gi|11467708 hypothetical chloroplast RF9 [Guillardia theta] >gi|...    51  1e-06
emb|CAA10619.1| (AJ132263) Ycf9 protein [Skeletonema costatum]         37  0.032
gi|11467539 ORF61 [Odontella sinensis] >gi|1351786|sp|P49528|YCF...    35  0.095
gi|11465401 unknown [Cyanidium caldarium] >gi|6466304|gb|AAF1288...    35  0.12
gb|AAF35390.1|AF225988_1 (AF225988) voltage-gated sodium channel...    31  1.4
gi|7657544 sodium channel, voltage gated, type VIII, alpha polyp...    31  1.4
gi|6755410 sodium channel, voltage-gated, type VIII, alpha polyp...    31  1.8
gi|9507067 sodium channel, voltage-gated, type VIII, alpha polyp...    31  1.8
gb|AAC26014.1| (AF049239) voltage-gated sodium channel rPN4 [Rat...    31  1.8
gb|AAC52708.1| (U59964) Scn8a [Mus musculus]                           31  1.8
gb|AAC52242.1| (U26707) SCN8A [Mus musculus] >gi|1586351|prf||22...    31  1.8
pir||I56555 sodium channel protein 6 - rat >gi|829034|gb|AAC4205...    31  1.8
gb|AAD15789.1| (AF050736) voltage-gated sodium channel alpha sub...    30  3.2
pir||T41545 hypothetical transmembrane protein - fission yeast  ...    29  7.1
emb|CAA20374.2| (AL031307) hypothetical transmembrane protein [S...    29  7.1
sp|P57312|FTSW_BUCAI CELL DIVISION PROTEIN FTSW >gi|10038898|dbj...    29  9.3
gi|5835355 NADH dehydrogenase subunit 4 [Equus asinus] >gi|31225...    29  9.3
gi|5835117 NADH dehydrogenase subunit 4 [Equus caballus] >gi|135...    29  9.3

>gi|11497522 ycf9 protein [Spinacia oleracea]
 emb|CAB88723.1| (AJ400848) ycf9 protein [Spinacia oleracea]
          Length = 62

 Score =  117 bits (291), Expect = 1e-26
 Identities = 59/62 (95%), Positives = 61/62 (98%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKN+VFSGTSLW+ LVFLVGILNSL
Sbjct: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNIVFSGTSLWLGLVFLVGILNSL 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>sp|Q32902|YCF9_PEA HYPOTHETICAL 6.6 KD PROTEIN (ORF 62)
 gb|AAB59337.1| (M27309) open reading frame 62 [Pisum sativum]
          Length = 62

 Score =  117 bits (290), Expect = 2e-26
 Identities = 60/62 (96%), Positives = 60/62 (96%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQLAVFALI TSSILLISVPVVFASPDGWSSNKNVVFSGTSLWI LVFLVGILNSL
Sbjct: 1  MTIAFQLAVFALIVTSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>gi|7525030 ycf9 [Arabidopsis thaliana]
 sp|P56790|YCF9_ARATH HYPOTHETICAL 6.6 KDA PROTEIN YCF9
 dbj|BAA84382.1| (AP000423) ycf9 [Arabidopsis thaliana]
          Length = 62

 Score =  116 bits (289), Expect = 2e-26
 Identities = 60/62 (96%), Positives = 60/62 (96%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQLAVFALI TSSILLISVPVVFASPDGWSSNKNVVFSGTSLWI LVFLVGILNSL
Sbjct: 1  MTIAFQLAVFALIITSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>emb|CAB67140.1| (AJ271079) Ycf9 protein [Oenothera elata subsp. hookeri]
          Length = 62

