hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-19000875/chunk_1/iprscan-20080502-19000875.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2007 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 342.4 2.9e-98 13 SM00349 127.3 1.6e-33 1 SM00614 26.8 0.0029 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 3 63 .. 1 62 [] 127.3 1.6e-33 SM00355 1/13 187 209 .. 1 23 [] 10.0 23 SM00355 2/13 243 265 .. 1 23 [] 27.9 0.0014 SM00355 3/13 271 293 .. 1 23 [] 27.4 0.0019 SM00355 4/13 299 321 .. 1 23 [] 26.8 0.003 SM00355 5/13 327 349 .. 1 23 [] 30.0 0.00033 SM00614 1/2 340 380 .. 1 57 [] 12.7 0.12 SM00355 6/13 355 377 .. 1 23 [] 27.6 0.0018 SM00355 7/13 383 405 .. 1 23 [] 29.8 0.00038 SM00355 8/13 411 433 .. 1 23 [] 28.2 0.0011 SM00355 9/13 439 461 .. 1 23 [] 21.1 0.16 SM00614 2/2 452 492 .. 1 57 [] 14.1 0.087 SM00355 10/13 467 489 .. 1 23 [] 30.7 0.0002 SM00355 11/13 495 517 .. 1 23 [] 23.4 0.031 SM00355 12/13 523 545 .. 1 23 [] 29.1 0.00061 SM00355 13/13 551 573 .. 1 23 [] 30.5 0.00024 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 3 to 63: score 127.3, E = 1.6e-33 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtF+D AVdF++EEW +LDp+QrnLYRdVMlENY+nL+ +G +q+ k KIAA2007 3 VTFDDLAVDFTPEEWTLLDPTQRNLYRDVMLENYKNLATVG-YQLFK 48 pdliskLEqgeEpwi<-* p lis+LEq+e + KIAA2007 49 PSLISWLEQEESRTV 63 SM00355: domain 1 of 13, from 187 to 209: score 10.0, E = 23 *->ykCpigCgksfssk.aLkrHmrvH<-* + C+ gksf ++++L+ H+r+H KIAA2007 187 FDCSD-SGKSFINHsHLQGHLRTH 209 SM00355: domain 2 of 13, from 243 to 265: score 27.9, E = 0.0014 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+ L+ Hm +H KIAA2007 243 YKCKE-CGKGFRYSaYLNIHMGTH 265 SM00355: domain 3 of 13, from 271 to 293: score 27.4, E = 0.0019 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ +L++H ++H KIAA2007 271 YECKE-CGKAFTRScQLTQHRKTH 293 SM00355: domain 4 of 13, from 299 to 321: score 26.8, E = 0.003 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cg+ f+ + L +Hm++H KIAA2007 299 YKCKD-CGRAFTVSsCLSQHMKIH 321 SM00355: domain 5 of 13, from 327 to 349: score 30.0, E = 0.00033 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg f++ ++L++H+++H KIAA2007 327 YECKE-CGIAFTRSsQLTEHLKTH 349 SM00614: domain 1 of 2, from 340 to 380: score 12.7, E = 0.12 *->kkrSkvWkhFtkiekkdngkrvetrAkCkyCgkklsysskgGTsnLr ++ ++ k +t k+ +Ck+Cgk++ s s+L KIAA2007 340 SQLTEHLKTHTA--KDP--------FECKICGKSFRNS-----SCLS 371 rHLrrkHpar<-* H r +H + KIAA2007 372 DHFR-IHTGI 380 SM00355: domain 6 of 13, from 355 to 377: score 27.6, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+i Cgksf++ + L H r+H KIAA2007 355 FECKI-CGKSFRNSsCLSDHFRIH 377 SM00355: domain 7 of 13, from 383 to 405: score 29.8, E = 0.00038 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ Cgk f++ ++L++H r+H KIAA2007 383 YKCKD-CGKAFTQNsDLTKHARTH 405 SM00355: domain 8 of 13, from 411 to 433: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + + L +H r+H KIAA2007 411 YECKE-CGKAFARSsRLSEHTRTH 433 SM00355: domain 9 of 13, from 439 to 461: score 21.1, E = 0.16 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cgk f ++L H+r+H KIAA2007 439 FECVK-CGKAFAISsNLSGHLRIH 461 SM00614: domain 2 of 2, from 452 to 492: score 14.1, E = 0.087 *->kkrSkvWkhFtkiekkdngkrvetrAkCkyCgkklsysskgGTsnLr ++ S + + +t +k +C Cgk + +s s+L+ KIAA2007 452 SNLSGHLRIHTG--EKP--------FECLECGKAFTHS-----SSLN 483 rHLrrkHpar<-* +H+r +H+a KIAA2007 484 NHMR-THSAK 492 SM00355: domain 10 of 13, from 467 to 489: score 30.7, E = 0.0002 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cgk f++ ++L++Hmr+H KIAA2007 467 FECLE-CGKAFTHSsSLNNHMRTH 489 SM00355: domain 11 of 13, from 495 to 517: score 23.4, E = 0.031 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cgk f+ ++ + Hmr+H KIAA2007 495 FTCME-CGKAFKFPtCVNLHMRIH 517 SM00355: domain 12 of 13, from 523 to 545: score 29.1, E = 0.00061 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgksfs ++++ H r+H KIAA2007 523 YKCKQ-CGKSFSYSnSFQLHERTH 545 SM00355: domain 13 of 13, from 551 to 573: score 30.5, E = 0.00024 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk fss +++++H r+H KIAA2007 551 YECKE-CGKAFSSSsSFRNHERRH 573 //