Result of FASTA (ccds) for pF1KSDA0049
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0049, 966 aa
  1>>>pF1KSDA0049 966 - 966 aa - 966 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3973+/-0.000949; mu= 7.9833+/- 0.058
 mean_var=168.7833+/-33.677, 0's: 0 Z-trim(111.7): 19  B-trim: 0 in 0/50
 Lambda= 0.098721
 statistics sampled from 12598 (12609) to 12598 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.387), width:  16
 Scan time:  4.960

The best scores are:                                      opt bits E(32554)
CCDS45694.1 NBR1 gene_id:4077|Hs108|chr17          ( 966) 6477 935.2       0
CCDS77037.1 NBR1 gene_id:4077|Hs108|chr17          ( 937) 6095 880.7       0
CCDS77038.1 NBR1 gene_id:4077|Hs108|chr17          ( 837) 5386 779.7       0


>>CCDS45694.1 NBR1 gene_id:4077|Hs108|chr17               (966 aa)
 initn: 6477 init1: 6477 opt: 6477  Z-score: 4992.3  bits: 935.2 E(32554):    0
Smith-Waterman score: 6477; 100.0% identity (100.0% similar) in 966 aa overlap (1-966:1-966)

               10        20        30        40        50        60
pF1KSD MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD FAGPPVTAQPIISEDQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FAGPPVTAQPIISEDQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND
              910       920       930       940       950       960

             
pF1KSD WYSQRY
       ::::::
CCDS45 WYSQRY
             

>>CCDS77037.1 NBR1 gene_id:4077|Hs108|chr17               (937 aa)
 initn: 6095 init1: 6095 opt: 6095  Z-score: 4698.5  bits: 880.7 E(32554):    0
Smith-Waterman score: 6095; 100.0% identity (100.0% similar) in 909 aa overlap (1-909:1-909)

               10        20        30        40        50        60
pF1KSD MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD FAGPPVTAQPIISEDQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND
       :::::::::                                                   
CCDS77 FAGPPVTAQGLWGLLSFLHLAKKCFFLKAPSEAFSWF                       
              910       920       930                              

>>CCDS77038.1 NBR1 gene_id:4077|Hs108|chr17               (837 aa)
 initn: 5386 init1: 5386 opt: 5386  Z-score: 4153.5  bits: 779.7 E(32554):    0
Smith-Waterman score: 5555; 97.5% identity (97.5% similar) in 854 aa overlap (1-854:1-833)

               10        20        30        40        50        60
pF1KSD MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
       :::::::::::::::::::::::::::::::::::                     ::::
CCDS77 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMV---------------------SINS
               10        20        30                              

               70        80        90       100       110       120
pF1KSD QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
      40        50        60        70        80        90         

              130       140       150       160       170       180
pF1KSD LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
     100       110       120       130       140       150         

              190       200       210       220       230       240
pF1KSD LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
     160       170       180       190       200       210         

              250       260       270       280       290       300
pF1KSD EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
     220       230       240       250       260       270         

              310       320       330       340       350       360
pF1KSD EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
     280       290       300       310       320       330         

              370       380       390       400       410       420
pF1KSD LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
     340       350       360       370       380       390         

              430       440       450       460       470       480
pF1KSD LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
     400       410       420       430       440       450         

              490       500       510       520       530       540
pF1KSD FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
     460       470       480       490       500       510         

              550       560       570       580       590       600
pF1KSD VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
     520       530       540       550       560       570         

              610       620       630       640       650       660
pF1KSD KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
     580       590       600       610       620       630         

              670       680       690       700       710       720
pF1KSD AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
     640       650       660       670       680       690         

              730       740       750       760       770       780
pF1KSD VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
     700       710       720       730       740       750         

              790       800       810       820       830       840
pF1KSD ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
     760       770       780       790       800       810         

              850       860       870       880       890       900
pF1KSD TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
       ::::::::::::::                                              
CCDS77 TIPEVSSVPDQIRGANNF                                          
     820       830                                                 




966 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:38:06 2016 done: Wed Nov  2 23:38:07 2016
 Total Scan time:  4.960 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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