BLAST2 result
BLASTP 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33183.1 158 aa
(158 letters)
Database: nr
640,428 sequences; 201,912,487 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11497531 NADH dehydrogenase 19kDa subunit [Spinacia oleracea]... 324 5e-88
emb|CAB67132.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 323 7e-88
gi|11465960 NADH dehydrogenase 30kD subunit [Nicotiana tabacum] ... 321 4e-87
sp|P92309|NUGC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J... 311 3e-84
gi|7525036 NADH dehydrogenase subunit [Arabidopsis thaliana] >gi... 306 9e-83
ref|NP_043028.1| ndhJ [Zea mays] >gi|128855|sp|P19124|NUGC_MAIZE... 294 5e-79
gi|11466790 ORF159 [Oryza sativa] >gi|128857|sp|P12200|NUGC_ORYS... 293 7e-79
gi|11466705 ORF169 [Marchantia polymorpha] >gi|128856|sp|P12199|... 278 3e-74
gi|11466395 subunit J of NADH-plastoquinoneoxidoreductase [Mesos... 253 8e-67
emb|CAB45641.1| (AJ012180) NDH-J protein [Anabaena PCC7120] 199 2e-50
pir||S75826 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain J... 197 8e-50
sp|P19125|NUGC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J... 197 8e-50
emb|CAB45648.1| (AJ012181) NDH-J protein [Anabaena variabilis] 192 3e-48
sp|P31174|NUGC_SOYBN NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J... 184 5e-46
emb|CAA45613.1| (X64329) orf158/159 [Glycine max] 184 5e-46
sp|Q44241|NUGC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J... 161 5e-39
pir||D71838 nadh oxidoreductase I - Helicobacter pylori (strain ... 76 2e-13
pir||F64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 76 2e-13
pir||T34622 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 76 3e-13
sp|Q56219|NQO5_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 (NAD... 74 1e-12
gb|AAG57415.1|AE005460_9 (AE005460) NADH dehydrogenase I chain C... 73 2e-12
emb|CAC12097.1| (AL445066) NADH dehydrogenase, chain C related p... 73 2e-12
sp|P33599|NUCD_ECOLI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUI... 73 2e-12
pir||S37060 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain C... 73 2e-12
gb|AAG19139.1| (AE005011) NADH dehydrogenase/oxidoreductase; Ndh... 73 3e-12
gb|AAF65733.1|AF228525_3 (AF228525) F420H2 dehydrogenase subunit... 73 3e-12
sp|P95179|NUOC_MYCTU NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINO... 71 6e-12
gb|AAC38642.1| (AF057063) NADH dehydrogenase chain C [Pectobacte... 71 8e-12
gb|AAF97799.1|AF281148_3 (AF281148) NADH dehydrogenase I subunit... 71 1e-11
pir||D83316 NADH dehydrogenase I chain C,D PA2639 [imported] - P... 70 1e-11
sp|P57254|NUCD_BUCAI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUI... 68 5e-11
pir||G81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 68 9e-11
sp|O68854|NUC1_RHIME NADH DEHYDROGENASE I CHAIN C 1 (NADH-UBIQUI... 65 6e-10
sp|P56896|NUC2_RHIME NADH DEHYDROGENASE I CHAIN C 2 (NADH-UBIQUI... 65 6e-10
gb|AAC12756.1| (AF055637) NADH-ubiquinone oxidoreductase subunit... 65 6e-10
emb|CAB51622.1| (AJ245398) nuoC1 [Sinorhizobium meliloti] 64 8e-10
pir||B75388 NADH dehydrogenase I, C subunit - Deinococcus radiod... 62 5e-09
gb|AAA03037.1| (M93015) NADH dehydrogenase [Paracoccus denitrifi... 61 9e-09
sp|P29917|NQO5_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 (NAD... 61 9e-09
emb|CAC08254.1| (AL392146) putative dehydrogenase (fragment) [St... 60 2e-08
sp|Q9JX80|NUOC_NEIMA NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINO... 60 2e-08
sp|Q9K1C1|NUOC_NEIMB NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINO... 60 2e-08
pir||A72621 probable NADH-plastoquinone oxidoreductase subunit J... 60 2e-08
gi|11466593 NADH dehydrogenase subunit 9 [Rhodomonas salina] >gi... 60 2e-08
gi|11465870 NADH dehydrogenase subunit 9 [Ochromonas danica] >gi... 59 3e-08
gb|AAF03192.1|AF110138_24 (AF110138) NADH dehydrogenase subunit ... 58 6e-08
gi|11467084 NADH dehydrogenase, subunit 9 [Acanthamoeba castella... 57 1e-07
gb|AAA32025.2| (L16863) NADH dehydrogenase [Phytophthora megaspe... 57 2e-07
gi|11466534 NADH dehydrogenase, subunit 9 [Reclinomonas american... 57 2e-07
gi|11466473 NADH dehydrogenase subunit 9 [Chrysodidymus synuroid... 56 3e-07
pir||D70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 56 3e-07
emb|CAB65522.1| (AJ249784) NUGM protein [Yarrowia lipolytica] 55 5e-07
gi|7524986 NADH dehydrogenase subunit 9 [Dictyostelium discoideu... 55 5e-07
gb|AAF86494.1|AF279447_1 (AF279447) NADH dehydrogenase subunit 9... 55 7e-07
pir||S39072 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 55 7e-07
gi|9695380 NADH dehydrogenase subunit 9 [Phytophthora infestans]... 55 7e-07
sp|O84971|NUOC_RHOCA NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINO... 55 7e-07
sp|Q34011|NUGM_BETWE NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNI... 55 7e-07
sp|Q33994|NUGM_BETTR NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNI... 55 7e-07
sp|Q37787|NUGM_BETVU NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNI... 55 7e-07
pir||T25880 hypothetical protein T10E9.7 - Caenorhabditis elegan... 55 7e-07
sp|Q00673|NUGM_CANMA PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 30.... 55 7e-07
gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, put... 54 9e-07
pir||F70349 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 53 2e-06
sp|P23710|NUGM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 30.4 KD SUBU... 53 2e-06
gb|AAG23682.1|AF288091_27 (AF288091) NADH dehydrogenase subunit ... 53 3e-06
gb|AAF86496.1|AF279449_1 (AF279449) NADH dehydrogenase subunit 9... 53 3e-06
sp|P34944|NUGM_MARPO NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNI... 53 3e-06
gi|11467145 ORF212 [Marchantia polymorpha] >gi|282772|pir||S2599... 53 3e-06
pir||E82821 NADH-ubiquinone oxidoreductase, NQO5 subunit XF0307 ... 52 5e-06
pir||T43501 hypothetical protein DKFZp586K0821.1 - human (fragme... 51 8e-06
gb|AAD40386.1| (AF100743) NADH-Ubiquinone reductase [Homo sapiens] 51 8e-06
gi|4758788 NADH dehydrogenase (ubiquinone) Fe-S protein 3 (30kD)... 51 8e-06
gi|11497471 NADH dehydrogenase (ubiquinone), subunit 9 [Protothe... 51 8e-06
gb|AAA30663.1| (M58469) NADH dehydrogenase (ubiquinone) [Bos tau... 51 8e-06
sp|P23709|NUGM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 30 KD SUBUNI... 51 8e-06
dbj|BAA07215.1| (D38018) NADH dehydrogenase subunit 9 [Beta webb... 49 3e-05
dbj|BAA07214.1| (D38017) NADH dehydrogenase subunit 9 [Beta trig... 49 3e-05
gi|9838362 NADH dehydrogenase subunit 9 [Beta vulgaris] >gi|3916... 49 3e-05
dbj|BAB22149.1| (AK002501) putative [Mus musculus] 48 5e-05
gi|11466220 NADH dehydrogenase subunit 9 [Naegleria gruberi] >gi... 48 5e-05
gi|11466318 NADH dehydrogenase subunit 9 [Cafeteria roenbergensi... 48 7e-05
gb|AAF47723.1| (AE003477) CG12079 gene product [Drosophila melan... 46 2e-04
emb|CAA69753.3| (Y08501) NADH dehydrogenase subunit 9 [Arabidops... 46 3e-04
pir||E75060 hydrogenase-4 component g (EC 1.-.-.-) PAB1394 - Pyr... 46 3e-04
emb|CAA49376.1| (X69720) 30 kDa subunit of complex I NADH dehydr... 46 3e-04
gb|AAF86492.1|AF279445_1 (AF279445) NADH dehydrogenase subunit 9... 45 5e-04
gb|AAF86491.1|AF279444_1 (AF279444) NADH dehydrogenase subunit 9... 45 5e-04
gb|AAF86490.1|AF279443_1 (AF279443) NADH dehydrogenase subunit 9... 45 5e-04
sp|P80261|NUGM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNI... 45 5e-04
sp|Q95748|NUGM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 27 KDA SUBUN... 45 6e-04
sp|Q35322|NUGM_ORYSA NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNI... 45 6e-04
gi|11466629 NADH dehydrogenase subunit 9 [Malawimonas jakobiform... 43 0.002
pir||C75115 hydrogenase related PAB1891 - Pyrococcus abyssi (str... 43 0.002
pir||E72281 hypothetical protein TM1215 - Thermotoga maritima (s... 41 0.007
pir||G70749 probable hycE protein - Mycobacterium tuberculosis (... 41 0.007
sp|Q9ZDH3|NUOC_RICPR NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINO... 41 0.012
pir||B75114 probable NADH dehydrogenase I, chain C PAB0494 - Pyr... 40 0.015
pir||F71017 hypothetical protein PH1435 - Pyrococcus horikoshii ... 39 0.026
gb|AAG57828.1|AE005500_7 (AE005500) large subunit of hydrogenase... 39 0.045
sp|P16431|HYCE_ECOLI FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (... 38 0.059
dbj|BAB08565.1| (AB015479) gene_id:MTE17.19~pir||T04792~similar ... 36 0.23
gb|AAG57597.1|AE005478_7 (AE005478) hydrogenase 4 subunit [Esche... 34 1.5
dbj|BAA16375.1| (D90877) FORMATE HYDROGENLYASE SUBUNIT 5 PRECURS... 34 1.5
sp|P77329|HYFG_ECOLI HYDROGENASE-4 COMPONENT G >gi|7432639|pir||... 34 1.5
gb|AAG60816.1|AF322012_121 (AF322013) ID254 [Bradyrhizobium japo... 32 3.4
pir||T24335 hypothetical protein T01H3.5 - Caenorhabditis elegan... 31 9.9
>gi|11497531 NADH dehydrogenase 19kDa subunit [Spinacia oleracea]
