BLAST2 result
BLASTP 2.1.2 [Oct-19-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33182.1 230 aa
(230 letters)
Database: nr
640,428 sequences; 201,912,487 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA06191.1| (AJ004882) NADH-plastoquinone oxidoreductase sub... 404 e-112
sp|P06409|NUKC_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 400 e-111
gi|11465961 NADH dehydrogenase 27kD subunit [Nicotiana tabacum] ... 400 e-111
gi|7525037 photosystem II G protein [Arabidopsis thaliana] >gi|6... 389 e-107
sp|P52766|NUKC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 389 e-107
sp|P31175|NUKC_SOYBN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT K >g... 384 e-106
sp|P26304|NUKC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 382 e-105
gi|11497532 NADH dehydrogenase 32kDa subunit [Spinacia oleracea]... 379 e-104
gi|11466791 psbG; PSII G protein [Oryza sativa] >gi|131323|sp|P1... 376 e-103
ref|NP_043029.1| ndhK [Zea mays] >gi|1171864|sp|P06670|NUKC_MAIZ... 376 e-103
pir||F2ZMG NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nd... 376 e-103
emb|CAB67131.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 346 1e-94
gi|11466706 psbG [Marchantia polymorpha] >gi|131322|sp|P06410|NU... 305 3e-82
gi|11467814 subunit K of NADH-ubiquinone oxidoreductase [Nephros... 286 2e-76
gi|11466396 subunit K of NADH-ubiquinone oxidoreductase [Mesosti... 286 2e-76
sp|Q9XBL7|NUKC_ANAVA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 273 1e-72
emb|CAB45640.1| (AJ012180) NDH-K protein [Anabaena PCC7120] 273 2e-72
sp|Q44240|NUKC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 268 3e-71
sp|P19050|NUKC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 268 6e-71
sp|P17062|NUJC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 237 1e-61
pir||C71838 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 176 2e-43
pir||E64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 176 2e-43
dbj|BAB22592.1| (AK003132) putative [Mus musculus] 173 1e-42
sp|P42026|NUKM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 172 3e-42
gb|AAH01715.1|AAH01715 (BC001715) Similar to CG9172 gene product... 171 5e-42
sp|O75251|NUKM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 171 5e-42
gb|AAC27669.1| (AC005329) NUKM_HUMAN, partial CDS; COMPLE; CI-20... 171 5e-42
gb|AAF48552.1| (AE003500) CG9172 gene product [Drosophila melano... 169 2e-41
gi|11466592 NADH dehydrogenase subunit 10 [Rhodomonas salina] >g... 168 5e-41
gb|AAF56901.1| (AE003770) CG2014 gene product [Drosophila melano... 168 8e-41
pir||H81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 164 7e-40
sp|Q43844|NUKM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 164 7e-40
emb|CAC08301.1| (AL392148) NADH dehydrogenase subunit [Streptomy... 164 9e-40
sp|O67334|NUOB_AQUAE NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 164 1e-39
pir||S37059 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B... 164 1e-39
sp|P56897|NUB2_RHIME NADH DEHYDROGENASE I CHAIN B 2 (NADH-UBIQUI... 163 2e-39
pir||D82821 NADH-ubiquinone oxidoreductase, NQO6 subunit XF0306 ... 162 3e-39
sp|Q94360|NUKM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 20 ... 162 3e-39
sp|Q42577|NUKM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 162 3e-39
gb|AAF91434.1| (AF281035) NADH-ubiquinone oxidoreductase subunit... 162 4e-39
pir||T44818 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain P... 162 4e-39
gi|11466261 NADH dehydrogenase subunit 10 [Tetrahymena pyriformi... 162 4e-39
sp|P42027|NUKM_BRAOL NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 162 4e-39
gb|AAG57416.1|AE005461_1 (AE005461) NADH dehydrogenase I chain B... 161 6e-39
gb|AAF03193.1|AF110138_25 (AF110138) NADH dehydrogenase subunit ... 161 6e-39
gi|11466535 NADH dehydrogenase, subunit 10 [Reclinomonas america... 161 6e-39
sp|P33598|NUOB_ECOLI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 161 6e-39
emb|CAB65525.1| (AJ250340) subunit NUKM of protein NADH:Ubiquino... 160 1e-38
emb|CAC12098.1| (AL445066) probable NADH dehydrogenase, chain B ... 160 2e-38
sp|Q9ZDH2|NUOB_RICPR NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 160 2e-38
gb|AAF91429.1|AF279902_1 (AF279902) NADH-ubiquinone oxidoreducta... 159 2e-38
sp|P57253|NUOB_BUCAI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 159 4e-38
gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit... 159 4e-38
sp|O47950|NUKM_NEUCR PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 19.... 159 4e-38
gb|AAA79257.1| (M26930) photosystem II protein G [Paramecium aur... 158 7e-38
sp|O85274|NUOB_ERWCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 157 9e-38
sp|O84970|NUOB_RHOCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 157 1e-37
pir||C83316 NADH dehydrogenase I chain B PA2638 [imported] - Pse... 156 2e-37
pir||T34623 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 156 3e-37
gb|AAA03036.1| (M93015) NADH dehydrogenase [Paracoccus denitrifi... 156 3e-37
sp|Q56218|NQO6_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NAD... 155 3e-37
pir||C75388 NADH dehydrogenase I, B subunit - Deinococcus radiod... 155 4e-37
sp|O68853|NUB1_RHIME NADH DEHYDROGENASE I CHAIN B 1 (NADH-UBIQUI... 155 4e-37
sp|P95180|NUOB_MYCTU NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 154 7e-37
pir||H81221 NADH dehydrogenase I, B chain NMB0242 [imported] - N... 154 1e-36
sp|P29918|NQO6_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NAD... 154 1e-36
gb|AAF65732.1|AF228525_2 (AF228525) F420H2 dehydrogenase subunit... 152 4e-36
gi|8928600 NADH dehydrogenase subunit 10 [Paramecium aurelia] 152 5e-36
sp|P15602|NUKM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 152 5e-36
pir||F81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 151 9e-36
gb|AAC12755.1| (AF055637) NADH-ubiqionone oxidoreductase subunit... 150 1e-35
sp|Q26783|NUKM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 148 7e-35
gb|AAG19138.1| (AE005011) NADH dehydrogenase/oxidoreductase; Ndh... 141 1e-32
emb|CAB57637.1| (Y18930) hypothetical protein [Sulfolobus solfat... 137 1e-31
pir||A75114 NADH dehydrogenase I chain B PAB0493 - Pyrococcus ab... 133 2e-30
pir||C72621 probable NADH dehydrogenase (ubiquinone) chain 10 AP... 133 2e-30
pir||D72281 hypothetical protein TM1214 - Thermotoga maritima (s... 132 3e-30
pir||D71019 probable NADH-ubiquinone oxidoreductase subunit - Py... 130 2e-29
dbj|BAA16121.1| (D90860) NADH DEHYDROGENASE I CHAIN B (EC 1.6.5.... 119 3e-26
gb|AAB98505.1| (U67501) carbon monoxide dehydrogenase, hydrogena... 115 5e-25
pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jan... 115 5e-25
gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, put... 113 2e-24
emb|CAA76119.1| (Y16191) echC [Methanosarcina barkeri] 107 2e-22
emb|CAB52769.1| (AJ243655) hydrogenase small subunit [Methanobac... 106 2e-22
pir||E69151 formate hydrogenlyase, subunit 7 - Methanobacterium ... 106 3e-22
pir||T51316 probable CO-induced hydrogenase complex chain CooL [... 105 6e-22
sp|Q31791|NUKC_ANTFO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 105 6e-22
pir||D75115 co-induced hydrogenase related, chain l PAB1890 - Py... 101 9e-21
pir||E71017 probable NADH-ubiquinone oxidoreductase subunit - Py... 99 3e-20
sp|P16433|HYCG_ECOLI FORMATE HYDROGENLYASE SUBUNIT 7 (FHL SUBUNI... 99 3e-20
emb|CAA35552.1| (X17506) hycG [Escherichia coli] >gi|1093500|prf... 99 4e-20
gb|AAG57826.1|AE005500_5 (AE005500) hydrogenase activity [Escher... 98 8e-20
gb|AAG57599.1|AE005478_9 (AE005478) hydrogenase 4 Fe-S subunit [... 97 2e-19
dbj|BAA16377.1| (D90877) probable hydrogenase 3 protein 7 [Esche... 97 2e-19
sp|P77668|HYFI_ECOLI HYDROGENASE-4 COMPONENT I >gi|7443160|pir||... 97 2e-19
pir||B64470 formate hydrogenlyase, subunit 7 - Methanococcus jan... 94 1e-18
gb|AAB88386.1| (AF034788) formate hydrogenlyase subunit 7 [Metha... 94 1e-18
gb|AAG43130.1|AF060512_1 (AF060512) My017 protein [Homo sapiens] 90 2e-17
pir||C70850 probable oxidoreductase subunit - Mycobacterium tube... 87 2e-16
pir||C75060 hydrogenase (EC 1.-.-.-) 4 component I PAB1396 [impo... 84 2e-15
emb|CAC23321.1| (AL512966) formate hydrogenlyase, subunit 7 [Sul... 83 3e-15
pir||E69032 formate hydrogenlyase, subunit 7 - Methanobacterium ... 82 8e-15
emb|CAB52790.1| (AJ243656) hydrogenase small subunit [Methanobac... 81 1e-14
pir||PX0053 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) 20K cha... 70 2e-11
sp|Q60340|FRHG_METJA COENZYME F420 HYDROGENASE GAMMA SUBUNIT (8-... 56 3e-07
sp|P19498|FRHG_METTH COENZYME F420 HYDROGENASE GAMMA SUBUNIT (8-... 53 3e-06
gb|AAB85778.1| (AE000895) coenzyme F420-reducing hydrogenase, ga... 53 3e-06
pir||C35620 coenzyme F420 hydrogenase (EC 1.12.99.1) gamma chain... 52 5e-06
emb|CAA74092.1| (Y13763) F420-reducing hydrogenase isoenzyme II ... 52 9e-06
pir||S24797 coenzyme F420-reducing hydrogenase chain furG [simil... 51 2e-05
emb|CAA74096.1| (Y13764) F420-reducing hydrogenase isoenzyme I g... 50 3e-05
dbj|BAA16122.1| (D90860) NADH DEHYDROGENASE I CHAIN B (EC 1.6.5.... 49 6e-05
sp|Q00393|FRHG_METVO COENZYME F420 HYDROGENASE GAMMA SUBUNIT (8-... 49 6e-05
gb|AAB94935.1| (AF039208) NiFe hydrogenase delta subunit [Thermo... 44 0.002
pir||F64448 methylviologen-reducing hydrogenase gamma chain homo... 44 0.002
gb|AAB21279.1| NADH:ubiquinone oxidoreductase (complex I) iron-s... 42 0.006
pir||S16726 methylviologen-reducing hydrogenase chain vhcG - Met... 39 0.038
gb|AAF61853.1|AF176650_3 (AF176650) sulfhydrogenase II subunit d... 39 0.050
sp|Q58136|Y726_METJA HYPOTHETICAL PROTEIN MJ0726 >gi|2127827|pir... 39 0.066
pir||C75133 cytochrome-c3 hydrogenase delta chain PAB1786 - Pyro... 38 0.11
pir||A71075 probable cytochrome-c3 hydrogenase delta chain - Pyr... 37 0.19
pir||I39733 hydrogenase small chain - Anabaena variabilis >gi|10... 37 0.25
pir||S48835 cytochrome-c3 hydrogenase (EC 1.12.2.1) delta chain ... 36 0.57
pir||A75070 cytochrome-c3 hydrogenase (EC 1.12.2.1) delta chain ... 35 0.75
gi|11498969 methylviologen-reducing hydrogenase, subunit gamma (... 35 0.98
gb|AAK11582.1|AF323616_1 (AF323616) HupS [Clostridium acetobutyl... 34 1.3
pdb|2FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni... 34 1.3
gb|AAB53703.1| (U88400) bidirectional hydrogenase small subunit ... 34 1.3
pdb|1FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni... 34 1.3
sp|P12943|PHNS_DESGI PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNI... 34 1.3
pir||HQDVSG cytochrome-c3 hydrogenase (EC 1.12.2.1) (NiFe) small... 34 1.3
dbj|BAB14543.1| (AK023360) unnamed protein product [Homo sapiens] 34 1.7
pdb|1FRF|S Chain S, Crystal Structure Of The Ni-Fe Hydrogenase F... 34 1.7
pir||S22199 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19... 34 1.7
sp|P28624|HIS7_PHYPR IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE (IG... 34 1.7
gb|AAF43137.1|AF216303_1 (AF216303) [NiFe] hydrogenase small sub... 33 3.8
pir||C59304 methylviologen-reducing hydrogenase gamma chain homo... 33 3.8
pir||S67477 F420-nonreducing hydrogenase (EC 1.12.99.-) vhtG pre... 33 3.8
pir||S24800 methylviologen-reducing hydrogenase chain vhuG - Met... 33 3.8
sp|P17086|URE1_PROMI UREASE ALPHA SUBUNIT (UREA AMIDOHYDROLASE) ... 32 4.9
pir||E82169 conserved hypothetical protein VC1698 [imported] - V... 32 6.5
pir||D70383 hydrogenase (EC 1.18.99.1) (NiFe) 1B small chain pre... 32 6.5
sp|Q46847|MBHT_ECOLI HYDROGENASE-2 SMALL CHAIN PRECURSOR (NIFE H... 32 6.5
dbj|BAB05925.1| (AP001514) oxoglutarate dehydrogenase [Bacillus ... 32 8.5
>emb|CAA06191.1| (AJ004882) NADH-plastoquinone oxidoreductase subunit, NdhK [Pisum
sativum]
Length = 227
Score = 404 bits (1027), Expect = e-112
Identities = 199/230 (86%), Positives = 212/230 (91%), Gaps = 3/230 (1%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
MNSIEFPL+D+ T+NSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1 MNSIEFPLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
STVRGVDKLIPVDVYLPGCPPKPE+++DAITKLRKKISREI ED +S QRENR FTT
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIDED---PISYQRENRSFTT 177
Query: 181 NHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQKVQYPPRNEIVN 230
NHKF V RSTHTGN +Q LF+QP S SE++SDTF +Y+KVQYP NE VN
Sbjct: 178 NHKFDVGRSTHTGNSNQGLFYQPSSISEMTSDTFLKYKKVQYPATNEKVN 227
>sp|P06409|NUKC_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
pir||F2NTG psbG protein - common tobacco chloroplast
Length = 247
Score = 400 bits (1017), Expect = e-111
Identities = 194/230 (84%), Positives = 212/230 (91%), Gaps = 5/230 (2%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
MNSI+FPL+DRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 23 MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 83 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
STVRGVDKLIPVDVYLPGCPPKPE+++DAITKLRKKISRE++ED+ + SQR NRCFTT
Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRELYEDR---IRSQRANRCFTT 199
Query: 181 NHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQKVQYPPRNEIVN 230
NHKF+V+ S HTGNYDQ + +QPPSTSEI ++ FF+Y+ P E+VN
Sbjct: 200 NHKFHVQHSIHTGNYDQRVLYQPPSTSEIPTEIFFKYKNSVSSP--ELVN 247
>gi|11465961 NADH dehydrogenase 27kD subunit [Nicotiana tabacum]
emb|CAA77357.1| (Z00044) NADH dehydrogenase 27kD subunit [Nicotiana tabacum]
prf||1211235AK bhpB gene [Nicotiana tabacum]
Length = 284
Score = 400 bits (1017), Expect = e-111
Identities = 194/230 (84%), Positives = 212/230 (91%), Gaps = 5/230 (2%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
MNSI+FPL+DRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 60 MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
STVRGVDKLIPVDVYLPGCPPKPE+++DAITKLRKKISRE++ED+ + SQR NRCFTT
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRELYEDR---IRSQRANRCFTT 236
Query: 181 NHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQKVQYPPRNEIVN 230
NHKF+V+ S HTGNYDQ + +QPPSTSEI ++ FF+Y+ P E+VN
Sbjct: 237 NHKFHVQHSIHTGNYDQRVLYQPPSTSEIPTEIFFKYKNSVSSP--ELVN 284
>gi|7525037 photosystem II G protein [Arabidopsis thaliana]
sp|P56756|NUKC_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
dbj|BAA84389.1| (AP000423) photosystem II G protein [Arabidopsis thaliana]
Length = 225
Score = 389 bits (988), Expect = e-107
Identities = 186/218 (85%), Positives = 205/218 (93%), Gaps = 3/218 (1%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
MNSI+FP++DRTT+NSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1 MNSIKFPILDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
STVRGVDKLIPVDVYLPGCPPKPE+++DAITKLRKKI+REI++D+ + Q+ NRCFTT
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREIYKDR---IRPQQGNRCFTT 177
