Result of FASTA (omim) for pF1KB7552
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7552, 268 aa
  1>>>pF1KB7552 268 - 268 aa - 268 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5588+/-0.000349; mu= 7.1757+/- 0.022
 mean_var=280.3659+/-61.545, 0's: 0 Z-trim(122.6): 1730  B-trim: 224 in 2/56
 Lambda= 0.076597
 statistics sampled from 38798 (41041) to 38798 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.481), width:  16
 Scan time:  7.620

The best scores are:                                      opt bits E(85289)
NP_003059 (OMIM: 172800,602150,608890) zinc finger ( 268) 1876 219.9   4e-57
NP_005976 (OMIM: 604238) zinc finger protein SNAI1 ( 264)  903 112.3 9.2e-25
NP_840101 (OMIM: 612741) zinc finger protein SNAI3 ( 292)  837 105.1 1.5e-22
NP_112599 (OMIM: 605858) transcriptional repressor ( 348)  599 78.9 1.4e-14
NP_001166122 (OMIM: 601276) zinc finger protein 17 ( 481)  427 60.1 8.9e-09
XP_016880500 (OMIM: 194524) PREDICTED: zinc finger ( 548)  419 59.3 1.8e-08
XP_016880497 (OMIM: 194524) PREDICTED: zinc finger ( 548)  419 59.3 1.8e-08
XP_016880499 (OMIM: 194524) PREDICTED: zinc finger ( 548)  419 59.3 1.8e-08
XP_016880498 (OMIM: 194524) PREDICTED: zinc finger ( 548)  419 59.3 1.8e-08
NP_001290211 (OMIM: 194524) zinc finger protein 18 ( 548)  419 59.3 1.8e-08
XP_016880495 (OMIM: 194524) PREDICTED: zinc finger ( 549)  419 59.3 1.8e-08
NP_001290210 (OMIM: 194524) zinc finger protein 18 ( 549)  419 59.3 1.8e-08
XP_011522304 (OMIM: 194524) PREDICTED: zinc finger ( 549)  419 59.3 1.8e-08
NP_653281 (OMIM: 194524) zinc finger protein 18 is ( 549)  419 59.3 1.8e-08
XP_016880496 (OMIM: 194524) PREDICTED: zinc finger ( 549)  419 59.3 1.8e-08
XP_005259991 (OMIM: 194542) PREDICTED: zinc finger ( 503)  418 59.1 1.8e-08
XP_016882360 (OMIM: 194542) PREDICTED: zinc finger ( 503)  418 59.1 1.8e-08
XP_011526368 (OMIM: 194542) PREDICTED: zinc finger ( 571)  418 59.2   2e-08
XP_016882359 (OMIM: 194542) PREDICTED: zinc finger ( 583)  418 59.2   2e-08
NP_057348 (OMIM: 194542) zinc finger protein 44 is ( 615)  418 59.3   2e-08
XP_011526366 (OMIM: 194542) PREDICTED: zinc finger ( 616)  418 59.3   2e-08
XP_011526364 (OMIM: 194542) PREDICTED: zinc finger ( 653)  418 59.3 2.1e-08
NP_001157748 (OMIM: 194542) zinc finger protein 44 ( 663)  418 59.3 2.1e-08
NP_001171680 (OMIM: 616454,616468,616469) zinc fin ( 712)  416 59.1 2.6e-08
NP_079017 (OMIM: 616454,616468,616469) zinc finger ( 720)  416 59.1 2.6e-08
NP_003442 (OMIM: 601276) zinc finger protein 177 i ( 321)  406 57.5 3.5e-08
XP_011526674 (OMIM: 611811) PREDICTED: zinc finger ( 434)  407 57.8 3.9e-08
XP_016882728 (OMIM: 194628) PREDICTED: zinc finger ( 390)  406 57.7 3.9e-08
NP_001295198 (OMIM: 194628) zinc finger protein 12 ( 390)  406 57.7 3.9e-08
NP_001008727 (OMIM: 194628) zinc finger protein 12 ( 390)  406 57.7 3.9e-08
XP_011526673 (OMIM: 611811) PREDICTED: zinc finger ( 476)  407 57.9 4.1e-08
XP_016882860 (OMIM: 611811) PREDICTED: zinc finger ( 519)  407 57.9 4.3e-08
XP_011526669 (OMIM: 611811) PREDICTED: zinc finger ( 556)  407 58.0 4.5e-08
XP_016882859 (OMIM: 611811) PREDICTED: zinc finger ( 556)  407 58.0 4.5e-08
XP_011526665 (OMIM: 611811) PREDICTED: zinc finger ( 556)  407 58.0 4.5e-08
XP_016882858 (OMIM: 611811) PREDICTED: zinc finger ( 556)  407 58.0 4.5e-08
XP_011526668 (OMIM: 611811) PREDICTED: zinc finger ( 556)  407 58.0 4.5e-08
XP_011526667 (OMIM: 611811) PREDICTED: zinc finger ( 556)  407 58.0 4.5e-08
XP_005260155 (OMIM: 611811) PREDICTED: zinc finger ( 556)  407 58.0 4.5e-08
XP_011526671 (OMIM: 611811) PREDICTED: zinc finger ( 556)  407 58.0 4.5e-08
XP_011526670 (OMIM: 611811) PREDICTED: zinc finger ( 556)  407 58.0 4.5e-08
NP_597715 (OMIM: 609451) zinc finger protein 90 ho ( 636)  408 58.2 4.5e-08
XP_005255861 (OMIM: 609451) PREDICTED: zinc finger ( 636)  408 58.2 4.5e-08
NP_001292132 (OMIM: 609451) zinc finger protein 90 ( 636)  408 58.2 4.5e-08
XP_016882857 (OMIM: 611811) PREDICTED: zinc finger ( 578)  407 58.0 4.6e-08
XP_016878441 (OMIM: 609451) PREDICTED: zinc finger ( 720)  408 58.2 4.8e-08
XP_011526664 (OMIM: 611811) PREDICTED: zinc finger ( 665)  407 58.1   5e-08
NP_115809 (OMIM: 611811) zinc finger protein 333 i ( 665)  407 58.1   5e-08
XP_016882856 (OMIM: 611811) PREDICTED: zinc finger ( 665)  407 58.1   5e-08
NP_001243583 (OMIM: 603972) zinc finger protein 43 ( 744)  405 57.9 6.2e-08