emb|CAB88732.1| (AJ400848) NADH dehydrogenase 19kDa subunit [Spinacia oleracea]
Length = 158
Score = 324 bits (821), Expect = 5e-88
Identities = 147/158 (93%), Positives = 152/158 (96%)
Query: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDV+
Sbjct: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVA 60
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
PGGLLASVYHLTRIE G+ QPEEVCIK+F PR NPRIPS+FWVWKSADFQERESYDM GI
Sbjct: 61 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRRNPRIPSVFWVWKSADFQERESYDMFGI 120
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
SYDNHPRLKRILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct: 121 SYDNHPRLKRILMPESWIGWPLRKDYIVPNFYEIQDAY 158
>emb|CAB67132.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit J [Oenothera
elata subsp. hookeri]
Length = 158
Score = 323 bits (820), Expect = 7e-88
Identities = 147/158 (93%), Positives = 152/158 (96%)
Query: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDV+
Sbjct: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVA 60
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
PGGLLASVYHLTRIE G+ Q EEVCIK+F PRNNPRIPS+FWVWKSADFQERESYDMLGI
Sbjct: 61 PGGLLASVYHLTRIEYGVDQAEEVCIKVFAPRNNPRIPSVFWVWKSADFQERESYDMLGI 120
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
YDNHPRLKRILMPESWIGWPLRKDYI PNFYEIQDAH
Sbjct: 121 RYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
>gi|11465960 NADH dehydrogenase 30kD subunit [Nicotiana tabacum]
sp|P12201|NUGC_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J (ORF 158)
pir||A05194 hypothetical protein 158 - common tobacco chloroplast
emb|CAA77356.1| (Z00044) NADH dehydrogenase 30kD subunit [Nicotiana tabacum]
prf||1211235AJ ORF 158 [Nicotiana tabacum]
Length = 158
Score = 321 bits (813), Expect = 4e-87
Identities = 145/158 (91%), Positives = 150/158 (94%)
Query: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
MQGRLSAWLVKHGL+HRSLGFDYQGIETLQIKPEDWHSIAVI YVYGYNYLRSQCAYDV+
Sbjct: 1 MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVYGYNYLRSQCAYDVA 60
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
PGGLLASVYHLTRIE G+ QPEEVCIK+F R NPRIPS+FWVWKS DFQERESYDMLGI
Sbjct: 61 PGGLLASVYHLTRIEDGVDQPEEVCIKVFASRRNPRIPSVFWVWKSVDFQERESYDMLGI 120
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
SYDNHPRLKRILMPESWIGWPLRKDYI PNFYEIQDAH
Sbjct: 121 SYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
>sp|P92309|NUGC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J
pir||T09639 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain J - yellow
lupine chloroplast
gb|AAB86904.1| (U85664) NADH plastiquinone oxidoreductase subunit J [Lupinus
luteus]
Length = 158
Score = 311 bits (789), Expect = 3e-84
Identities = 145/158 (91%), Positives = 148/158 (92%)
Query: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
MQGRLSAWLVKHGL+HRSLGFDYQGIETLQIKPE WHSIAVILYVYGYNYLRSQCAYDV+
Sbjct: 1 MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEAWHSIAVILYVYGYNYLRSQCAYDVA 60
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
PGGLLASVYHLTRIECGI QPEEVCIK+FV IPSIFWVWKSADFQERESYDMLGI
Sbjct: 61 PGGLLASVYHLTRIECGIDQPEEVCIKVFVQGKILGIPSIFWVWKSADFQERESYDMLGI 120
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
SY NHPRLKRILMPESWIGWPLRKDYI PNFYEIQDAH
Sbjct: 121 SYYNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
>gi|7525036 NADH dehydrogenase subunit [Arabidopsis thaliana]
sp|P56754|NUGC_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J
dbj|BAA84388.1| (AP000423) NADH dehydrogenase subunit [Arabidopsis thaliana]
Length = 158
Score = 306 bits (776), Expect = 9e-83
Identities = 139/158 (87%), Positives = 147/158 (92%)
Query: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDV+
Sbjct: 1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVA 60
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
PGGLLASVYHLTRIE G+ Q EEVCIK+F R+NPRIPS+FWVWKS DFQERESYDMLGI
Sbjct: 61 PGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGI 120
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
+YD+HPRLKRILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct: 121 TYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
>ref|NP_043028.1| ndhJ [Zea mays]
sp|P19124|NUGC_MAIZE NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J (ORF 159)
pir||S58555 ndhJ protein - maize chloroplast
emb|CAA35483.1| (X17438) ORF 159 (AA 1 - 159) [Zea mays]
emb|CAA60289.1| (X86563) ndhJ [Zea mays]
Length = 159
Score = 294 bits (744), Expect = 5e-79
Identities = 133/157 (84%), Positives = 145/157 (91%)
Query: 2 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSP 61
QG LS WLVKH +VHRSLGFD++G+ETLQIK DW SIAVILYVYGYNYLRSQCAYDV+P
Sbjct: 3 QGWLSNWLVKHDVVHRSLGFDHRGVETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAP 62
Query: 62 GGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGIS 121
GG LASVYHLTRI+ GI PEEVCIK+F ++NPRIPS+FWVW+SADFQERESYDM+GIS
Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWVWRSADFQERESYDMVGIS 122
Query: 122 YDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
YDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH
Sbjct: 123 YDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
>gi|11466790 ORF159 [Oryza sativa]
sp|P12200|NUGC_ORYSA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J (ORF 159)
pir||S05106 hypothetical protein 159 - rice chloroplast
emb|CAA33999.1| (X15901) ORF159 [Oryza sativa]
prf||1603356AE ORF 159 [Oryza sativa]
Length = 159
Score = 293 bits (743), Expect = 7e-79
Identities = 132/157 (84%), Positives = 146/157 (92%)
Query: 2 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSP 61
QG LS WLVKH +VHRSLGFD++GIETLQIK EDW SIAVILYVYGYNYLRSQCAYDV+P
Sbjct: 3 QGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAEDWDSIAVILYVYGYNYLRSQCAYDVAP 62
Query: 62 GGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGIS 121
GG LASVYHLTRI+ GI PEEVCIK+F ++NPRIPS+FW+W+S+DFQERES+DM+GIS
Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSSDFQERESFDMVGIS 122
Query: 122 YDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
YDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH
Sbjct: 123 YDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
>gi|11466705 ORF169 [Marchantia polymorpha]
sp|P12199|NUGC_MARPO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J (ORF 169)
pir||A05042 hypothetical protein 169 - liverwort (Marchantia polymorpha)
chloroplast
emb|CAA28087.1| (X04465) ORF169 [Marchantia polymorpha]
Length = 169
Score = 278 bits (703), Expect = 3e-74
Identities = 124/158 (78%), Positives = 138/158 (86%)
Query: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
+QGRLS WL+KH L HR LGFDYQGIETLQI+ EDW S+AV LYVYG+NYLRSQCAYDV
Sbjct: 12 IQGRLSIWLIKHNLKHRPLGFDYQGIETLQIRSEDWPSLAVALYVYGFNYLRSQCAYDVE 71
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
PGGLLASVYH T+I QPEE+CIKIF+ R NP+IPSIFWVWKSADFQERESYDM GI
Sbjct: 72 PGGLLASVYHFTKITDNADQPEEICIKIFILRKNPKIPSIFWVWKSADFQERESYDMFGI 131
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
Y+NHP LKRILMP+SW+GWPLRKDYI PNFYE+QDA+
Sbjct: 132 FYENHPCLKRILMPDSWLGWPLRKDYIVPNFYELQDAY 169
>gi|11466395 subunit J of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
gb|AAF43839.1|AF166114_51 (AF166114) subunit J of NADH-plastoquinoneoxidoreductase
[Mesostigma viride]
Length = 174
Score = 253 bits (640), Expect = 8e-67
Identities = 109/158 (68%), Positives = 135/158 (84%)
Query: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
++G +S WL++ L+HR LGFDYQG+ETL++K ++ S+A+ LY YG+NYLRSQCAYDVS
Sbjct: 17 LKGLVSNWLIEMKLMHRPLGFDYQGVETLEVKAQNLTSVAIALYAYGFNYLRSQCAYDVS 76
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
PGG LASVYHLT+++ QP+EVCIK+FVPR P IPS+FW+WK+ADFQERESYDM GI
Sbjct: 77 PGGDLASVYHLTKVDDNADQPQEVCIKVFVPRTKPIIPSVFWIWKTADFQERESYDMFGI 136
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
Y+ HP LKRILMPE WIGWPLRKDYITP+FYE+QDA+
Sbjct: 137 YYEGHPHLKRILMPEHWIGWPLRKDYITPDFYELQDAY 174
>emb|CAB45641.1| (AJ012180) NDH-J protein [Anabaena PCC7120]
Length = 175
Score = 199 bits (501), Expect = 2e-50
Identities = 84/156 (53%), Positives = 114/156 (72%)
Query: 3 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSPG 62
G S WL ++G H SL D G+E ++++ + IA LY YG+NYL+ Q D+ PG
Sbjct: 20 GPTSQWLTENGFAHESLAADKNGVEIIKVEADFLLPIATALYAYGFNYLQFQGGVDLGPG 79
Query: 63 GLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISY 122
L SVYHL ++ +PEE+ +K+F+PR NP +PS++W+WK+AD+QERESYDM GI Y
Sbjct: 80 QDLVSVYHLVKVSDNADKPEEIRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIY 139
Query: 123 DNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
+ HP LKRILMPE W+GWPLRKDYI+P+FYE+QDA+
Sbjct: 140 EGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY 175
>pir||S75826 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain J -
Synechocystis sp. (strain PCC 6803)
dbj|BAA18285.1| (D90913) NADH dehydrogenase subunit I [Synechocystis sp.]