Query: 181 NHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQ 218
NHKF+V RS H GNYDQ L + P STSEIS++TFF+Y+
Sbjct: 178 NHKFFVVRSPHIGNYDQELLYPPSSTSEISTETFFKYK 215
>sp|P52766|NUKC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
pir||T09637 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK - yellow
lupine chloroplast
gb|AAB86906.1| (U27654) NADH-ubiquinone oxidoreductase subunit [Lupinus luteus]
Length = 226
Score = 389 bits (988), Expect = e-107
Identities = 197/227 (86%), Positives = 206/227 (89%), Gaps = 6/227 (2%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
MNSIEFPL DRTTQNSVISTTLN+LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1 MNSIEFPLRDRTTQNSVISTTLNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIA+GACTITGGMFSTDSY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAIGACTITGGMFSTDSY 120
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRE--NRCF 178
STVRGVDKLIPVDVYLPGCPPKPE+++DAITKLRKKISREI+E Q + SQRE NR F
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEKQ---IRSQRENKNRFF 177
Query: 179 TTNHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQK-VQYPP 224
TTNHKF+V RST TGNYDQ F QPPSTSEIS F +K VQYPP
Sbjct: 178 TTNHKFHVGRSTQTGNYDQGFFFQPPSTSEISLTHFSNIKKRVQYPP 224
>sp|P31175|NUKC_SOYBN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT K
pir||S27978 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK - soybean
chloroplast (fragment)
emb|CAA45612.1| (X64329) ndhK [Glycine max]
Length = 224
Score = 384 bits (977), Expect = e-106
Identities = 188/215 (87%), Positives = 201/215 (93%), Gaps = 3/215 (1%)
Query: 4 IEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL 63
IEFPL+D+TT+NSVISTTL DLSNWSRL SLWPLLYGTSCCFIEFASLIGSRFDFDRYGL
Sbjct: 1 IEFPLLDQTTKNSVISTTLIDLSNWSRLPSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL 60
Query: 64 VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 123
VPRSSPRQADLILT GTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV
Sbjct: 61 VPRSSPRQADLILTVGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTV 120
Query: 124 RGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTTNHK 183
RGVDKLIPVDVYLPGCP KPE+I+DAITKLRK+ISREI+E+Q +SSQRENRCFTTNHK
Sbjct: 121 RGVDKLIPVDVYLPGCPTKPEAIIDAITKLRKEISREIYENQ---MSSQRENRCFTTNHK 177
Query: 184 FYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQ 218
F++ STHTGNY Q LF+Q PSTSEI SDTFF+ Q
Sbjct: 178 FHIGYSTHTGNYGQELFYQLPSTSEIPSDTFFKVQ 212
>sp|P26304|NUKC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
pir||S09666 psbG protein - wheat chloroplast
gb|AAA84731.1| (J04954) thylakoid membrane protein [Triticum aestivum]
Length = 245
Score = 382 bits (970), Expect = e-105
Identities = 185/216 (85%), Positives = 200/216 (91%), Gaps = 3/216 (1%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
MN IEFPL+D+T+ NSVISTT NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 21 MNLIEFPLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 80
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 81 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 140
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
STVRGVDKLIPVDVYLPGCPPKPE+++DA+TKLRKKISREI ED+T SQ +NRCFTT
Sbjct: 141 STVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISREIVEDRT---LSQNKNRCFTT 197
Query: 181 NHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFR 216
+HK YV RSTHTG Y+Q L +Q PST +ISS+TFF+
Sbjct: 198 SHKLYVRRSTHTGTYEQELLYQSPSTLDISSETFFK 233
>gi|11497532 NADH dehydrogenase 32kDa subunit [Spinacia oleracea]
emb|CAB88733.1| (AJ400848) NADH dehydrogenase 32kDa subunit [Spinacia oleracea]
Length = 281
Score = 379 bits (964), Expect = e-104
Identities = 188/232 (81%), Positives = 205/232 (88%), Gaps = 7/232 (3%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
MNSIEFPL+D+ QNSVISTT NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 55 MNSIEFPLLDQIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 114
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPR+SPRQADLILTAGTVTMKMAPSL+RLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 115 YGLVPRASPRQADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSY 174
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
STVRGVDKLIPVDVYLPGCPPKPE+++DAITKLRKKISREI+ED+ + SQ +NRCFT
Sbjct: 175 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDR---IKSQPKNRCFTI 231
Query: 181 NHKFYVERSTHTGNYDQVLF--HQPPSTSEISSDTFFRYQKVQYPPRNEIVN 230
NHKF V RS HTGNYDQ L ++ PSTSEI +TFF+Y+ E+VN
Sbjct: 232 NHKFRVGRSIHTGNYDQALLYKYKSPSTSEIPPETFFKYKNA--ASSRELVN 281
>gi|11466791 psbG; PSII G protein [Oryza sativa]
sp|P12159|NUKC_ORYSA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
pir||F2RZG psbG protein - rice chloroplast
emb|CAA34000.1| (X15901) psbG; PSII G protein [Oryza sativa]
prf||1603356AF photosystem II G protein [Oryza sativa]
Length = 246
Score = 376 bits (955), Expect = e-103
Identities = 182/216 (84%), Positives = 200/216 (92%), Gaps = 3/216 (1%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
M+ IEFPL+D+ + NSVISTTL DLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 22 MSLIEFPLLDQRSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 82 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
STVRGVDKLIPVDVYLPGCPPKPE+++DA+TKLRKKISREI ED+T SQ++NRCFTT
Sbjct: 142 STVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKISREIVEDRT---LSQKKNRCFTT 198
Query: 181 NHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFR 216
+HK YV RST+TG Y+Q L +Q PST +ISS+TFF+
Sbjct: 199 SHKLYVRRSTNTGTYEQELLYQSPSTLDISSETFFK 234
>ref|NP_043029.1| ndhK [Zea mays]
sp|P06670|NUKC_MAIZE NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
emb|CAA60290.1| (X86563) ndhK [Zea mays]
Length = 248
Score = 376 bits (954), Expect = e-103
Identities = 182/216 (84%), Positives = 199/216 (91%), Gaps = 1/216 (0%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
M+ IEFPL+D+T+ NSVISTT NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 22 MSLIEFPLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 82 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
STVRGVDKLIPVDVYLPGCPPKPE+++DA+TKLRKKI+REI ED+T SQ++NR FTT
Sbjct: 142 STVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKIAREIIEDRT-LCQSQKKNRSFTT 200
Query: 181 NHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFR 216
HK YV RSTHTG Y+Q L +Q PST +ISS+TFF+
Sbjct: 201 RHKLYVRRSTHTGTYEQELLYQSPSTLDISSETFFK 236
>pir||F2ZMG NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK - maize
chloroplast
emb|CAA35482.1| (X17438) PSII-G protein (AA 1 - 248) [Zea mays]
gb|AAA84484.1| (M12704) PSII-G [Zea mays]
Length = 248
Score = 376 bits (954), Expect = e-103
Identities = 182/216 (84%), Positives = 199/216 (91%), Gaps = 1/216 (0%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
M+ IEFPL+D+T+ NSVISTT NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 22 MSLIEFPLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 82 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
STVRGVDKLIPVDVYLPGCPPKPE+++DA+TKLRKKI+REI ED+T SQ++NR FTT
Sbjct: 142 STVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKIAREIIEDRT-LCQSQKKNRSFTT 200
Query: 181 NHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFR 216
HK YV RSTHTG Y+Q L +Q PST +ISS+TFF+
Sbjct: 201 RHKLYVRRSTHTGTYEQELLYQSPSTLDISSETFFK 236
>emb|CAB67131.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit K [Oenothera
elata subsp. hookeri]
Length = 247
Score = 346 bits (879), Expect = 1e-94
Identities = 174/218 (79%), Positives = 186/218 (84%), Gaps = 3/218 (1%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
MNSIEF L+ R TQNSVISTT NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 23 MNSIEFTLLARRTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY
Sbjct: 83 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
ST + CPPKPE+I+DAITKLRKKISREI+ED+ SQ ENRCFTT
Sbjct: 143 STGSWSRQANSCRCLFASCPPKPEAIIDAITKLRKKISREIYEDR---FRSQEENRCFTT 199
Query: 181 NHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQ 218
NHKF+V S HTGNYD L +Q PSTSEI+S+TFF+Y+
Sbjct: 200 NHKFHVGPSMHTGNYDPGLLYQLPSTSEIASETFFKYK 237
>gi|11466706 psbG [Marchantia polymorpha]
sp|P06410|NUKC_MARPO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
pir||F2LVG psbG protein - liverwort (Marchantia polymorpha) chloroplast
emb|CAA28088.1| (X04465) psbG [Marchantia polymorpha]
Length = 243
Score = 305 bits (773), Expect = 3e-82
Identities = 152/219 (69%), Positives = 177/219 (80%), Gaps = 4/219 (1%)
Query: 2 NSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 61
NSIE I++T NS+I TT ND SNW+RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY
Sbjct: 24 NSIESSFINKTLTNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 83
Query: 62 GLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYS 121
GLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY+
Sbjct: 84 GLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYT 143
Query: 122 TVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTTN 181
TVRGVDKLIPVD+YLPGCPPKPE+I+DAI KLRKKI++EI+E++ ++ R FT N
Sbjct: 144 TVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKIAQEIYEEKK---ILKKGTRFFTLN 200
Query: 182 HKF-YVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQK 219
H+F + + F Q TS++ +T +++
Sbjct: 201 HQFNFFSNLDNPKLTSSNQFFQSKKTSKVLLETSLTFKE 239
>gi|11467814 subunit K of NADH-ubiquinone oxidoreductase [Nephroselmis olivacea]
gb|AAD54836.1|AF137379_59 (AF137379) subunit K of NADH-ubiquinone oxidoreductase
[Nephroselmis olivacea]
Length = 237
Score = 286 bits (724), Expect = 2e-76
Identities = 143/197 (72%), Positives = 162/197 (81%), Gaps = 5/197 (2%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68
I + N++I TTLNDL NW+RLSSLWPLLYGTSCCFIEFA LIGSRFDFDR+GLVPRSS
Sbjct: 21 ITQELANNLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLIGSRFDFDRFGLVPRSS 80
Query: 69 PRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 128
PRQADLI+TAGTVTMKMAPSLVRLYEQMP+PKYVIAMGACTITGGMFSTDSYSTVRGVDK
Sbjct: 81 PRQADLIITAGTVTMKMAPSLVRLYEQMPDPKYVIAMGACTITGGMFSTDSYSTVRGVDK 140
Query: 129 LIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSS-QRENRCFTTNHKFYVE 187
LIPVDVYLPGCPPKPE+I+DA+ KLRKK+++E QT+ ++ +R FT +H+
Sbjct: 141 LIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQE----QTAERRGIEQIHRYFTLSHRLQPV 196
Query: 188 RSTHTGNYDQVLFHQPP 204
TG Y Q Q P
Sbjct: 197 SPILTGQYLQAETRQAP 213
>gi|11466396 subunit K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
gb|AAF43840.1|AF166114_52 (AF166114) subunit K of NADH-ubiquinone oxidoreductase [Mesostigma
viride]
Length = 247
Score = 286 bits (723), Expect = 2e-76
Identities = 140/205 (68%), Positives = 162/205 (78%), Gaps = 3/205 (1%)
Query: 3 SIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 62
+IE P + + N +I TTLNDL NW+RLSSLWPLLYGTSCCFIEFA L+GSRFDFDR+G
Sbjct: 24 NIEKPQVTQNVSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFG 83
Query: 63 LVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYST 122
LVPR SPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYST
Sbjct: 84 LVPRCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYST 143
Query: 123 VRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTTNH 182
VRGVDKLIPVDVYLPGCPPKPE+I+DA+ KLRKK+++E ++ + R + + H
Sbjct: 144 VRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQENLVERGKLAQTHRYH---SIKH 200
Query: 183 KFYVERSTHTGNYDQVLFHQPPSTS 207
+ + +TG Y Q P S
Sbjct: 201 ELTLSSPVYTGKYLNSSARQTPPRS 225
>sp|Q9XBL7|NUKC_ANAVA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K (NDH-K)
emb|CAB45647.1| (AJ012181) NDH-K protein [Anabaena variabilis]
Length = 245
Score = 273 bits (692), Expect = 1e-72
Identities = 133/210 (63%), Positives = 165/210 (78%), Gaps = 5/210 (2%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
+N IE P + + +VI TT++DL NW+RLSSLWPLL+GT+CCFIEFA+LIGSRFDFDR
Sbjct: 16 INPIERPTVTQDLSENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDR 75
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
+GL+PRSSPRQADLI+TAGT+TMKMAP LVRLYEQMPEPKYVIAMGACTITGGMFS DS
Sbjct: 76 FGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSP 135
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
+ VRGVDKLIPVDVYLPGCPP+PE+I+DAI KLRKKI+ + ++++ ++ +R ++T
Sbjct: 136 TAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKIANDSMQERS---LIRQTHRFYST 192
Query: 181 NHKFYVERSTHTGNY--DQVLFHQPPSTSE 208
H TG Y + F+ P +E
Sbjct: 193 THNLKPVAEILTGKYMQSETRFNPPKELTE 222
>emb|CAB45640.1| (AJ012180) NDH-K protein [Anabaena PCC7120]
Length = 245
Score = 273 bits (690), Expect = 2e-72
Identities = 133/210 (63%), Positives = 165/210 (78%), Gaps = 5/210 (2%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
+N IE P I + +VI TT++DL NW+RLSSLWPLL+GT+CCFIEFA+LIGSRFDFDR
Sbjct: 16 INPIERPTITQDLSENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDR 75
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
+GL+PRSSPRQADLI+TAGT+TMKMAP LVRLYEQMPEPKYVIAMGACTITGGMFS DS
Sbjct: 76 FGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSP 135
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
+ VRGVDKLIPVDVYLPGCPP+PE+I+DA+ KLRKKI+ + ++++ ++ +R ++T
Sbjct: 136 TAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKIANDSMQERS---LIRQTHRFYST 192
Query: 181 NHKFYVERSTHTGNY--DQVLFHQPPSTSE 208
H TG Y + F+ P +E
Sbjct: 193 THNLKPVAEILTGKYMQSETRFNPPKELTE 222
>sp|Q44240|NUKC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
pir||S74216 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK - Anabaena
sp. (PCC 7120)
gb|AAC44353.1| (U31208) NADH dehydrogenase type 1 subunit [Anabaena sp.]
Length = 245
Score = 268 bits (679), Expect = 3e-71
Identities = 129/210 (61%), Positives = 165/210 (78%), Gaps = 5/210 (2%)
Query: 1 MNSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
+N IE P + + +VI TT++DL NW+RLSSLWPLL+GT+CCFIEFA+LIGSRFDFDR
Sbjct: 16 INPIERPTVTQDLSENVILTTVDDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDR 75
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
+GL+PRSSPRQADLI+TAGT+TMKMAP +VRLYE+MPEPKYVIAMGACTITGGMFS +S
Sbjct: 76 FGLIPRSSPRQADLIITAGTITMKMAPQMVRLYEKMPEPKYVIAMGACTITGGMFSVESP 135
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTT 180
+ VRGVDKLIPVDVYLPGCPP+PE+I+DA+ KLRKKI+ + ++++ ++ +R ++T
Sbjct: 136 TAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKIANDSMQERS---LIRQTHRFYST 192
Query: 181 NHKFYVERSTHTGNY--DQVLFHQPPSTSE 208
H TG Y + F+ P +E
Sbjct: 193 THNLKPVAEILTGKYMQSETRFNPPKELTE 222
>sp|P19050|NUKC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K HOMOLOG
pir||S04437 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK -
Synechocystis sp. (strain PCC 6803)
emb|CAA35485.1| (X17439) PSII-G protein (AA 1 - 248) [Synechocystis PCC6803]
dbj|BAA18284.1| (D90913) NADH-ubiquinone oxidoreductase subunit PsbG [Synechocystis
sp.]
