hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17311975/chunk_1/iprscan-20080502-17311975.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1954 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 421.8 9e-124 13 PF00096.16.fs Zinc finger, C2H2 type 396.2 4.5e-116 13 PF01096.9.fs Transcription factor S-II (TFIIS) 48.3 2.9e-14 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/13 43 65 .. 1 24 [] 29.2 5e-06 PF00096.16.ls 1/13 43 65 .. 1 24 [] 31.2 3.4e-06 PF00096.16.fs 2/13 86 108 .. 1 24 [] 28.0 1e-05 PF00096.16.ls 2/13 86 108 .. 1 24 [] 30.0 8e-06 PF00096.16.fs 3/13 114 136 .. 1 24 [] 27.9 1.1e-05 PF00096.16.ls 3/13 114 136 .. 1 24 [] 29.9 8.5e-06 PF00096.16.ls 4/13 142 164 .. 1 24 [] 34.9 2.6e-07 PF00096.16.fs 4/13 142 164 .. 1 24 [] 32.9 5.9e-07 PF00096.16.fs 5/13 170 192 .. 1 24 [] 25.5 4.2e-05 PF00096.16.ls 5/13 170 192 .. 1 24 [] 27.4 4.6e-05 PF00096.16.fs 6/13 198 220 .. 1 24 [] 33.0 5.5e-07 PF00096.16.ls 6/13 198 220 .. 1 24 [] 35.0 2.4e-07 PF00096.16.fs 7/13 226 248 .. 1 24 [] 30.7 2.1e-06 PF00096.16.ls 7/13 226 248 .. 1 24 [] 32.7 1.2e-06 PF00096.16.ls 8/13 282 304 .. 1 24 [] 26.0 0.00013 PF00096.16.fs 8/13 282 304 .. 1 24 [] 24.0 9.9e-05 PF00096.16.ls 9/13 329 351 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 9/13 329 351 .. 1 24 [] 30.2 2.9e-06 PF00096.16.ls 10/13 357 379 .. 1 24 [] 37.4 4.5e-08 PF00096.16.fs 10/13 357 379 .. 1 24 [] 35.5 1.4e-07 PF00096.16.ls 11/13 385 407 .. 1 24 [] 32.3 1.6e-06 PF00096.16.fs 11/13 385 407 .. 1 24 [] 30.3 2.6e-06 PF00096.16.fs 12/13 413 435 .. 1 24 [] 31.9 1e-06 PF00096.16.ls 12/13 413 435 .. 1 24 [] 33.9 5.2e-07 PF00096.16.fs 13/13 441 463 .. 1 24 [] 37.1 5.4e-08 PF00096.16.ls 13/13 441 463 .. 1 24 [] 39.1 1.4e-08 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 13, from 43 to 65: score 29.2, E = 5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F ++s+L++H +tH KIAA1954 43 YKCD-KCRKAFIHRSSLTKHEKTH 65 PF00096.16.ls: domain 1 of 13, from 43 to 65: score 31.2, E = 3.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+F ++s+L++H +tH KIAA1954 43 YKCD-KCRKAFIHRSSLTKHEKTH 65 PF00096.16.fs: domain 2 of 13, from 86 to 108: score 28.0, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk+F k +L+ H+r+H KIAA1954 86 HECT-DCGKTFLWKTQLTEHQRIH 108 PF00096.16.ls: domain 2 of 13, from 86 to 108: score 30.0, E = 8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk+F k +L+ H+r+H KIAA1954 86 HECT-DCGKTFLWKTQLTEHQRIH 108 PF00096.16.fs: domain 3 of 13, from 114 to 136: score 27.9, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++s+L +H + H KIAA1954 114 FECN-VCGKAFRHSSSLGQHENAH 136 PF00096.16.ls: domain 3 of 13, from 114 to 136: score 29.9, E = 8.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++s+L +H + H KIAA1954 114 FECN-VCGKAFRHSSSLGQHENAH 136 PF00096.16.ls: domain 4 of 13, from 142 to 164: score 34.9, E = 2.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F r+s+L +H+r+H KIAA1954 142 YQCS-LCGKAFQRSSSLVQHQRIH 164 PF00096.16.fs: domain 4 of 13, from 142 to 164: score 32.9, E = 5.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F r+s+L +H+r+H KIAA1954 142 YQCS-LCGKAFQRSSSLVQHQRIH 164 PF00096.16.fs: domain 5 of 13, from 170 to 192: score 25.5, E = 4.