>>NP_003059 (OMIM: 172800,602150,608890) zinc finger pro  (268 aa)
 initn: 1876 init1: 1876 opt: 1876  Z-score: 1146.6  bits: 219.9 E(85289): 4e-57
Smith-Waterman score: 1876; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KB7 MPRSFLVKKHFNASKKPNYSELDTHTVIISPYLYESYSMPVIPQPEILSSGAYSPITVWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPRSFLVKKHFNASKKPNYSELDTHTVIISPYLYESYSMPVIPQPEILSSGAYSPITVWT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDHSGSESPISDEEERLQSKLSDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDHSGSESPISDEEERLQSKLSDP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 HAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSRKSFSCKYCDKEYVSLGALKMHIRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSRKSFSCKYCDKEYVSLGALKMHIRT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 HTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKK
              190       200       210       220       230       240

              250       260        
pF1KB7 YQCKNCSKTFSRMSLLHKHEESGCCVAH
       ::::::::::::::::::::::::::::
NP_003 YQCKNCSKTFSRMSLLHKHEESGCCVAH
              250       260        

>>NP_005976 (OMIM: 604238) zinc finger protein SNAI1 [Ho  (264 aa)
 initn: 921 init1: 745 opt: 903  Z-score: 565.5  bits: 112.3 E(85289): 9.2e-25
Smith-Waterman score: 903; 54.4% identity (71.5% similar) in 274 aa overlap (1-264:1-259)