Length = 179
Score = 197 bits (495), Expect = 8e-50
Identities = 84/156 (53%), Positives = 113/156 (71%)
Query: 3 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSPG 62
G +S WL +G H+SL D+ G+E +Q++ + + LY YG+NYL+ Q AYD PG
Sbjct: 24 GPVSTWLTTNGFEHQSLTADHLGVEMVQVEADLLLPLCTALYAYGFNYLQCQGAYDEGPG 83
Query: 63 GLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISY 122
L S YHL ++ PEEV +K+F+PR NP +PS++W+WK+AD+QERE YDM GI Y
Sbjct: 84 KSLVSFYHLVKLTEDTRNPEEVRLKVFLPRENPVVPSVYWIWKAADWQERECYDMFGIVY 143
Query: 123 DNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
+ HP LKRILMPE W+GWPLRKDYI+P+FYE+QDA+
Sbjct: 144 EGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY 179
>sp|P19125|NUGC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J (ORF 155)
pir||S04439 hypothetical protein 157 - Synechocystis sp. (PCC 6803)
emb|CAA35486.1| (X17439) ORF 157 (AA 1 - 157) [Synechocystis PCC6803]
Length = 157
Score = 197 bits (495), Expect = 8e-50
Identities = 84/156 (53%), Positives = 113/156 (71%)
Query: 3 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSPG 62
G +S WL +G H+SL D+ G+E +Q++ + + LY YG+NYL+ Q AYD PG
Sbjct: 2 GPVSTWLTTNGFEHQSLTADHLGVEMVQVEADLLLPLCTALYAYGFNYLQCQGAYDEGPG 61
Query: 63 GLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISY 122
L S YHL ++ PEEV +K+F+PR NP +PS++W+WK+AD+QERE YDM GI Y
Sbjct: 62 KSLVSFYHLVKLTEDTRNPEEVRLKVFLPRENPVVPSVYWIWKAADWQERECYDMFGIVY 121
Query: 123 DNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
+ HP LKRILMPE W+GWPLRKDYI+P+FYE+QDA+
Sbjct: 122 EGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY 157
>emb|CAB45648.1| (AJ012181) NDH-J protein [Anabaena variabilis]
Length = 175
Score = 192 bits (482), Expect = 3e-48
Identities = 82/156 (52%), Positives = 113/156 (71%)
Query: 3 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSPG 62
G S WL ++G H SL D G+E +++ P+ IA LY YG+NYL+ Q D+ PG
Sbjct: 20 GPTSQWLTENGFAHESLAADKNGVEIIKVDPDFLLPIATALYAYGFNYLQFQRRIDLRPG 79
Query: 63 GLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISY 122
L SVYHL ++ +PEE+ +K+F+PR NP +PS++W+ K+AD+QER SYDM+GI Y
Sbjct: 80 QDLVSVYHLVKVSDNADKPEEIRVKVFLPRENPVVPSVYWIGKTADWQERGSYDMVGIIY 139
Query: 123 DNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
+ HP LKRIL+PE W+GWPLRKDYI+P+FYE+QDA+
Sbjct: 140 EGHPNLKRILIPEDWVGWPLRKDYISPDFYELQDAY 175
>sp|P31174|NUGC_SOYBN NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J
pir||S28884 ndhJ protein - soybean chloroplast (fragment)
Length = 97
Score = 184 bits (463), Expect = 5e-46
Identities = 86/96 (89%), Positives = 90/96 (93%)
Query: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
MQGRLS+WLVKHGL HRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDV+
Sbjct: 1 MQGRLSSWLVKHGLSHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVA 60
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPR 96
PGGLLASVYHLTR+E I QPEEVC+KIFV R NPR
Sbjct: 61 PGGLLASVYHLTRLEYDIGQPEEVCMKIFVARGNPR 96
>emb|CAA45613.1| (X64329) orf158/159 [Glycine max]
Length = 98
Score = 184 bits (463), Expect = 5e-46
Identities = 86/96 (89%), Positives = 90/96 (93%)
Query: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
MQGRLS+WLVKHGL HRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDV+
Sbjct: 1 MQGRLSSWLVKHGLSHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVA 60
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPR 96
PGGLLASVYHLTR+E I QPEEVC+KIFV R NPR
Sbjct: 61 PGGLLASVYHLTRLEYDIGQPEEVCMKIFVARGNPR 96
>sp|Q44241|NUGC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT J
pir||S74217 NADH dehydrogenase (EC 1.6.99.3) chain J - Anabaena sp. (PCC 7120)
(fragment)
gb|AAC44354.1| (U31208) NADH dehydrogenase type 1 subunit [Anabaena sp.]
Length = 139
Score = 161 bits (403), Expect = 5e-39
Identities = 69/136 (50%), Positives = 94/136 (68%)
Query: 3 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSPG 62
G S WL ++G H SL D G+E ++++P+ IA LY YG+NYL+ Q D+ PG
Sbjct: 4 GPTSQWLTENGFAHESLAADKNGVEIIKVEPDFMLPIATALYAYGFNYLQFQGGIDLGPG 63
Query: 63 GLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISY 122
L SVYHL ++ +PEEV +K+F+PR NP +PS++W+WK+AD+QERESYDM GI Y
Sbjct: 64 QDLVSVYHLVKVSDNADKPEEVRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIY 123
Query: 123 DNHPRLKRILMPESWI 138
+ HP LKRILMP W+
Sbjct: 124 EGHPNLKRILMPGDWV 139
>pir||D71838 nadh oxidoreductase I - Helicobacter pylori (strain J99)
gb|AAD06769.1| (AE001545) NADH oxidoreductase I [Helicobacter pylori J99]
Length = 265
Score = 76.5 bits (185), Expect = 2e-13
Identities = 43/118 (36%), Positives = 64/118 (53%), Gaps = 4/118 (3%)
Query: 31 IKPEDWHSIAVILYVYGYNYLRSQCAYDV-SPGGLLASVYHLTRIECGIYQPEEVCIK-I 88
IK +D S+A IL GY L A D+ + G Y V +K +
Sbjct: 64 IKKDDIFSVATILKHLGYECLSEMSAIDLCAKKGHFELFYQFVGFSDSCKNRRRVRVKCV 123
Query: 89 FVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
+P N + S+ ++++SA++ ERE+YDMLGI +D HP LKR++MP W+G PL + Y
Sbjct: 124 LLP--NESVDSLSFLYRSANWSEREAYDMLGIVFDKHPYLKRLIMPHDWVGHPLLRSY 179
>pir||F64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO5 -
Helicobacter pylori (strain 26695)
gb|AAD08308.1| (AE000631) NADH-ubiquinone oxidoreductase, NQO5 subunit (NQO5)
[Helicobacter pylori 26695]
Length = 266
Score = 76.5 bits (185), Expect = 2e-13
Identities = 43/118 (36%), Positives = 64/118 (53%), Gaps = 4/118 (3%)
Query: 31 IKPEDWHSIAVILYVYGYNYLRSQCAYDV-SPGGLLASVYHLTRIECGIYQPEEVCIK-I 88
IK +D S+A IL GY L A D+ + G Y V +K +
Sbjct: 65 IKKDDIFSVATILRHLGYECLSEMSAIDLCAKKGHFELFYQFVGFSDSCKNRRRVRVKCV 124
Query: 89 FVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
+P N + S+ ++++SA++ ERE+YDMLGI +D HP LKR++MP W+G PL + Y
Sbjct: 125 LLP--NESVDSLSFLYRSANWSEREAYDMLGIVFDKHPYLKRLIMPHDWVGHPLLRSY 180
>pir||T34622 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoC -
Streptomyces coelicolor
emb|CAB44529.1| (AL078618) nuoC, NADH dehydrogenase subunit [Streptomyces
coelicolor]
Length = 251
Score = 75.7 bits (183), Expect = 3e-13
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 57 YDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYD 116
Y G L +VYHL I + +++ P +P IPS+ V+ + D+ ERE+YD
Sbjct: 142 YPHDKGRELHAVYHLRSIT----HNRLIRLEVSAPDGDPHIPSLVSVYPTNDWHERETYD 197
Query: 117 MLGISYDNHPRLKRILMPESWIGWPLRKDY 146
GI +D+HP L RI+MP+ W G+P RKDY
Sbjct: 198 FFGIVFDDHPALTRIMMPDDWQGFPQRKDY 227
>sp|Q56219|NQO5_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 (NADH DEHYDROGENASE 1, CHAIN
5) (NDH-1, CHAIN 5)
pir||T11900 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO5 - Thermus
aquaticus thermophilus
gb|AAA97940.1| (U52917) NADH dehydrogenase I, subunit NQO5 [Thermus thermophilus]
Length = 207
Score = 74.1 bits (179), Expect = 1e-12
Identities = 30/61 (49%), Positives = 45/61 (73%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
++++VP +PR+P++ +W SA+F ERE YD+ GI ++ HP L++IL PE G PLRKD
Sbjct: 90 VRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKD 149
Query: 146 Y 146
Y
Sbjct: 150 Y 150
>gb|AAG57415.1|AE005460_9 (AE005460) NADH dehydrogenase I chain C, D [Escherichia coli
O157:H7]
Length = 600
Score = 73.0 bits (176), Expect = 2e-12
Identities = 31/86 (36%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
P + YHL I+ + ++ +K+ + N+ +P+ ++ +A++ ERE++D+ GI
Sbjct: 92 PAADFSVFYHLISID----RNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGI 147
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDY 146
++D HP L+RI+MP++W G PLRKDY
Sbjct: 148 TFDGHPNLRRIMMPQTWKGHPLRKDY 173
>emb|CAC12097.1| (AL445066) NADH dehydrogenase, chain C related protein
[Thermoplasma acidophilum]
Length = 150
Score = 73.0 bits (176), Expect = 2e-12
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 6/79 (7%)
Query: 68 VYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPR 127
VYHL ++ + E + +K N+ +PS+ +W +A++ ERE YD++G+ +D HP
Sbjct: 52 VYHLYNMQ----KNEYIIVKTETRDNH--VPSLTSLWNAANWDEREEYDLVGVIFDGHPN 105
Query: 128 LKRILMPESWIGWPLRKDY 146
LKR+ +PE W+G PLRK+Y
Sbjct: 106 LKRLFLPEGWVGHPLRKNY 124
>sp|P33599|NUCD_ECOLI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 3/4) (NUO3/NUO4)
pir||D65000 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I, chain C-D -
Escherichia coli
gb|AAC75346.1| (AE000317) NADH dehydrogenase I chain C, D [Escherichia coli K12]
Length = 600
Score = 73.0 bits (176), Expect = 2e-12
Identities = 31/86 (36%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
P + YHL I+ + ++ +K+ + N+ +P+ ++ +A++ ERE++D+ GI
Sbjct: 92 PAADFSVFYHLISID----RNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGI 147
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDY 146
++D HP L+RI+MP++W G PLRKDY
Sbjct: 148 TFDGHPNLRRIMMPQTWKGHPLRKDY 173
>pir||S37060 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain C - Escherichia
coli
emb|CAA48362.1| (X68301) NADH dehydrogenase I, subunit nuoC [Escherichia coli]
Length = 183
Score = 73.0 bits (176), Expect = 2e-12
Identities = 31/86 (36%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
P + YHL I+ + ++ +K+ + N+ +P+ ++ +A++ ERE++D+ GI
Sbjct: 92 PAADFSVFYHLISID----RNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGI 147
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDY 146
++D HP L+RI+MP++W G PLRKDY
Sbjct: 148 TFDGHPNLRRIMMPQTWKGHPLRKDY 173
>gb|AAG19139.1| (AE005011) NADH dehydrogenase/oxidoreductase; NdhG5 [Halobacterium
sp. NRC-1]
Length = 562
Score = 72.6 bits (175), Expect = 3e-12
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 3/80 (3%)
Query: 67 SVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHP 126
S+YHL + + +EV I + R+NP + V+++AD+ ERE+YD++G+ YD+HP
Sbjct: 85 SIYHLRKYDD---PTQEVSIIVPTSRDNPVSETAEPVFRTADWHEREAYDLVGVEYDDHP 141
Query: 127 RLKRILMPESWIGWPLRKDY 146
L+RIL+P++W G PL DY
Sbjct: 142 NLERILLPDTWQGHPLGLDY 161
>gb|AAF65733.1|AF228525_3 (AF228525) F420H2 dehydrogenase subunit FpoC [Methanosarcina mazei]
Length = 158
Score = 72.6 bits (175), Expect = 3e-12
Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 48 YNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSA 107
+++L S D L +VYH+ + P + +K +PR++P I S+ V+ +A