Length = 248
Score = 268 bits (677), Expect = 6e-71
Identities = 127/189 (67%), Positives = 158/189 (83%), Gaps = 3/189 (1%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68
+ + +VI TT++DL NW++LSSLWPLLYGT+CCFIEFA+LIGSRFDFDR+GLVPRSS
Sbjct: 28 VTQDLSENVILTTVDDLYNWAKLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSS 87
Query: 69 PRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 128
PRQADLI+TAGT+TMKMAP+LVRLYE+MPEPKYVIAMGACTITGGMFS+DS + VRGVDK
Sbjct: 88 PRQADLIITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDK 147
Query: 129 LIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQRENRCFTTNHKFYVER 188
LIPVDVY+PGCPP+PE+I DAI KLRKK++ E +++ +Q+ +R ++T+H+ V
Sbjct: 148 LIPVDVYIPGCPPRPEAIFDAIIKLRKKVANESIQERA---ITQQTHRYYSTSHQMKVVA 204
Query: 189 STHTGNYDQ 197
G Y Q
Sbjct: 205 PILDGKYLQ 213
>sp|P17062|NUJC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K HOMOLOG 2
pir||F2YBG2 hypothetical ndhK homolog - Synechocystis sp. (strain PCC 6803)
emb|CAA35236.1| (X17359) put. psbG2 product (AA 1-219) [Synechocystis PCC6803]
Length = 219
Score = 237 bits (598), Expect = 1e-61
Identities = 104/172 (60%), Positives = 140/172 (80%)
Query: 2 NSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 61
N I+ P + + +VI T L+D+ NW+RLS+L+P+++GT+CCF+EF + G RFD +R+
Sbjct: 12 NPIQAPQVTKELSENVILTCLDDIYNWARLSTLYPMMFGTACCFMEFMAAFGPRFDLERF 71
Query: 62 GLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYS 121
G +PR++PRQADL++TAGT+TMK AP+LV+LYEQ+PEPKYVIAMGACTIT GMFS DS +
Sbjct: 72 GSIPRATPRQADLMITAGTITMKYAPALVQLYEQIPEPKYVIAMGACTITAGMFSADSPT 131
Query: 122 TVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQR 173
VRGVDKLIPVDVY+PGCPP+PE+++D I KLRKK++ E +D T L + R
Sbjct: 132 AVRGVDKLIPVDVYIPGCPPRPEAVIDGIIKLRKKVAGESRQDYTEDLQTHR 183
>pir||C71838 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Helicobacter pylori (strain J99)
gb|AAD06768.1| (AE001545) NADH oxidoreductase I [Helicobacter pylori J99]
Length = 159
Score = 176 bits (443), Expect = 2e-43
Identities = 82/146 (56%), Positives = 112/146 (76%), Gaps = 2/146 (1%)
Query: 14 QNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 73
Q VI +TL+ L NW R +SLWPL YG +CC IE + GSRFDFDR+G + R+SPRQ+D
Sbjct: 3 QAPVILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSD 62
Query: 74 LILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 133
+++ AGT+T K A + RLY+QMPEPK+VI+MG+C TGGMF+T Y+TV+G D+++PVD
Sbjct: 63 VMIIAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFNT--YATVQGADRVVPVD 120
Query: 134 VYLPGCPPKPESILDAITKLRKKISR 159
+YLPGC P+PE++ A+ L+ KI R
Sbjct: 121 IYLPGCAPRPETLQYALMVLQDKIRR 146
>pir||E64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Helicobacter pylori (strain 26695)
gb|AAD08307.1| (AE000631) NADH-ubiquinone oxidoreductase, NQO6 subunit (NQO6)
[Helicobacter pylori 26695]
Length = 159
Score = 176 bits (442), Expect = 2e-43
Identities = 81/146 (55%), Positives = 112/146 (76%), Gaps = 2/146 (1%)
Query: 14 QNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQAD 73
Q V+ +TL+ L NW R +SLWPL YG +CC IE + GSRFDFDR+G + R+SPRQ+D
Sbjct: 3 QAPVVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSD 62
Query: 74 LILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD 133
+++ AGT+T K A + RLY+QMPEPK+VI+MG+C TGGMF+T Y+TV+G D+++PVD
Sbjct: 63 VMIIAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFNT--YATVQGADRVVPVD 120
Query: 134 VYLPGCPPKPESILDAITKLRKKISR 159
+YLPGC P+PE++ A+ L+ KI R
Sbjct: 121 IYLPGCAPRPETLQYALMVLQDKIRR 146
>dbj|BAB22592.1| (AK003132) putative [Mus musculus]
Length = 224
Score = 173 bits (435), Expect = 1e-42
Identities = 75/143 (52%), Positives = 110/143 (76%), Gaps = 1/143 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ T L+DL NW+R SSLWP+ +G +CC +E + R+D DR+G+V R+SPRQAD+++
Sbjct: 74 VVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIV 133
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGT+T KMAP+L ++Y+QMPEP+YV++MG+C GG + SYS VRG D+++PVD+Y+P
Sbjct: 134 AGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 192
Query: 138 GCPPKPESILDAITKLRKKISRE 160
GCPP E++L I +L++KI RE
Sbjct: 193 GCPPTAEALLYGILQLQRKIKRE 215
>sp|P42026|NUKM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) (PSST SUBUNIT)
pir||S22371 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST - bovine
emb|CAA46154.1| (X65020) PSST subunit of the NADH: ubiquinone oxidoreductase
complex [Bos taurus]
Length = 216
Score = 172 bits (432), Expect = 3e-42
Identities = 74/149 (49%), Positives = 112/149 (74%), Gaps = 1/149 (0%)
Query: 12 TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71
+++ + L+DL NW+R SSLWP+ +G +CC +E + R+D DR+G+V R+SPRQ
Sbjct: 60 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 119
Query: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131
+D+++ AGT+T KMAP+L ++Y+QMPEP+YV++MG+C GG + SYS VRG D+++P
Sbjct: 120 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY-SYSVVRGCDRIVP 178
Query: 132 VDVYLPGCPPKPESILDAITKLRKKISRE 160
VD+Y+PGCPP E++L I +L+KKI RE
Sbjct: 179 VDIYVPGCPPTAEALLYGILQLQKKIKRE 207
>gb|AAH01715.1|AAH01715 (BC001715) Similar to CG9172 gene product [Homo sapiens]
Length = 213
Score = 171 bits (430), Expect = 5e-42
Identities = 73/149 (48%), Positives = 112/149 (74%), Gaps = 1/149 (0%)
Query: 12 TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71
+++ + L+DL NW+R SSLWP+ +G +CC +E + R+D DR+G+V R+SPRQ
Sbjct: 57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 116
Query: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131
+D+++ AGT+T KMAP+L ++Y+QMPEP+YV++MG+C GG + SYS VRG D+++P
Sbjct: 117 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY-SYSVVRGCDRIVP 175
Query: 132 VDVYLPGCPPKPESILDAITKLRKKISRE 160
VD+Y+PGCPP E++L I +L++KI RE
Sbjct: 176 VDIYIPGCPPTAEALLYGILQLQRKIKRE 204
>sp|O75251|NUKM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) (PSST SUBUNIT)
Length = 213
Score = 171 bits (430), Expect = 5e-42
Identities = 73/149 (48%), Positives = 112/149 (74%), Gaps = 1/149 (0%)
Query: 12 TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71
+++ + L+DL NW+R SSLWP+ +G +CC +E + R+D DR+G+V R+SPRQ
Sbjct: 57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 116
Query: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131
+D+++ AGT+T KMAP+L ++Y+QMPEP+YV++MG+C GG + SYS VRG D+++P
Sbjct: 117 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY-SYSVVRGCDRIVP 175
Query: 132 VDVYLPGCPPKPESILDAITKLRKKISRE 160
VD+Y+PGCPP E++L I +L++KI RE
Sbjct: 176 VDIYIPGCPPTAEALLYGILQLQRKIKRE 204
>gb|AAC27669.1| (AC005329) NUKM_HUMAN, partial CDS; COMPLE; CI-20KD; PSST SUBUNIT
[Homo sapiens]
Length = 158
Score = 171 bits (430), Expect = 5e-42
Identities = 73/149 (48%), Positives = 112/149 (74%), Gaps = 1/149 (0%)
Query: 12 TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71
+++ + L+DL NW+R SSLWP+ +G +CC +E + R+D DR+G+V R+SPRQ
Sbjct: 2 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 61
Query: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131
+D+++ AGT+T KMAP+L ++Y+QMPEP+YV++MG+C GG + SYS VRG D+++P
Sbjct: 62 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHY-SYSVVRGCDRIVP 120
Query: 132 VDVYLPGCPPKPESILDAITKLRKKISRE 160
VD+Y+PGCPP E++L I +L++KI RE
Sbjct: 121 VDIYIPGCPPTAEALLYGILQLQRKIKRE 149
>gb|AAF48552.1| (AE003500) CG9172 gene product [Drosophila melanogaster]
Length = 221
Score = 169 bits (425), Expect = 2e-41
Identities = 77/151 (50%), Positives = 111/151 (72%), Gaps = 4/151 (2%)
Query: 12 TTQNSVISTTL---NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68
T Q+SV +L +DL NW R S+WPL +G +CC +E + R+D DRYG+V R+S
Sbjct: 62 TKQSSVAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 121
Query: 69 PRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 128
PRQAD+I+ AGT+T KMAP+L ++Y+QMPEP++VI+MG+C GG + SYS VRG D+
Sbjct: 122 PRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYSVVRGCDR 180
Query: 129 LIPVDVYLPGCPPKPESILDAITKLRKKISR 159
+IPVD+Y+PGCPP E+++ + +L+KK+ R
Sbjct: 181 IIPVDIYVPGCPPTAEALMYGVLQLQKKVKR 211
>gi|11466592 NADH dehydrogenase subunit 10 [Rhodomonas salina]
gb|AAG17753.1|AF288090_29 (AF288090) NADH dehydrogenase subunit 10 [Rhodomonas salina]
Length = 158
Score = 168 bits (422), Expect = 5e-41
Identities = 73/142 (51%), Positives = 109/142 (76%), Gaps = 1/142 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + ++DL NW+R SLWP+ +G +CC +E SR+DFDR+G++ R+SPRQ+D+++
Sbjct: 8 VISKIDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQSDIMIV 67
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGT+T KMAP+L ++Y+QMPEP++VI+MG+C GG + SYS VRG DK++PVDV++P
Sbjct: 68 AGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHF-SYSVVRGCDKIVPVDVFVP 126
Query: 138 GCPPKPESILDAITKLRKKISR 159
GCPP E++L I +L+KKI R
Sbjct: 127 GCPPTAEALLYGILQLQKKIKR 148
>gb|AAF56901.1| (AE003770) CG2014 gene product [Drosophila melanogaster]
Length = 212
Score = 168 bits (420), Expect = 8e-41
Identities = 72/138 (52%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
Query: 22 LNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV 81
L+DL NW R SLWPL +G +CC +E + R+D DRYG+V R+SPRQAD+++ AGT+
Sbjct: 66 LDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAGTL 125
Query: 82 TMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPP 141
T KMAP+ ++Y+QMPEP++VI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP
Sbjct: 126 TNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPP 184
Query: 142 KPESILDAITKLRKKISR 159
E+++ I +L+KK+ R
Sbjct: 185 TAEALMYGILQLQKKVKR 202
>pir||H81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B Cj1578c
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB73566.1| (AL139079) NADH dehydrogenase I chain B [Campylobacter jejuni]
Length = 167
Score = 164 bits (412), Expect = 7e-40
Identities = 76/144 (52%), Positives = 108/144 (74%), Gaps = 2/144 (1%)
Query: 17 VISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIL 76
V+ T+++ L W R +SLW L YG +CC IE + GSR+DFDR+G + R+SPR +++++
Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73
Query: 77 TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYL 136
AGT+ K A RLY+QMP+PK+VI+MG+C TGGMF+T YSTV+GVD++IPVD+Y+
Sbjct: 74 IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFNT--YSTVQGVDRIIPVDIYV 131
Query: 137 PGCPPKPESILDAITKLRKKISRE 160
PGC P+PES A+ L+KKI +E
Sbjct: 132 PGCAPRPESFQFALMILQKKIRKE 155
>sp|Q43844|NUKM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD)
pir||T07603 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) 22K chain - potato
emb|CAA65451.1| (X96671) NADH-ubiquinone oxidoreductase [Solanum tuberosum]
Length = 213
Score = 164 bits (412), Expect = 7e-40
Identities = 69/142 (48%), Positives = 109/142 (76%), Gaps = 1/142 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + ++DL NW+R S+WP+ +G +CC +E +R+DFDR+G++ R SPRQ+D+++
Sbjct: 63 VISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIV 122
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGT+T KMAP+L ++Y+QMPEP++VI+MG+C GG + SY+ VRG D+++PVD+Y+P
Sbjct: 123 AGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYAVVRGCDRIVPVDIYVP 181
Query: 138 GCPPKPESILDAITKLRKKISR 159
GCPP E++L I +L+KKI+R
Sbjct: 182 GCPPTAEALLYGILQLQKKINR 203
>emb|CAC08301.1| (AL392148) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 232
Score = 164 bits (411), Expect = 9e-40
Identities = 78/135 (57%), Positives = 103/135 (75%), Gaps = 2/135 (1%)
Query: 27 NWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS-SPRQADLILTAGTVTMKM 85
NW R SLW +G +CC IEF + +R DF R G++P + PRQADL++ +GTVT KM
Sbjct: 36 NWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKM 95
Query: 86 APSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPES 145
AP++ RLYEQMPEPKYVI+ GAC+ GG + DSYS +GVD++IPVDVY+PGCPP+PE+
Sbjct: 96 APAVKRLYEQMPEPKYVISFGACSNCGGPY-WDSYSVTKGVDQIIPVDVYVPGCPPRPEA 154
Query: 146 ILDAITKLRKKISRE 160
+L I KL++KI+RE
Sbjct: 155 LLQGILKLQEKIARE 169
>sp|O67334|NUOB_AQUAE NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B)
pir||C70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoB - Aquifex
aeolicus
gb|AAC07297.1| (AE000734) NADH dehydrogenase I chain B [Aquifex aeolicus]
Length = 179
Score = 164 bits (410), Expect = 1e-39
Identities = 72/146 (49%), Positives = 104/146 (70%), Gaps = 2/146 (1%)
Query: 15 NSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 74
N ++TT+ +L W R +SLWP+ G +CC IE SRFD DR G++ R+SPRQAD+
Sbjct: 7 NGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQADV 66
Query: 75 ILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDV 134
++ AGTV K+AP L +++QMP+PK+ I+MG C GG F T YST++GVD++IPVDV
Sbjct: 67 LIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFPT--YSTLQGVDRIIPVDV 124
Query: 135 YLPGCPPKPESILDAITKLRKKISRE 160
Y+PGCPP P+ ++ I +L++KI +
Sbjct: 125 YIPGCPPTPQGLIYGILQLQRKIKEQ 150
>pir||S37059 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B - Escherichia
coli
emb|CAA48361.1| (X68301) NADH dehydrogenase I, subunit nuoB [Escherichia coli]
Length = 220
Score = 164 bits (410), Expect = 1e-39
Identities = 77/153 (50%), Positives = 108/153 (70%), Gaps = 3/153 (1%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRS 67
+++ +V LND+ NW R +S+WP +G SCC++E +L + D R+G V R+
Sbjct: 29 LEQEVNKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTLFTAVHDVARFGAEVLRA 88
Query: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
SPRQADL++ AGT KMAP + RLY+QM EPK+VI+MGAC +GGM+ D YS V+GVD
Sbjct: 89 SPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY--DIYSVVQGVD 146
Query: 128 KLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
K IPVDVY+PGCPP+PE+ + A+ L++ I +E
Sbjct: 147 KFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 179
>sp|P56897|NUB2_RHIME NADH DEHYDROGENASE I CHAIN B 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN B 2)
emb|CAB51630.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 167
Score = 163 bits (408), Expect = 2e-39
Identities = 72/151 (47%), Positives = 112/151 (73%), Gaps = 2/151 (1%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68
++ ++SV+ TT + + +WSR S+LWP +G +CC IE S +R+D DR+G+V R S
Sbjct: 4 VNDAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPS 63
Query: 69 PRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 128
PRQ+D+++ AGTVT K AP + RLY+QMPEP++VIAMG C I+GG+++T Y+ V+G +
Sbjct: 64 PRQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYNT--YAVVQGSET 121
Query: 129 LIPVDVYLPGCPPKPESILDAITKLRKKISR 159
+PVDV++PGCPP+PE+++ L++KI +
Sbjct: 122 FVPVDVHVPGCPPRPEALMHGFLLLQEKIKK 152
>pir||D82821 NADH-ubiquinone oxidoreductase, NQO6 subunit XF0306 [imported] -
Xylella fastidiosa (strain 9a5c)
gb|AAF83117.1|AE003884_2 (AE003884) NADH-ubiquinone oxidoreductase, NQO6 subunit [Xylella
fastidiosa]
Length = 191
Score = 162 bits (406), Expect = 3e-39
Identities = 74/155 (47%), Positives = 111/155 (70%), Gaps = 5/155 (3%)
Query: 5 EFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV 64
E PL+ Q ++T+++ L NW+R S+WP+ +G +CC +E +R D DRYG+V
Sbjct: 36 ESPLL----QKGYVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIV 91
Query: 65 PRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVR 124
R SPRQ+D+++ AGT+ KMAP+L ++Y+QMP+PK+VI+MG+C GG + SYS VR
Sbjct: 92 FRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVR 150
