information on L73G19    (5435..6901)

Direction: +

Frame: 2

ORF

    5177..6934  (Met: 5189 5198 5210 5432 5641 5840 5901 6068 6134 6146 6343 6494 6733 6902 5579 5587 5595 5624 5686 5763 5843 5857 5925 6005 6031 6063 6302 6361 6369 6515 6544 6570 6725 6802 6807)
WLGFMLNMESLMNGLLCSGSGGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDR
GGRGRGRGPPRGGARGGRGPAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPG
EAVYNEKRISVQVL*D*N*DGLYLHSF*NLFLMVLVIESAERRWNQD*TEFGILSVRSWL
LLFLVVLITSGL*ISLCESYCCCLRDLVHILIVVPVSM*TWC*FYTLVLLLEPQSLMCLI
LLAL*RTRPLCCDYQVLDVYWSFLYIAFVI*GGVCVRG*FLIEVVEIW*MAKKRTNVIPI
IEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFFCLTHNECLNICLKKLDPIPLYVSFALK
WCFDNCK*ILLGFPFRSLWVMQSPSF*Y*ILVFVFVKLNLILLCTCFTISFLRTILNLNV
YYCSVLVLLMLNLLVF*AIQLVGCF*YFILFCL*FSVPFKTVQARILALNASYFLKSGGH
FVISIKVGSNRNIYLIHDLSREKD*NMYCLIFAGKLYRLHRSSRSCVPD**KLQQEQFKP
AEQVTLEPFERDHACVVGGYRMPKKPKAATAA

GenBank annotation

    4971..6937    L73G19.10

BLASTX cluster

    5432..6904    cluster 1    25 hits for protein gene

BLASTN cluster

    4914..5460    cluster 1    2 hits for EST
    6041..6830    cluster 2    1 hits for EST

GENSCAN

    3355..6934    gene model 1

Grail

    5198..5581    exon    Phase: 0    Score: 95
    5666..5761    exon    Phase: 0    Score: 89
    5846..5968    exon    Phase: 0    Score: 89
    6011..6187    exon    Phase: 0    Score: 89
    6602..6670    exon    Phase: 0    Score: 60
    6755..6937    exon    Phase: 0    Score: 90

Exon-Intron boundary candidatates

Acceptor
5232 [0.96N/0.989] (1) 5236 [0.025] (2) 5251 [0.026] (2) 5260 [0.006] (2)
5278 [0.003] (2) 5287 [0.001] (2) 5329 [0.002] (2) 5371 [0.004] (2)
5495 [0.002] (0) 5573 [0.003] (0) 5666 [0.97N/0.378] (0) 5673 [0.002] (1)
5695 [0.002] (2) 5846 [0.90N/0.011] (0) 5960 [0.048] (0) 6011 [0.96N/0.275] (0)
6014 [0.002] (0) 6055 [0.87N/0.002] (2) 6133 [0.002] (2) 6144 [0.006] (1)
6179 [0.001] (0) 6330 [0.004] (1) 6398 [0.001] (0) 6445 [0.003] (2)
6602 [0.96N/0.646] (0) 6645 [0.005] (1) 6671 [0.002] (0) 6755 [1.00N/0.987] (0)
6783 [0.002] (1) 6786 [0.003] (1) 6800 [0.003] (0) 6824 [0.013] (0)
Donor
5178 [0.009] (2) 5449 [0.054] (0) 5495 [0.107] (1) 5572 [0.93N/0.866] (0)
5603 [0.74N/0.192] (1) 5761 [0.96N/0.252] (0) 5775 [0.008] (2) 5923 [0.99N/0.726] (0)
5936 [0.006] (1) 5948 [0.005] (1) 5959 [0.069] (0) 6139 [0.004] (0)
6148 [0.026] (0) 6187 [1.00N/0.709] (0) 6364 [0.040] (0) 6639 [0.012] (2)
6670 [1.00N/0.217] (0) 6674 [0.007] (1) 6899 [0.091] (1)

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