hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17413467/chunk_1/iprscan-20080502-17413467.nocrc
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Query sequence: KIAA1960
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08687.1.ls Apx/Shroom domain ASD2                         536.8   2.1e-158   1
PF08687.1.fs Apx/Shroom domain ASD2                         535.0   7.6e-158   1
PF08688.1.fs Apx/Shroom domain ASD1                          43.6    4.7e-12   1
PF08688.1.ls Apx/Shroom domain ASD1                          17.1    6.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08688.1.ls   1/1     126   292 ..     1   236 []    17.1  6.3e-08
PF08688.1.fs   1/1     159   252 ..    46   187 ..    43.6  4.7e-12
PF08687.1.fs   1/1     566   843 ..     1   299 []   535.0 7.6e-158
PF08687.1.ls   1/1     566   843 ..     1   299 []   536.8 2.1e-158

Alignments of top-scoring domains:
PF08688.1.ls: domain 1 of 1, from 126 to 292: score 17.1, E = 6.3e-08
                   *->akLqKSkStvtLaaldaErEdgtsldrnksgDLSacpslegSFsntY
                        L++ + t  L al+aE+E+ +   ++ s+   +          +Y
    KIAA1960   126    --LNR-QATPLLYALAAEAEAAAQAAEPPSP---PAS------RAAY 160  

                   KekLKeAQarVLrATSFkRrDLepslLDnPaAesrpnyPeplearpemrp
                   +  L  AQ rVLr+TSF+R+ L +sl            P +l+  ++ rp
    KIAA1960   161 RQRLQGAQRRVLRETSFQRKELRMSL------------PARLRPTVPARP 198  

                   pvahtfssssdphtspevleaglakpeaatgsvkkDvrEdlEmEREAEEA
                   p  h    + +++ s +  e ++a   a + ++                 
    KIAA1960   199 PATH----PRSASLSHPGGEGEPARSRAPAPGTA---------------- 228  

                   NRCPvNvAqPhvvRIGGRKRlTaEqKkkSYSEPEKlneVGSA......Pi
                                   GR  l   q+k ++SEP Kl+ VG  +++ ++ +
    KIAA1960   229 ----------------GRGPLANQQRKWCFSEPGKLDRVGRGggpareCL 262  

                   qkSCRsFaveeEaspavedeprnrtsesssgtfAdRrkfFEekgK<-*
                      C s ++ + ++p+          e++    A     FE  +    
    KIAA1960   263 GEACSSSGLPG-PEPL----------EFQHPALAK----FEDHEV    292  

PF08688.1.fs: domain 1 of 1, from 159 to 252: score 43.6, E = 4.7e-12
                   *->tYKekLKeAQarVLrATSFkRrDLepslLDnPaAesrpnyPeplear
                      +Y+  L  AQ rVLr+TSF+R+ L +sl            P +l+  
    KIAA1960   159    AYRQRLQGAQRRVLRETSFQRKELRMSL------------PARLRPT 193  

                   pemrppvahtfssssdphtspevleaglakpeaatgsvkkDvrEdlEmER
                   ++ rpp  h    + +++ s +  e ++a   a + ++            
    KIAA1960   194 VPARPPATH----PRSASLSHPGGEGEPARSRAPAPGTA----------- 228  

                   EAEEANRCPvNvAqPhvvRIGGRKRlTaEqKkkSYSEPEKlneVG<-*
                                        GR  l   q+k ++SEP Kl+ VG   
    KIAA1960   229 ---------------------GRGPLANQQRKWCFSEPGKLDRVG    252  

PF08687.1.fs: domain 1 of 1, from 566 to 843: score 535.0, E = 7.6e-158
                   *->rElVrkLsPDkSLadiLapksrpkptmdLvegCLFPqdeklleksyq
                      +El+r+   D+SL+d+La++++p+p+++L++g L+P++e+       
    KIAA1960   566    QELARL---DPSLCDPLASQPSPEPPLGLLDG-LIPLAEV------- 601  

                   rrRlLkrdastetleeaksdfqhfePgkpassliqtlsayyslSapkael
                     R+++r+a++e++eea+s+   fePg++++s++q+l+a+++++++++++
    KIAA1960   602 --RAAMRPACGEAGEEAAST---FEPGSYQFSFTQLLPAPREETRLENPA 646  

                   lnklKdqpegqeleeglgedldndlqeKKvELiesLskKLqvLreeqesL
                   +++++dqp+gq+l+++     +n++q+KKvEL+++L+k+Lq+L++eqe+L
    KIAA1960   647 THPVLDQPCGQGLPAP-----NNSIQGKKVELAARLQKMLQDLHTEQERL 691  

                   ledisaNtaLGeeveAkVkevCkPnEfeKFrmFigDLdkVvsLLLSLSgR
                   +++++a++++++++eA+V+++C+P+E+e+F++F++DL++V++LLL+L++R
    KIAA1960   692 QGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLGSR 741  

                   LARVEnALnridsdadpdErqsLeeKrqlLqrQhEDAKeLKenlDRRErv
                   LARV++AL+r++sd+dpdE +sL+++++lLqrQ+EDAKeLKe+++RREr+
    KIAA1960   742 LARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRERA 791  

                   VagiLaryLpaEqLaDYdhFvkmKaaLiieQReLedKIKLgEEQLkcLkd
                   V+++L+r+Lp+E+L++Y++++++Kaa++++QR+L+++I+L+++QL++++d
    KIAA1960   792 VREVLVRALPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRD 841  

                   sL<-*
                   +L   
    KIAA1960   842 DL    843  

PF08687.1.ls: domain 1 of 1, from 566 to 843: score 536.8, E = 2.1e-158
                   *->rElVrkLsPDkSLadiLapksrpkptmdLvegCLFPqdeklleksyq
                      +El+r+   D+SL+d+La++++p+p+++L++g L+P++e+       
    KIAA1960   566    QELARL---DPSLCDPLASQPSPEPPLGLLDG-LIPLAEV------- 601  

                   rrRlLkrdastetleeaksdfqhfePgkpassliqtlsayyslSapkael
                     R+++r+a++e++eea+s+   fePg++++s++q+l+a+++++++++++
    KIAA1960   602 --RAAMRPACGEAGEEAAST---FEPGSYQFSFTQLLPAPREETRLENPA 646  

                   lnklKdqpegqeleeglgedldndlqeKKvELiesLskKLqvLreeqesL
                   +++++dqp+gq+l+++     +n++q+KKvEL+++L+k+Lq+L++eqe+L
    KIAA1960   647 THPVLDQPCGQGLPAP-----NNSIQGKKVELAARLQKMLQDLHTEQERL 691  

                   ledisaNtaLGeeveAkVkevCkPnEfeKFrmFigDLdkVvsLLLSLSgR
                   +++++a++++++++eA+V+++C+P+E+e+F++F++DL++V++LLL+L++R
    KIAA1960   692 QGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLGSR 741  

                   LARVEnALnridsdadpdErqsLeeKrqlLqrQhEDAKeLKenlDRRErv
                   LARV++AL+r++sd+dpdE +sL+++++lLqrQ+EDAKeLKe+++RREr+
    KIAA1960   742 LARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARRERA 791  

                   VagiLaryLpaEqLaDYdhFvkmKaaLiieQReLedKIKLgEEQLkcLkd
                   V+++L+r+Lp+E+L++Y++++++Kaa++++QR+L+++I+L+++QL++++d
    KIAA1960   792 VREVLVRALPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRD 841  

                   sL<-*
                   +L   
    KIAA1960   842 DL    843  

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