Query: 125 GVDKLIPVDVYLPGCPPKPESILDAITKLRKKISR 159
G D+++PVDVY+PGCPP E+++ I +L+KKI R
Sbjct: 151 GCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 185
>sp|Q94360|NUKM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR
(COMPLEX I-20KD) (CI-20KD)
pir||T26329 hypothetical protein W10D5.2 - Caenorhabditis elegans
emb|CAB02132.1| (Z79758) Similarity to Bovine NADH-ubiquinone oxidoreductase 20 KD
subunit (SW:NUKM_BOVIN), contains similarity to Pfam
domain: PF01058 (NADH ubiquinone oxidoreductase, 20 Kd
subunit), Score=224.4, E-value=5.4e-64, N=1~cDNA EST
yk98a6.3 comes from this>
Length = 199
Score = 162 bits (406), Expect = 3e-39
Identities = 74/154 (48%), Positives = 109/154 (70%), Gaps = 1/154 (0%)
Query: 7 PLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
P ++ +++ L+D+ N ++ S+WPL +G +CC +E R+D DRYG+V R
Sbjct: 38 PFLNPSSKAEYALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFR 97
Query: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
+SPRQADLI AGTVT KMAP+L R+Y+QMPE K+VI+MG+C GG + +YS +RG
Sbjct: 98 ASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHY-AYSVLRGC 156
Query: 127 DKLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
D++IPVD+Y+PGCPP E++L + +L+KKI R+
Sbjct: 157 DRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRK 190
>sp|Q42577|NUKM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD)
pir||S52286 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST precursor -
Arabidopsis thaliana
emb|CAA58887.1| (X84078) NADH dehydrogenase [Arabidopsis thaliana]
emb|CAB87695.1| (AL163814) NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana]
Length = 218
Score = 162 bits (406), Expect = 3e-39
Identities = 68/142 (47%), Positives = 107/142 (74%), Gaps = 1/142 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + ++DL NW+R S+WP+ +G +CC +E +R+D DR+G++ R SPRQ+D ++
Sbjct: 68 VISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIV 127
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGT+T KMAP+L ++Y+QMPEP++VI+MG+C GG + SYS VRG D+++PVD+Y+P
Sbjct: 128 AGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 186
Query: 138 GCPPKPESILDAITKLRKKISR 159
GCPP E++L + +L+KKI+R
Sbjct: 187 GCPPTAEALLYGLLQLQKKINR 208
>gb|AAF91434.1| (AF281035) NADH-ubiquinone oxidoreductase subunit PSST [Lupinus
luteus]
Length = 192
Score = 162 bits (405), Expect = 4e-39
Identities = 68/142 (47%), Positives = 107/142 (74%), Gaps = 1/142 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + ++DL NW+R S+WP+ +G +CC +E +R+D DR+G++ R SPRQ+D ++
Sbjct: 42 VISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIV 101
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGT+T KMAP+L ++Y+QMPEP++VI+MG+C GG + SYS VRG D+++PVD+Y+P
Sbjct: 102 AGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 160
Query: 138 GCPPKPESILDAITKLRKKISR 159
GCPP E++L + +L+KKI+R
Sbjct: 161 GCPPTAEALLYGLLQLQKKINR 182
>pir||T44818 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST precursor
[imported] - yellow lupine
gb|AAF01037.1| (AF185271) NADH ubiquinone oxidoreductase PSST subunit [Lupinus
luteus]
Length = 213
Score = 162 bits (405), Expect = 4e-39
Identities = 68/142 (47%), Positives = 107/142 (74%), Gaps = 1/142 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + ++DL NW+R S+WP+ +G +CC +E +R+D DR+G++ R SPRQ+D ++
Sbjct: 63 VISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIV 122
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGT+T KMAP+L ++Y+QMPEP++VI+MG+C GG + SYS VRG D+++PVD+Y+P
Sbjct: 123 AGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 181
Query: 138 GCPPKPESILDAITKLRKKISR 159
GCPP E++L + +L+KKI+R
Sbjct: 182 GCPPTAEALLYGLLQLQKKINR 203
>gi|11466261 NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
gb|AAD41921.1|AF160864_9 (AF160864) NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
Length = 162
Score = 162 bits (405), Expect = 4e-39
Identities = 72/148 (48%), Positives = 108/148 (72%), Gaps = 1/148 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
I T +N + +W+R S WPL +G +CC +E SR+DFDR+G++ R++PRQADLIL
Sbjct: 6 IVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLILV 65
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGT+T KMAP L RLYEQ +PK+V++MG+C GG + SYS VRG +++IPVD+Y+P
Sbjct: 66 AGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHY-SYSVVRGCNRIIPVDIYVP 124
Query: 138 GCPPKPESILDAITKLRKKISREIHEDQ 165
GCPP E+++ + +L+K + R+++E +
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQVNEGE 152
>sp|P42027|NUKM_BRAOL NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD)
pir||S48826 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST precursor -
wild cabbage
emb|CAA57725.1| (X82274) PSST subunit of NADH: ubiquinone oxidoreductase [Brassica
oleracea]
Length = 215
Score = 162 bits (405), Expect = 4e-39
Identities = 68/142 (47%), Positives = 107/142 (74%), Gaps = 1/142 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + ++DL NW+R S+WP+ +G +CC +E +R+D DR+G++ R SPRQ+D ++
Sbjct: 65 VISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIV 124
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGT+T KMAP+L ++Y+QMPEP++VI+MG+C GG + SYS VRG D+++PVD+Y+P
Sbjct: 125 AGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVP 183
Query: 138 GCPPKPESILDAITKLRKKISR 159
GCPP E++L + +L+KKI+R
Sbjct: 184 GCPPTAEALLYGLLQLQKKINR 205
>gb|AAG57416.1|AE005461_1 (AE005461) NADH dehydrogenase I chain B [Escherichia coli O157:H7]
Length = 220
Score = 161 bits (404), Expect = 6e-39
Identities = 76/153 (49%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRS 67
+++ +V LND+ NW R +S+WP +G SCC++E + + D R+G V R+
Sbjct: 29 LEQEVNKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAXVLRA 88
Query: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
SPRQADL++ AGT KMAP + RLY+QM EPK+VI+MGAC +GGM+ D YS V+GVD
Sbjct: 89 SPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY--DIYSVVQGVD 146
Query: 128 KLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
K IPVDVY+PGCPP+PE+ + A+ L++ I +E
Sbjct: 147 KFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 179
>gb|AAF03193.1|AF110138_25 (AF110138) NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
Length = 158
Score = 161 bits (404), Expect = 6e-39
Identities = 68/140 (48%), Positives = 105/140 (74%), Gaps = 1/140 (0%)
Query: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79
T ++ L NW+R S+WP+ +G +CC +E SR+D DR+G++ R SPRQ+D+++ AG
Sbjct: 10 TGIDSLLNWARKGSMWPMTFGLACCAVEMMHCGASRYDLDRFGIIFRPSPRQSDVMIVAG 69
Query: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139
T+T KMAP+L ++Y+QMPEP++V++MG+C GG + SYS VRG D+++PVD+Y+PGC
Sbjct: 70 TLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 128
Query: 140 PPKPESILDAITKLRKKISR 159
PP E++L + +L+KKI R
Sbjct: 129 PPTAEALLYGLLQLQKKIQR 148
>gi|11466535 NADH dehydrogenase, subunit 10 [Reclinomonas americana]
sp|O21272|NUKM_RECAM NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 10)
pir||S78166 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 10 -
Reclinomonas americana (ATCC 50394) mitochondrion
gb|AAD11899.1| (AF007261) NADH dehydrogenase, subunit 10 [Reclinomonas americana]
Length = 182
Score = 161 bits (404), Expect = 6e-39
Identities = 69/152 (45%), Positives = 110/152 (71%), Gaps = 1/152 (0%)
Query: 8 LIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67
L ++ + I + +++L NW+R SLWP+ +G +CC +E SR+D DR+G++ R
Sbjct: 22 LNNKQNKTEFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGIIFRP 81
Query: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
SPRQ+D+++ AGT+T KMAP+L ++Y+QM EP++V++MG+C GG + SYS VRG D
Sbjct: 82 SPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHY-SYSVVRGCD 140
Query: 128 KLIPVDVYLPGCPPKPESILDAITKLRKKISR 159
+++PVD+Y+PGCPP E++L + +L+KKI R
Sbjct: 141 RIVPVDIYVPGCPPTAEALLYGLLQLQKKIKR 172
>sp|P33598|NUOB_ECOLI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
2) (NUO2)
pir||E65000 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B -
Escherichia coli
gb|AAC75347.1| (AE000318) NADH dehydrogenase I chain B [Escherichia coli K12]
Length = 220
Score = 161 bits (404), Expect = 6e-39
Identities = 76/153 (49%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRS 67
+++ +V LND+ NW R +S+WP +G SCC++E + + D R+G V R+
Sbjct: 29 LEQEVNKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRA 88
Query: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
SPRQADL++ AGT KMAP + RLY+QM EPK+VI+MGAC +GGM+ D YS V+GVD
Sbjct: 89 SPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY--DIYSVVQGVD 146
Query: 128 KLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
K IPVDVY+PGCPP+PE+ + A+ L++ I +E
Sbjct: 147 KFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 179
>emb|CAB65525.1| (AJ250340) subunit NUKM of protein NADH:Ubiquinone Oxidoreductase
(Complex I) [Yarrowia lipolytica]
Length = 210
Score = 160 bits (401), Expect = 1e-38
Identities = 71/156 (45%), Positives = 112/156 (71%), Gaps = 4/156 (2%)
Query: 5 EFPLIDRTTQNSVIS---TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 61
+FPL + NS + TTL+ ++NW+R S WP+ +G +CC +E + R+D DR
Sbjct: 44 DFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEMMHVSAPRYDQDRL 103
Query: 62 GLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYS 121
G++ R+SPRQ+D+++ AGT+T KMAP L ++Y+QMPEP++VI+MG+C GG + SYS
Sbjct: 104 GIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGYYHF-SYS 162
Query: 122 TVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKI 157
VRG D+++PVDVY+PGCPP E+++ + +L++K+
Sbjct: 163 VVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKM 198
>emb|CAC12098.1| (AL445066) probable NADH dehydrogenase, chain B [Thermoplasma
acidophilum]
Length = 149
Score = 160 bits (400), Expect = 2e-38
Identities = 74/145 (51%), Positives = 104/145 (71%), Gaps = 2/145 (1%)
Query: 17 VISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLI 75
V++TTL+ W+R +SLWPL +G +CC IE ++ S D R+G + R+SPRQ+DL+
Sbjct: 3 VVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDLM 62
Query: 76 LTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVY 135
+ +GTVT KMAP + R+Y++MP PKYVIA G C I GG ++ YS V GVD+++PVDVY
Sbjct: 63 IVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYN-QGYSVVLGVDRVVPVDVY 121
Query: 136 LPGCPPKPESILDAITKLRKKISRE 160
+PGCPP PE++ + I L+KKI E
Sbjct: 122 IPGCPPTPEALTNGIILLQKKIRGE 146
>sp|Q9ZDH2|NUOB_RICPR NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B)
pir||F71692 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B RP356 -
Rickettsia prowazekii
emb|CAA14816.1| (AJ235271) NADH DEHYDROGENASE I CHAIN B (nuoB) [Rickettsia
prowazekii]
Length = 174
Score = 160 bits (400), Expect = 2e-38
Identities = 68/147 (46%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Query: 13 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72
T + + ++++ +W+R +SLWP+ +G +CC +E SR+D DR+G++ R SPRQ+
Sbjct: 17 TNRGFLLSKVDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQS 76
Query: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132
DL++ AGT+T KMAP+L ++Y+QM EPK+V++MG+C GG + SYS VRG D+++PV
Sbjct: 77 DLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHF-SYSVVRGCDRIVPV 135
Query: 133 DVYLPGCPPKPESILDAITKLRKKISR 159
DVY+PGCPP E+++ + +L+KKI R
Sbjct: 136 DVYVPGCPPTAEALIYGLMQLQKKIKR 162
>gb|AAF91429.1|AF279902_1 (AF279902) NADH-ubiquinone oxidoreductase subunit PSST [Lupinus
luteus]
Length = 210
Score = 159 bits (399), Expect = 2e-38
Identities = 67/142 (47%), Positives = 106/142 (74%), Gaps = 1/142 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + ++DL NW+R S+WP+ +G +CC +E +R+D DR+G++ R SPRQ+D ++
Sbjct: 60 VISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIV 119
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGT+T KMAP+L ++Y+QMPEP++VI+MG+C GG + SY VRG D+++PVD+Y+P
Sbjct: 120 AGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYYVVRGCDRIVPVDIYVP 178
Query: 138 GCPPKPESILDAITKLRKKISR 159
GCPP E++L + +L+KKI+R
Sbjct: 179 GCPPTAEALLYGLLQLQKKINR 200
>sp|P57253|NUOB_BUCAI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B)
dbj|BAB12873.1| (AP001118) NADH dehydrogenase I chain B [Buchnera sp. APS]
Length = 224
Score = 159 bits (397), Expect = 4e-38
Identities = 80/164 (48%), Positives = 112/164 (67%), Gaps = 6/164 (3%)
Query: 1 MNSIEFPLIDRTTQN---SVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFD 57
+ S+ PL + +N I+ L+ L NW R +SLWP +G SCC++E S S D
Sbjct: 22 IESVSDPLEEYLKKNIFMGKITQLLHKLVNWGRKNSLWPYNFGLSCCYVEMVSAFTSVHD 81
Query: 58 FDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFS 116
R+G V R+SPRQAD+++ AGT +KMAP + RLY+QM EPK+VI+MGAC +GGM+
Sbjct: 82 VARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPKWVISMGACANSGGMY- 140
Query: 117 TDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
D YS V+GVDK +PVD+Y+PGCPP+PE+ + A+ L+K I+ E
Sbjct: 141 -DIYSVVQGVDKFLPVDIYIPGCPPRPEAYMQALILLQKLINEE 183
>gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit B [Pseudomonas fluorescens]
Length = 224
Score = 159 bits (397), Expect = 4e-38
Identities = 84/192 (43%), Positives = 114/192 (58%), Gaps = 19/192 (9%)
Query: 7 PLIDRTTQN---SVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL 63
PL D+ +N + LN NW R +SLWP +G SCC++E + + D R+G
Sbjct: 28 PLEDQVHKNIFMGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGA 87
Query: 64 -VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYST 122
V R+SPRQAD ++ AGT +KMAP + RLYEQM EPK+VI+MG+C +GGM+ D YS
Sbjct: 88 EVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMY--DIYSV 145
Query: 123 VRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISRE-------------IHEDQTSSL 169
V+GVDK +PVDVY+PGCPP+PE+ L + L++ I +E D S
Sbjct: 146 VQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERRPLSWVVGDQGVYRADMPSQK 205
Query: 170 SSQRENRCFTTN 181
+RE R TN
Sbjct: 206 EQRREQRIAVTN 217
>sp|O47950|NUKM_NEUCR PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 19.3 KDA SUBUNIT PRECURSOR
(COMPLEX I-19.3KD) (CI-19.3KD)
emb|CAA04802.1| (AJ001520) 19.3kD iron-sulfur subunit of mitochondrial complex I
[Neurospora crassa]
Length = 226
Score = 159 bits (397), Expect = 4e-38
Identities = 68/138 (49%), Positives = 106/138 (76%), Gaps = 1/138 (0%)
Query: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79
TTL+ + NW+R SSLWP+ +G +CC +E L R+D DR G++ R+SPRQ+D+++ AG
Sbjct: 78 TTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAG 137
Query: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139
T+T KMAP+L ++Y+QMP+P++VI+MG+C GG + SYS VRG D+++PVD+Y+PGC
Sbjct: 138 TLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 196
Query: 140 PPKPESILDAITKLRKKI 157
PP E+++ I +L++K+
Sbjct: 197 PPTSEALMYGIFQLQRKM 214
>gb|AAA79257.1| (M26930) photosystem II protein G [Paramecium aurelia]
Length = 156
Score = 158 bits (395), Expect = 7e-38
Identities = 69/146 (47%), Positives = 106/146 (72%), Gaps = 1/146 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + N+L +W+R S WPL +G +CC +E SR+DFDR+G++ R++PRQADLI+
Sbjct: 8 LKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLIIV 67
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGTVT KMAP+L RLY+Q +PK+V++MG+C GG + SY+ V+G DK+IPVD+++P
Sbjct: 68 AGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHY-SYAVVKGCDKIIPVDIFVP 126
Query: 138 GCPPKPESILDAITKLRKKISREIHE 163