 Score =  116 bits (288), Expect = 3e-26
 Identities = 59/62 (95%), Positives = 61/62 (98%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQLAVFALIATSS+LLISVPVVFASP+GWSSNKNVVFSGTSLWI LVFLVGILNSL
Sbjct: 1  MTIAFQLAVFALIATSSLLLISVPVVFASPEGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>gi|11465952 Ycf9 protein [Nicotiana tabacum]
 sp|P09974|YCF9_TOBAC HYPOTHETICAL 6.5 KD PROTEIN (ORF 62)
 pir||A05189 probable membrane protein - common tobacco chloroplast
 emb|CAA77349.1| (Z00044) Ycf9 protein [Nicotiana tabacum]
 prf||1211235Y membrane protein [Nicotiana tabacum]
          Length = 62

 Score =  115 bits (286), Expect = 5e-26
 Identities = 59/62 (95%), Positives = 60/62 (96%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MT+AFQLAVFALIATS ILLISVPVVFASPDGWSSNKNVVFSGTSLWI LVFLVGILNSL
Sbjct: 1  MTLAFQLAVFALIATSLILLISVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSL 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>pir||T04410 hypothetical protein 62 - barley chloroplast
 gb|AAA79707.1| (U37703) ORF 62 [Hordeum vulgare]
          Length = 70

 Score =  112 bits (278), Expect = 4e-25
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQLAVFALIATSS+L+ISVP+VFASPDGWS+NKNVVFSGTSLWI LVFLV ILNSL
Sbjct: 9  MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 68

Query: 61 IS 62
          IS
Sbjct: 69 IS 70


>sp|P08890|YCF9_WHEAT HYPOTHETICAL 6.5 KD PROTEIN (ORF 62)
 pir||S07166 hypothetical protein 62 - wheat chloroplast
 emb|CAA26401.1| (X02560) ycf9 unidentified reading frame (aa 1-62) [Triticum
          aestivum]
 dbj|BAA78036.1| (AB027572) ORF62 [Triticum aestivum]
          Length = 62

 Score =  112 bits (278), Expect = 4e-25
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQLAVFALIATSS+L+ISVP+VFASPDGWS+NKNVVFSGTSLWI LVFLV ILNSL
Sbjct: 1  MTIAFQLAVFALIATSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>gi|11466772 ORF62 [Oryza sativa]
 sp|P12194|YCF9_ORYSA HYPOTHETICAL 6.6 KD PROTEIN (ORF 62)
 pir||JQ0208 hypothetical 6.6K protein (psbC-trnG intergenic region) - rice
          chloroplast
 emb|CAA34015.1| (X15901) ORF62 [Oryza sativa]
 prf||1603356J ORF 62 [Oryza sativa]
          Length = 62

 Score =  111 bits (274), Expect = 1e-24
 Identities = 55/62 (88%), Positives = 59/62 (94%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQLAVFALI TSS+L+ISVP+VFASPDGWS+NKNVVFSGTSLWI LVFLV ILNSL
Sbjct: 1  MTIAFQLAVFALIVTSSVLVISVPLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>gi|11466700 ORF62 [Marchantia polymorpha]
 sp|P09973|YCF9_MARPO HYPOTHETICAL 6.5 KD PROTEIN (ORF 62)
 pir||A05040 hypothetical protein 62 - liverwort (Marchantia polymorpha)
          chloroplast
 emb|CAA28082.1| (X04465) ORF62 [Marchantia polymorpha]
          Length = 62

 Score =  103 bits (254), Expect = 3e-22
 Identities = 52/62 (83%), Positives = 55/62 (87%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQLAVFALIA S +L+I VPVV ASP+GWSSNKNVVFSG SLWI LVFLVGILNS 
Sbjct: 1  MTIAFQLAVFALIAISFLLVIGVPVVLASPEGWSSNKNVVFSGASLWIGLVFLVGILNSF 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>emb|CAA25803.1| (X01647) open reading frame (ORF702) (aa 1-77) [Marchantia
          polymorpha]
          Length = 77

