hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19063943/chunk_1/iprscan-20080502-19063943.nocrc
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Query sequence: KIAA2011
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00222                                                 264.8    6.8e-75   1
SM00233                                                  60.9    1.7e-13   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00222     1/1     586   775 ..     1   226 []   264.8  6.8e-75
SM00233     1/1     824   938 ..     1    82 []    60.9  1.7e-13

Alignments of top-scoring domains:
SM00222: domain 1 of 1, from 586 to 775: score 264.8, E = 6.8e-75
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                          ++l+s +++++  + + ++ ++++ + ++k++++ +q +Ak l
    KIAA2011   586    EPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRL 632  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   y          +  g+ k+ ++++Lg+ +++f++lv  +++++f F+g+ 
    KIAA2011   633 Y----------RLDGFRKADVARHLGK-NNDFSKLVAGEYLKFFVFTGMT 671  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   ld+ALR fL+ ++L+GE+Q+++R+l +Fs+rY++cNp+ +s         
    KIAA2011   672 LDQALRVFLKELALMGETQERERVLAHFSQRYFQCNPEALS--------- 712  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       + D+a++L+++l++LNTDLH++n++k        +Mt+ dFi+Nl+
    KIAA2011   713 ----SEDGAHTLTCALMLLNTDLHGHNIGK--------RMTCGDFIGNLE 750  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g+n    dg+d+pre+L++lY sIkn+++   
    KIAA2011   751 GLN----DGGDFPRELLKALYSSIKNEKL    775  

SM00233: domain 1 of 1, from 824 to 938: score 60.9, E = 1.7e-13
                   *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk..
                      v k+G L +k + +++ ++++++k++wk  + +L++  L++ k++ +
    KIAA2011   824    VYKHGALVRKVhadpdcrktprgKrGWKSFHGILKGMILYLQKEEyk 870  

                   ........kpkgsipLsgcsvre.p.......cFeivt.dr.tlllqAes
                   +++  +++++k  i++ ++  ++  + ++++++F+++t d++++l+qA+s
    KIAA2011   871 pgkalsetELKNAISIHHALATRaSdyskrphVFYLRTaDWrVFLFQAPS 920  

                   eeereeWvealqsaiaka<-*
                    e++++W++ ++ ++a     
    KIAA2011   921 LEQMQSWITRINVVAAMF    938  

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