GCPP E++ + +L+K + + I+E
Sbjct: 127 GCPPTAEALFFGVLQLQKTLMKTINE 152
>sp|O85274|NUOB_ERWCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
2) (NUO2)
gb|AAC38641.1| (AF057063) NADH dehydrogenase chain B [Pectobacterium carotovorum
subsp. carotovorum]
Length = 224
Score = 157 bits (394), Expect = 9e-38
Identities = 75/153 (49%), Positives = 104/153 (67%), Gaps = 3/153 (1%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRS 67
+ R+ + L+D NW R +SLWP +G SCC++E + + D R+G V R+
Sbjct: 33 VHRSVYMGKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRA 92
Query: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
SPRQAD ++ AGT KMAP + RLYEQM EPK+VI+MGAC +GGM+ D YS V+GVD
Sbjct: 93 SPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY--DIYSVVQGVD 150
Query: 128 KLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
K +PVDVY+PGCPP+PE+ + A+ L++ I +E
Sbjct: 151 KFLPVDVYIPGCPPRPEAYMQALLLLKESIGKE 183
>sp|O84970|NUOB_RHOCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B)
gb|AAC24986.1| (AF029365) NUOB [Rhodobacter capsulatus]
Length = 177
Score = 157 bits (393), Expect = 1e-37
Identities = 69/140 (49%), Positives = 102/140 (72%), Gaps = 1/140 (0%)
Query: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79
TT D+ NW+R SL + +G +CC +E R+D +RYG PR+SPRQ+D+++ AG
Sbjct: 33 TTAEDIINWARNGSLHWMTFGLACCAVEMMHTAMPRYDVERYGFAPRASPRQSDVMIVAG 92
Query: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139
T+T KMAP+L ++Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC
Sbjct: 93 TLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 151
Query: 140 PPKPESILDAITKLRKKISR 159
PP E+++ I +L++KI R
Sbjct: 152 PPSAEALMYGILQLQRKIRR 171
>pir||C83316 NADH dehydrogenase I chain B PA2638 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06026.1|AE004692_5 (AE004692) NADH dehydrogenase I chain B [Pseudomonas aeruginosa]
Length = 225
Score = 156 bits (391), Expect = 2e-37
Identities = 75/159 (47%), Positives = 106/159 (66%), Gaps = 7/159 (4%)
Query: 7 PLIDRTTQNSV----ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 62
PL++ ++ + LN NW R +SLWP +G SCC++E + + D R+G
Sbjct: 28 PLVEGQVHKNIFMGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFG 87
Query: 63 L-VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYS 121
V R+SPRQAD ++ AGT +KMAP + RLYEQM EPK+VI+MG+C +GGM+ D YS
Sbjct: 88 AEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCANSGGMY--DIYS 145
Query: 122 TVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
V+GVDK +PVDVY+PGCPP+PE+ L + L++ I +E
Sbjct: 146 VVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQE 184
>pir||T34623 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoB -
Streptomyces coelicolor
emb|CAB44530.1| (AL078618) nuo, NADH dehydrogenase subunit [Streptomyces
coelicolor]
Length = 184
Score = 156 bits (390), Expect = 3e-37
Identities = 72/150 (48%), Positives = 106/150 (70%), Gaps = 3/150 (2%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRS 67
++ + + TT+ + W R SS++P +G +CC IE + R+D R+G+ V R
Sbjct: 3 LEEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRG 62
Query: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
SPRQADL++ AG V+ KMAP L ++Y+QMP PK+VI+MG C +GGMF ++Y+ V+GVD
Sbjct: 63 SPRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMF--NNYAIVQGVD 120
Query: 128 KLIPVDVYLPGCPPKPESILDAITKLRKKI 157
++PVD+YLPGCPP+PE ++DAI KL +KI
Sbjct: 121 HVVPVDIYLPGCPPRPEMLMDAILKLHQKI 150
>gb|AAA03036.1| (M93015) NADH dehydrogenase [Paracoccus denitrificans]
Length = 174
Score = 156 bits (390), Expect = 3e-37
Identities = 69/140 (49%), Positives = 102/140 (72%), Gaps = 1/140 (0%)
Query: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79
TT D+ NW+R SL + +G +CC +E R+D +R+G PR+SPRQ+DL++ AG
Sbjct: 30 TTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAG 89
Query: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139
T+T KMAP+L ++Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC
Sbjct: 90 TLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 148
Query: 140 PPKPESILDAITKLRKKISR 159
PP E++L I +L+++I R
Sbjct: 149 PPTAEALLYGILQLQRRIRR 168
>sp|Q56218|NQO6_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NADH DEHYDROGENASE 1, CHAIN
6) (NDH-1, CHAIN 6)
pir||T11899 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 - Thermus
aquaticus thermophilus
gb|AAA97939.1| (U52917) NADH dehydrogenase I, subunit NQO6 [Thermus thermophilus]
Length = 181
Score = 155 bits (389), Expect = 3e-37
Identities = 71/162 (43%), Positives = 113/162 (68%), Gaps = 3/162 (1%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRS 67
+ + ++ TTL L W R +SLWP +G +CC IE + +R D R+G V R+
Sbjct: 11 VQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRA 70
Query: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
SPRQAD+++ AG ++ KMAP + R++EQMP+PK+VI+MGAC +GGMF ++Y+ V+ VD
Sbjct: 71 SPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMF--NNYAIVQNVD 128
Query: 128 KLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSL 169
++PVDVY+PGCPP+PE+++ A+ +L+KK+ + + ++ L
Sbjct: 129 SVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERGERL 170
>pir||C75388 NADH dehydrogenase I, B subunit - Deinococcus radiodurans (strain
R1)
gb|AAF11070.1|AE001994_6 (AE001994) NADH dehydrogenase I, B subunit [Deinococcus
radiodurans]
Length = 181
Score = 155 bits (388), Expect = 4e-37
Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 7/158 (4%)
Query: 8 LIDRTTQN----SVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL 63
LIDR Q V+ ++L L W R +SLWP +G +CC IE S +R D R+G
Sbjct: 6 LIDRDWQELESEGVLFSSLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDMSRFGS 65
Query: 64 -VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYST 122
V R+SPRQAD+++ AG ++ KMAP + R+Y+QMP+PK+VI+MGAC +GGMF ++Y+
Sbjct: 66 EVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMF--NNYAV 123
Query: 123 VRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
V+ VD ++PVD+++PGCPP+PE+++ A+ +L+KK+ E
Sbjct: 124 VQNVDSVVPVDIFVPGCPPRPEALIYAVMQLQKKVRGE 161
>sp|O68853|NUB1_RHIME NADH DEHYDROGENASE I CHAIN B 1 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN B 1)
emb|CAB51621.1| (AJ245398) nuoB1 [Sinorhizobium meliloti]
Length = 192
Score = 155 bits (388), Expect = 4e-37
Identities = 68/140 (48%), Positives = 103/140 (73%), Gaps = 1/140 (0%)
Query: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79
T+ ++L NW+R SL + +G +CC +E + R+D +R+G PR+SPRQ+D+++ AG
Sbjct: 48 TSTDELINWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAG 107
Query: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139
T+T KMAP+L ++Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC
Sbjct: 108 TLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRVVPVDIYVPGC 166
Query: 140 PPKPESILDAITKLRKKISR 159
PP E++L + L+KKI R
Sbjct: 167 PPTAEALLYGVLLLQKKIRR 186
>sp|P95180|NUOB_MYCTU NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B)
pir||C70647 probable nuoB protein - Mycobacterium tuberculosis (strain H37RV)
emb|CAB06270.1| (Z83867) nuoB [Mycobacterium tuberculosis]
Length = 184
Score = 154 bits (386), Expect = 7e-37
Identities = 71/152 (46%), Positives = 107/152 (69%), Gaps = 3/152 (1%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68
++ ++ +T+ ++ + R +SLWP +G +CC IE + G RFD R+G+ S+
Sbjct: 3 LEEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSA 62
Query: 69 -PRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
PRQADL++ AG V+ KMAP L ++Y+QM EPK+V+AMG C +GGMF ++Y+ V+GVD
Sbjct: 63 TPRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMF--NNYAIVQGVD 120
Query: 128 KLIPVDVYLPGCPPKPESILDAITKLRKKISR 159
++PVD+YLPGCPP+PE +L AI KL +KI +
Sbjct: 121 HVVPVDIYLPGCPPRPEMLLHAILKLHEKIQQ 152
>pir||H81221 NADH dehydrogenase I, B chain NMB0242 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40696.1| (AE002381) NADH dehydrogenase I, B subunit [Neisseria meningitidis
MC58]
Length = 160
Score = 154 bits (385), Expect = 1e-36
Identities = 68/151 (45%), Positives = 108/151 (71%), Gaps = 1/151 (0%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68
I+ + I+T+ + + N+ R SLWP+ +G +CC +E +R+D DR+G++ R S
Sbjct: 3 IEGVLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPS 62
Query: 69 PRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 128
PRQADL++ AGT+T KMAP+L R+Y+Q+ EP++V++MG+C GG + SYS VRG D+
Sbjct: 63 PRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHY-SYSVVRGADR 121
Query: 129 LIPVDVYLPGCPPKPESILDAITKLRKKISR 159
++PVDVY+PGCPP E+++ + +L++KI R
Sbjct: 122 VVPVDVYVPGCPPTAEALIYGLIQLQQKIKR 152
>sp|P29918|NQO6_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NADH DEHYDROGENASE 1, CHAIN
6) (NDH-1, CHAIN 6)
pir||E42573 psbG homolog protein - Paracoccus denitrificans
Length = 173
Score = 154 bits (385), Expect = 1e-36
Identities = 68/139 (48%), Positives = 101/139 (71%), Gaps = 1/139 (0%)
Query: 20 TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAG 79
TT D+ NW+R SL + +G +CC +E R+D +R+G PR+SPRQ+DL++ AG
Sbjct: 30 TTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAG 89
Query: 80 TVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGC 139
T+T KMAP+L ++Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGC
Sbjct: 90 TLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGC 148
Query: 140 PPKPESILDAITKLRKKIS 158
PP E++L I +L+++ S
Sbjct: 149 PPTAEALLYGILQLQRRAS 167
>gb|AAF65732.1|AF228525_2 (AF228525) F420H2 dehydrogenase subunit FpoB [Methanosarcina mazei]
Length = 184
Score = 152 bits (380), Expect = 4e-36
Identities = 69/157 (43%), Positives = 108/157 (67%), Gaps = 5/157 (3%)
Query: 5 EFPLIDRTTQNSVIS----TTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
E P + TT +++ + T D+ NW R +SLW + CC +E + + +D DR
Sbjct: 19 EVPGVITTTTSAIHNFLKKTKAQDIINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDTDR 78
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
+G++PR+SPR AD+++ +G VT K P+L RL++QMP PK+VIAMG C I+GG F +SY
Sbjct: 79 FGIIPRNSPRHADVMIISGYVTKKYLPALKRLWDQMPAPKWVIAMGDCAISGGPF-YESY 137
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKI 157
STV+ +D++ P+DVY+PGCPP+PE+++ +L++KI
Sbjct: 138 STVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQEKI 174
>gi|8928600 NADH dehydrogenase subunit 10 [Paramecium aurelia]
Length = 154
Score = 152 bits (379), Expect = 5e-36
Identities = 68/146 (46%), Positives = 103/146 (69%), Gaps = 1/146 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + N+L +W+R S WPL +G +CC +E SR+DFDR+G++ R++PRQADLI+
Sbjct: 6 LKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLIIV 65
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGTVT KMAP+L RLY+Q +PK+V++MG+C GG + SY+ V+G DK+IPVD+ P
Sbjct: 66 AGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHY-SYAVVKGCDKIIPVDMLCP 124
Query: 138 GCPPKPESILDAITKLRKKISREIHE 163
CPP E++ + +L+K + + I+E
Sbjct: 125 RCPPTAEALFFGVLQLQKTLMKTINE 150
>sp|P15602|NUKM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT
pir||F2PPG psbG protein - Paramecium tetraurelia mitochondrion
emb|CAA34045.1| (X15917) psbG protein (AA 1-156) [Paramecium aurelia]
Length = 156
Score = 152 bits (379), Expect = 5e-36
Identities = 68/146 (46%), Positives = 103/146 (69%), Gaps = 1/146 (0%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILT 77
+ + N+L +W+R S WPL +G +CC +E SR+DFDR+G++ R++PRQADLI+
Sbjct: 8 LKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLIIV 67
Query: 78 AGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLP 137
AGTVT KMAP+L RLY+Q +PK+V++MG+C GG + SY+ V+G DK+IPVD+ P
Sbjct: 68 AGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHY-SYAVVKGCDKIIPVDMLCP 126
Query: 138 GCPPKPESILDAITKLRKKISREIHE 163
CPP E++ + +L+K + + I+E
Sbjct: 127 RCPPTAEALFFGVLQLQKTLMKTINE 152
>pir||F81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B NMA0018
[imported] - Neisseria meningitidis (group A strain
Z2491)
emb|CAB83338.1| (AL162752) NADH dehydrogenase I chain B [Neisseria meningitidis
Z2491]
Length = 160
Score = 151 bits (377), Expect = 9e-36
Identities = 67/151 (44%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68
I+ + I+T+ + + N+ R SLWP+ +G +CC +E +R+D DR+G++ R S
Sbjct: 3 IEGVLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPS 62
Query: 69 PRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 128
PRQADL++ AGT+T KMA +L R+Y+Q+ EP++V++MG+C GG + SYS VRG D+
Sbjct: 63 PRQADLMIVAGTLTNKMASALRRVYDQLAEPRWVLSMGSCANGGGYYHY-SYSVVRGADR 121
Query: 129 LIPVDVYLPGCPPKPESILDAITKLRKKISR 159
++PVDVY+PGCPP E+++ + +L++KI R
Sbjct: 122 VVPVDVYVPGCPPTAEALIYGLIQLQQKIKR 152
>gb|AAC12755.1| (AF055637) NADH-ubiqionone oxidoreductase subunit NuoB
[Sinorhizobium meliloti]
Length = 165
Score = 150 bits (376), Expect = 1e-35
Identities = 69/141 (48%), Positives = 102/141 (71%), Gaps = 2/141 (1%)
Query: 20 TTLNDLSNWSRLSSL-WPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTA 78
T+ ++L NW+R SL W L +CC +E + R+D +R+G PR+SPRQ+D+++ A
Sbjct: 20 TSTDELINWARTGSLMWNELSVLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVA 79
Query: 79 GTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPG 138
GT+T KMAP+L ++Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PG
Sbjct: 80 GTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRVVPVDIYVPG 138
Query: 139 CPPKPESILDAITKLRKKISR 159
CPP E++L + L+KKI R
Sbjct: 139 CPPTAEALLYGVLLLQKKIRR 159
>sp|Q26783|NUKM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD)
gb|AAA30217.1| (L00585) NADH dehydrogenase (ubiquinone) [Trypanosoma brucei]
Length = 202
Score = 148 bits (369), Expect = 7e-35
Identities = 71/149 (47%), Positives = 100/149 (66%), Gaps = 3/149 (2%)
Query: 21 TLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80
TL+DL+ W S WPL +G +CC +E SR+D DR+G+VPR +PRQA++I+ +GT
Sbjct: 55 TLHDLTEWCLAYSPWPLTFGLACCAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGT 114
Query: 81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCP 140
VT KMAP L +Y QM PK+VI+MG+C GG + SY+ +RG ++ IPVD ++PGCP
Sbjct: 115 VTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHF-SYAVLRGCERAIPVDFWIPGCP 173
Query: 141 PKPESILDAITKLRKKISREIHEDQTSSL 169
P ES++ + L+KKI HE Q S+
Sbjct: 174 PSAESLVFCLHTLQKKI--RWHEIQKYSV 200
>gb|AAG19138.1| (AE005011) NADH dehydrogenase/oxidoreductase; NdhG1 [Halobacterium
sp. NRC-1]
Length = 235
Score = 141 bits (351), Expect = 1e-32
Identities = 62/142 (43%), Positives = 99/142 (69%), Gaps = 2/142 (1%)
Query: 18 ISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLIL 76
I T + NW R SS++ L +G +CC IE + D DR+ VPR+SPRQAD+++
Sbjct: 47 ILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMI 106
Query: 77 TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYL 136
GT+ K AP + R+Y+QMPEPK+V+ MG C+ +GG F + Y+ V+G +++IPVD+++
Sbjct: 107 VPGTIVSKFAPRMKRVYDQMPEPKFVVNMGNCSTSGGPFQ-EGYNVVKGAEEVIPVDIHI 165
Query: 137 PGCPPKPESILDAITKLRKKIS 158
PGCPP+PE+++ + KL+++I+
Sbjct: 166 PGCPPRPEALVYGVAKLQERIA 187
>emb|CAB57637.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
emb|CAC23080.1| (AL512964) ORF-c09_002 [Sulfolobus solfataricus]
Length = 170
Score = 137 bits (341), Expect = 1e-31
Identities = 64/136 (47%), Positives = 95/136 (69%), Gaps = 1/136 (0%)
Query: 22 LNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV 81
+ + +W SLWP + TSCC EF + +RFD +RYG++P SS RQ+++++ GT+
