hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080909/iprscan-20080909-09491003/chunk_1/iprscan-20080909-09491003.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2033 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 555.9 3.7e-164 19 PF00096.16.fs Zinc finger, C2H2 type 518.5 6.8e-153 19 PF01096.9.fs Transcription factor S-II (TFIIS) 114.6 8.8e-35 17 PF01352.17.fs KRAB box 103.2 1e-28 1 PF01352.17.ls KRAB box 105.2 1.8e-28 1 PF01286.9.fs XPA protein N-terminal 96.1 1.2e-26 16 PF02892.5.fs BED zinc finger 52.4 8.9e-15 11 PF07754.2.fs Domain of unknown function (DUF1610) 54.1 1.7e-13 15 PF07754.2.ls Domain of unknown function (DUF1610) 45.6 1.6e-10 10 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 32.7 8.8e-10 16 PF00569.8.fs Zinc finger, ZZ type 25.2 3.5e-06 12 PF08792.1.fs A2L zinc ribbon domain 21.1 0.00014 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 28 68 .. 1 41 [] 103.2 1e-28 PF01352.17.ls 1/1 28 68 .. 1 41 [] 105.2 1.8e-28 PF00096.16.ls 1/19 235 257 .. 1 24 [] 18.2 0.027 PF00096.16.ls 2/19 262 284 .. 1 24 [] 19.4 0.012 PF00096.16.fs 3/19 290 312 .. 1 24 [] 29.7 3.7e-06 PF00096.16.ls 3/19 290 312 .. 1 24 [] 31.7 2.4e-06 PF00096.16.ls 4/19 318 340 .. 1 24 [] 23.6 0.00063 PF00096.16.ls 5/19 346 368 .. 1 24 [] 30.1 7.1e-06 PF00096.16.fs 5/19 346 368 .. 1 24 [] 28.1 9.1e-06 PF00096.16.fs 6/19 374 396 .. 1 24 [] 27.3 1.4e-05 PF00096.16.ls 6/19 374 396 .. 1 24 [] 29.3 1.2e-05 PF00096.16.fs 7/19 402 424 .. 1 24 [] 29.6 4e-06 PF00096.16.ls 7/19 402 424 .. 1 24 [] 31.6 2.6e-06 PF00096.16.ls 8/19 430 452 .. 1 24 [] 31.5 2.7e-06 PF00096.16.fs 8/19 430 452 .. 1 24 [] 29.5 4.1e-06 PF00096.16.fs 9/19 458 480 .. 1 24 [] 30.4 2.5e-06 PF00096.16.ls 9/19 458 480 .. 1 24 [] 32.4 1.5e-06 PF00096.16.ls 10/19 486 508 .. 1 24 [] 37.5 4.2e-08 PF00096.16.fs 10/19 486 508 .. 1 24 [] 35.6 1.3e-07 PF00096.16.ls 11/19 514 536 .. 1 24 [] 30.5 5.4e-06 PF00096.16.fs 11/19 514 536 .. 1 24 [] 28.5 7.3e-06 PF00096.16.fs 12/19 542 564 .. 1 24 [] 26.3 2.6e-05 PF00096.16.ls 12/19 542 564 .. 1 24 [] 28.3 2.5e-05 PF00096.16.ls 13/19 570 592 .. 1 24 [] 33.5 6.8e-07 PF00096.16.fs 13/19 570 592 .. 1 24 [] 31.5 1.3e-06 PF00096.16.ls 14/19 598 620 .. 1 24 [] 18.9 0.017 PF00096.16.ls 15/19 626 648 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 15/19 626 648 .. 1 24 [] 30.2 2.9e-06 PF00096.16.ls 16/19 654 676 .. 1 24 [] 35.3 2e-07 PF00096.16.fs 16/19 654 676 .. 1 24 [] 33.3 4.7e-07 PF00096.16.ls 17/19 682 704 .. 1 24 [] 27.8 3.7e-05 PF00096.16.fs 17/19 682 704 .. 1 24 [] 25.8 3.5e-05 PF00096.16.fs 18/19 710 732 .. 1 24 [] 27.5 1.3e-05 PF00096.16.ls 18/19 710 732 .. 1 24 [] 29.5 1.1e-05 PF00096.16.fs 19/19 738 760 .. 1 24 [] 32.8 6.4e-07 PF00096.16.ls 19/19 738 760 .. 