Sbjct: 51 FDHLCSVSGVDYPQRDELEAVYHIASYD----HPVVLMLKARLPRDSPEIESVVSVYWNA 106
Query: 108 DFQERESYDMLGISYDNHPRLKRILMPESWIG-WPLRKDY 146
++ ERE+Y++ GI + NHP LK +++P+ +G WPLRKDY
Sbjct: 107 NWYERETYELYGIFFKNHPELKPLVLPDDMLGEWPLRKDY 146
>sp|P95179|NUOC_MYCTU NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
C)
pir||D70647 probable nadh-ubiquinone oxidoreductase - Mycobacterium
tuberculosis (strain H37RV)
emb|CAB06269.1| (Z83867) nuoC [Mycobacterium tuberculosis]
Length = 236
Score = 71.4 bits (172), Expect = 6e-12
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 57 YDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYD 116
Y G L +VY L I + +++ P ++P IPS+F ++ + D+ ERE+YD
Sbjct: 127 YPHETGRELHAVYPLQSIT----HNRRLRLEVSAPDSDPHIPSLFAIYPTNDWHERETYD 182
Query: 117 MLGISYDNHPRLKRILMPESWIGWPLRKDY 146
GI +D HP L RI MP+ W G P RKDY
Sbjct: 183 FFGIIFDGHPALTRIEMPDDWQGHPQRKDY 212
>gb|AAC38642.1| (AF057063) NADH dehydrogenase chain C [Pectobacterium carotovorum
subsp. carotovorum]
Length = 179
Score = 71.0 bits (171), Expect = 8e-12
Identities = 29/78 (37%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 69 YHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRL 128
YH+ IE + ++ +K+ + N+ +P++ ++ +A++ ERE+++M G+++D HP L
Sbjct: 99 YHIISIE----RNRDIMLKVALAENDLHLPTVTKLFPNANWYERETWEMFGMTFDGHPHL 154
Query: 129 KRILMPESWIGWPLRKDY 146
RI+MP++W G PLRKDY
Sbjct: 155 TRIMMPQTWEGHPLRKDY 172
>gb|AAF97799.1|AF281148_3 (AF281148) NADH dehydrogenase I subunit C [Pseudomonas fluorescens]
Length = 200
Score = 70.6 bits (170), Expect = 1e-11
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 69 YHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRL 128
YHL IE + +V IK+ + ++ +P++ +W +A++ ERE +DM GI + HP L
Sbjct: 95 YHLMSIE----RNSDVMIKVALSESDLSVPTVTGIWPNANWYEREVWDMFGIDFPGHPHL 150
Query: 129 KRILMPESWIGWPLRKD 145
RI+MP +W G PLRKD
Sbjct: 151 TRIMMPPTWEGHPLRKD 167
>pir||D83316 NADH dehydrogenase I chain C,D PA2639 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06027.1|AE004692_6 (AE004692) NADH dehydrogenase I chain C,D [Pseudomonas aeruginosa]
Length = 593
Score = 70.2 bits (169), Expect = 1e-11
Identities = 33/86 (38%), Positives = 51/86 (58%), Gaps = 4/86 (4%)
Query: 61 PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
P + YHL +E + +V IK+ + + +P+ +W +A++ ERE +DM GI
Sbjct: 86 PSADFSVFYHLMSLE----RNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGI 141
Query: 121 SYDNHPRLKRILMPESWIGWPLRKDY 146
++ HP L R+LMP +W G PLRKDY
Sbjct: 142 TFTGHPHLTRMLMPPTWQGHPLRKDY 167
>sp|P57254|NUCD_BUCAI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN C/D)
dbj|BAB12874.1| (AP001118) NADH dehydrogenase I chain C / D [Buchnera sp. APS]
Length = 600
Score = 68.3 bits (164), Expect = 5e-11
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 69 YHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRL 128
YHL IE + ++ IK+ + N+ +P+ ++ +A++ ERE++DM GI ++NHP L
Sbjct: 100 YHLISIE----RNSDIMIKVPLLENDLILPTFTGLFPNANWYERETWDMFGIIFNNHPNL 155
Query: 129 KRILMPESWIGWPLRKDY 146
RI+MP +W G PLRK+Y
Sbjct: 156 TRIIMPSTWKGHPLRKNY 173
>pir||G81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain C Cj1577c
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB73565.1| (AL139079) NADH dehydrogenase I chain C [Campylobacter jejuni]
Length = 264
Score = 67.5 bits (162), Expect = 9e-11
Identities = 46/119 (38%), Positives = 59/119 (48%), Gaps = 6/119 (5%)
Query: 29 LQIKPEDWHSIAVILYVYGYNYLRSQCAYD-VSPGGLLASVYHLTRIECGIYQPEEVCIK 87
++IK ED +L GY A D ++ Y L +E + V IK
Sbjct: 62 IEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIADKNGFEVFYQLLNLEKKL----RVRIK 117
Query: 88 IFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
FV R+ S+ V+K A++ ERE YDM GI NHP LKRILMP+ W G PL K Y
Sbjct: 118 TFVGVKE-RLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRILMPDDWFGHPLLKTY 175
>sp|O68854|NUC1_RHIME NADH DEHYDROGENASE I CHAIN C 1 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN C 1)
Length = 201
Score = 64.8 bits (155), Expect = 6e-10
Identities = 41/111 (36%), Positives = 59/111 (52%), Gaps = 13/111 (11%)
Query: 45 VYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVW 104
V G +Y + +DV VYHL Q + V +K+ N+P +PS V+
Sbjct: 60 VCGVDYPQRPDRFDV--------VYHLLSPR----QNQRVRVKVATGENDP-VPSATSVF 106
Query: 105 KSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
AD+ ERE+YDM GI + HP L+RIL + G+PLRKD+ F E++
Sbjct: 107 PGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVR 157
>sp|P56896|NUC2_RHIME NADH DEHYDROGENASE I CHAIN C 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN C 2)
emb|CAB51631.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 182
Score = 64.8 bits (155), Expect = 6e-10
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 22/108 (20%)
Query: 48 YNYLRSQCAYDVSPGG-LLASVYHL--------TRIECGIYQPEEVCIKIFVPRNNPRIP 98
+++L C D P +VYHL RI+C + +P P +P
Sbjct: 54 FDFLSDICGVDHYPETPRFETVYHLYSLKNKWRVRIKCRLGEP-------------PHVP 100
Query: 99 SIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
++ VW++A++ ERE++DM GI ++ HP L+RI M E + G+P RKD+
Sbjct: 101 TVTGVWRTANWHEREAWDMYGIRFEGHPDLRRIYMWEGFEGFPQRKDF 148
>gb|AAC12756.1| (AF055637) NADH-ubiquinone oxidoreductase subunit NuoC
[Sinorhizobium meliloti]
Length = 201
Score = 64.8 bits (155), Expect = 6e-10
Identities = 41/111 (36%), Positives = 59/111 (52%), Gaps = 13/111 (11%)
Query: 45 VYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVW 104
V G +Y + +DV VYHL Q + V +K+ N+P +PS V+
Sbjct: 60 VCGVDYPQRPDRFDV--------VYHLLSPR----QNQRVRVKVATRENDP-VPSATSVF 106
Query: 105 KSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
AD+ ERE+YDM GI + HP L+RIL + G+PLRKD+ F E++
Sbjct: 107 PGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVR 157
>emb|CAB51622.1| (AJ245398) nuoC1 [Sinorhizobium meliloti]
Length = 201
Score = 64.4 bits (154), Expect = 8e-10
Identities = 41/111 (36%), Positives = 58/111 (51%), Gaps = 13/111 (11%)
Query: 45 VYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVW 104
V G +Y + +DV VYHL Q + V +K+ N P +PS V+
Sbjct: 60 VCGVDYPQRPDRFDV--------VYHLLSPR----QNQRVRVKVATGENEP-VPSATSVF 106
Query: 105 KSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
AD+ ERE+YDM GI + HP L+RIL + G+PLRKD+ F E++
Sbjct: 107 PGADWFEREAYDMYGILFTGHPDLRRILTDYGFEGYPLRKDFPLTGFVEVR 157
>pir||B75388 NADH dehydrogenase I, C subunit - Deinococcus radiodurans (strain
R1)
gb|AAF11071.1|AE001994_7 (AE001994) NADH dehydrogenase I, C subunit [Deinococcus
radiodurans]
Length = 224
Score = 61.7 bits (147), Expect = 5e-09
Identities = 30/79 (37%), Positives = 46/79 (57%), Gaps = 12/79 (15%)
Query: 80 QPEEVCIKIFVPRNNPR------------IPSIFWVWKSADFQERESYDMLGISYDNHPR 127
QP V + PR++ R + S+F +WK+A++ ERE YD+LGI + HP
Sbjct: 87 QPFAVLYSVAHPRDHRRLFLRVWLSEGEAVDSLFPIWKAANYLEREVYDLLGIEFTGHPD 146
Query: 128 LKRILMPESWIGWPLRKDY 146
L+++L P+ G PLRKD+
Sbjct: 147 LRKVLTPDDLEGHPLRKDF 165
>gb|AAA03037.1| (M93015) NADH dehydrogenase [Paracoccus denitrificans]
Length = 208
Score = 60.9 bits (145), Expect = 9e-09
Identities = 32/88 (36%), Positives = 52/88 (58%), Gaps = 5/88 (5%)
Query: 68 VYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPR 127
VYHL +YQ + + +K+ V R + +PS+ V+ A++ ERE +D+ GI + H
Sbjct: 80 VYHLL----SMYQNQRIRVKVQV-REDELVPSLIGVFPGANWYEREVFDLFGILFSGHSD 134
Query: 128 LKRILMPESWIGWPLRKDYITPNFYEIQ 155
L+RIL + G PLRKD+ T + E++
Sbjct: 135 LRRILTDYGFRGHPLRKDFPTTGYVEVR 162
>sp|P29917|NQO5_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 (NADH DEHYDROGENASE 1, CHAIN
5) (NDH-1, CHAIN 5)
pir||D42573 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) 21K chain - Paracoccus
denitrificans
Length = 207
Score = 60.9 bits (145), Expect = 9e-09
Identities = 32/88 (36%), Positives = 52/88 (58%), Gaps = 5/88 (5%)
Query: 68 VYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPR 127
VYHL +YQ + + +K+ V R + +PS+ V+ A++ ERE +D+ GI + H
Sbjct: 79 VYHLL----SMYQNQRIRVKVQV-REDELVPSLIGVFPGANWYEREVFDLFGILFSGHSD 133
Query: 128 LKRILMPESWIGWPLRKDYITPNFYEIQ 155
L+RIL + G PLRKD+ T + E++
Sbjct: 134 LRRILTDYGFRGHPLRKDFPTTGYVEVR 161
>emb|CAC08254.1| (AL392146) putative dehydrogenase (fragment) [Streptomyces
coelicolor]
Length = 454
Score = 60.1 bits (143), Expect = 2e-08
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
++ VP + P +PS V+ A + ERE+++M G+++ +HP L +L+PE + G PLRKD
Sbjct: 84 LRTTVPHDAPALPSAVGVYAGAAWHERETHEMFGVAFADHPALDHLLLPEGFEGHPLRKD 143
Query: 146 YI 147
++
Sbjct: 144 FV 145
>sp|Q9JX80|NUOC_NEIMA NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
C)
pir||E81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain C NMA0017
[imported] - Neisseria meningitidis (group A strain
Z2491)
emb|CAB83337.1| (AL162752) NADH dehydrogenase I chain C [Neisseria meningitidis
Z2491]
Length = 197
Score = 60.1 bits (143), Expect = 2e-08
Identities = 26/75 (34%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 82 EEVCIKIFVPRNN-PRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGW 140
+ + ++++V ++ P + S+ ++ SAD+ ERE++DM GI ++NHP L+RIL ++G
Sbjct: 90 QRIRVRVWVSDDDFPVVESVVDIYNSADWYEREAFDMYGIMFNNHPDLRRILTDYGFVGH 149
Query: 141 PLRKDYITPNFYEIQ 155
P RKD+ + E++
Sbjct: 150 PFRKDFPISGYVEMR 164
>sp|Q9K1C1|NUOC_NEIMB NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
C)
pir||A81222 NADH dehydrogenase I, C chain NMB0243 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40697.1| (AE002381) NADH dehydrogenase I, C subunit [Neisseria meningitidis
MC58]
Length = 197
Score = 60.1 bits (143), Expect = 2e-08
Identities = 26/75 (34%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 82 EEVCIKIFVPRNN-PRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGW 140
+ + ++++V ++ P + S+ ++ SAD+ ERE++DM GI ++NHP L+RIL ++G
Sbjct: 90 QRIRVRVWVSDDDFPVVESVVDIYNSADWYEREAFDMYGIMFNNHPDLRRILTDYGFVGH 149
Query: 141 PLRKDYITPNFYEIQ 155
P RKD+ + E++
Sbjct: 150 PFRKDFPISGYVEMR 164
>pir||A72621 probable NADH-plastoquinone oxidoreductase subunit J APE1426 -
Aeropyrum pernix (strain K1)
dbj|BAA80423.1| (AP000061) 189aa long hypothetical NADH-plastoquinone