               10        20           30        40        50       
pF1KB7 MPRSFLVKKHFNASKKPNYSEL-DTHT--VIISPYLYESYSMPVIPQPEILSSGAYSPIT
       :::::::.:  . ..::::::: :..   .. .::  ... . .:: ::::.  :  :. 
NP_005 MPRSFLVRKPSDPNRKPNYSELQDSNPEFTFQQPY-DQAHLLAAIPPPEILNPTASLPML
               10        20        30         40        50         

        60        70        80        90        100       110      
pF1KB7 VWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPP-SDTSSKDHSGSESPISDEEERLQSK
       .: ..   .:: : . . :    :   ::.     :: .:   :   :: :     ..: 
NP_005 IWDSVLAPQAQ-PIAWASLRLQESP--RVAELTSLSDEDSGKGSQPPSPPSPAPSSFSS-
      60        70         80          90       100       110      

        120       130       140        150            160       170
pF1KB7 LSDPHAIEAEKFQCNLCNKTYSTFSGLAK-HKQLHC-----DAQSRKSFSCKYCDKEYVS
        ..  ..:::         .:..: ::..  :::       : :.::.:.::::.:::.:
NP_005 -TSVSSLEAE---------AYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLS
          120                130       140       150       160     

              180       190       200       210       220       230
pF1KB7 LGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRA
       :::::::::.:::::::  ::::::::::::::.::::::::::::::.:::::::::::
NP_005 LGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRA
         170       180       190       200       210       220     

              240       250       260         
pF1KB7 HLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH 
       :::::::::::::. :..:::::::::::.::::     
NP_005 HLQTHSDVKKYQCQACARTFSRMSLLHKHQESGCSGCPR
         230       240       250       260    

>>NP_840101 (OMIM: 612741) zinc finger protein SNAI3 [Ho  (292 aa)
 initn: 862 init1: 814 opt: 837  Z-score: 525.7  bits: 105.1 E(85289): 1.5e-22
Smith-Waterman score: 879; 51.4% identity (67.7% similar) in 294 aa overlap (1-265:1-289)

               10        20                  30           40       
pF1KB7 MPRSFLVKKHFNASKKPNYSELDTHTVI----------ISPYL---YESYSMPV-IPQPE
       :::::::: : .. . ::: .:.:.  :          . : :    :. :.:  .::: 
NP_840 MPRSFLVKTH-SSHRVPNYRRLETQREINGACSACGGLVVPLLPRDKEAPSVPGDLPQPW
               10         20        30        40        50         

         50        60        70          80        90       100    
pF1KB7 ILSSGAYSPITVWTTAAPFHAQLPNGLSPL--SGYSSSLGRVSPPPPSDTSSKDHSGSES
         :: : . :..       .:   .::. :  :  .   .:..  : .:  : .:  .  
NP_840 DRSS-AVACISLPLLPRIEEALGASGLDALEVSEVDPRASRAAIVPLKD--SLNHL-NLP
      60         70        80        90       100         110      

          110        120                   130       140       150 
pF1KB7 PISDEEERLQSKLS-DPHA-----IEAEK-------FQCNLCNKTYSTFSGLAKHKQLHC
       :.     : .  :. : :.     . ::.       :.:  :.: : :..:::.:.::::
NP_840 PLLVLPTRWSPTLGPDRHGAPEKLLGAERMPRAPGGFECFHCHKPYHTLAGLARHRQLHC
         120       130       140       150       160       170     

             160       170       180       190       200       210 
pF1KB7 DAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEK
         :  . :.::::::::.::::::::::::::::.:::::::::::::::::.:::::::
NP_840 HLQVGRVFTCKYCDKEYTSLGALKMHIRTHTLPCTCKICGKAFSRPWLLQGHVRTHTGEK
         180       190       200       210       220       230     

             220       230       240       250       260        
pF1KB7 PFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
       :..: ::.::::::::::::::::::.:::.:. :.::::::::: .:::::::   
NP_840 PYACSHCSRAFADRSNLRAHLQTHSDAKKYRCRRCTKTFSRMSLLARHEESGCCPGP
         240       250       260       270       280       290  