1 24 [] 34.7 2.9e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 28 to 68: score 103.2, E = 1e-28 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+qEEW++LdpaQr+LYrdVMlENy+nLvSl+ KIAA2033 28 LTFRDVAIEFSQEEWKCLDPAQRTLYRDVMLENYRNLVSLD 68 PF01352.17.ls: domain 1 of 1, from 28 to 68: score 105.2, E = 1.8e-28 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+qEEW++LdpaQr+LYrdVMlENy+nLvSl+ KIAA2033 28 LTFRDVAIEFSQEEWKCLDPAQRTLYRDVMLENYRNLVSLD 68 PF00096.16.ls: domain 1 of 19, from 235 to 257: score 18.2, E = 0.027 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ + gk+F+ +s L++H+ +H KIAA2033 235 FQCN-ESGKAFNYSSLLRKHQIIH 257 PF00096.16.ls: domain 2 of 19, from 262 to 284: score 19.4, E = 0.012 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F++k nL H+r H KIAA2033 262 YKCD-VCGKLFNQKRNLACHRRCH 284 PF00096.16.fs: domain 3 of 19, from 290 to 312: score 29.7, E = 3.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s+L+ H+r H KIAA2033 290 YKCN-ECGKTFSQTSSLTCHRRLH 312 PF00096.16.ls: domain 3 of 19, from 290 to 312: score 31.7, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ s+L+ H+r H KIAA2033 290 YKCN-ECGKTFSQTSSLTCHRRLH 312 PF00096.16.ls: domain 4 of 19, from 318 to 340: score 23.6, E = 0.00063 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F ks L+rH+ +H KIAA2033 318 YKCE-ECDKAFHFKSILERHRIIH 340 PF00096.16.ls: domain 5 of 19, from 346 to 368: score 30.1, E = 7.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ks L+rH r H KIAA2033 346 YKCN-ECGKTFRQKSILTRHHRLH 368 PF00096.16.fs: domain 5 of 19, from 346 to 368: score 28.1, E = 9.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ks L+rH r H KIAA2033 346 YKCN-ECGKTFRQKSILTRHHRLH 368 PF00096.16.fs: domain 6 of 19, from 374 to 396: score 27.3, E = 1.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks+L+ H r H KIAA2033 374 YKCN-ECGKTFSHKSSLTCHHRLH 396 PF00096.16.ls: domain 6 of 19, from 374 to 396: score 29.3, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks+L+ H r H KIAA2033 374 YKCN-ECGKTFSHKSSLTCHHRLH 396 PF00096.16.fs: domain 7 of 19, from 402 to 424: score 29.6, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks+L+ H+r H KIAA2033 402 YKCN-ECGKTFSHKSSLTCHRRLH 424 PF00096.16.ls: domain 7 of 19, from 402 to 424: score 31.6, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ks+L+ H+r H KIAA2033 402 YKCN-ECGKTFSHKSSLTCHRRLH 424 PF00096.16.ls: domain 8 of 19, from 430 to 452: score 31.5, E = 2.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k++s +sn++ H+++H KIAA2033 430 YKCE-ECDKAYSFRSNFEIHRKIH 452 PF00096.16.fs: domain 8 of 19, from 430 to 452: score 29.5, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k++s +sn++ H+++H KIAA2033 430 YKCE-ECDKAYSFRSNFEIHRKIH 452 PF00096.16.fs: domain 9 of 19, from 458 to 480: score 30.4, E = 2.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr s+L+ H+r+H KIAA2033 458 YKCN-ECGKTFSRTSSLTCHRRRH 480 PF00096.16.ls: domain 9 of 19, from 458 to 480: score 32.4, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr s+L+ H+r+H KIAA2033 458 YKCN-ECGKTFSRTSSLTCHRRRH 480 PF00096.16.ls: domain 10 of 19, from 486 to 508: score 37.5, E = 4.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+ ksnL+rH+r+H KIAA2033 486 YKCE-ECDKAFRFKSNLERHRRIH 508 PF00096.16.fs: domain 10 of 19, from 486 to 508: score 35.6, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+ ksnL+rH+r+H KIAA2033 486 YKCE-ECDKAFRFKSNLERHRRIH 508 PF00096.16.ls: domain 11 of 19, from 514 to 536: score 30.5, E = 5.