oxidoreductase subunit J [Aeropyrum pernix]
Length = 189
Score = 60.1 bits (143), Expect = 2e-08
Identities = 39/128 (30%), Positives = 62/128 (47%), Gaps = 2/128 (1%)
Query: 22 DYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQP 81
D +G + +D A L G++++ S D VYH++ +
Sbjct: 45 DGKGFVDFIVSVDDLVRAAEALKTVGFDHVVSITTIDYLKEKKFRVVYHVSSYLDAALKG 104
Query: 82 EEVCIKIFVPR-NNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILM-PESWIG 139
V + + +PR P IPS+ +W SA+FQERE Y+ GI ++ HP L+ L+ P
Sbjct: 105 AIVGLGVELPRVEKPSIPSLSQIWISAEFQEREVYEFFGIEFEGHPDLRPFLLTPPVAEK 164
Query: 140 WPLRKDYI 147
PLRKD++
Sbjct: 165 RPLRKDFV 172
>gi|11466593 NADH dehydrogenase subunit 9 [Rhodomonas salina]
gb|AAG17754.1|AF288090_30 (AF288090) NADH dehydrogenase subunit 9 [Rhodomonas salina]
Length = 188
Score = 59.7 bits (142), Expect = 2e-08
Identities = 29/67 (43%), Positives = 43/67 (63%)
Query: 89 FVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIT 148
F N + SI +++K+ ++ ERE +DM GI +DNHP L+RIL + G+PLRKD+
Sbjct: 92 FSLNENSSVDSITYLYKNGNWVEREVWDMNGIFFDNHPDLRRILTDYGFEGFPLRKDFPI 151
Query: 149 PNFYEIQ 155
F EI+
Sbjct: 152 SGFKEIR 158
>gi|11465870 NADH dehydrogenase subunit 9 [Ochromonas danica]
gb|AAG18385.1|AF287134_10 (AF287134) NADH dehydrogenase subunit 9 [Ochromonas danica]
Length = 181
Score = 59.3 bits (141), Expect = 3e-08
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 84 VCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLR 143
V +KIFV P I S ++K+A++ ERE +DM GI + NHP L+RIL + G+PLR
Sbjct: 83 VRVKIFVNEITP-IESCVEIYKNANWWEREIWDMYGIYFYNHPDLRRILTDYGFEGYPLR 141
Query: 144 KDYITPNFYEIQ 155
KD+ F E++
Sbjct: 142 KDFPLSGFVELR 153
>gb|AAF03192.1|AF110138_24 (AF110138) NADH dehydrogenase subunit 9 [Nephroselmis olivacea]
Length = 189
Score = 58.2 bits (138), Expect = 6e-08
Identities = 41/133 (30%), Positives = 63/133 (46%), Gaps = 13/133 (9%)
Query: 29 LQIKPEDWHSIAVILYVYG-----YNYLRSQCAYDVSPGGL-LASVYHLTRIECGIYQPE 82
L + PE H + ++ ++ + L C D L VY L ++
Sbjct: 29 LSVSPE--HLVPLLFFLRNHTNTQFELLVDACGVDYPSRPLRFEMVYQLLSVQYNSRLRI 86
Query: 83 EVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPL 142
+V + F P IPS V+ SA + ERE++DM GI + NHP L+RIL + G PL
Sbjct: 87 KVAVDEFTP-----IPSATEVYPSAGWLEREAWDMYGIFFSNHPDLRRILTDYGFEGHPL 141
Query: 143 RKDYITPNFYEIQ 155
RKD+ + E++
Sbjct: 142 RKDFPLTGYTEVR 154
>gi|11467084 NADH dehydrogenase, subunit 9 [Acanthamoeba castellanii]
sp|Q37383|NUGM_ACACA NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT 9
pir||S53861 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 9 - Acanthamoeba
castellanii mitochondrion
gb|AAD11853.1| (U12386) NADH dehydrogenase, subunit 9 [Acanthamoeba castellanii]
Length = 195
Score = 57.0 bits (135), Expect = 1e-07
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 97 IPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
+PSI ++ SA++ ERE +DM G+ + NHP L+RIL + G+PLRKD+ + EI+
Sbjct: 105 VPSISTLFNSANWIERECWDMFGVFFTNHPDLRRILTDYGFEGFPLRKDFPLTGYIEIR 163
>gb|AAA32025.2| (L16863) NADH dehydrogenase [Phytophthora megasperma]
Length = 188
Score = 56.6 bits (134), Expect = 2e-07
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
+KI + P + SI ++K+A++ ERE +DM GI + NHP L+RIL + G PLRKD
Sbjct: 86 VKITINEVQP-VDSIINIYKAANWCEREVWDMFGIFFSNHPDLRRILTDYGFEGHPLRKD 144
Query: 146 YITPNFYEI 154
+ F E+
Sbjct: 145 FPLSGFLEV 153
>gi|11466534 NADH dehydrogenase, subunit 9 [Reclinomonas americana]
sp|O21271|NUGM_RECAM NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT 9
pir||S78165 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 9 - Reclinomonas
americana (ATCC 50394) mitochondrion
gb|AAD11898.1| (AF007261) NADH dehydrogenase, subunit 9 [Reclinomonas americana]
Length = 204
Score = 56.6 bits (134), Expect = 2e-07
Identities = 39/136 (28%), Positives = 68/136 (49%), Gaps = 9/136 (6%)
Query: 24 QGIETLQIKPEDWHSIAVILYVYG---YNYLRSQCAYDV-SPGGLLASVYHLTRIECGIY 79
+G TL +KP + ++ IL + + L CA D VY+L +
Sbjct: 32 KGELTLHVKPTNLIALMKILKNHTNCQFKSLSDLCAVDFPEKKERFEIVYNLLSVRYN-- 89
Query: 80 QPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIG 139
+ +K FV P +PS+ ++++A + ERE +D+ G+ + NHP L+RIL + G
Sbjct: 90 --SRIRVKTFVDELTP-VPSVTCLFQAAGWFEREVWDLFGVYFTNHPDLRRILTDYGFEG 146
Query: 140 WPLRKDYITPNFYEIQ 155
P+RKD+ + E++
Sbjct: 147 HPMRKDFPLTGYVEVR 162
>gi|11466473 NADH dehydrogenase subunit 9 [Chrysodidymus synuroideus]
gb|AAF36942.1|AF222718_16 (AF222718) NADH dehydrogenase subunit 9 [Chrysodidymus synuroideus]
Length = 177
Score = 55.8 bits (132), Expect = 3e-07
Identities = 26/70 (37%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
IK+F+ N IPS+ ++ ++++ ERE +D+ GI ++NHP L+RIL + G+P+RKD
Sbjct: 80 IKLFITEVNT-IPSVTDIYVNSNWWEREVWDLFGIYFENHPDLRRILTDYGFEGYPMRKD 138
Query: 146 YITPNFYEIQ 155
+ + E++
Sbjct: 139 FPLYGYTELR 148
>pir||D70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoD2
[similarity] - Aquifex aeolicus
gb|AAC07298.1| (AE000734) NADH dehydrogenase I chain D [Aquifex aeolicus]
Length = 586
Score = 55.8 bits (132), Expect = 3e-07
Identities = 27/81 (33%), Positives = 48/81 (58%), Gaps = 5/81 (6%)
Query: 78 IYQPEE---VCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMP 134
+Y PEE V +K + + ++P++ +W A + ERE+YDM G+ ++ H L+R+ M
Sbjct: 75 LYNPEENERVIVKSWA--KDGKLPTVEDLWPGAKWAEREAYDMFGVVFEGHENLRRMFMW 132
Query: 135 ESWIGWPLRKDYITPNFYEIQ 155
E + +PLRKD+ E++
Sbjct: 133 EGYEHYPLRKDFPLQGIPEVE 153
>emb|CAB65522.1| (AJ249784) NUGM protein [Yarrowia lipolytica]
Length = 281
Score = 55.0 bits (130), Expect = 5e-07
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 67 SVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHP 126
SV H +RI Y E +PSI +++ A++ ERE+YDM G+ ++ HP
Sbjct: 146 SVRHNSRIRLKTYATEVT-----------PVPSITCLYEGANWFEREAYDMYGVFFEGHP 194
Query: 127 RLKRILMPESWIGWPLRKDYITPNFYEIQ 155
L+RI+ + G PLRKD+ + E++
Sbjct: 195 DLRRIMTDYGFEGHPLRKDFPLTGYTEVR 223
>gi|7524986 NADH dehydrogenase subunit 9 [Dictyostelium discoideum]
sp|P22237|NUGM_DICDI NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT 9
pir||S12247 NADH dehydrogenase chain 9 [imported] - slime mold (Dictyostelium
discoideum) mitochondrion
emb|CAA36903.1| (X52680) ORF209 [Dictyostelium discoideum]
dbj|BAA78066.1| (AB000109) NADH dehydrogenase subunit 9 [Dictyostelium discoideum]
Length = 209
Score = 55.0 bits (130), Expect = 5e-07
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 64 LLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYD 123
+L S+Y+ TR+ Y NN I + +++S+ + ERE +DM GI ++
Sbjct: 87 VLNSIYNNTRVHLSTYV-----------ENNGIIETTSGLFESSVWLEREIWDMFGIYFE 135
Query: 124 NHPRLKRILMPESWIGWPLRKDYITPNFYEI 154
HP L+RIL ++G+PL+KD+ + E+
Sbjct: 136 KHPDLRRILTDYGFVGYPLKKDFPITGYLEV 166
>gb|AAF86494.1|AF279447_1 (AF279447) NADH dehydrogenase subunit 9 [Lupinus luteus]
gb|AAF86495.1|AF279448_1 (AF279448) NADH dehydrogenase subunit 9 [Lupinus angustifolius]
Length = 190
Score = 54.7 bits (129), Expect = 7e-07
Identities = 26/60 (43%), Positives = 39/60 (64%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI S+ ++ SA + ERE +DM G+S+ NHP L+RIL + G PLRKD+ + E++
Sbjct: 97 RISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 156
>pir||S39072 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nad9 - wheat
mitochondrion
Length = 287
Score = 54.7 bits (129), Expect = 7e-07
Identities = 26/60 (43%), Positives = 39/60 (64%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI S+ ++ SA + ERE +DM G+S+ NHP L+RIL + G PLRKD+ + E++
Sbjct: 194 RISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 253
>gi|9695380 NADH dehydrogenase subunit 9 [Phytophthora infestans]
gb|AAF24776.1|U17009_8 (U17009) NADH dehydrogenase subunit 9 [Phytophthora infestans]
Length = 188
Score = 54.7 bits (129), Expect = 7e-07
Identities = 30/69 (43%), Positives = 43/69 (61%), Gaps = 1/69 (1%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
IKI + P I SI ++++A++ ERE +DM GI + NHP L+RIL + G PLRKD
Sbjct: 86 IKITINELQP-INSIIKIYRAANWCEREVWDMFGIFFLNHPDLRRILTDYGFEGHPLRKD 144
Query: 146 YITPNFYEI 154
+ F E+
Sbjct: 145 FPLSGFLEV 153
>sp|O84971|NUOC_RHOCA NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
C)
gb|AAC24987.1| (AF029365) NUOC [Rhodobacter capsulatus]
Length = 199
Score = 54.7 bits (129), Expect = 7e-07
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 98 PSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
PSI V+ +A++ ERE +DM GI + HP L+R+L + G PLRKD+ T + E++
Sbjct: 100 PSIVEVYPAANWYEREVFDMFGILFSGHPDLRRLLTDYGFRGHPLRKDFPTTGYIELR 157
>sp|Q34011|NUGM_BETWE NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNIT (COMPLEX I-27KD)
(CI-27KD) (NADH DEHYDROGENASE SUBUNIT 9)
Length = 192
Score = 54.7 bits (129), Expect = 7e-07
Identities = 26/60 (43%), Positives = 39/60 (64%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI S+ ++ SA + ERE +DM G+S+ NHP L+RIL + G PLRKD+ + E++
Sbjct: 97 RISSVVRLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 156
>sp|Q33994|NUGM_BETTR NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNIT (COMPLEX I-27KD)
(CI-27KD) (NADH DEHYDROGENASE SUBUNIT 9)
Length = 192
Score = 54.7 bits (129), Expect = 7e-07
Identities = 26/60 (43%), Positives = 39/60 (64%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI S+ ++ SA + ERE +DM G+S+ NHP L+RIL + G PLRKD+ + E++
Sbjct: 97 RISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 156
>sp|Q37787|NUGM_BETVU NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNIT (COMPLEX I-27KD)
(CI-27KD) (NADH DEHYDROGENASE SUBUNIT 9)
pir||S62130 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nad9 - sugar
beet mitochondrion
Length = 192
Score = 54.7 bits (129), Expect = 7e-07
Identities = 26/60 (43%), Positives = 39/60 (64%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI S+ ++ SA + ERE +DM G+S+ NHP L+RIL + G PLRKD+ + E++
Sbjct: 97 RISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 156
>pir||T25880 hypothetical protein T10E9.7 - Caenorhabditis elegans
gb|AAB52474.1| (U97403) Similar to NADH-ubiquinone oxidoreductase 30 kd subunit;
coded for by C. elegans cDNA yk83d8.3; coded for by C.