Sbjct: 28 IKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEGTL 87
Query: 82 TMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPP 141
+ KM + +Y+QMPEPKYVIA+GAC + GG+F +SY+TV D IPVD+Y+PGCP
Sbjct: 88 SRKMGRAARIVYDQMPEPKYVIALGACILEGGIF-WNSYNTVLPSDIGIPVDLYVPGCPI 146
Query: 142 KPESILDAITKLRKKI 157
+PE++ A+ L+KKI
Sbjct: 147 RPEAVARAVLMLQKKI 162
>pir||A75114 NADH dehydrogenase I chain B PAB0493 - Pyrococcus abyssi (strain
Orsay)
emb|CAB49626.1| (AJ248285) NADH dehydrogenase I, subunit B [Pyrococcus abyssi]
Length = 195
Score = 133 bits (331), Expect = 2e-30
Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 25 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 84
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
Query: 85 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 144
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
Query: 145 SILDAITKLRKKI 157
++LD I KL + I
Sbjct: 132 AVLDGIYKLMEMI 144
>pir||C72621 probable NADH dehydrogenase (ubiquinone) chain 10 APE1428 -
Aeropyrum pernix (strain K1)
dbj|BAA80425.1| (AP000061) 202aa long hypothetical NADH dehydrogenase (ubiquinone)
chain 10 [Aeropyrum pernix]
Length = 202
Score = 133 bits (331), Expect = 2e-30
Identities = 62/136 (45%), Positives = 94/136 (68%), Gaps = 2/136 (1%)
Query: 22 LNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV 81
L+ + +W+ SLWP+ TSCC EFA+ R D +++G +P PRQ +LI+ GTV
Sbjct: 34 LDKMVDWATSFSLWPVHLTTSCCSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGTV 93
Query: 82 TMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPP 141
T KMA ++ +EQMP PK+ IAMGAC + GG+F +SY+ V+ +++P+D+Y+PGCPP
Sbjct: 94 TKKMACAVRLTWEQMPHPKFAIAMGACALDGGLF-YNSYNIVKPW-QVLPIDIYIPGCPP 151
Query: 142 KPESILDAITKLRKKI 157
+PE + AI +L++KI
Sbjct: 152 RPEGVARAIVELQRKI 167
>pir||D72281 hypothetical protein TM1214 - Thermotoga maritima (strain MSB8)
gb|AAD36289.1|AE001778_10 (AE001778) NADH dehydrogenase, putative [Thermotoga maritima]
Length = 178
Score = 132 bits (330), Expect = 3e-30
Identities = 63/144 (43%), Positives = 93/144 (63%), Gaps = 7/144 (4%)
Query: 22 LNDLSNWSRLS------SLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI 75
+ + S W R++ S+W L Y T C +E + SRFD +R+G+ P ++PRQAD++
Sbjct: 1 MKERSIWERIADNLRSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADIL 60
Query: 76 LTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVY 135
L G + K ++ YEQMP+PKYV+ G+CTI GG++ DSY+TV +D IPVDVY
Sbjct: 61 LITGYLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIY-FDSYATVNRLDYYIPVDVY 119
Query: 136 LPGCPPKPESILDAITKLRKKISR 159
+ GC P+PE+IL+A L +KI +
Sbjct: 120 IAGCMPRPEAILEAFNYLMEKIRK 143
>pir||D71019 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii
dbj|BAA30556.1| (AP000006) 195aa long hypothetical NADH-ubiquinone oxidoreductase
subunit [Pyrococcus horikoshii]
Length = 195
Score = 130 bits (323), Expect = 2e-29
Identities = 62/133 (46%), Positives = 88/133 (65%), Gaps = 1/133 (0%)
Query: 25 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 84
L NW+R SLW + + T C IE L+ +R+D +R+G++ SPRQ DL L G VT K
Sbjct: 13 LFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGMLSDPSPRQYDLFLITGYVTPK 72
Query: 85 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 144
++ YE P+PKYV+A G+C I GG++ DSY+TV+ +DK IPVDV++ GC P+PE
Sbjct: 73 TLKRIIITYELSPDPKYVLAHGSCPINGGVY-WDSYNTVKHLDKYIPVDVFIAGCMPRPE 131
Query: 145 SILDAITKLRKKI 157
+++D I KL I
Sbjct: 132 AVMDGIYKLMDMI 144
>dbj|BAA16121.1| (D90860) NADH DEHYDROGENASE I CHAIN B (EC 1.6.5.3) (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 2) (NUO2). [Escherichia coli]
Length = 151
Score = 119 bits (296), Expect = 3e-26
Identities = 56/93 (60%), Positives = 73/93 (78%), Gaps = 2/93 (2%)
Query: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
SPRQADL++ AGT KMAP + RLY+QM EPK+VI+MGAC +GGM+ D YS V+GVD
Sbjct: 20 SPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY--DIYSVVQGVD 77
Query: 128 KLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
K IPVDVY+PGCPP+PE+ + A+ L++ I +E
Sbjct: 78 KFIPVDVYIPGCPPRPEAYMQALMLLQESIGKE 110
>gb|AAB98505.1| (U67501) carbon monoxide dehydrogenase, hydrogenase subunit CooL
(cooL) [Methanococcus jannaschii]
Length = 148
Score = 115 bits (285), Expect = 5e-25
Identities = 51/117 (43%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 40 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 99
G + C IE + + R+D ++YG+ ++PR+AD++L G VT++ A L +YE+ PEP
Sbjct: 20 GCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTPEP 79
Query: 100 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKK 156
K V+A+GAC ++GG+F V GVDK+IPVD +PGCPP+P I++ I K+ K
Sbjct: 80 KIVVAVGACALSGGIFKEG--HVVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPK 134
>pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
Length = 153
Score = 115 bits (285), Expect = 5e-25
Identities = 51/117 (43%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 40 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 99
G + C IE + + R+D ++YG+ ++PR+AD++L G VT++ A L +YE+ PEP
Sbjct: 25 GCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKTPEP 84
Query: 100 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKK 156
K V+A+GAC ++GG+F V GVDK+IPVD +PGCPP+P I++ I K+ K
Sbjct: 85 KIVVAVGACALSGGIFKEG--HVVGGVDKVIPVDAKIPGCPPRPSEIIETILKVAPK 139
>gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus]
pir||D69478 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3), 39.7 kDa subunit
homolog - Archaeoglobus fulgidus
gb|AAB89421.1| (AE000976) F420H2:quinone oxidoreductase, 39.7 kDa subunit,
putative [Archaeoglobus fulgidus]
Length = 353
Score = 113 bits (280), Expect = 2e-24
Identities = 61/147 (41%), Positives = 87/147 (58%), Gaps = 4/147 (2%)
Query: 22 LNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTV 81
L + W SLWP+ T+CC E A +D +R G + RQ +LI+ G +
Sbjct: 16 LGPIKKWGTKWSLWPVHLVTACCGAELAHAFACGYDGERIGALNYGIARQTNLIIVEGAI 75
Query: 82 TMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPP 141
T KMA L +EQMP+PK+VI MGAC + GG+F + Y V+ D ++PVD ++PGCPP
Sbjct: 76 TRKMAKVLRITWEQMPDPKFVIVMGACGLQGGIF-WNGYHMVKPSD-VVPVDFFIPGCPP 133
Query: 142 KPESILDAITKLRKKISREIHEDQTSS 168
PE++L I +L+ KI E E +TS+
Sbjct: 134 TPEALLRGIRQLQFKI--ETGEAKTSA 158
>emb|CAA76119.1| (Y16191) echC [Methanosarcina barkeri]
Length = 156
Score = 107 bits (264), Expect = 2e-22
Identities = 47/107 (43%), Positives = 74/107 (68%), Gaps = 1/107 (0%)
Query: 44 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 103
C IE + + +D +R+G++ +P+QAD+++ G+V K L +Y Q+P+PK V+
Sbjct: 20 CDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVNVLKNIYNQIPDPKVVL 79
Query: 104 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAI 150
A+GAC TGG+F D Y+ + GVD++IPVD Y+PGC P+PE+ILD +
Sbjct: 80 AVGACASTGGIFH-DCYNVIGGVDQVIPVDAYVPGCCPRPEAILDGV 125
>emb|CAB52769.1| (AJ243655) hydrogenase small subunit [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 106 bits (263), Expect = 2e-22
Identities = 49/111 (44%), Positives = 71/111 (63%)
Query: 40 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 99
G + C IE +L+ R+D ++YG+ +PR+AD+IL G VT + L R+Y + PEP
Sbjct: 23 GCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVTGAVTEQWREKLQRIYSKAPEP 82
Query: 100 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAI 150
K V+A+G C I+G +F+ + S V IPVDV +PGCPP+P IL+AI
Sbjct: 83 KIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDVEVPGCPPRPFEILEAI 133
>pir||E69151 formate hydrogenlyase, subunit 7 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB84903.1| (AE000824) formate hydrogenlyase, subunit 7 [Methanothermobacter
thermautotrophicus]
Length = 148
Score = 106 bits (262), Expect = 3e-22
Identities = 48/111 (43%), Positives = 70/111 (62%)
Query: 40 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 99
G + C IE +L+ R+D ++YG+ +PR+AD+IL G VT + L R+Y + PEP
Sbjct: 23 GCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVTGAVTEQWREKLQRIYRKAPEP 82
Query: 100 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAI 150
K V+A+G C I+G +F+ + S V IPVD +PGCPP+P IL+AI
Sbjct: 83 KIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPGCPPRPSEILEAI 133
>pir||T51316 probable CO-induced hydrogenase complex chain CooL [imported] -
Rhodospirillum rubrum
gb|AAC45118.1| (U65510) CooL [Rhodospirillum rubrum]
Length = 142
Score = 105 bits (259), Expect = 6e-22
Identities = 53/130 (40%), Positives = 84/130 (63%), Gaps = 7/130 (5%)
Query: 29 SRLSSLWPLLY---GTSC--CFIEFASLIG-SRFDFDRYGLVPRSSPRQADLILTAGTVT 82
SR+S P LY SC C +E A+ R+D +R G SP+ AD++L G +T
Sbjct: 5 SRMSKKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLT 64
Query: 83 MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPK 142
++ ++R+YE++P+PK +A+G C I+GG+F +SYS V +D+ +PVDV +PGCPP+
Sbjct: 65 ARVKDKVLRVYEEIPDPKVTVAIGVCPISGGVF-RESYSIVGPIDRYLPVDVNVPGCPPR 123
Query: 143 PESILDAITK 152
P++I++ I K
Sbjct: 124 PQAIIEGIAK 133
>sp|Q31791|NUKC_ANTFO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
pir||S71143 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK -
Anthoceros formosae chloroplast (fragment)
dbj|BAA07792.1| (D43695) ndhK [Anthoceros formosae]
Length = 80
Score = 105 bits (259), Expect = 6e-22
Identities = 48/61 (78%), Positives = 52/61 (84%)
Query: 2 NSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 61
NS++ L D TT +S I TT ND SNW+RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY
Sbjct: 20 NSMDSSLPDETTSDSTILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRY 79
Query: 62 G 62
G
Sbjct: 80 G 80
>pir||D75115 co-induced hydrogenase related, chain l PAB1890 - Pyrococcus abyssi
(strain Orsay)
emb|CAB49637.1| (AJ248285) CO-induced hydrogenase related, subunit L [Pyrococcus
abyssi]
Length = 170
Score = 101 bits (249), Expect = 9e-21
Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 44 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 103
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
Query: 104 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILD----AITKLRKKISR 159
A+G+C TGG +S T +D++IPVDV++PGCPP+PE+IL A+ KL K +
Sbjct: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
Query: 160 EIHEDQ 165
E+ ++
Sbjct: 162 EVPPEE 167
>pir||E71017 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii
dbj|BAA30541.1| (AP000006) 173aa long hypothetical NADH-ubiquinone oxidoreductase
subunit [Pyrococcus horikoshii]
Length = 173
Score = 99.5 bits (244), Expect = 3e-20
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 44 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 103
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ P+PK VI
Sbjct: 46 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVI 105
Query: 104 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILD----AITKLRKKISR 159
A+G+C TGG +S T +D +IPVDV++PGCPP+PE+IL A+ KL K +
Sbjct: 106 AVGSCA-TGGSVFYESPFTNAPLDNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKMLKG 164
Query: 160 EIHEDQ 165
EI ++
Sbjct: 165 EIPPEE 170
>sp|P16433|HYCG_ECOLI FORMATE HYDROGENLYASE SUBUNIT 7 (FHL SUBUNIT 7) (HYDROGENASE-3
COMPONENT G)
pir||S08625 hydrogenase (EC 1.18.99.1) 3 chain 7 - Escherichia coli
gb|AAA69229.1| (U29579) formate hydrogenlyase subunit 7 [Escherichia coli]
gb|AAC75761.1| (AE000356) hydrogenase activity [Escherichia coli K12]
Length = 255
Score = 99.5 bits (244), Expect = 3e-20
Identities = 58/172 (33%), Positives = 87/172 (49%), Gaps = 5/172 (2%)
Query: 2 NSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPL-LYGTSCCFIEFASLIGSRFDFDR 60
N I P+ T S+ S + L R + ++ + G + C IE + + FD +R
Sbjct: 11 NGIPVPM---TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
+G+ SPR AD++L G VT M +R ++ P+PK I+ GAC +GG+F D Y
Sbjct: 68 FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLY 126
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQ 172
G DK++PVDVY+PGCPP P + L + ++IH L Q
Sbjct: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
>emb|CAA35552.1| (X17506) hycG [Escherichia coli]
prf||2104213G hycG gene [Escherichia coli]
Length = 255
Score = 99.1 bits (243), Expect = 4e-20
Identities = 58/172 (33%), Positives = 86/172 (49%), Gaps = 5/172 (2%)
Query: 2 NSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPL-LYGTSCCFIEFASLIGSRFDFDR 60
N I P+ T S+ S + L R + ++ + G + C IE + FD +R
Sbjct: 11 NGIPVPM---TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFGTLSPLFDAER 67
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
+G+ SPR AD++L G VT M +R ++ P+PK I+ GAC +GG+F D Y
Sbjct: 68 FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLY 126
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIHEDQTSSLSSQ 172
G DK++PVDVY+PGCPP P + L + ++IH L Q
Sbjct: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
>gb|AAG57826.1|AE005500_5 (AE005500) hydrogenase activity [Escherichia coli O157:H7]
Length = 255
Score = 98.3 bits (241), Expect = 8e-20
Identities = 56/162 (34%), Positives = 85/162 (51%), Gaps = 5/162 (3%)
Query: 2 NSIEFPLIDRTTQNSVISTTLNDLSNWSRLSSLWPL-LYGTSCCFIEFASLIGSRFDFDR 60
N I P+ T S+ S + L R + ++ + G + C IE + + FD +R
Sbjct: 11 NGIPVPM---TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
Query: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
+G+ SPR AD++L G VT M +R ++ P+PK I+ GAC +GG+F D Y
Sbjct: 68 FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLY 126
Query: 121 STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREIH 162
G DK++PVDVY+PGCPP P + L + ++IH
Sbjct: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
>gb|AAG57599.1|AE005478_9 (AE005478) hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7]
Length = 252
Score = 96.7 bits (237), Expect = 2e-19
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 40 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 99
G + C IE + I FD +R+G+ SSPR AD++L G VT M +R YE P+
Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102
Query: 100 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISR 159
K ++ GAC + GG+F D YS G D ++P+DV++PGCPP P + + + +
Sbjct: 103 KICVSYGACGVGGGIFH-DLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161
Query: 160 EIH 162
+IH
Sbjct: 162 KIH 164
>dbj|BAA16377.1| (D90877) probable hydrogenase 3 protein 7 [Escherichia coli]
Length = 251
Score = 96.7 bits (237), Expect = 2e-19
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 40 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 99
G + C IE + I FD +R+G+ SSPR AD++L G VT M +R YE P+
Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102
Query: 100 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISR 159
K ++ GAC + GG+F D YS G D ++P+DV++PGCPP P + + + +
Sbjct: 103 KICVSYGACGVGGGIFH-DLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161
Query: 160 EIH 162
+IH
Sbjct: 162 KIH 164
>sp|P77668|HYFI_ECOLI HYDROGENASE-4 COMPONENT I
pir||H65024 psbG homolog protein b2489 - Escherichia coli (strain K-12)
gb|AAC75542.1| (AE000335) hydrogenase 4 Fe-S subunit [Escherichia coli K12]
gb|AAB88571.1| (M63654) HyfI [Escherichia coli]
Length = 252
Score = 96.7 bits (237), Expect = 2e-19
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 40 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 99
G + C IE + I FD +R+G+ SSPR AD++L G VT M +R YE P+
Sbjct: 43 GCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH 102