 Score =  103 bits (254), Expect = 3e-22
 Identities = 52/62 (83%), Positives = 55/62 (87%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQLAVFALIA S +L+I VPVV ASP+GWSSNKNVVFSG SLWI LVFLVGILNS 
Sbjct: 16 MTIAFQLAVFALIAISFLLVIGVPVVLASPEGWSSNKNVVFSGASLWIGLVFLVGILNSF 75

Query: 61 IS 62
          IS
Sbjct: 76 IS 77


>gi|11467178 hypothetical protein [Zea mays]
 sp|Q33300|YCF9_MAIZE HYPOTHETICAL 6.6 KD PROTEIN (ORF 62)
 pir||S58538 hypothetical protein 62 - maize chloroplast
 emb|CAA60272.1| (X86563) hypothetical protein [Zea mays]
          Length = 62

 Score =  102 bits (252), Expect = 5e-22
 Identities = 52/62 (83%), Positives = 56/62 (89%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          M IAFQLAVFALIATSS+L+I   +VFASPDGWS+NKNVVFSGTSLWI LVFLV ILNSL
Sbjct: 1  MNIAFQLAVFALIATSSVLVIRGHLVFASPDGWSNNKNVVFSGTSLWIGLVFLVAILNSL 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>gi|7524713 ORF62 [Pinus thunbergii]
 sp|P41642|YCF9_PINTH HYPOTHETICAL 6.5 KD PROTEIN (ORF 62)
 pir||T07546 hypothetical protein 62 - Japanese black pine chloroplast
 dbj|BAA04422.1| (D17510) ORF62 [Pinus thunbergii]
          Length = 62

 Score = 92.8 bits (227), Expect = 4e-19
 Identities = 47/62 (75%), Positives = 50/62 (79%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MTIAFQ AVFALIA S +L+I VPV  ASPDGWSS+KNVVFSG SLWI  V  VGILNS 
Sbjct: 1  MTIAFQSAVFALIAISFLLVIGVPVALASPDGWSSSKNVVFSGVSLWIGSVLFVGILNSF 60

Query: 61 IS 62
          IS
Sbjct: 61 IS 62


>gi|11466407 hypothetical chloroplast RF9 [Mesostigma viride]
 sp|Q9MUP9|YCF9_MESVI HYPOTHETICAL 6.6 KDA PROTEIN (RF9)
 gb|AAF43851.1|AF166114_63 (AF166114) hypothetical chloroplast RF9 [Mesostigma viride]
          Length = 62

 Score = 85.0 bits (207), Expect = 9e-17
 Identities = 40/61 (65%), Positives = 48/61 (78%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          M  AFQL V ALIATS +++I VPV+FASP+GW  +KN VFSG  LWI+LVF VGILNS 
Sbjct: 1  MLAAFQLTVLALIATSFLMVIGVPVIFASPEGWVKSKNFVFSGALLWISLVFAVGILNSF 60

Query: 61 I 61
          +
Sbjct: 61 V 61


>gi|11467822 hypothetical chloroplast RF9 [Nephroselmis olivacea]
 gb|AAD54844.1|AF137379_67 (AF137379) hypothetical chloroplast RF9 [Nephroselmis olivacea]
          Length = 62

 Score = 81.5 bits (198), Expect = 1e-15
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MT  FQLA+FAL+A S +L++ VPV FA+P+GW+  K  VF G S W ALVF VG+LNSL
Sbjct: 1  MTFIFQLALFALVALSFLLVVGVPVAFAAPEGWNVTKGYVFQGVSAWFALVFTVGVLNSL 60

Query: 61 IS 62
          ++
Sbjct: 61 VA 62


>gi|7524820 ycf9 [Chlorella vulgaris]
 sp|P56313|YCF9_CHLVU HYPOTHETICAL 6.8 KDA PROTEIN YCF9
 pir||T07250 hypothetical protein ycf9 - Chlorella vulgaris chloroplast
 dbj|BAA57897.1| (AB001684) ycf9 [Chlorella vulgaris]
          Length = 62

