information on F12F1    (5979..5752)

Direction: -

Frame: 3

ORF

    6207..5338  (Met: 6084 5958 5814 5808 5625 5616 5346)
CHSSLDKAAIRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLT
TLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPL
QRIGLGLFFGSMAMAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIY
TGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADDLNKGR
LYNFYWLVAVLVALNFLIFLVFSKWYVYKEKRLAEVGIELDDEPSIPMGH

GenBank annotation

    9284..5335    F12F1.1

BLASTX cluster

    9284..5338    cluster 1    10 hits for protein gene

BLASTN cluster

    None

GENSCAN

    9284..4045    gene model 1

Grail

    6113..5335    exon    Phase: 1    Score: 89
    6199..5335    exon    Phase: 2    Score: 30

Exon-Intron boundary candidatates

Acceptor
5400 [0.020] (0) 5426 [0.018] (1) 5566 [0.111] (2) 5579 [0.003] (1)
5627 [0.003] (1) 5658 [0.002] (0) 5663 [0.076] (1) 5951 [0.002] (1)
6017 [0.005] (1) 6113 [0.007] (1) 6168 [0.024] (0) 6175 [0.002] (2)
6182 [0.173] (1) 6186 [0.142] (0) 6191 [0.342] (1) 6199 [1.00N/0.933] (2)
Donor
5343 [0.051] (1) 5355 [0.007] (1) 5383 [0.005] (0) 5414 [0.046] (2)
5461 [0.007] (0) 5607 [0.010] (1) 5628 [0.335] (1) 5726 [0.004] (2)

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