>>NP_112599 (OMIM: 605858) transcriptional repressor scr  (348 aa)
 initn: 794 init1: 575 opt: 599  Z-score: 382.7  bits: 78.9 E(85289): 1.4e-14
Smith-Waterman score: 599; 58.0% identity (78.3% similar) in 138 aa overlap (127-264:190-327)

        100       110       120       130       140       150      
pF1KB7 KDHSGSESPISDEEERLQSKLSDPHAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSR
                                     .  :. :.:::.: :.:..::: : . .:.
NP_112 LGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQ
     160       170       180       190       200       210         

        160       170       180       190       200       210      
pF1KB7 KSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCP
        .  :  : : :::. :. ::. :: :   : .::::::::::::::.:.:::::::.: 
NP_112 LARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCA
     220       230       240       250       260       270         

        220       230       240       250       260                
pF1KB7 HCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH        
       ::..:::::::::::.::::  :..::: :.:.:.  : :.:: ::.:            
NP_112 HCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPA
     280       290       300       310       320       330         

NP_112 PPQLSPVQA
     340        

>>NP_001166122 (OMIM: 601276) zinc finger protein 177 is  (481 aa)
 initn: 793 init1: 289 opt: 427  Z-score: 278.6  bits: 60.1 E(85289): 8.9e-09
Smith-Waterman score: 427; 34.8% identity (63.7% similar) in 204 aa overlap (68-263:224-420)

        40        50        60        70        80        90       
pF1KB7 SMPVIPQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSK
                                     :.:.: .  .   :. :..::      ...
NP_001 HLRTPTGQKFQEYEQCDMSFSLHSSCSVREQIPTGEK--GDECSDYGKISPLSVHTKTGS
           200       210       220       230         240       250 

       100       110       120           130       140       150   
pF1KB7 DHSGSESPISDEEERLQSKLSDPHAIEAEK----FQCNLCNKTYSTFSGLAKHKQLHCDA
        . : :   ...:. . . ::  . .....    ..:. :.:..   :.: :: . :   
NP_001 VEEGLEC--NEHEKTFTDPLSLQNCVRTHSGEMPYECSDCGKAFIFQSSLKKHMRSHT--
               260       270       280       290       300         

           160       170       180         190       200       210 
pF1KB7 QSRKSFSCKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEK
        ..: . : .: : . . . :..: ::::   :  :: :::::. :  :: :.:::::::
NP_001 -GEKPYECDHCGKSFSQSSHLNVHKRTHTGEKPYDCKECGKAFTVPSSLQKHVRTHTGEK
        310       320       330       340       350       360      

             220       230       240       250         260         
pF1KB7 PFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLL--HKHEESGCCVAH 
       :. :  :..:: :.:.:. : ..:.  : :.:..:.:.::  : :  ::. ..:      
NP_001 PYECSDCGKAFIDQSSLKKHTRSHTGEKPYECNQCGKSFSTGSYLIVHKRTHTGEKTYEC
        370       380       390       400       410       420      

NP_001 KECGKAFRNSSCLRVHVRTHTGEKPYKCIQCEKAFSTSTNLIMHKRIHNGQKLHE
        430       440       450       460       470       480 

>>XP_016880500 (OMIM: 194524) PREDICTED: zinc finger pro  (548 aa)
 initn: 629 init1: 282 opt: 419  Z-score: 273.2  bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)

             50        60        70        80         90       100 
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
                                     :::    : ..::.  : :        :::
XP_016 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
       330       340       350       360       370                 

             110       120        130       140       150       160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
         : .  ::.:  :. ..:.:  :.:.  :  :.::.   : :  :.. :    ..  :.
XP_016 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
     380       390       400       410       420       430         

              170       180         190       200       210        
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
       :  : : ..  . .  : ::::   :: :  :::.::    :. : . ::::::..:: :
XP_016 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
        440       450       460       470       480       490      

      220       230       240       250       260          
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH  
       ...: .:::.  : ..:.  : :.:..:.:.::  : : ::..:        
XP_016 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
        500       510       520       530       540        

>>XP_016880497 (OMIM: 194524) PREDICTED: zinc finger pro  (548 aa)
 initn: 629 init1: 282 opt: 419  Z-score: 273.2  bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)

