hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-19242015/chunk_1/iprscan-20080502-19242015.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2021 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00025 48.2 1.1e-09 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00025 1/6 201 232 .. 1 39 [] 7.5 49 SM00025 2/6 275 310 .. 1 39 [] 3.2 1.8e+02 SM00025 3/6 326 361 .. 1 39 [] 6.6 65 SM00025 4/6 363 399 .. 1 39 [] 12.9 9.6 SM00025 5/6 521 558 .. 1 39 [] 6.2 73 SM00025 6/6 559 594 .. 1 39 [] 11.7 14 Alignments of top-scoring domains: SM00025: domain 1 of 6, from 201 to 232: score 7.5, E = 49 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* e+ +++l ++ d +G++V+ +ll+++ i++ KIAA2021 201 EVCDDFLVYCGDTHGSFVVRTLLQVLGGT-------ILE 232 SM00025: domain 2 of 6, from 275 to 310: score 3.2, E = 1.8e+02 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* ++ +++ +++d+ +++ +Q +l++++ + +++ + KIAA2021 275 SFLKDIAVFITDKISSFCLQVALQVLHRK---LPQFCAH 310 SM00025: domain 3 of 6, from 326 to 361: score 6.6, E = 65 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* ll + dq ++r+++++l ++ ++ ++ +++ KIAA2021 326 VDGSPLLLFLRDQTSSRLLEQVLLVLEPP---RLQSLFE 361 SM00025: domain 4 of 6, from 363 to 399: score 12.9, E = 9.6 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* ++g+l++L+ ++ +n+ +Q+ll+ + +e + ++ KIAA2021 363 HLQGQLQTLAAHPIANFPLQRLLDAVTTPE--LLSPVFE 399 SM00025: domain 5 of 6, from 521 to 558: score 6.2, E = 73 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* + ++ll+L++ + G++V+ +l s+ + + ++ KIAA2021 521 LTGPQLLSLAQSPAGSHVLDAILTSPSVTRK-LRRRVLQ 558 SM00025: domain 6 of 6, from 559 to 594: score 11.7, E = 14 *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-* +kg+ + L++ ++G+rV+ ++ a + ++ei KIAA2021 559 NLKGQYVALACSRHGSRVLDAIWSGAALR---ARKEIAA 594 //