Query: 100 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISR 159
K ++ GAC + GG+F D YS G D ++P+DV++PGCPP P + + + +
Sbjct: 103 KICVSYGACGVGGGIFH-DLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ 161
Query: 160 EIH 162
+IH
Sbjct: 162 KIH 164
>pir||B64470 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
gb|AAB99371.1| (U67576) formate hydrogenlyase, subunit 7 [Methanococcus
jannaschii]
Length = 151
Score = 94.4 bits (231), Expect = 1e-18
Identities = 49/125 (39%), Positives = 75/125 (59%), Gaps = 7/125 (5%)
Query: 40 GTSCCFIEFASLIGSRF-DFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 98
G + C IE + I S F D ++Y + +PR+AD+++ G VT +A SL ++YE++PE
Sbjct: 23 GCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVAESLRKIYEKIPE 82
Query: 99 PKYVIAMGACTITGGMFST------DSYSTVRGVDKLIPVDVYLPGCPPKPESILDAITK 152
PK V+A+GAC + GG++ S V+ +IPVDV +PGC P+PE I+ I K
Sbjct: 83 PKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIIAGIVK 142
Query: 153 LRKKI 157
K+
Sbjct: 143 ALPKV 147
>gb|AAB88386.1| (AF034788) formate hydrogenlyase subunit 7 [Methanococcus
maripaludis]
Length = 147
Score = 94.0 bits (230), Expect = 1e-18
Identities = 49/143 (34%), Positives = 85/143 (59%), Gaps = 7/143 (4%)
Query: 22 LNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRF-DFDRYGLVPRSSPRQADLILTAGT 80
L +LS + + G + C IE + + S F D ++Y + +PR+AD+++ G
Sbjct: 2 LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61
Query: 81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFST-----DSYSTVRG-VDKLIPVDV 134
VT ++ SL ++Y+++PEPK V+A GAC + GG+++ + + + G V+ +IPVD+
Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDI 121
Query: 135 YLPGCPPKPESILDAITKLRKKI 157
+PGCPP+PE ++ I K KI
Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144
>gb|AAG43130.1|AF060512_1 (AF060512) My017 protein [Homo sapiens]
Length = 214
Score = 90.1 bits (220), Expect = 2e-17
Identities = 52/163 (31%), Positives = 85/163 (51%), Gaps = 28/163 (17%)
Query: 12 TTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQ 71
+++ + L+DL NW+R SSLWP+ +G +CC +E + R+D DR+G+V R+SPRQ
Sbjct: 57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 116
Query: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131
+D+++ AGT+T KMAP+ L + P P G + +R +L+P
Sbjct: 117 SDVMIVAGTLTNKMAPA---LRKSPPRP-----------DAGAALRGLHGELRQRGRLLP 162
Query: 132 VDV--------------YLPGCPPKPESILDAITKLRKKISRE 160
+ + P P E++L I +L++KI RE
Sbjct: 163 LFLLGGEGLRPHRARGHLHPRLPTTAEALLYGILQLQRKIKRE 205
>pir||C70850 probable oxidoreductase subunit - Mycobacterium tuberculosis
(strain H37RV)
emb|CAA16263.1| (AL021428) hypothetical protein Rv0082 [Mycobacterium tuberculosis]
Length = 159
Score = 87.0 bits (212), Expect = 2e-16
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 44 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 103
C +E + G +D +R+G +SP+ AD +L G VT MA L + E P P+ VI
Sbjct: 48 CEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPRPRVVI 107
Query: 104 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKK 156
A G C + G+F+ D+Y V V +++PVDV + GCPP P +I+ A+ + K
Sbjct: 108 ACGDCALNRGVFA-DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159
>pir||C75060 hydrogenase (EC 1.-.-.-) 4 component I PAB1396 [imported] -
Pyrococcus abyssi (strain Orsay)
emb|CAB50376.1| (AJ248287) HYDROGENASE-4 COMPONENT I (EC 1.-.-.-). [Pyrococcus
abyssi]
Length = 271
Score = 83.9 bits (204), Expect = 2e-15
Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 30 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 86
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
Query: 87 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 133
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
Query: 134 VYLPGCPPKPESILDAITKL 153
+Y+PGCPP PE IL + +L
Sbjct: 123 MYIPGCPPSPEEILYGLAQL 142
>emb|CAC23321.1| (AL512966) formate hydrogenlyase, subunit 7 [Sulfolobus
solfataricus]
Length = 201
Score = 83.1 bits (202), Expect = 3e-15
Identities = 45/126 (35%), Positives = 72/126 (56%), Gaps = 14/126 (11%)
Query: 34 LWPLLYGT-SCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRL 92
L+P+ GT C +E + +D R+ + ++PR AD ++ G +T KM L +
Sbjct: 87 LYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEVLKKA 146
Query: 93 YEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD--VYLPGCPPKPESILDAI 150
YE MPEPK VI +GAC I+GG+ + + +P++ V +PGCPP P +IL+A+
Sbjct: 147 YEAMPEPKVVILLGACAISGGI-----------IGEGVPLEAVVEIPGCPPNPFTILEAL 195
Query: 151 TKLRKK 156
K++ K
Sbjct: 196 MKVKGK 201
>pir||E69032 formate hydrogenlyase, subunit 7 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85728.1| (AE000891) formate hydrogenlyase, subunit 7 [Methanothermobacter
thermautotrophicus]
Length = 148
Score = 81.5 bits (198), Expect = 8e-15
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 25 LSNWSRLSSLWPLLY---GTSCCFIEFASLIGS-RFDFDRYGLVPRSSPRQADLILTAGT 80
L ++SR ++ +L G + C IE + + S ++D ++Y + +PR+AD+++ G
Sbjct: 3 LKSFSRARAVHAMLVYTGGCNGCDIEIVNAVFSPKYDAEQYKIFLTWNPREADVLIVTGP 62
Query: 81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFST-----DSYSTVRGVDKLIPVDVY 135
VT + L +Y +PEPK VIA GAC + GG++ S VDK+IPVD
Sbjct: 63 VTKQNEEPLKAIYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAK 122
Query: 136 LPGCPPKPESIL-DAITKLRKKISRE 160
+PGC +PE +L A+ L K + +
Sbjct: 123 VPGCAVRPEDVLAGAVAALPKLLEAD 148
>emb|CAB52790.1| (AJ243656) hydrogenase small subunit [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 81.1 bits (197), Expect = 1e-14
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 25 LSNWSRLSSLWPLLY---GTSCCFIEFASLIGS-RFDFDRYGLVPRSSPRQADLILTAGT 80
L ++SR ++ +L G + C IE + + S ++D ++Y + +PR+AD+++ G
Sbjct: 3 LKSFSRARAVHAMLVYTGGCNGCDIEIVNAVLSPKYDAEQYKIFLTWNPREADVLIVTGP 62
Query: 81 VTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFST-----DSYSTVRGVDKLIPVDVY 135
VT + L +Y +PEPK VIA GAC + GG++ S VDK+IPVD
Sbjct: 63 VTKQNEGPLKEIYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAK 122
Query: 136 LPGCPPKPESIL-DAITKLRKKISRE 160
+PGC +PE +L A+ L K + +
Sbjct: 123 VPGCAVRPEDVLAGAVAALPKLLEAD 148
>pir||PX0053 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) 20K chain - bovine
(fragments)
Length = 96
Score = 70.2 bits (169), Expect = 2e-11
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Query: 69 PRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 128
P+ A L + G + L+++Y+QMPEP+YV++MG+C GG + SYS VR
Sbjct: 16 PKPAALPSSRGEYVVAKLDDLIKVYDQMPEPRYVVSMGSCANGGGYYHY-SYSVVR---- 70
Query: 129 LIPVDVYLPGCPP-KPESILDAI 150
++PVD+Y+PGCPP P +D I
Sbjct: 71 IVPVDIYVPGCPPASPRYDMDRI 93
>sp|Q60340|FRHG_METJA COENZYME F420 HYDROGENASE GAMMA SUBUNIT
(8-HYDROXY-5-DEAZAFLAVIN-REDUCING HYDROGENASE GAMMA
SUBUNIT) (FRH)
pir||G64303 coenzyme F420 hydrogenase gamma chain homolog - Methanococcus
jannaschii
gb|AAB98010.1| (U67461) coenzyme F420-reducing hydrogenase, gamma subunit
[Methanococcus jannaschii]
Length = 230
Score = 56.2 bits (133), Expect = 3e-07
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGM--------FSTDSYST 122
+ D+ L G+V + SL E + K V+A+GAC TGG+ S +S+
Sbjct: 52 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 111
Query: 123 VRGVDKLIPVDVYLPGCPPKPESILDAIT 151
+ ++I VD+ +PGCPP PE+I+ IT
Sbjct: 112 FSPLTEVIKVDLAIPGCPPSPEAIVGVIT 140
>sp|P19498|FRHG_METTH COENZYME F420 HYDROGENASE GAMMA SUBUNIT
(8-HYDROXY-5-DEAZAFLAVIN-REDUCING HYDROGENASE GAMMA
SUBUNIT) (FRH)
Length = 236
Score = 53.1 bits (125), Expect = 3e-06
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG--------GMFSTDSYST 122
+ DL L G+V ++ SL L E + K V A G+C TG G + S+ +
Sbjct: 56 EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHES 115
Query: 123 VRGVDKLIPVDVYLPGCPPKPESILDAITKL 153
+ LI VD+ +PGCPP PE I A+ L
Sbjct: 116 FVPIADLIDVDLAIPGCPPSPEIIAKAVVAL 146
>gb|AAB85778.1| (AE000895) coenzyme F420-reducing hydrogenase, gamma subunit
[Methanothermobacter thermautotrophicus]
Length = 275
Score = 53.1 bits (125), Expect = 3e-06
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG--------GMFSTDSYST 122
+ DL L G+V ++ SL L E + K V A G+C TG G + S+ +
Sbjct: 95 EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQPSHES 154
Query: 123 VRGVDKLIPVDVYLPGCPPKPESILDAITKL 153
+ LI VD+ +PGCPP PE I A+ L
Sbjct: 155 FVPIADLIDVDLAIPGCPPSPEIIAKAVVAL 185
>pir||C35620 coenzyme F420 hydrogenase (EC 1.12.99.1) gamma chain -
Methanobacterium thermoautotrophicum
gb|AAA72189.1| (J02914) F420 hydrogenase gamma-subuint (frhG) [Methanothermobacter
thermautotrophicus]
Length = 236
Score = 52.3 bits (123), Expect = 5e-06
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG--------GMFSTDSYST 122
+ DL L G+V ++ SL L E + K V A G+C TG G + S+ +
Sbjct: 56 EMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAQTGCFTRYSRGGQQAQPSHES 115
Query: 123 VRGVDKLIPVDVYLPGCPPKPESILDAITKL 153
+ LI VD+ +PGCPP PE I A+ L
Sbjct: 116 FVPIADLIDVDLAIPGCPPSPEIIAKAVVAL 146
>emb|CAA74092.1| (Y13763) F420-reducing hydrogenase isoenzyme II gamma subunit
[Methanosarcina barkeri]
Length = 259
Score = 51.5 bits (121), Expect = 9e-06
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTI--------TGGMFSTDSYST 122
+ D+ L G+V ++ S+ + E + K V+A+G+C GG + + +
Sbjct: 53 EMDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHES 112
Query: 123 VRGVDKLIPVDVYLPGCPPKPESI 146
+ LI VDVY+PGCPP PE I
Sbjct: 113 YLPIGDLIDVDVYIPGCPPSPELI 136
>pir||S24797 coenzyme F420-reducing hydrogenase chain furG [similarity] -
Methanococcus voltae
emb|CAA43502.1| (X61202) F420-reducing hydrogenase subunit [Methanococcus voltae]
Length = 228
Score = 50.8 bits (119), Expect = 2e-05
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 66 RSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG--------GMFST 117
R P D+IL G+V + +L + K ++A+GAC +G G S
Sbjct: 45 REVPDDVDIILLEGSVCLSDHHALETALACREKAKILVALGACAASGNITRFSRGGQMSK 104
Query: 118 DSYSTVRGVDKLIPVDVYLPGCPPKPESILDAIT 151
+ + +++ D+ +PGCPP PESI+ IT
Sbjct: 105 PVHDAFAPLTEVVKCDLAIPGCPPSPESIVAVIT 138
>emb|CAA74096.1| (Y13764) F420-reducing hydrogenase isoenzyme I gamma subunit
[Methanosarcina barkeri]
Length = 259
Score = 50.0 bits (117), Expect = 3e-05
Identities = 26/84 (30%), Positives = 43/84 (50%), Gaps = 8/84 (9%)
Query: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACT--------ITGGMFSTDSYST 122
+ D+ L G+V ++ S+ + E + + V+A+G+C GG + + +
Sbjct: 53 EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHNHPQHES 112
Query: 123 VRGVDKLIPVDVYLPGCPPKPESI 146
+ LI VDVY+PGCPP PE I
Sbjct: 113 YLPIGDLIDVDVYIPGCPPSPELI 136
>dbj|BAA16122.1| (D90860) NADH DEHYDROGENASE I CHAIN B (EC 1.6.5.3)
(NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2) (NUO2).
[Escherichia coli]
Length = 98
Score = 48.8 bits (114), Expect = 6e-05
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 9 IDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 62
+++ +V LND+ NW R +S+WP +G SCC++E + + D R+G
Sbjct: 34 LEQEVNKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFG 87
>sp|Q00393|FRHG_METVO COENZYME F420 HYDROGENASE GAMMA SUBUNIT
(8-HYDROXY-5-DEAZAFLAVIN-REDUCING HYDROGENASE GAMMA
SUBUNIT) (FRH)
pir||S16723 coenzyme F420 hydrogenase (EC 1.12.99.1) gamma chain frcG
[similarity] - Methanococcus voltae
emb|CAA43498.1| (X61201) F420-reducing hydrogenase subunit [Methanococcus voltae]
Length = 243
Score = 48.8 bits (114), Expect = 6e-05
Identities = 31/98 (31%), Positives = 50/98 (50%), Gaps = 9/98 (9%)
Query: 63 LVPRSSPRQADLILTAGTVTMKMAPSLVR-LYEQMPEPKYVIAMGACTITGGM------- 114
L+ R P D+ L G+V + S+ L + K ++A+GAC +GG+
Sbjct: 56 LIERDIPGGIDIALVEGSVCLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTRFRRVG 115
Query: 115 -FSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAIT 151
S S+++ + +I VD+ LPGCPP ESI+ +T
Sbjct: 116 QMSQPSHASFVPIGDVIKVDLALPGCPPSTESIVKLLT 153
>gb|AAB94935.1| (AF039208) NiFe hydrogenase delta subunit [Thermococcus litoralis]
Length = 263
Score = 44.1 bits (102), Expect = 0.002
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 31/139 (22%)
Query: 41 TSC--CFIEFASL-----IGSRFDFDRYGLVPRSSP--RQADLILTAGTVTMKMAPSLVR 91
TSC C ++FA + + + + + + +V R S R+ D+ G+V+ + LV+
Sbjct: 14 TSCYGCQLQFAMMDEILHLLDKAEIECWFMVERDSDEDREVDIAFIEGSVSTQEEVELVK 73
Query: 92 LYEQMPEPKYVIAMGACTITGGMFS-------TDSYSTVRG-------------VDKLIP 131
+ + K V+A+GAC GG+ S ++ + TV G V+K I
Sbjct: 74 KIRE--KAKIVVAVGACATQGGVQSWGKDKELSELWKTVYGDAHVKFEPKMAEPVEKYIK 131
Query: 132 VDVYLPGCPPKPESILDAI 150
VD L GCPP+ + L A+
Sbjct: 132 VDYKLYGCPPEKKDFLYAL 150
>pir||F64448 methylviologen-reducing hydrogenase gamma chain homolog -
Methanococcus jannaschii
gb|AAB99193.1| (U67560) methylviologen-reducing hydrogenase, gamma chain (vhuG)
[Methanococcus jannaschii]
Length = 288
Score = 43.8 bits (101), Expect = 0.002
Identities = 34/120 (28%), Positives = 47/120 (38%), Gaps = 33/120 (27%)
Query: 65 PRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGM---------- 114
P+ P D+ L G + + L+ +E + K VIA G C GG+
Sbjct: 48 PKEIPEGIDVFLVEGGIRNEHDEHLI--HEIREKSKIVIAWGTCAAYGGIPGLGNLYKKE 105
Query: 115 ------FSTDSYST---------------VRGVDKLIPVDVYLPGCPPKPESILDAITKL 153
+STDS V+ + I VD +PGCPP P+ I DAI L
Sbjct: 106 ELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIAL 165
>gb|AAB21279.1| NADH:ubiquinone oxidoreductase (complex I) iron-sulfur protein
fraction 20 kda polypeptide peptides T-4/T-7 [cattle,
heart, Peptide Mitochondrial Partial, 33 aa]
Length = 33
Score = 42.2 bits (97), Expect = 0.006
Identities = 18/34 (52%), Positives = 26/34 (75%), Gaps = 1/34 (2%)
Query: 91 RLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVR 124
++Y+QMPEP+YV++MG+C GG + SYS VR
Sbjct: 1 KVYDQMPEPRYVVSMGSCANGGGYYHY-SYSVVR 33
>pir||S16726 methylviologen-reducing hydrogenase chain vhcG - Methanococcus
voltae
Length = 289
Score = 39.5 bits (90), Expect = 0.038
Identities = 33/112 (29%), Positives = 46/112 (40%), Gaps = 18/112 (16%)
Query: 66 RSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGG------MFSTDS 119
R P D+ L G V + +L E E K VIA G C + GG ++ST
Sbjct: 45 REIPDDIDVALIEGGV--RSGENLHIAREMREEAKVVIAFGTCAVYGGIPGMGNLYSTAE 102
Query: 120 Y----------STVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREI 161
S V + ++I VD PPKPE I +T L ++ E+
Sbjct: 103 LLEKAPVLHLTSRVTPLSQVIDVDYIFQDAPPKPELIASVLTALLEEKEPEL 154
>gb|AAF61853.1|AF176650_3 (AF176650) sulfhydrogenase II subunit d [Pyrococcus furiosus]
Length = 237
Score = 39.1 bits (89), Expect = 0.050
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 66 RSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF-----STDSY 120
+ S + D+ L GTV+ + ++R + +Y+IA+G C G + S ++Y
Sbjct: 43 KKSREKIDVALVTGTVSTQRDLEVLR--DARNRSEYLIALGTCATHGSVQGVIENSKEAY 100
Query: 121 STVRG-------------VDKLIPVDVYLPGCPPKPESILDAITKLRKKI 157
V G V +PVD +PGCP E + + + K I
Sbjct: 101 RRVYGNGKPPVKLLNPKPVTDYVPVDFAIPGCPYDKEEVFQVLIDIAKGI 150
>sp|Q58136|Y726_METJA HYPOTHETICAL PROTEIN MJ0726
pir||F64390 coenzyme F420 hydrogenase (EC 1.12.99.1) gamma chain -
Methanococcus jannaschii
gb|AAB98722.1| (U67519) coenzyme F420-reducing hydrogenase, gamma subunit
[Methanococcus jannaschii]
Length = 216
Score = 38.7 bits (88), Expect = 0.066
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG---- 125
++ D++L G V + + ++ E K +IA+G+C ++GG F G
Sbjct: 23 KEKDIVLVGGAVNLDDEEEVKKIMEIRKNSKVLIAVGSCAVSGG-FQRMLIGLENGFPQR 81