             50        60        70        80         90       100 
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
                                     :::    : ..::.  : :        :::
XP_016 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
       330       340       350       360       370                 

             110       120        130       140       150       160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
         : .  ::.:  :. ..:.:  :.:.  :  :.::.   : :  :.. :    ..  :.
XP_016 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
     380       390       400       410       420       430         

              170       180         190       200       210        
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
       :  : : ..  . .  : ::::   :: :  :::.::    :. : . ::::::..:: :
XP_016 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
        440       450       460       470       480       490      

      220       230       240       250       260          
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH  
       ...: .:::.  : ..:.  : :.:..:.:.::  : : ::..:        
XP_016 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
        500       510       520       530       540        

>>XP_016880499 (OMIM: 194524) PREDICTED: zinc finger pro  (548 aa)
 initn: 629 init1: 282 opt: 419  Z-score: 273.2  bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)

             50        60        70        80         90       100 
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
                                     :::    : ..::.  : :        :::
XP_016 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
       330       340       350       360       370                 

             110       120        130       140       150       160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
         : .  ::.:  :. ..:.:  :.:.  :  :.::.   : :  :.. :    ..  :.
XP_016 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
     380       390       400       410       420       430         

              170       180         190       200       210        
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
       :  : : ..  . .  : ::::   :: :  :::.::    :. : . ::::::..:: :
XP_016 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
        440       450       460       470       480       490      

      220       230       240       250       260          
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH  
       ...: .:::.  : ..:.  : :.:..:.:.::  : : ::..:        
XP_016 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
        500       510       520       530       540        

>>XP_016880498 (OMIM: 194524) PREDICTED: zinc finger pro  (548 aa)
 initn: 629 init1: 282 opt: 419  Z-score: 273.2  bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)

             50        60        70        80         90       100 
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
                                     :::    : ..::.  : :        :::
XP_016 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
       330       340       350       360       370                 

             110       120        130       140       150       160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
         : .  ::.:  :. ..:.:  :.:.  :  :.::.   : :  :.. :    ..  :.
XP_016 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
     380       390       400       410       420       430         

              170       180         190       200       210        
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
       :  : : ..  . .  : ::::   :: :  :::.::    :. : . ::::::..:: :
XP_016 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
        440       450       460       470       480       490      

      220       230       240       250       260          
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH  
       ...: .:::.  : ..:.  : :.:..:.:.::  : : ::..:        
XP_016 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
        500       510       520       530       540        

>>NP_001290211 (OMIM: 194524) zinc finger protein 18 iso  (548 aa)
 initn: 629 init1: 282 opt: 419  Z-score: 273.2  bits: 59.3 E(85289): 1.8e-08
Smith-Waterman score: 419; 38.1% identity (59.8% similar) in 194 aa overlap (73-262:358-540)

             50        60        70        80         90       100 
pF1KB7 PQPEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYS-SSLGRVSPPPPSDTSSKDHSG
                                     :::    : ..::.  : :        :::
NP_001 FTEDEPGCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNP--------HSG
       330       340       350       360       370                 

             110       120        130       140       150       160
pF1KB7 SESPISDEEERLQSKLSDPHAIEAEKFQ-CNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
         : .  ::.:  :. ..:.:  :.:.  :  :.::.   : :  :.. :    ..  :.
NP_001 EMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHT---GETYFQ
     380       390       400       410       420       430         

              170       180         190       200       210        
pF1KB7 CKYCDKEYVSLGALKMHIRTHT--LPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
       :  : : ..  . .  : ::::   :: :  :::.::    :. : . ::::::..:: :
NP_001 CTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPIC
        440       450       460       470       480       490      

      220       230       240       250       260          
pF1KB7 NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH  
       ...: .:::.  : ..:.  : :.:..:.:.::  : : ::..:        
NP_001 EKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ
        500       510       520       530       540        




268 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:39:33 2016 done: Fri Nov  4 08:39:34 2016
 Total Scan time:  7.620 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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