elegans cDNA yk8 [Caenorhabditis elegans]
Length = 401
Score = 54.7 bits (129), Expect = 7e-07
Identities = 25/53 (47%), Positives = 35/53 (65%)
Query: 103 VWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
V+K AD+ ERE YDM G+ ++NHP L+RIL + G P RKDY + E++
Sbjct: 289 VFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVR 341
>sp|Q00673|NUGM_CANMA PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 30.4 KD SUBUNIT PRECURSOR
(COMPLEX I-30KD) (CI-31KD) (ALKANE-INDUCIBLE PROTEIN 1)
pir||JT0591 ALI1 protein - yeast (Candida maltosa)
gb|AAA34360.1| (M61102) alkane-inducible protein [Candida maltosa]
prf||2005210B alkaline-inducible peroxisomal protein [Candida maltosa]
Length = 276
Score = 54.7 bits (129), Expect = 7e-07
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
+K + +P +PS+ ++ A++ ERE+YD+ G+ + HP L+RI+ + G PLRKD
Sbjct: 150 VKTYANETSP-VPSVTPLFNGANWYERETYDLFGVFFVGHPDLRRIMTDYGFEGHPLRKD 208
Query: 146 YITPNFYEIQ 155
+ T + E++
Sbjct: 209 FPTTGYTEVR 218
>gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus]
pir||D69478 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3), 39.7 kDa subunit
homolog - Archaeoglobus fulgidus
gb|AAB89421.1| (AE000976) F420H2:quinone oxidoreductase, 39.7 kDa subunit,
putative [Archaeoglobus fulgidus]
Length = 353
Score = 54.3 bits (128), Expect = 9e-07
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 40 AVILYVYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPS 99
A+ L G++++++ DV YH + P V + +PR NPR+ S
Sbjct: 237 AMRLREMGFDHVKNVNVIDVPNEDKFIVEYHFSSYSVKELMPVIVNVFADIPRENPRVKS 296
Query: 100 IFWVWKSADFQERESYDMLGISYDNHPRL-KRILMPESWIGWPLRKDY 146
+ ++ SAD+ ERE +D G+ ++ +P + ++ L+ +PLRKD+
Sbjct: 297 LASMFPSADYMEREMHDFFGVIFEGNPWMGRKFLLAPDAPEFPLRKDF 344
>pir||F70349 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoD1
[similarity] - Aquifex aeolicus
gb|AAC06787.1| (AE000695) NADH dehydrogenase I chain D [Aquifex aeolicus]
Length = 593
Score = 53.5 bits (126), Expect = 2e-06
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 78 IYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESW 137
+Y +E I R N ++P+I +W + + ERE YDM GI Y+ H L R M +++
Sbjct: 96 LYNVDERKRVIVKTRTNGKLPTIEKLWFAGKWAERECYDMFGIEYEGHENLVRAFMWDTY 155
Query: 138 IGWPLRKDY 146
+PLRKD+
Sbjct: 156 PYFPLRKDF 164
>sp|P23710|NUGM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 30.4 KD SUBUNIT PRECURSOR (COMPLEX
I-30KD) (CI-31KD)
pir||A35935 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) 31K chain precursor -
Neurospora crassa
Length = 283
Score = 53.1 bits (125), Expect = 2e-06
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 65 LASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDN 124
L SV H +RI +K + +P +PSI ++ A++ ERE YD+ G+ +
Sbjct: 146 LLSVRHNSRIR----------VKTYADEVSP-VPSITPLYDGANWYEREVYDLFGVFFTG 194
Query: 125 HPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
HP L+RI+ + G PLRKD+ + EI+
Sbjct: 195 HPDLRRIMTDYGFDGHPLRKDFPMTGYTEIR 225
>gb|AAG23682.1|AF288091_27 (AF288091) NADH dehydrogenase subunit 9 [Thraustochytrium aureum]
Length = 194
Score = 52.7 bits (124), Expect = 3e-06
Identities = 23/59 (38%), Positives = 39/59 (65%)
Query: 97 IPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
+PS+ ++ +A++ ERE++D+ GI + HP L+RIL + G PLRKD+ F E++
Sbjct: 95 VPSMVTLFSNANWYEREAFDIFGIFFSGHPDLRRILTDYGFEGHPLRKDFPLNGFNEVR 153
>gb|AAF86496.1|AF279449_1 (AF279449) NADH dehydrogenase subunit 9 [Lupinus angustifolius]
Length = 190
Score = 52.7 bits (124), Expect = 3e-06
Identities = 25/60 (41%), Positives = 38/60 (62%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA + ERE +DM G+S+ NHP L+RIL + G PLRKD+ + E++
Sbjct: 97 RISPVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 156
>sp|P34944|NUGM_MARPO NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNIT (COMPLEX I-27KD)
(CI-27KD) (NADH DEHYDROGENASE SUBUNIT 9)
Length = 195
Score = 52.7 bits (124), Expect = 3e-06
Identities = 24/59 (40%), Positives = 38/59 (63%)
Query: 97 IPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
I S+ ++ SA + ERE++DM G+ + NHP L+RIL + G PLRKD+ + E++
Sbjct: 97 ICSVVSIFPSAGWWERETWDMFGVYFSNHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 155
>gi|11467145 ORF212 [Marchantia polymorpha]
pir||S25996 hypothetical protein 212 - liverwort (Marchantia polymorpha)
mitochondrion
gb|AAC09443.1| (M68929) ORF212 [Marchantia polymorpha]
Length = 212
Score = 52.7 bits (124), Expect = 3e-06
Identities = 24/59 (40%), Positives = 38/59 (63%)
Query: 97 IPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
I S+ ++ SA + ERE++DM G+ + NHP L+RIL + G PLRKD+ + E++
Sbjct: 114 ICSVVSIFPSAGWWERETWDMFGVYFSNHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 172
>pir||E82821 NADH-ubiquinone oxidoreductase, NQO5 subunit XF0307 [imported] -
Xylella fastidiosa (strain 9a5c)
gb|AAF83118.1|AE003884_3 (AE003884) NADH-ubiquinone oxidoreductase, NQO5 subunit [Xylella
fastidiosa]
Length = 250
Score = 51.9 bits (122), Expect = 5e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 95 PRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
P + S+ VW ++ ERE++D+ GI ++ HP L+RIL +IG P RKD+
Sbjct: 144 PIVASLTDVWPGVNWFEREAFDLFGIVFEGHPDLRRILTDYGFIGHPFRKDF 195
>pir||T43501 hypothetical protein DKFZp586K0821.1 - human (fragment)
emb|CAB63881.1| (AL135819) hypothetical protein [Homo sapiens]
Length = 190
Score = 51.2 bits (120), Expect = 8e-06
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
+K + P I S V+K+A++ ERE +DM G+ + NHP L+RIL + G P RKD
Sbjct: 69 VKTYTDELTP-IESAVSVFKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKD 127
Query: 146 YITPNFYEIQ 155
+ + E++
Sbjct: 128 FPLSGYVELR 137
>gb|AAD40386.1| (AF100743) NADH-Ubiquinone reductase [Homo sapiens]
Length = 263
Score = 51.2 bits (120), Expect = 8e-06
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
+K + P I S V+K+A++ ERE +DM G+ + NHP L+RIL + G P RKD
Sbjct: 142 VKTYTDELTP-IESAVSVFKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKD 200
Query: 146 YITPNFYEIQ 155
+ + E++
Sbjct: 201 FPLSGYVELR 210
>gi|4758788 NADH dehydrogenase (ubiquinone) Fe-S protein 3 (30kD)
(NADH-coenzyme Q reductase) [Homo sapiens]
ref|XP_006148.1| NADH dehydrogenase (ubiquinone) Fe-S protein 3 (30kD)
(NADH-coenzyme Q reductase) [Homo sapiens]
sp|O75489|NUGM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 30 KDA SUBUNIT PRECURSOR (COMPLEX
I-30KD) (CI-30KD)
pir||JE0195 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NDUFS3 - human
gb|AAC27451.1| (AF067139) NADH:ubiquinone oxidoreductase NDUFS3 subunit [Homo
sapiens]
gb|AAG17541.1|AF200954_1 (AF200954) NADH dehydrogenase-ubiquinone 30 kDa subunit [Homo
sapiens]
gb|AAH00617.1|AAH00617 (BC000617) NADH dehydrogenase (ubiquinone) Fe-S protein 3 (30kD)
(NADH-coenzyme Q reductase) [Homo sapiens]
Length = 264
Score = 51.2 bits (120), Expect = 8e-06
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
+K + P I S V+K+A++ ERE +DM G+ + NHP L+RIL + G P RKD
Sbjct: 143 VKTYTDELTP-IESAVSVFKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKD 201
Query: 146 YITPNFYEIQ 155
+ + E++
Sbjct: 202 FPLSGYVELR 211
>gi|11497471 NADH dehydrogenase (ubiquinone), subunit 9 [Prototheca wickerhamii]
sp|Q37622|NUGM_PROWI NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT 9
pir||T11930 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 9 - Prototheca
wickerhamii mitochondrion
gb|AAD12649.1| (U02970) NADH dehydrogenase (ubiquinone), subunit 9 [Prototheca
wickerhamii]
Length = 192
Score = 51.2 bits (120), Expect = 8e-06
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 97 IPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
+ S+ V+ SA + ERE +DM G+ + NHP L+RIL + G PLRKD+ + E++
Sbjct: 96 LESVTPVYSSAAWWEREVWDMFGVFFHNHPDLRRILTDYGFQGHPLRKDFPLSGYVEVR 154
>gb|AAA30663.1| (M58469) NADH dehydrogenase (ubiquinone) [Bos taurus]
Length = 266
Score = 51.2 bits (120), Expect = 8e-06
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 65 LASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDN 124
L S+ +RI Y E I+ VP V+K+A++ ERE +DM G+ + N
Sbjct: 134 LLSLRFNSRIRVKTYTDELTPIESSVP-----------VYKAANWYEREIWDMFGVFFAN 182
Query: 125 HPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
HP L+RIL + G P RKD+ + E++
Sbjct: 183 HPDLRRILTDYGFEGHPFRKDFPLSGYVELR 213