Query: 126 ---VDKLIPVDVYLPGCPPKPESI 146
+ ++ VD + GCPP E +
Sbjct: 82 FVRIGDVVKVDYAIIGCPPDEEEV 105
>pir||C75133 cytochrome-c3 hydrogenase delta chain PAB1786 - Pyrococcus abyssi
(strain Orsay)
emb|CAB49780.1| (AJ248285) CYTOCHROME-C3 HYDROGENASE DELTA CHAIN [Pyrococcus
abyssi]
Length = 261
Score = 37.9 bits (86), Expect = 0.11
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFS-TDS-----YSTV 123
+ D+ G+V+ + LV+ + K V+A+GAC + GG+ S TD + TV
Sbjct: 50 KPVDIAFIEGSVSTEEEVELVKKIRE--NAKIVVAVGACAVQGGVQSWTDKSLEELWKTV 107
Query: 124 RG-------------VDKLIPVDVYLPGCPPKPESILDAI 150
G V K I VD + GCPP+ L A+
Sbjct: 108 YGDAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 147
>pir||A71075 probable cytochrome-c3 hydrogenase delta chain - Pyrococcus
horikoshii
dbj|BAA30395.1| (AP000005) 266aa long hypothetical cytochrome-c3 hydrogenase delta
chain [Pyrococcus horikoshii]
Length = 266
Score = 37.1 bits (84), Expect = 0.19
Identities = 30/97 (30%), Positives = 44/97 (44%), Gaps = 21/97 (21%)
Query: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFS-TDS-----YSTVRG- 125
D+ G+V+ + LV+ + K V+A+GAC + GG+ S TD + TV G
Sbjct: 58 DIAFIEGSVSTEEEVELVKKIRE--NSKIVVAVGACAVQGGVQSWTDKSLEELWRTVYGD 115
Query: 126 ------------VDKLIPVDVYLPGCPPKPESILDAI 150
V K I VD + GCPP+ L A+
Sbjct: 116 AKVKFKPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 152
>pir||I39733 hydrogenase small chain - Anabaena variabilis
emb|CAA55876.1| (X79285) hydrogenase small subunit [Anabaena variabilis]
Length = 205
Score = 36.7 bits (83), Expect = 0.25
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 44/164 (26%)
Query: 30 RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS-------PRQADLILTAGTVT 82
+L+++W L G S C + F L D V S P D++L G +
Sbjct: 29 KLATVW--LGGCSGCHMSFLDLDEWLIDLAAQADVVFSPFADIKEYPEGVDVVLVEGAIA 86
Query: 83 MKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDS----------------------- 119
+ + +++ + + +I+ G C +TG + + +
Sbjct: 87 NEEHLTTIKIVRERSQ--ILISFGDCAVTGNVTALRNPLGSAEPVLQRCYIQAVDINPQI 144
Query: 120 ----------YSTVRGVDKLIPVDVYLPGCPPKPESILDAITKL 153
V V ++PVD+YLPGCPP I A+ L
Sbjct: 145 PQEPGIVPPLLDRVTPVHSIVPVDIYLPGCPPSATRIRAALEPL 188
>pir||S48835 cytochrome-c3 hydrogenase (EC 1.12.2.1) delta chain - Pyrococcus
furiosus
emb|CAA53036.1| (X75255) hydrogenase (delta subunit) [Pyrococcus furiosus]
Length = 261
Score = 35.6 bits (80), Expect = 0.57
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 71 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFS------TDSYSTVR 124
+ D+ G+V+ + LV+ + K V+A+GAC + GG+ S + + V
Sbjct: 51 KVDIAFIEGSVSTEEEVELVKKIRE--NAKIVVAVGACAVQGGVQSWSEKPLEELWKKVY 108
Query: 125 G-------------VDKLIPVDVYLPGCPPKPESILDAI 150
G V K I VD + GCPP+ + L A+
Sbjct: 109 GDAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKKDFLYAL 147
>pir||A75070 cytochrome-c3 hydrogenase (EC 1.12.2.1) delta chain PAB0640 -
Pyrococcus abyssi (strain Orsay)
emb|CAB49862.1| (AJ248286) HYDROGENASE (EC 1.12.2.1) (CYTOCHROME-C3 HYDROGENASE
DELTA CHAIN) [Pyrococcus abyssi]
Length = 241
Score = 35.2 bits (79), Expect = 0.75
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL--- 129
D+ L G+V+ + +V+ + +Y+IA+G C GG+ + S G+ K+
Sbjct: 53 DVALVTGSVSTQRDLEVVK--DARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGD 110
Query: 130 ----------------IPVDVYLPGCPPKPESILDAITKLRKKI 157
+PVD +PGCP + + + + + +
Sbjct: 111 MKGPSKVLEPRAVVEHVPVDFAIPGCPYDKDEVFQVLMDIARGV 154
>gi|11498969 methylviologen-reducing hydrogenase, subunit gamma (vhuG)
[Archaeoglobus fulgidus]
pir||D69421 methylviologen-reducing hydrogenase, subunit gamma (vhuG) homolog -
Archaeoglobus fulgidus
gb|AAB89871.1| (AE001009) methylviologen-reducing hydrogenase, subunit gamma
(vhuG) [Archaeoglobus fulgidus]
Length = 293
Score = 34.8 bits (78), Expect = 0.98
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 123 VRGVDKLIPVDVYLPGCPPKPESILDA 149
V+ +D ++ VD Y+ GCPP PE I +A
Sbjct: 127 VKPLDSVVEVDCYIGGCPPTPEQIYNA 153
>gb|AAK11582.1|AF323616_1 (AF323616) HupS [Clostridium acetobutylicum]
Length = 291
Score = 34.4 bits (77), Expect = 1.3
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 100 KYVIAMGACTITGGMFST-DSYSTVRGVDKLIPVDVY-LPGCPPKPESILDAITKL 153
KYV+A+G C +GG+ + + S + + ++I +V LPGCP P+ ++ + L
Sbjct: 138 KYVLAVGTCASSGGISAAKPNPSLSKSISEVINHEVINLPGCPCHPDWVVGTLAHL 193
>pdb|2FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|C Chain C, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|E Chain E, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|G Chain G, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|I Chain I, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|2FRV|S Chain S, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 264
Score = 34.4 bits (77), Expect = 1.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 94 EQMPEPKYVIAMGACTITGGMFS-----TDSYSTVRGVDKLIPVDVYLPGCPPKPESILD 148
E P+ K VIA+G C GG+ + T + + KL + + GCPP P + +
Sbjct: 98 EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 157
Query: 149 AITKLRKK 156
+ L K
Sbjct: 158 TVVHLLTK 165
>gb|AAB53703.1| (U88400) bidirectional hydrogenase small subunit [Prochlorothrix
hollandica]
Length = 178
Score = 34.4 bits (77), Expect = 1.3
Identities = 38/158 (24%), Positives = 55/158 (34%), Gaps = 45/158 (28%)
Query: 30 RLSSLWPLLYGTSCCFIEFASLIGSRFDFDR--------YGLVPRSSPRQADLILTAGTV 81
+ +++W L G S C + F L D R G + P D+ L G V
Sbjct: 5 KFATVW--LAGCSGCHMSFLDLDEWLIDLAREVEVVYSPVGCDLKDYPEGVDVCLVEGAV 62
Query: 82 TMKMAPSLVRLYEQMPEPKYVIAMGACTIT------------GGMFSTDSY--------- 120
+ +L Y K VI+ G C +T G +Y
Sbjct: 63 ANE--ENLELAYRVRQRTKMVISFGDCAVTANVPAMLGDGDAGNAVLKRAYLELGDVTPQ 120
Query: 121 ------------STVRGVDKLIPVDVYLPGCPPKPESI 146
V + ++IPVD+YLPGCPP + I
Sbjct: 121 LPDEPGIVPPLLDQVLPLHQVIPVDLYLPGCPPPADRI 158
>pdb|1FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
pdb|1FRV|C Chain C, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 264
Score = 34.4 bits (77), Expect = 1.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 94 EQMPEPKYVIAMGACTITGGMFS-----TDSYSTVRGVDKLIPVDVYLPGCPPKPESILD 148
E P+ K VIA+G C GG+ + T + + KL + + GCPP P + +
Sbjct: 98 EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 157
Query: 149 AITKLRKK 156
+ L K
Sbjct: 158 TVVHLLTK 165
>sp|P12943|PHNS_DESGI PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT PRECURSOR (NIFE
HYDROGENLYASE SMALL CHAIN)
Length = 288
Score = 34.4 bits (77), Expect = 1.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 94 EQMPEPKYVIAMGACTITGGMFS-----TDSYSTVRGVDKLIPVDVYLPGCPPKPESILD 148
E P+ K VIA+G C GG+ + T + + KL + + GCPP P + +
Sbjct: 122 EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 181
Query: 149 AITKLRKK 156
+ L K
Sbjct: 182 TVVHLLTK 189
>pir||HQDVSG cytochrome-c3 hydrogenase (EC 1.12.2.1) (NiFe) small chain
precursor [validated] - Desulfovibrio gigas
Length = 314
Score = 34.4 bits (77), Expect = 1.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 94 EQMPEPKYVIAMGACTITGGMFS-----TDSYSTVRGVDKLIPVDVYLPGCPPKPESILD 148
E P+ K VIA+G C GG+ + T + + KL + + GCPP P + +
Sbjct: 148 EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 207
Query: 149 AITKLRKK 156
+ L K
Sbjct: 208 TVVHLLTK 215
>dbj|BAB14543.1| (AK023360) unnamed protein product [Homo sapiens]
Length = 696
Score = 34.0 bits (76), Expect = 1.7
Identities = 29/113 (25%), Positives = 52/113 (45%), Gaps = 20/113 (17%)
Query: 72 ADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIP 131
A + AGT+T++++P PEP+ + + T + + S G LIP
Sbjct: 62 ASFVSQAGTLTLRISP---------PEPQ---SFASKTGSETKITYSSGGQPVGTASLIP 109
Query: 132 VD------VYLPGCPPKPESILDAITKLRKKISRE--IHEDQTSSLSSQRENR 176
+ + LPG P P SIL + L+ K + +D+T+S+ ++E +
Sbjct: 110 LQSGSFALLQLPGQKPVPSSILQHVASLQMKRESQNPDQKDETNSIKREQETK 162
>pdb|1FRF|S Chain S, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 264
Score = 34.0 bits (76), Expect = 1.7
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 100 KYVIAMGACTITGGMFSTD-SYSTVRGVDKLIPVD-VYLPGCPPKPESILDAITKLRKKI 157
K +I +G C+ GG+ + S +GV + + V + +PGCPP P + + A+ + K
Sbjct: 106 KGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKG 165
Query: 158 SREIHED 164
++ E+
Sbjct: 166 IPDLDEN 172
>pir||S22199 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) - potato
buckeye rot agent
Length = 452
Score = 34.0 bits (76), Expect = 1.7
Identities = 16/36 (44%), Positives = 22/36 (60%), Gaps = 2/36 (5%)
Query: 120 YSTVRGVDKLIPVDVYLPGCPPK--PESILDAITKL 153
+ T G++ L PV ++L CPPK PE IL A+ L
Sbjct: 134 FLTTHGIEDLFPVQIWLEDCPPKPSPEPILLALKAL 169
>sp|P28624|HIS7_PHYPR IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE (IGPD)
emb|CAA77675.1| (Z11591) imidazoleglycerol-phosphate dehydratase [Phytophthora
parasitica]
Length = 452
Score = 34.0 bits (76), Expect = 1.7
Identities = 16/36 (44%), Positives = 22/36 (60%), Gaps = 2/36 (5%)
Query: 120 YSTVRGVDKLIPVDVYLPGCPPK--PESILDAITKL 153
+ T G++ L PV ++L CPPK PE IL A+ L
Sbjct: 134 FLTTHGIEDLFPVQIWLEDCPPKPSPEPILLALKAL 169
>gb|AAF43137.1|AF216303_1 (AF216303) [NiFe] hydrogenase small subunit [Desulfovibrio
desulfuricans]
Length = 266
Score = 32.8 bits (73), Expect = 3.8
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 96 MPEPKYVIAMGACTITGGMFSTDSYSTV-RGVDK----LIPVDVYLPGCPPKPESILDAI 150
+P+ K V+++G C GG+ + T +G++ L + +PGCPP P +++ +
Sbjct: 102 LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKAINVPGCPPNPLNMVGTL 161
Query: 151 TKLRKKISREIHE 163
K E+ E
Sbjct: 162 VAFLKGQKIELDE 174
>pir||C59304 methylviologen-reducing hydrogenase gamma chain homolog vhuG
[similarity] - Methanococcus voltae
emb|CAA43509.1| (X61204) methylviologen-reducing hydrogenase subunit [Methanococcus
voltae]
Length = 287
Score = 32.8 bits (73), Expect = 3.8
Identities = 23/94 (24%), Positives = 38/94 (39%), Gaps = 32/94 (34%)
Query: 92 LYEQMPEPKYVIAMGACTITGG----------------MFSTDS---------------- 119
++E + K VIA G C + GG ++ T++
Sbjct: 71 IHEIREKSKVVIAWGTCAVYGGIPGLGNLYSAEQLKKTVYGTETTDNVGELPSDEMVPPL 130
Query: 120 YSTVRGVDKLIPVDVYLPGCPPKPESILDAITKL 153
++V V ++ V+ +PGCPP+PE AI L
Sbjct: 131 TNSVMPVPSIVDVEYVIPGCPPRPEINAGAIVAL 164
>pir||S67477 F420-nonreducing hydrogenase (EC 1.12.99.-) vhtG precursor -
Methanosarcina mazei
emb|CAA58176.1| (X83112) F420-nonreducing hydrogenase [Methanosarcina mazei]
prf||2104206D NiFe hydrogenase:SUBUNIT=small [Methanosarcina mazeii]
Length = 383
Score = 32.8 bits (73), Expect = 3.8
Identities = 41/160 (25%), Positives = 64/160 (39%), Gaps = 27/160 (16%)
Query: 62 GLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDS-- 119
G +P + P + L G T K L E ++A+GAC GG+ S DS
Sbjct: 135 GSIP-NGPDGSGRYLVIGNKTFKET-----LGEAAENANAIVAVGACACWGGITSADSDI 188
Query: 120 -----YSTV--------RGVDKLIPVD---VYLPGCPPKPESILDAI-TKLRKKISREIH 162
Y V +G+ K + +D + +PGCP P+ IL + + KI +I
Sbjct: 189 EKETDYRGVAFKKTDASKGMLKELGIDKPVINIPGCPAHPDWILLTLGAVILGKI--KIP 246
Query: 163 EDQTSSLSSQRENRCFTTNHKFYVERSTHTGNYDQVLFHQ 202
+D ++L + F E G YD+ F +
Sbjct: 247 DDLPAALDQYGRPKLFFPPDHTVHENCPRRGYYDRGEFDE 286
>pir||S24800 methylviologen-reducing hydrogenase chain vhuG - Methanococcus
voltae
Length = 287
Score = 32.8 bits (73), Expect = 3.8
Identities = 23/94 (24%), Positives = 38/94 (39%), Gaps = 32/94 (34%)
Query: 92 LYEQMPEPKYVIAMGACTITGG----------------MFSTDS---------------- 119
++E + K VIA G C + GG ++ T++
Sbjct: 71 IHEIREKSKVVIAWGTCAVYGGIPGLGNLYSAEQLKKTVYGTETTDNVGELPSDEMVPPL 130
Query: 120 YSTVRGVDKLIPVDVYLPGCPPKPESILDAITKL 153
++V V ++ V+ +PGCPP+PE AI L
Sbjct: 131 TNSVMPVPSIVDVEYVIPGCPPRPEINAGAIVAL 164
>sp|P17086|URE1_PROMI UREASE ALPHA SUBUNIT (UREA AMIDOHYDROLASE)
pir||D43719 urease (EC 3.5.1.5) 62K chain - Proteus mirabilis
gb|AAA25669.1| (M31834) urease subunit C [Proteus mirabilis]
Length = 567
Score = 32.5 bits (72), Expect = 4.9
Identities = 27/102 (26%), Positives = 49/102 (47%), Gaps = 7/102 (6%)
Query: 102 VIAMGACTITGGMFSTDSYSTVRGVDKL-IPVDVYLPGCPPKPESILDAITKLRKKISRE 160
V A T+T G+++ Y + VD+L I V ++ GC +PE+I + IT I +
Sbjct: 162 VAGTNATTVTPGIWNM--YRMLEAVDELPINVGLFGKGCVSQPEAIREQIT--AGAIGLK 217
Query: 161 IHEDQTSSLSSQRENRCFTTNHKFYVERSTHTGNYDQVLFHQ 202
IHED + + C + V+ + H+ ++ F++
Sbjct: 218 IHEDW--GATPMAIHNCLNVADEMDVQVAIHSDTLNEGGFYE 257
>pir||E82169 conserved hypothetical protein VC1698 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94848.1| (AE004247) conserved hypothetical protein [Vibrio cholerae]
Length = 215
Score = 32.1 bits (71), Expect = 6.5
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 69 PRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 128
P ADLIL G+ +++A +LY Q P + + G T G+F+ + T + K
Sbjct: 22 PNVADLILVLGSNDVRVAEHAAKLYHQGLAPYVLFSGGFGRFTQGVFNHNEAETFAAIAK 81
>pir||D70383 hydrogenase (EC 1.18.99.1) (NiFe) 1B small chain precursor -
Aquifex aeolicus
gb|AAC07047.1| (AE000715) hydrogenase small subunit [Aquifex aeolicus]
Length = 349
Score = 32.1 bits (71), Expect = 6.5
Identities = 30/86 (34%), Positives = 41/86 (46%), Gaps = 8/86 (9%)
Query: 60 RYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDS 119
+Y LV SP AD + TV K + ++R E +VIA+G+C GG+
Sbjct: 112 KYVLVVEGSPTPADGGVYC-TVGGKSSVDILR--ETAEHAAFVIAVGSCASWGGIPKASP 168
Query: 120 YST----VRGVDKLIPVDVYLPGCPP 141
T V + K PV V +PGCPP
Sbjct: 169 NPTGAVPVYEIVKDKPV-VNVPGCPP 193
>sp|Q46847|MBHT_ECOLI HYDROGENASE-2 SMALL CHAIN PRECURSOR (NIFE HYDROGENASE)
(MEMBRANE-BOUND HYDROGENASE 2 SMALL SUBUNIT) (HYD2)
pir||C65086 hypothetical protein b2997 - Escherichia coli (strain K-12)
gb|AAA69164.1| (U28377) ORF_f372 [Escherichia coli]
gb|AAC76033.1| (AE000382) putative hydrogenase subunit [Escherichia coli K12]
gb|AAG58134.1|AE005529_12 (AE005529) putative hydrogenase subunit [Escherichia coli O157:H7]
Length = 372
Score = 32.1 bits (71), Expect = 6.5
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 102 VIAMGACTITGGMFSTDSYST-VRGVDKLIP--VDVYLPGCPPKPESILDAITKL 153
+IA+G+C+ GG+ + T + +++P + +PGCPP P + L + +
Sbjct: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205
>dbj|BAB05925.1| (AP001514) oxoglutarate dehydrogenase [Bacillus halodurans]
Length = 945
Score = 31.7 bits (70), Expect = 8.5
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 58 FDRYGLVPRSSPRQADLILTAGTVT----MKMAPSLVRLYEQMPEPKYVIAMGACTITG- 112
F+++G P ++P + TA ++T +K V+L + + ++ A +
Sbjct: 45 FEKWGPPPATAPERTQSTFTAASITDPDVIKKFVGAVKLADHIRAFGHLAADIQPILKEQ 104
Query: 113 ---GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPESILDAITKLRKKISREI 161
MF D + + +PVD+ P P ++ LDAI L++ ++ I
Sbjct: 105 RREDMFDLDRFGLTESDIRSVPVDLLCPYAPAHVKNGLDAINHLKEVYTKTI 156
Database: nr
Posted date: Mar 14, 2001 1:25 PM
Number of letters in database: 201,912,487
Number of sequences in database: 640,428
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93880683
Number of Sequences: 640428
Number of extensions: 3781477
Number of successful extensions: 9342
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9084
Number of HSP's gapped (non-prelim): 146
length of query: 230
length of database: 201,912,487
effective HSP length: 55
effective length of query: 175
effective length of database: 166,688,947
effective search space: 29170565725
effective search space used: 29170565725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 70 (31.7 bits)
Lotus japonicus(Cp)