hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17330330/chunk_1/iprscan-20080502-17330330.nocrc
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Query sequence: KIAA1955
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00773.9.ls RNB domain                                     394.4   1.5e-115   1
PF00773.9.fs RNB domain                                     392.5   4.9e-115   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00773.9.fs   1/1     358   710 ..     1   350 []   392.5 4.9e-115
PF00773.9.ls   1/1     358   710 ..     1   350 []   394.4 1.5e-115

Alignments of top-scoring domains:
PF00773.9.fs: domain 1 of 1, from 358 to 710: score 392.5, E = 4.9e-115
                   *->RrDLprdl.pffTIDpedakDiDDAlsierlddGgyrLgVHIADVsh
                      R+DL r+ +++f+IDp ++ D+DD ls+++l++G+ +LgVHIADV+h
    KIAA1955   358    RKDL-RKShLVFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTH 403  

                   yVkpgSpLDreArkRgtSvYLPerviPMLPeeLsndlCSLnpgedRlAlS
                   +V p+S +D eAr R+t+ YL++r+++MLP +Ls dlCSL+ g+dR+A+S
    KIAA1955   404 FVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSLLGGVDRYAVS 453  

                   veitidkd.GevldyeiypsvIrskarLtYeevqelle............
                   + +++dk + e+++++ ++++Irs+++L Ye +qell+++ +  ++ ++ 
    KIAA1955   454 IMWELDKAsYEIKKVWYGRTIIRSAYKLFYEAAQELLDgnlsvvddipef 503  

                   ...............adsLrlLllmelakaLrkkRlkrGaleledplppn
                   ++ ++++++ + ++    + +L   ++a++ r+kR   Galel +     
    KIAA1955   504 kdldeksrqakleelVWAIGKLT--DIARHVRAKRDGCGALEL-E-GV-- 547  

                   levkfildeegepvdivreesekrtpahsLiEEfMllANeavArfls.en
                    ev ++ld++++++d ++++   +++ h+ ++E+M+lAN+ vA+++ + +
    KIAA1955   548 -EVCVQLDDKKNIHDLIPKQ---PLEVHETVAECMILANHWVAKKIWeSF 593  

                   gipgiyRvhpePdeevaknklqdllkllamsaalGleldldseg.leldi
                   +  +++R hp+P +e     + +l++ +   +a G+ +d  s+++l    
    KIAA1955   594 PHQALLRQHPPPHQE----FFSELRECA---KAKGFFIDTRSNKtL---- 632  

                   ktlkslqklleelkksdegspeelllnylllrsmkrAeYfvs.e.s.ste
                     + sl +  +       ++ +++ll+++ + +m+ A Yf++++ ++   
    KIAA1955   633 --ADSLDNANDP-----HDPIVNRLLRSMATQAMSNALYFSTgScAeEEF 675  

                   pagHfGLglehYtHFTSPIRRYpDLivHRqLkaaLag<-*
                   +  H+GL+l+ YtHFTSPIRRY+D++vHR+L aa+++   
    KIAA1955   676 H--HYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISK    710  

PF00773.9.ls: domain 1 of 1, from 358 to 710: score 394.4, E = 1.5e-115
                   *->RrDLprdl.pffTIDpedakDiDDAlsierlddGgyrLgVHIADVsh
                      R+DL r+ +++f+IDp ++ D+DD ls+++l++G+ +LgVHIADV+h
    KIAA1955   358    RKDL-RKShLVFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTH 403  

                   yVkpgSpLDreArkRgtSvYLPerviPMLPeeLsndlCSLnpgedRlAlS
                   +V p+S +D eAr R+t+ YL++r+++MLP +Ls dlCSL+ g+dR+A+S
    KIAA1955   404 FVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSLLGGVDRYAVS 453  

                   veitidkd.GevldyeiypsvIrskarLtYeevqelle............
                   + +++dk + e+++++ ++++Irs+++L Ye +qell+++ +  ++ ++ 
    KIAA1955   454 IMWELDKAsYEIKKVWYGRTIIRSAYKLFYEAAQELLDgnlsvvddipef 503  

                   ...............adsLrlLllmelakaLrkkRlkrGaleledplppn
                   ++ ++++++ + ++    + +L   ++a++ r+kR   Galel +     
    KIAA1955   504 kdldeksrqakleelVWAIGKLT--DIARHVRAKRDGCGALEL-E-GV-- 547  

                   levkfildeegepvdivreesekrtpahsLiEEfMllANeavArfls.en
                    ev ++ld++++++d ++++   +++ h+ ++E+M+lAN+ vA+++ + +
    KIAA1955   548 -EVCVQLDDKKNIHDLIPKQ---PLEVHETVAECMILANHWVAKKIWeSF 593  

                   gipgiyRvhpePdeevaknklqdllkllamsaalGleldldseg.leldi
                   +  +++R hp+P +e     + +l++ +   +a G+ +d  s+++l    
    KIAA1955   594 PHQALLRQHPPPHQE----FFSELRECA---KAKGFFIDTRSNKtL---- 632  

                   ktlkslqklleelkksdegspeelllnylllrsmkrAeYfvs.e.s.ste
                     + sl +  +       ++ +++ll+++ + +m+ A Yf++++ ++   
    KIAA1955   633 --ADSLDNANDP-----HDPIVNRLLRSMATQAMSNALYFSTgScAeEEF 675  

                   pagHfGLglehYtHFTSPIRRYpDLivHRqLkaaLag<-*
                   +  H+GL+l+ YtHFTSPIRRY+D++vHR+L aa+++   
    KIAA1955   676 H--HYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISK    710  

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