hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18332292/chunk_1/iprscan-20080502-18332292.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1991 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00184 34.9 1.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00184 1/1 72 110 .. 1 23 [] 34.9 1.1e-05 Alignments of top-scoring domains: SM00184: domain 1 of 1, from 72 to 110: score 34.9, E = 1.1e-05 *->CpICle....pvvlpCgH.FCr.Ci..........CPlC<-* C+ Cle+++++ lpCgH+ Cr+C ++ + +++CP C KIAA1991 72 CAGCLEppgeAAALPCGHsLCRgCAqraadaagpgCPRC 110 //