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsrks L+ H r H KIAA2033 514 YKCN-ECGKTFSRKSYLTCHHRLH 536 PF00096.16.fs: domain 11 of 19, from 514 to 536: score 28.5, E = 7.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsrks L+ H r H KIAA2033 514 YKCN-ECGKTFSRKSYLTCHHRLH 536 PF00096.16.fs: domain 12 of 19, from 542 to 564: score 26.3, E = 2.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+Fs ks+L+ H+r H KIAA2033 542 YKCN-ECSKTFSWKSSLTCHRRLH 564 PF00096.16.ls: domain 12 of 19, from 542 to 564: score 28.3, E = 2.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+Fs ks+L+ H+r H KIAA2033 542 YKCN-ECSKTFSWKSSLTCHRRLH 564 PF00096.16.ls: domain 13 of 19, from 570 to 592: score 33.5, E = 6.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++ +LkrH+r H KIAA2033 570 YKCK-ECGKTFNQQLTLKRHRRLH 592 PF00096.16.fs: domain 13 of 19, from 570 to 592: score 31.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++ +LkrH+r H KIAA2033 570 YKCK-ECGKTFNQQLTLKRHRRLH 592 PF00096.16.ls: domain 14 of 19, from 598 to 620: score 18.9, E = 0.017 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ d +k++s ksnL+ H+++H KIAA2033 598 YKCE-DSDKAYSFKSNLEIHQKIH 620 PF00096.16.ls: domain 15 of 19, from 626 to 648: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr s+L+ H+r H KIAA2033 626 YKCN-ECGKTFSRTSSLTCHRRLH 648 PF00096.16.fs: domain 15 of 19, from 626 to 648: score 30.2, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsr s+L+ H+r H KIAA2033 626 YKCN-ECGKTFSRTSSLTCHRRLH 648 PF00096.16.ls: domain 16 of 19, from 654 to 676: score 35.3, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+ ksnL+ H+r+H KIAA2033 654 YKCE-ECDKAFRVKSNLEGHRRIH 676 PF00096.16.fs: domain 16 of 19, from 654 to 676: score 33.3, E = 4.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+ ksnL+ H+r+H KIAA2033 654 YKCE-ECDKAFRVKSNLEGHRRIH 676 PF00096.16.ls: domain 17 of 19, from 682 to 704: score 27.8, E = 3.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsrks + H r H KIAA2033 682 YKCN-ECGKTFSRKSYFVCHHRLH 704 PF00096.16.fs: domain 17 of 19, from 682 to 704: score 25.8, E = 3.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fsrks + H r H KIAA2033 682 YKCN-ECGKTFSRKSYFVCHHRLH 704 PF00096.16.fs: domain 18 of 19, from 710 to 732: score 27.5, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs+ks+L H r H KIAA2033 710 YKCN-ECGKNFSQKSSLICHHRLH 732 PF00096.16.ls: domain 18 of 19, from 710 to 732: score 29.5, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk Fs+ks+L H r H KIAA2033 710 YKCN-ECGKNFSQKSSLICHHRLH 732 PF00096.16.fs: domain 19 of 19, from 738 to 760: score 32.8, E = 6.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ksnL+ H+r H KIAA2033 738 YKCN-ECGKTFSQKSNLTCHRRLH 760 PF00096.16.ls: domain 19 of 19, from 738 to 760: score 34.7, E = 2.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs+ksnL+ H+r H KIAA2033 738 YKCN-ECGKTFSQKSNLTCHRRLH 760 //