FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3940, 148 aa 1>>>pF1KE3940 148 - 148 aa - 148 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0130+/-0.000414; mu= 12.7527+/- 0.026 mean_var=57.7589+/-12.137, 0's: 0 Z-trim(111.0): 15 B-trim: 941 in 1/50 Lambda= 0.168758 statistics sampled from 19413 (19423) to 19413 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.228), width: 16 Scan time: 4.740 The best scores are: opt bits E(85289) NP_001243441 (OMIM: 600439) single-stranded DNA-bi ( 148) 963 242.6 1.7e-64 NP_003134 (OMIM: 600439) single-stranded DNA-bindi ( 148) 963 242.6 1.7e-64 NP_001243439 (OMIM: 600439) single-stranded DNA-bi ( 148) 963 242.6 1.7e-64 NP_001243440 (OMIM: 600439) single-stranded DNA-bi ( 148) 963 242.6 1.7e-64 NP_001243442 (OMIM: 600439) single-stranded DNA-bi ( 148) 963 242.6 1.7e-64 XP_005250108 (OMIM: 600439) PREDICTED: single-stra ( 159) 876 221.5 4.3e-58 XP_005250106 (OMIM: 600439) PREDICTED: single-stra ( 159) 876 221.5 4.3e-58 XP_005250105 (OMIM: 600439) PREDICTED: single-stra ( 159) 876 221.5 4.3e-58 XP_005250107 (OMIM: 600439) PREDICTED: single-stra ( 159) 876 221.5 4.3e-58 >>NP_001243441 (OMIM: 600439) single-stranded DNA-bindin (148 aa) initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::::::::::::::::: NP_001 DKNNVRRQATTIIADNIIFLSDQTKEKE 130 140 >>NP_003134 (OMIM: 600439) single-stranded DNA-binding p (148 aa) initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::::::::::::::::: NP_003 DKNNVRRQATTIIADNIIFLSDQTKEKE 130 140 >>NP_001243439 (OMIM: 600439) single-stranded DNA-bindin (148 aa) initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::::::::::::::::: NP_001 DKNNVRRQATTIIADNIIFLSDQTKEKE 130 140 >>NP_001243440 (OMIM: 600439) single-stranded DNA-bindin (148 aa) initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::::::::::::::::: NP_001 DKNNVRRQATTIIADNIIFLSDQTKEKE 130 140 >>NP_001243442 (OMIM: 600439) single-stranded DNA-bindin (148 aa) initn: 963 init1: 963 opt: 963 Z-score: 1278.9 bits: 242.6 E(85289): 1.7e-64 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::::::::::::::::: NP_001 DKNNVRRQATTIIADNIIFLSDQTKEKE 130 140 >>XP_005250108 (OMIM: 600439) PREDICTED: single-stranded (159 aa) initn: 876 init1: 876 opt: 876 Z-score: 1164.0 bits: 221.5 E(85289): 4.3e-58 Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::: XP_005 DKNNVRRQATTIIAGKKLVKIAVFFFFSFSFLKAWLHCN 130 140 150 >>XP_005250106 (OMIM: 600439) PREDICTED: single-stranded (159 aa) initn: 876 init1: 876 opt: 876 Z-score: 1164.0 bits: 221.5 E(85289): 4.3e-58 Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::: XP_005 DKNNVRRQATTIIAGKKLVKIAVFFFFSFSFLKAWLHCN 130 140 150 >>XP_005250105 (OMIM: 600439) PREDICTED: single-stranded (159 aa) initn: 876 init1: 876 opt: 876 Z-score: 1164.0 bits: 221.5 E(85289): 4.3e-58 Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::: XP_005 DKNNVRRQATTIIAGKKLVKIAVFFFFSFSFLKAWLHCN 130 140 150 >>XP_005250107 (OMIM: 600439) PREDICTED: single-stranded (159 aa) initn: 876 init1: 876 opt: 876 Z-score: 1164.0 bits: 221.5 E(85289): 4.3e-58 Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::: XP_005 DKNNVRRQATTIIAGKKLVKIAVFFFFSFSFLKAWLHCN 130 140 150 148 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:45:37 2016 done: Sun Nov 6 08:45:38 2016 Total Scan time: 4.740 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]