>sp|P23709|NUGM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 30 KD SUBUNIT PRECURSOR (COMPLEX
I-30KD) (CI-30KD)
pir||A37957 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) 30K chain precursor -
bovine
Length = 266
Score = 51.2 bits (120), Expect = 8e-06
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 65 LASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDN 124
L S+ +RI Y E I+ VP V+K+A++ ERE +DM G+ + N
Sbjct: 134 LLSLRFNSRIRVKTYTDELTPIESSVP-----------VYKAANWYEREIWDMFGVFFAN 182
Query: 125 HPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
HP L+RIL + G P RKD+ + E++
Sbjct: 183 HPDLRRILTDYGFEGHPFRKDFPLSGYVELR 213
>dbj|BAA07215.1| (D38018) NADH dehydrogenase subunit 9 [Beta webbiana]
Length = 192
Score = 49.2 bits (115), Expect = 3e-05
Identities = 25/60 (41%), Positives = 36/60 (59%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S NHP L+RIL + G PLRKD+ + E++
Sbjct: 97 RISPVVRLFPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 156
>dbj|BAA07214.1| (D38017) NADH dehydrogenase subunit 9 [Beta trigyna]
Length = 192
Score = 49.2 bits (115), Expect = 3e-05
Identities = 25/60 (41%), Positives = 36/60 (59%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S NHP L+RIL + G PLRKD+ + E++
Sbjct: 97 RISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 156
>gi|9838362 NADH dehydrogenase subunit 9 [Beta vulgaris]
dbj|BAA07213.1| (D38016) NADH dehydrogenase subunit 9 [Beta vulgaris]
prf||2009372A NADH dehydrogenase:SUBUNIT=9 [Beta vulgaris]
Length = 192
Score = 49.2 bits (115), Expect = 3e-05
Identities = 25/60 (41%), Positives = 36/60 (59%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S NHP L+RIL + G PLRKD+ + E++
Sbjct: 97 RISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVR 156
>dbj|BAB22149.1| (AK002501) putative [Mus musculus]
Length = 263
Score = 48.4 bits (113), Expect = 5e-05
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKD 145
+K + P I SI V +A++ ERE +DM G+ + NHP L+RIL + G P RKD
Sbjct: 142 VKTYADELTP-IDSIVSVHIAANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKD 200
Query: 146 YITPNFYEIQ 155
+ + E++
Sbjct: 201 FPLTGYVELR 210
>gi|11466220 NADH dehydrogenase subunit 9 [Naegleria gruberi]
gb|AAG17821.1|AF288092_46 (AF288092) NADH dehydrogenase subunit 9 [Naegleria gruberi]
Length = 186
Score = 48.4 bits (113), Expect = 5e-05
Identities = 26/87 (29%), Positives = 46/87 (51%), Gaps = 5/87 (5%)
Query: 68 VYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPR 127
+YH+ IY V +K F+ S+ +++ + + ERE +D G+ + N+
Sbjct: 73 IYHII----SIYYHFRVFLKFFIEELESMY-SLCYIYPNISWYEREVWDFFGVFFLNNVN 127
Query: 128 LKRILMPESWIGWPLRKDYITPNFYEI 154
L+RIL+ ++G PLRKD+ F E+
Sbjct: 128 LRRILLDYGFVGHPLRKDFPLTGFVEL 154
>gi|11466318 NADH dehydrogenase subunit 9 [Cafeteria roenbergensis]
gb|AAF05797.1|AF193903_20 (AF193903) NADH dehydrogenase subunit 9 [Cafeteria roenbergensis]
Length = 210
Score = 48.0 bits (112), Expect = 7e-05
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 97 IPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEI 154
+ S+ ++ +A++ ERE++DM G+ + +HP L+RIL + G PLRKD+ + E+
Sbjct: 119 LSSLCSIFPNANWAEREAWDMFGVGFLSHPDLRRILTDYGFKGHPLRKDFPLLGYLEV 176
>gb|AAF47723.1| (AE003477) CG12079 gene product [Drosophila melanogaster]
Length = 265
Score = 46.5 bits (108), Expect = 2e-04
Identities = 21/53 (39%), Positives = 34/53 (63%)
Query: 103 VWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
V K+A++ ERE +DM G+ + NHP L+RIL + G P R+D+ + E++
Sbjct: 161 VHKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPQRRDFPLSGYVELR 213
>emb|CAA69753.3| (Y08501) NADH dehydrogenase subunit 9 [Arabidopsis thaliana]
Length = 190
Score = 46.1 bits (107), Expect = 3e-04
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S+ NHP L+RI + G PLRKD + +++
Sbjct: 97 RISPVVSLFPSAGRWEREVWDMFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSGYVQVR 156
>pir||E75060 hydrogenase-4 component g (EC 1.-.-.-) PAB1394 - Pyrococcus abyssi
(strain Orsay)
emb|CAB50378.1| (AJ248287) HYDROGENASE-4 COMPONENT G (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 588
Score = 46.1 bits (107), Expect = 3e-04
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 84 VCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIG--WP 141
V +K ++ NP PS+ +A + ERE D+LG NHP +R+++PE W +P
Sbjct: 111 VFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPRRLVLPEDWPDGVYP 170
Query: 142 LRK 144
LRK
Sbjct: 171 LRK 173
>emb|CAA49376.1| (X69720) 30 kDa subunit of complex I NADH dehydrogenase [Triticum
aestivum]
Length = 287
Score = 46.1 bits (107), Expect = 3e-04
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S NHP L+RI + G PLRKD+ + E++
Sbjct: 194 RISPVVSLFPSAGRWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDFPLSGYVEVR 253
>gb|AAF86492.1|AF279445_1 (AF279445) NADH dehydrogenase subunit 9 [Lupinus angustifolius]
gb|AAF86493.1|AF279446_1 (AF279446) NADH dehydrogenase subunit 9 [Lupinus luteus]
Length = 190
Score = 45.3 bits (105), Expect = 5e-04
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S NHP L+RI + G PLRKD + E++
Sbjct: 97 RISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVR 156
>gb|AAF86491.1|AF279444_1 (AF279444) NADH dehydrogenase subunit 9 [Lupinus albus]
Length = 190
Score = 45.3 bits (105), Expect = 5e-04
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S NHP L+RI + G PLRKD + E++
Sbjct: 97 RISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVR 156
>gb|AAF86490.1|AF279443_1 (AF279443) NADH dehydrogenase subunit 9 [Lupinus mutabilis]
Length = 190
Score = 45.3 bits (105), Expect = 5e-04
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S NHP L+RI + G PLRKD + E++
Sbjct: 97 RISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVR 156
>sp|P80261|NUGM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNIT (COMPLEX I-27KD)
(CI-27KD) (NADH DEHYDROGENASE SUBUNIT 9)
pir||S48062 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nad9 - potato
mitochondrion
emb|CAA56168.1| (X79774) NADH dehydrogenase [Solanum tuberosum]
Length = 190
Score = 45.3 bits (105), Expect = 5e-04
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S NHP L+RI + G PLRKD + E++
Sbjct: 97 RISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVR 156
>sp|Q95748|NUGM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 27 KDA SUBUNIT (COMPLEX I-27KD)
(CI-27KD) (NADH DEHYDROGENASE SUBUNIT 9)
dbj|BAA11532.1| (D82062) subunit 9 of NADH dehydrogenase [Arabidopsis thaliana]
Length = 190
Score = 44.9 bits (104), Expect = 6e-04
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + ++ SA ERE +DM G+S+ NHP L RI + G PLRKD + +++
Sbjct: 97 RISPVVSLFPSAGRWEREVWDMFGVSFINHPDLPRISTDYGFEGHPLRKDLPLSGYVQVR 156
>sp|Q35322|NUGM_ORYSA NADH-UBIQUINONE OXIDOREDUCTASE 27 KD SUBUNIT (COMPLEX I-27KD)
(CI-27KD) (NADH DEHYDROGENASE SUBUNIT 9)
pir||T03231 NADH dehydrogenase (EC 1.6.99.3) chain 9 - rice mitochondrion
dbj|BAA08794.1| (D50099) NADH dehydrogenase subunit 9 [Oryza sativa]
Length = 190
Score = 44.9 bits (104), Expect = 6e-04
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 96 RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
RI + + SA ERE +DM G+S NHP L+RI + G PLRKD+ + E++
Sbjct: 97 RISPVVSPFPSAGRWEREVWDMSGVSSINHPDLRRISTDYGFEGHPLRKDFPLSGYVEVR 156
>gi|11466629 NADH dehydrogenase subunit 9 [Malawimonas jakobiformis]
gb|AAG13679.1|AF295546_5 (AF295546) NADH dehydrogenase subunit 9 [Malawimonas jakobiformis]
Length = 187
Score = 43.0 bits (99), Expect = 0.002
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 69 YHLTRIECGIYQPEEVCIKIFVPR---NNPRIPSIFWVWKSADFQERESYDMLGISYDNH 125
YHL ++ I + IK ++ NN SI ++ +A + ERE +D G+ + N+
Sbjct: 78 YHLLSLKYNI----RINIKTYIDEISLNN----SIIKIYPNAMWSEREVWDSYGVFFKNN 129
Query: 126 PRLKRILMPESWIGWPLRKDYITPNFYEI 154
L+RIL + G+P+RKD+ + EI
Sbjct: 130 NDLRRILTDYGFEGFPMRKDFPLSGYNEI 158
>pir||C75115 hydrogenase related PAB1891 - Pyrococcus abyssi (strain Orsay)
emb|CAB49636.1| (AJ248285) hydrogenase related, subunit [Pyrococcus abyssi]
Length = 175
Score = 43.0 bits (99), Expect = 0.002
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIG--WPLR 143
+K VP++NP +P I ++ + ERE+ +M+GI ++N P +R+ +P+ + +PLR
Sbjct: 91 VKTSVPKDNPVLPDISDIFPISLQFEREAMEMVGIDFENAPDKRRLFLPDDFPEGIYPLR 150
Query: 144 KD 145
D
Sbjct: 151 HD 152
>pir||E72281 hypothetical protein TM1215 - Thermotoga maritima (strain MSB8)
