FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3940, 148 aa 1>>>pF1KE3940 148 - 148 aa - 148 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0976+/-0.000887; mu= 12.3523+/- 0.053 mean_var=55.6887+/-11.094, 0's: 0 Z-trim(104.3): 9 B-trim: 0 in 0/49 Lambda= 0.171866 statistics sampled from 7839 (7841) to 7839 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.241), width: 16 Scan time: 1.660 The best scores are: opt bits E(32554) CCDS5866.1 SSBP1 gene_id:6742|Hs108|chr7 ( 148) 963 246.7 3.9e-66 >>CCDS5866.1 SSBP1 gene_id:6742|Hs108|chr7 (148 aa) initn: 963 init1: 963 opt: 963 Z-score: 1300.9 bits: 246.7 E(32554): 3.9e-66 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148) 10 20 30 40 50 60 pF1KE3 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 70 80 90 100 110 120 130 140 pF1KE3 DKNNVRRQATTIIADNIIFLSDQTKEKE :::::::::::::::::::::::::::: CCDS58 DKNNVRRQATTIIADNIIFLSDQTKEKE 130 140 148 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:45:37 2016 done: Sun Nov 6 08:45:37 2016 Total Scan time: 1.660 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]