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cg+sF++ +L++H tH KIAA1954 170 YRCN-LCGRSFRHGTSLTQHEVTH 192 PF00096.16.ls: domain 5 of 13, from 170 to 192: score 27.4, E = 4.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cg+sF++ +L++H tH KIAA1954 170 YRCN-LCGRSFRHGTSLTQHEVTH 192 PF00096.16.fs: domain 6 of 13, from 198 to 220: score 33.0, E = 5.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fsr s+L +H rtH KIAA1954 198 FQCK-ECGKAFSRCSSLVQHERTH 220 PF00096.16.ls: domain 6 of 13, from 198 to 220: score 35.0, E = 2.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fsr s+L +H rtH KIAA1954 198 FQCK-ECGKAFSRCSSLVQHERTH 220 PF00096.16.fs: domain 7 of 13, from 226 to 248: score 30.7, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++F ++ +L +H+r+H KIAA1954 226 FECS-ICGRAFGQSPSLYKHMRIH 248 PF00096.16.ls: domain 7 of 13, from 226 to 248: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++F ++ +L +H+r+H KIAA1954 226 FECS-ICGRAFGQSPSLYKHMRIH 248 PF00096.16.ls: domain 8 of 13, from 282 to 304: score 26.0, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dCg+ Fs+ +++ H+r+H KIAA1954 282 YHCN-DCGEDFSHITDFTDHQRIH 304 PF00096.16.fs: domain 8 of 13, from 282 to 304: score 24.0, E = 9.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ dCg+ Fs+ +++ H+r+H KIAA1954 282 YHCN-DCGEDFSHITDFTDHQRIH 304 PF00096.16.ls: domain 9 of 13, from 329 to 351: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+ ++ H r+H KIAA1954 329 YQCN-VCGKAFKRSTSFIEHHRIH 351 PF00096.16.fs: domain 9 of 13, from 329 to 351: score 30.2, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+r+ ++ H r+H KIAA1954 329 YQCN-VCGKAFKRSTSFIEHHRIH 351 PF00096.16.ls: domain 10 of 13, from 357 to 379: score 37.4, E = 4.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++Fsr+s+L++H rtH KIAA1954 357 YECN-ECGEAFSRRSSLTQHERTH 379 PF00096.16.fs: domain 10 of 13, from 357 to 379: score 35.5, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++Fsr+s+L++H rtH KIAA1954 357 YECN-ECGEAFSRRSSLTQHERTH 379 PF00096.16.ls: domain 11 of 13, from 385 to 407: score 32.3, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCgk+Fs++s+L +H rtH KIAA1954 385 YECI-DCGKAFSQSSSLIQHERTH 407 PF00096.16.fs: domain 11 of 13, from 385 to 407: score 30.3, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C dCgk+Fs++s+L +H rtH KIAA1954 385 YECI-DCGKAFSQSSSLIQHERTH 407 PF00096.16.fs: domain 12 of 13, from 413 to 435: score 31.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+ k nL+ H+r+H KIAA1954 413 YECN-ECGRAFRKKTNLHDHQRIH 435 PF00096.16.ls: domain 12 of 13, from 413 to 435: score 33.9, E = 5.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+ k nL+ H+r+H KIAA1954 413 YECN-ECGRAFRKKTNLHDHQRIH 435 PF00096.16.fs: domain 13 of 13, from 441 to 463: score 37.1, E = 5.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk Fsr+s L++H+r+H KIAA1954 441 YSCK-ECGKNFSRSSALTKHQRIH 463 PF00096.16.ls: domain 13 of 13, from 441 to 463: score 39.1, E = 1.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk Fsr+s L++H+r+H KIAA1954 441 YSCK-ECGKNFSRSSALTKHQRIH 463 //