gb|AAD36290.1|AE001778_11 (AE001778) NADH dehydrogenase, 30 kDa subunit, putative [Thermotoga
maritima]
Length = 177
Score = 41.4 bits (95), Expect = 0.007
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 29 LQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKI 88
L + P+ ++ L GY++L D VY L + G + +
Sbjct: 31 LSVAPDRVIAVLETLKSLGYSHLSLMTCIDWIEDSQFELVYILFSWKDG----GKFIVTT 86
Query: 89 FVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGW-PLRKDY 146
+ RNNP+ ++ +W A F ERE ++ G+ + + +K + + E W PLRKD+
Sbjct: 87 RIDRNNPQFVTVKEIWPVARFYEREIHEFFGVKFSGNEDMKPLFL-ELWDDKPPLRKDF 144
>pir||G70749 probable hycE protein - Mycobacterium tuberculosis (strain H37RV)
emb|CAA98923.1| (Z74410) hycE [Mycobacterium tuberculosis]
Length = 492
Score = 41.4 bits (95), Expect = 0.007
Identities = 23/68 (33%), Positives = 35/68 (50%), Gaps = 1/68 (1%)
Query: 79 YQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWI 138
Y V ++ VP +NP I S+ ++ A ERE D+ GI HP+ +R++ W
Sbjct: 52 YPDRRVELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP 111
Query: 139 GW-PLRKD 145
W P+R D
Sbjct: 112 DWHPMRTD 119
>sp|Q9ZDH3|NUOC_RICPR NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
C)
pir||E71692 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain C RP355 -
Rickettsia prowazekii
emb|CAA14815.1| (AJ235271) NADH DEHYDROGENASE I CHAIN C (nuoC) [Rickettsia
prowazekii]
Length = 197
Score = 40.6 bits (93), Expect = 0.012
Identities = 28/125 (22%), Positives = 60/125 (47%), Gaps = 13/125 (10%)
Query: 31 IKPEDWHSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFV 90
+K + V+ ++G ++ + + ++V VY+L ++ + + IK +
Sbjct: 43 LKESEELRFTVLTDLFGVDFPKKEKRFEV--------VYNLLSLKLN----KNLIIKTHI 90
Query: 91 PRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPN 150
IPS + +A + E E YDM G++++ + +RIL + G PLRKD+
Sbjct: 91 SEKES-IPSAMQILSAAYWYELEVYDMYGVNFNGNNDKRRILTDYDFEGHPLRKDFPLTG 149
Query: 151 FYEIQ 155
+ +++
Sbjct: 150 YTQVK 154
>pir||B75114 probable NADH dehydrogenase I, chain C PAB0494 - Pyrococcus abyssi
(strain Orsay)
emb|CAB49627.1| (AJ248285) NADH dehydrogenase I, subunit C, putative [Pyrococcus
abyssi]
Length = 174
Score = 40.2 bits (92), Expect = 0.015
Identities = 26/115 (22%), Positives = 60/115 (51%), Gaps = 19/115 (16%)
Query: 37 HSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRN--N 94
H+ ++L + ++L+ G + VYHL IE G + +K+ +PR+
Sbjct: 49 HNFPLMLQISAVDWLKE---------GEIELVYHLMNIELGTH----AMVKVRIPRDLEK 95
Query: 95 PRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILM---PESWIGWPLRKDY 146
++P++ ++ +A+ ER+ +D G+ ++ + +++ + PE + +P RKD+
Sbjct: 96 AKVPTVRDIYPAAETYERDVHDFFGVYFEGNDKMEMPWILDDPERGL-YPHRKDF 149
>pir||F71017 hypothetical protein PH1435 - Pyrococcus horikoshii
dbj|BAA30542.1| (AP000006) 174aa long hypothetical protein [Pyrococcus horikoshii]
Length = 174
Score = 39.5 bits (90), Expect = 0.026
Identities = 19/62 (30%), Positives = 38/62 (60%), Gaps = 2/62 (3%)
Query: 86 IKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIG--WPLR 143
+K P+++P +P I ++ + ERE+ +M+GI ++N P +R+ +P+ + +PLR
Sbjct: 90 VKTSAPKDDPVLPDISDIFPISLQFEREAMEMVGIDFENAPDKRRLFLPDDFPEGIYPLR 149
Query: 144 KD 145
D
Sbjct: 150 HD 151
>gb|AAG57828.1|AE005500_7 (AE005500) large subunit of hydrogenase 3 (part of FHL complex)
[Escherichia coli O157:H7]
Length = 569
Score = 38.7 bits (88), Expect = 0.045
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 84 VCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIG--WP 141
V +++ V N P PS+ +A + ERE DM G+ P +R+++P+ W +P
Sbjct: 88 VTVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYP 147
Query: 142 LRKD 145
LRKD
Sbjct: 148 LRKD 151
>sp|P16431|HYCE_ECOLI FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (FHL SUBUNIT 5)
(HYDROGENASE-3 COMPONENT E)
pir||S08623 hydrogenase (EC 1.18.99.1) 3 chain 5 precursor - Escherichia coli
emb|CAA35550.1| (X17506) hycE [Escherichia coli]
gb|AAA69231.1| (U29579) formate hydrogenlyase subunit 5 [Escherichia coli]
gb|AAC75763.1| (AE000356) large subunit of hydrogenase 3 (part of FHL complex)
[Escherichia coli K12]
prf||2104213E hycE gene [Escherichia coli]
Length = 569
Score = 38.3 bits (87), Expect = 0.059
Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 2/64 (3%)
Query: 84 VCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIG--WP 141
+ +++ V N P PS+ +A + ERE DM G+ P +R+++P+ W +P
Sbjct: 88 ITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYP 147
Query: 142 LRKD 145
LRKD
Sbjct: 148 LRKD 151
>dbj|BAB08565.1| (AB015479) gene_id:MTE17.19~pir||T04792~similar to unknown protein
[Arabidopsis thaliana]
Length = 766
Score = 36.4 bits (82), Expect = 0.23
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 5 LSAWLVKHGLVHRSLGFDYQ--GIETL-----QIKPED-WHSIAVILYVYGYNYLRSQCA 56
L+ ++K G++ RS FD GI T+ Q+KPE W ++ + +N S
Sbjct: 140 LTKVILKQGILSRSAAFDGNSYGISTVKDISTQLKPEGFWLNVQHDAFYAQHNLSMSSFL 199
Query: 57 YDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYD 116
+S ++ +L+ E ++ I RN P+ F + ++Y
Sbjct: 200 LSISKTVIID---YLSSPEVNFFRN----IGRRFGRNGPKFVFRFLEKDDVEVSTNQTYG 252
Query: 117 MLGISYDNHPRLKR----ILMPESWIGWPLRKDYITPNFYEIQDAH 158
L N LK +L+P+S+I WP+ Y+ P +QDAH
Sbjct: 253 SLA---GNLTFLKTFASGVLVPKSYI-WPIESQYLLPRTSFVQDAH 294
>gb|AAG57597.1|AE005478_7 (AE005478) hydrogenase 4 subunit [Escherichia coli O157:H7]
Length = 571
Score = 33.6 bits (75), Expect = 1.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 91 PRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIG--WPLRKD 145
P PR+P+ W ERE DM G+ P +R+++P+ W PLRKD
Sbjct: 105 PSVTPRVPAAVW-------GEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154
>dbj|BAA16375.1| (D90877) FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (FHL SUBUNIT 5)
(HYDROGENASE 3, SUBUNIT 5). [Escherichia coli]
Length = 570
Score = 33.6 bits (75), Expect = 1.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 91 PRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIG--WPLRKD 145
P PR+P+ W ERE DM G+ P +R+++P+ W PLRKD
Sbjct: 120 PSVTPRVPAAVW-------GEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 169
>sp|P77329|HYFG_ECOLI HYDROGENASE-4 COMPONENT G
pir||F65024 hypothetical protein b2487 - Escherichia coli (strain K-12)
gb|AAB88569.1| (M63654) HyfG [Escherichia coli]
gb|AAC75540.1| (AE000335) hydrogenase 4 subunit [Escherichia coli K12]
Length = 555
Score = 33.6 bits (75), Expect = 1.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 91 PRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIG--WPLRKD 145
P PR+P+ W ERE DM G+ P +R+++P+ W PLRKD
Sbjct: 105 PSVTPRVPAAVW-------GEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154
>gb|AAG60816.1|AF322012_121 (AF322013) ID254 [Bradyrhizobium japonicum]
Length = 444
Score = 32.5 bits (72), Expect = 3.4
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 69 YHLTRIEC----GIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDN 124
+H +EC P E C+K + NN R P +V + + YD
Sbjct: 263 FHAPEVECIGKGKAAAPYEFCVKASIVTNNQRAPGGLFVLHACSLPDN--------PYDG 314
Query: 125 HPRLKRILMPESWIGWPLRKDYITPNF 151
H I ES G P+ + Y+ +
Sbjct: 315 HTLRNVIERTESLTGCPIERAYVDKGY 341
>pir||T24335 hypothetical protein T01H3.5 - Caenorhabditis elegans
emb|CAA92689.1| (Z68317) T01H3.5 [Caenorhabditis elegans]
Length = 163
Score = 30.9 bits (68), Expect = 9.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 67 SVYHLTRIECGIYQP----EEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDM 117
SV HLT ++ +P EE+ K+++ N P WK FQE+E+ +M
Sbjct: 101 SVKHLTTLKSKWSEPWQTGEEIVAKVYLKPKNHENP-----WKDGTFQEKEAVEM 150
Database: nr
Posted date: Mar 14, 2001 1:25 PM
Number of letters in database: 201,912,487
Number of sequences in database: 640,428
Lambda K H
0.324 0.143 0.474
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75371262
Number of Sequences: 640428
Number of extensions: 3175118
Number of successful extensions: 4728
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4623
Number of HSP's gapped (non-prelim): 108
length of query: 158
length of database: 201,912,487
effective HSP length: 44
effective length of query: 114
effective length of database: 173,733,655
effective search space: 19805636670
effective search space used: 19805636670
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 68 (30.9 bits)
Lotus japonicus(Cp)