hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19242015/chunk_1/iprscan-20080502-19242015.nocrc
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Query sequence: KIAA2021
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00806.9.fs Pumilio-family RNA binding repeat               33.9    2.6e-09   6
PF00806.9.ls Pumilio-family RNA binding repeat               41.6    2.6e-09   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00806.9.ls   1/6     104   135 ..     1    35 []     3.2      2.5
PF00806.9.ls   2/6     201   235 ..     1    35 []     6.4     0.93
PF00806.9.ls   3/6     325   360 ..     1    35 []     2.3      3.4
PF00806.9.ls   4/6     363   398 ..     1    35 []    12.8     0.13
PF00806.9.ls   5/6     521   556 ..     1    35 []     9.2      0.4
PF00806.9.ls   6/6     559   593 ..     1    35 []     7.7     0.63

Alignments of top-scoring domains:
PF00806.9.ls: domain 1 of 6, from 104 to 135: score 3.2, E = 2.5
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                      + +++ + Lst++ G+  lQ ll +++   +++++   
    KIAA2021   104    EVETQALALSTNRTGSEMLQELLGFSP---LKPLC    135  

PF00806.9.ls: domain 2 of 6, from 201 to 235: score 6.4, E = 0.93
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                      +  + +++++ d +G++v+++ll+v+  +++++     
    KIAA2021   201    EVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESER    235  

PF00806.9.ls: domain 3 of 6, from 325 to 360: score 2.3, E = 3.4
                   *->sikgnlvqLst.dqyGnyvlQkllevatpeqiqlil<-*
                      s +g+ + L ++dq  +++l+++l v+ p+ +q+++   
    KIAA2021   325    SVDGSPLLLFLrDQTSSRLLEQVLLVLEPPRLQSLF    360  

PF00806.9.ls: domain 4 of 6, from 363 to 398: score 12.8, E = 0.13
                   *->sikgnlvqLstdqyGnyvlQkllevat.peqiqlil<-*
                       ++g+l++L+ ++ +n+ lQ+ll+  t+pe +++++   
    KIAA2021   363    HLQGQLQTLAAHPIANFPLQRLLDAVTtPELLSPVF    398  

PF00806.9.ls: domain 5 of 6, from 521 to 556: score 9.2, E = 0.4
                   *->sikgnlvqLstdqyGnyvlQkllevat.peqiqlil<-*
                       + ++l++L++ + G++vl  +l+  + + ++++ +   
    KIAA2021   521    LTGPQLLSLAQSPAGSHVLDAILTSPSvTRKLRRRV    556  

PF00806.9.ls: domain 6 of 6, from 559 to 593: score 7.7, E = 0.63
                   *->sikgnlvqLstdqyGnyvlQkllevatpeqiqlil<-*
                       +kg+ v L++ ++G++vl  ++  a+   ++ i    
    KIAA2021   559    NLKGQYVALACSRHGSRVLDAIWSGAALRARKEIA    593  

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