 Score = 80.0 bits (194), Expect = 3e-15
 Identities = 35/61 (57%), Positives = 46/61 (75%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          M + FQLA+FA I  S +L++ VPVV A+P+GW+ NK+ VFSG  +W  LVFLVGILNS 
Sbjct: 1  MLLIFQLALFAFIVVSFLLVVGVPVVLATPEGWAENKSTVFSGIGIWFLLVFLVGILNSF 60

Query: 61 I 61
          +
Sbjct: 61 V 61


>sp|P92276|YCF9_CHLRE HYPOTHETICAL 6.6 KDA PROTEIN YCF9
 pir||T08028 ycf9 protein - Chlamydomonas reinhardtii chloroplast
 gb|AAB39940.1| (U81552) hypothetical ycf9 protein [Chlamydomonas reinhardtii]
          Length = 62

 Score = 78.0 bits (189), Expect = 1e-14
 Identities = 36/61 (59%), Positives = 46/61 (75%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          MT   Q+A+ ALI  S  L++ VPVVFA+P+GW+ NK  VFSG SLW+ LVF+VGILNS 
Sbjct: 1  MTSILQVALLALIFVSFALVVGVPVVFATPNGWTDNKGAVFSGLSLWLLLVFVVGILNSF 60

Query: 61 I 61
          +
Sbjct: 61 V 61


>gi|11467347 ycf9 [Cyanophora paradoxa]
 sp|P17159|YCF9_CYAPA HYPOTHETICAL 6.9 KDA PROTEIN YCF9
 pir||S14712 hypothetical protein 65 - Cyanophora paradoxa cyanelle
 emb|CAA35786.1| (X51421) ORF65 (AA 1-65) [Cyanophora paradoxa]
 gb|AAA81235.1| (U30821) ycf9 gene product [Cyanophora paradoxa]
          Length = 65

 Score = 66.7 bits (160), Expect = 3e-11
 Identities = 26/62 (41%), Positives = 47/62 (74%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          M IAFQ AVFAL+  S +L+++VPV  ASP  W  ++ ++++G +LW +L+ ++G+L+S+
Sbjct: 1  MLIAFQGAVFALVLLSFVLIVAVPVALASPGEWERSQRLIYAGAALWTSLIIVIGVLDSV 60

Query: 61 IS 62
          ++
Sbjct: 61 VA 62


>gi|11465782 hypothetical chloroplast ORF 9. [Porphyra purpurea]
 sp|P51316|YCF9_PORPU HYPOTHETICAL 6.5 KD PROTEIN YCF9 (ORF62)
 pir||S73237 hypothetical protein 9 - red alga (Porphyra purpurea) chloroplast
 gb|AAC08202.1| (U38804) hypothetical chloroplast ORF 9. [Porphyra purpurea]
          Length = 62

 Score = 63.6 bits (152), Expect = 3e-10
 Identities = 28/61 (45%), Positives = 40/61 (64%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          M IA QL V  LI  S+IL++ VPVV ASP  W  +K ++++G  LW  LV +  ++NSL
Sbjct: 1  MIIAIQLLVLLLITLSTILVVGVPVVLASPGQWEQSKGLIYTGAGLWTGLVIVTSLVNSL 60

Query: 61 I 61
          +
Sbjct: 61 V 61


>gi|11467024 ycf9 [Euglena gracilis]
 sp|P32095|YCF9_EUGGR HYPOTHETICAL 7.6 KDA PROTEIN (ORF 65)
 pir||S34538 hypothetical protein 65 (rps18 3' region) - Euglena gracilis
          chloroplast
 emb|CAA50118.1| (X70810) ycf9 [Euglena gracilis]
          Length = 65

 Score = 62.8 bits (150), Expect = 4e-10
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 2  TIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          T  FQ  V ALI  S IL++++PV+FASP GW +NK+ ++     W  LVFL+GIL+ +
Sbjct: 5  TFTFQALVLALIIFSFILVLTLPVIFASPKGWENNKSRIWLACRFWFFLVFLIGILDGI 63


>sp|P73528|YCF9_SYNY3 YCF9-LIKE PROTEIN
 pir||S77234 ycf9 protein - Synechocystis sp. (strain PCC 6803)
 dbj|BAA17568.1| (D90907) Ycf9 [Synechocystis sp.]
          Length = 107

 Score = 60.1 bits (143), Expect = 3e-09
 Identities = 24/61 (39%), Positives = 42/61 (68%)

Query: 1   MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
           M+I FQ+A+ AL+  S ++++ VPV +ASP  W  +K +++ G+ +W  LV +V +LN L
Sbjct: 46  MSIVFQIALAALVLFSFVMVVGVPVAYASPQNWDRSKPLLYLGSGIWAILVIVVALLNFL 105

Query: 61  I 61
           +
Sbjct: 106 V 106


>gi|11467708 hypothetical chloroplast RF9 [Guillardia theta]
 sp|O78503|YCF9_GUITH HYPOTHETICAL 6.7 KD PROTEIN YCF9
 gb|AAC35694.1| (AF041468) hypothetical chloroplast RF9 [Guillardia theta]
          Length = 62

 Score = 51.2 bits (120), Expect = 1e-06
 Identities = 23/61 (37%), Positives = 32/61 (51%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          M    QL V  LI  S  L++ VPV+  SP  W  +KN+V++   LW  LV +    NS 
Sbjct: 1  MVTILQLLVSILILLSFALVVGVPVILVSPGEWERSKNLVYASAGLWFGLVIVTAAFNSF 60

Query: 61 I 61
          +
Sbjct: 61 V 61


>emb|CAA10619.1| (AJ132263) Ycf9 protein [Skeletonema costatum]
          Length = 61

 Score = 36.7 bits (83), Expect = 0.032
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 12 LIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSLIS 62
          L+  S  L+++VPV  A+P  W S+K+       LW+ LV  +   + + S
Sbjct: 9  LVLISLALVVTVPVALATPGEWESSKDQFNKAFQLWVGLVVAIATADGISS 59


>gi|11467539 ORF61 [Odontella sinensis]
 sp|P49528|YCF9_ODOSI HYPOTHETICAL 6.2 KD PROTEIN YCF9 (ORF61)
 pir||S78344 conserved hypothetical protein 61 - Odontella sinensis
          chloroplast
 emb|CAA91717.1| (Z67753) ORF61 [Odontella sinensis]
          Length = 61

 Score = 35.2 bits (79), Expect = 0.095
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 8  AVFALIATSSI-LLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSLIS 62
          A+ AL+   S+ L+I+VPV  A+P  W ++K+        W+ LV ++   + + S
Sbjct: 4  ALVALLVFISLGLVITVPVALATPGEWEASKSTFTRAFQAWVGLVIVIAAADGISS 59


>gi|11465401 unknown [Cyanidium caldarium]
 gb|AAF12886.1|AF022186_8 (AF022186) unknown [Cyanidium caldarium]
          Length = 61

 Score = 34.8 bits (78), Expect = 0.12
 Identities = 15/61 (24%), Positives = 33/61 (53%)

Query: 1  MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSL 60
          M+I  Q  + ++I  S IL+I VP   +   GW  +K+   +  ++W +++ + G ++  
Sbjct: 1  MSILLQFFIISIIFFSLILVILVPSQLSLQSGWQVSKSRFIALFTIWASMILISGFISVF 60

Query: 61 I 61
          +
Sbjct: 61 V 61


>gb|AAF35390.1|AF225988_1 (AF225988) voltage-gated sodium channel alpha subunit [Homo
           sapiens]
          Length = 1980

 Score = 31.3 bits (69), Expect = 1.4
 Identities = 15/47 (31%), Positives = 27/47 (56%)

Query: 8   AVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLV 54
           +VF++I   +IL   V + F++P  WS N    F+G   + +LV ++
Sbjct: 132 SVFSMIIMCTILTNCVFMTFSNPPDWSKNVEYTFTGIYTFESLVKII 178


>gi|7657544 sodium channel, voltage gated, type VIII, alpha polypeptide; motor
           endplate disease [Homo sapiens]
 ref|XP_006838.1| sodium channel, voltage gated, type VIII, alpha polypeptide [Homo
           sapiens]
 dbj|BAA78033.1| (AB027567) sodium channel [Homo sapiens]
          Length = 1980

 Score = 31.3 bits (69), Expect = 1.4
 Identities = 15/47 (31%), Positives = 27/47 (56%)

Query: 8   AVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLV 54
           +VF++I   +IL   V + F++P  WS N    F+G   + +LV ++
Sbjct: 132 SVFSMIIMCTILTNCVFMTFSNPPDWSKNVEYTFTGIYTFESLVKII 178


>gi|6755410 sodium channel, voltage-gated, type VIII, alpha polypeptide [Mus
           musculus]
 gb|AAD20438.1| (AF049617) neuronal voltage-gated sodium channel alpha subunit [Mus
           musculus]
          Length = 1978

 Score = 30.9 bits (68), Expect = 1.8
 Identities = 15/47 (31%), Positives = 27/47 (56%)

Query: 8   AVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLV 54
           +VF++I   +IL   V + F++P  WS N    F+G   + +LV ++
Sbjct: 132 SVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKII 178


>gi|9507067 sodium channel, voltage-gated, type VIII, alpha polypeptide [Rattus
           norvegicus]
 gb|AAC26015.1| (AF049240) voltage-gated sodium channel variant rPN4a [Rattus
           norvegicus]
          Length = 1988

 Score = 30.9 bits (68), Expect = 1.8
 Identities = 15/47 (31%), Positives = 27/47 (56%)

Query: 8   AVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLV 54
           +VF++I   +IL   V + F++P  WS N    F+G   + +LV ++
Sbjct: 132 SVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKII 178


>gb|AAC26014.1| (AF049239) voltage-gated sodium channel rPN4 [Rattus norvegicus]
          Length = 1978

 Score = 30.9 bits (68), Expect = 1.8
 Identities = 15/47 (31%), Positives = 27/47 (56%)

Query: 8   AVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLV 54
           +VF++I   +IL   V + F++P  WS N    F+G   + +LV ++
Sbjct: 132 SVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKII 178


>gb|AAC52708.1| (U59964) Scn8a [Mus musculus]
          Length = 113

 Score = 30.9 bits (68), Expect = 1.8
 Identities = 15/47 (31%), Positives = 27/47 (56%)

Query: 8  AVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLV 54
          +VF++I   +IL   V + F++P  WS N    F+G   + +LV ++
Sbjct: 40 SVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKII 86


>gb|AAC52242.1| (U26707) SCN8A [Mus musculus]
 prf||2203417A voltage gated Na channel Scn8a [Mus musculus]
          Length = 1732

 Score = 30.9 bits (68), Expect = 1.8
 Identities = 15/47 (31%), Positives = 27/47 (56%)

Query: 8   AVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLV 54
           +VF++I   +IL   V + F++P  WS N    F+G   + +LV ++
Sbjct: 132 SVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKII 178


>pir||I56555 sodium channel protein 6 - rat
 gb|AAC42059.1| (L39018) sodium channel protein 6 [Rattus norvegicus]
 prf||2117364A voltage-gated Na channel NaCh6 [Rattus norvegicus]
          Length = 1976

 Score = 30.9 bits (68), Expect = 1.8
 Identities = 15/47 (31%), Positives = 27/47 (56%)

Query: 8   AVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLV 54
           +VF++I   +IL   V + F++P  WS N    F+G   + +LV ++
Sbjct: 134 SVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKII 180


>gb|AAD15789.1| (AF050736) voltage-gated sodium channel alpha subunit; SCN8A [Homo
           sapiens]
          Length = 1980

 Score = 30.1 bits (66), Expect = 3.2
 Identities = 14/47 (29%), Positives = 27/47 (56%)

Query: 8   AVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLV 54
           ++F++I   +IL   V + F++P  WS N    F+G   + +LV ++
Sbjct: 132 SLFSMIIMCTILTNCVFMTFSNPPDWSKNVEYTFTGIYTFESLVKII 178


>pir||T41545 hypothetical transmembrane protein - fission yeast
           (Schizosaccharomyces pombe)
          Length = 646

 Score = 29.0 bits (63), Expect = 7.1
 Identities = 20/59 (33%), Positives = 30/59 (49%), Gaps = 1/59 (1%)

Query: 3   IAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSLI 61
           IAF LA+   +  + IL+I   +VF+    WS    +   GT+ W A+ + V  L  LI
Sbjct: 502 IAFDLAIIPKVIIAIILIIIQGLVFSFMALWSLWNFITMLGTA-WPAISYTVPWLRRLI 559


>emb|CAA20374.2| (AL031307) hypothetical transmembrane protein [Schizosaccharomyces
           pombe]
          Length = 687

 Score = 29.0 bits (63), Expect = 7.1
 Identities = 20/59 (33%), Positives = 30/59 (49%), Gaps = 1/59 (1%)

Query: 3   IAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGILNSLI 61
           IAF LA+   +  + IL+I   +VF+    WS    +   GT+ W A+ + V  L  LI
Sbjct: 543 IAFDLAIIPKVIIAIILIIIQGLVFSFMALWSLWNFITMLGTA-WPAISYTVPWLRRLI 600


>sp|P57312|FTSW_BUCAI CELL DIVISION PROTEIN FTSW
 dbj|BAB12933.1| (AP001118) cell division protein ftsW [Buchnera sp. APS]
          Length = 399

 Score = 28.6 bits (62), Expect = 9.3
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 6   QLAVFALIATSSILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVG 55
           ++  F LI   S + +  P++F     W  N N++   + + + LV L+G
Sbjct: 70  EIFYFFLIFLLSFIFLRTPIIF-----WEKNSNIILIISIVLLVLVLLIG 114


>gi|5835355 NADH dehydrogenase subunit 4 [Equus asinus]
 sp|P92484|NU4M_EQUAS NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4
 pir||T11372 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - donkey
          mitochondrion (fragment)
 emb|CAA66023.1| (X97337) NADH dehydrogenase subunit 4 [Equus asinus]
          Length = 459

 Score = 28.6 bits (62), Expect = 9.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 18 ILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGI 56
          +L I +P +   P  W S KN+++  T+ +  L+ L+ +
Sbjct: 1  MLKIIIPTIMLMPLTWLSKKNMIWINTTTYSLLISLISL 39


>gi|5835117 NADH dehydrogenase subunit 4 [Equus caballus]
 sp|P48655|NU4M_HORSE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4
 pir||T11866 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - horse
          mitochondrion (fragment)
 emb|CAA56088.1| (X79547) NADH dehydrogenase [Equus caballus]
          Length = 459

 Score = 28.6 bits (62), Expect = 9.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 18 ILLISVPVVFASPDGWSSNKNVVFSGTSLWIALVFLVGI 56
          +L I +P +   P  W S KN+++  T+ +  L+ L+ +
Sbjct: 1  MLKIIIPTIMLMPLTWLSKKNMIWINTTTYSLLISLISL 39


  Database: nr
    Posted date:  Mar 14, 2001  1:25 PM
  Number of letters in database: 201,912,487
  Number of sequences in database:  640,428
  
Lambda     K      H
   0.327    0.137    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22148230
Number of Sequences: 640428
Number of extensions: 639103
Number of successful extensions: 2844
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2809
Number of HSP's gapped (non-prelim): 38
length of query: 62
length of database: 201,912,487
effective HSP length: 41
effective length of query: 21
effective length of database: 175,654,939
effective search space: 3688753719
effective search space used: 3688753719
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 62 (28.6 bits)